BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD
family protein [Candidatus Liberibacter asiaticus str. psy62]
(188 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|307943601|ref|ZP_07658945.1| transcription factor CarD [Roseibium sp. TrichSKD4]
gi|307773231|gb|EFO32448.1| transcription factor CarD [Roseibium sp. TrichSKD4]
Length = 194
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 117/194 (60%), Positives = 144/194 (74%), Gaps = 6/194 (3%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M K+ A RQGF+TGE+IVYPAHGVG IT I+EQ VAG LE VI F+KDKM L+VP
Sbjct: 1 MASTTKKTAQRQGFKTGEYIVYPAHGVGQITAIEEQNVAGHSLELLVIVFEKDKMTLRVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V K +GMRKL + V++AL+ VRG+ RVKRTMWSRRAQEY+AKINSGDLI+I+EVVR
Sbjct: 61 VAKIASVGMRKLGDPDAVKKALETVRGRPRVKRTMWSRRAQEYEAKINSGDLISISEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R+DSQPE+SYSERQLYE+AL+R+ REIAAVN SE EA IE L ++ +
Sbjct: 121 DLYRSDSQPEQSYSERQLYEAALDRLAREIAAVNKCSETEATKQIEQTLEKSPNRPKAPA 180
Query: 181 SEN------QDKAA 188
+ Q++AA
Sbjct: 181 EADSTGSDGQEEAA 194
>gi|163839171|ref|YP_001623576.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
gi|162952647|gb|ABY22162.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
Length = 301
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 80/158 (50%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK + + G + + + + + ++VP +G+R +
Sbjct: 144 FEIGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 203
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+E ++R + + T WSRR + K+ SGD+I +AEVVRDL R D S
Sbjct: 204 GKEGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDHDRGLSA 263
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A ++ E+A E +A +++ L+S
Sbjct: 264 GEKRMLAKARQILISELALAEKTDEEKAATVLDEVLAS 301
>gi|315122139|ref|YP_004062628.1| transcriptional regulator CarD family protein [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495541|gb|ADR52140.1| transcriptional regulator CarD family protein [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 188
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 171/188 (90%), Positives = 179/188 (95%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT QQK+ MRQGF+TGEHIVYP HGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP
Sbjct: 1 MTVQQKKSMMRQGFKTGEHIVYPTHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR
Sbjct: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+RT++QPEKSYSERQLYESALNRMVRE+AAVNSISEPEAI+LIEVNLSSK K EK T
Sbjct: 121 DLYRTENQPEKSYSERQLYESALNRMVREVAAVNSISEPEAIDLIEVNLSSKRPKDEKPT 180
Query: 181 SENQDKAA 188
+ENQ KAA
Sbjct: 181 NENQCKAA 188
>gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD family protein [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040094|gb|ACT56890.1| transcriptional regulator CarD family protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 188
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP
Sbjct: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR
Sbjct: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST
Sbjct: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
Query: 181 SENQDKAA 188
SENQDKAA
Sbjct: 181 SENQDKAA 188
>gi|75674610|ref|YP_317031.1| transcription factor CarD [Nitrobacter winogradskyi Nb-255]
gi|74419480|gb|ABA03679.1| transcriptional regulator, CarD family [Nitrobacter winogradskyi
Nb-255]
Length = 283
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 109/177 (61%), Positives = 140/177 (79%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGF+TGE +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 87 KKVLTQRQGFKTGEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 146
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
++GMRKLSE V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R
Sbjct: 147 ANVGMRKLSEPGLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 206
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181
++SQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ IE L+ + K+ +
Sbjct: 207 SESQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAVKEIEGQLAKSPRRGAKAEA 263
>gi|296268490|ref|YP_003651122.1| CarD family transcriptional regulator [Thermobispora bispora DSM
43833]
gi|296091277|gb|ADG87229.1| transcriptional regulator, CarD family [Thermobispora bispora DSM
43833]
Length = 163
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 85/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I + + G + + V+ DK + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAARIEAITTRTINGQEKTYLVLKVDKGDLTVQVPAENAELVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ER ++R + T WSRR + K+ SGD+ +AEVVRDL+R D + S
Sbjct: 63 GQEGLERVFDVLRMPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLYRRDKERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A + +E +A L++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLNSAR 162
>gi|222150214|ref|YP_002551171.1| transcriptional regulator CarD family [Agrobacterium vitis S4]
gi|221737196|gb|ACM38159.1| transcriptional regulator CarD family [Agrobacterium vitis S4]
Length = 223
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 135/188 (71%), Positives = 156/188 (82%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT QQK+ + RQGF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI FDKDKM LKVP
Sbjct: 35 MTTQQKKSSTRQGFKTGEAIVYPAHGVGTITAIEEQEVAGMKLELFVIDFDKDKMRLKVP 94
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR
Sbjct: 95 VTKAVTIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 154
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R + QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+EVNL+ + +
Sbjct: 155 DLFRAEHQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNLAKGPKRGKSVE 214
Query: 181 SENQDKAA 188
+ + A
Sbjct: 215 EDETQEEA 222
>gi|110635707|ref|YP_675915.1| CarD family transcriptional regulator [Mesorhizobium sp. BNC1]
gi|110286691|gb|ABG64750.1| transcriptional regulator, CarD family [Chelativorans sp. BNC1]
Length = 190
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 130/187 (69%), Positives = 155/187 (82%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M QQK+ A RQGF+TGE IVYPAHGVG I I++QEVAG KLE FVI F KDKM LKVP
Sbjct: 1 MATQQKKSAQRQGFKTGEFIVYPAHGVGQIVAIEDQEVAGHKLELFVIDFQKDKMRLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
VGKA IGMRKLSE +V+RALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR
Sbjct: 61 VGKATAIGMRKLSETDYVDRALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIE NL+ + K+
Sbjct: 121 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIETNLAKGPRRGTKAE 180
Query: 181 SENQDKA 187
+++ +K
Sbjct: 181 NDDAEKE 187
>gi|299132816|ref|ZP_07026011.1| transcriptional regulator, CarD family [Afipia sp. 1NLS2]
gi|298592953|gb|EFI53153.1| transcriptional regulator, CarD family [Afipia sp. 1NLS2]
Length = 403
Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 107/171 (62%), Positives = 138/171 (80%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGF+T E +VYPAHGVG I I+EQE+AG LE FVI+F KDKM L+VP K
Sbjct: 201 KKVLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGATLELFVISFIKDKMTLRVPTAKV 260
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I++GMRKLS+ V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R
Sbjct: 261 INVGMRKLSDPALVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 320
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
++SQPE+SYSERQLYE+AL+R+ REIA V I+E EA+ +E NL+ +
Sbjct: 321 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEVEANLAKSPRR 371
>gi|154244145|ref|YP_001415103.1| CarD family transcriptional regulator [Xanthobacter autotrophicus
Py2]
gi|154158230|gb|ABS65446.1| transcriptional regulator, CarD family [Xanthobacter autotrophicus
Py2]
Length = 206
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 116/186 (62%), Positives = 147/186 (79%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+K R GF+TGEHIVYP+HGVG I I+EQEVAG KLE FVI+F+KDKM L+VPV
Sbjct: 13 SAKKNAQTRLGFKTGEHIVYPSHGVGRIMAIEEQEVAGFKLELFVISFEKDKMTLRVPVP 72
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
K +GMRKLSE + V+++L+ ++G+ARVKRTMWSRRAQEY+AKINSGDL+AI+EVVRDL
Sbjct: 73 KIATVGMRKLSETNIVDKSLETLQGRARVKRTMWSRRAQEYEAKINSGDLVAISEVVRDL 132
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182
+R+D+QPE+SYSERQLYE+AL+RM RE++AVN+I+E EA+ LIE NL + E
Sbjct: 133 YRSDAQPEQSYSERQLYEAALDRMARELSAVNNITETEAVKLIEQNLLKGPRRGTAKVVE 192
Query: 183 NQDKAA 188
D A
Sbjct: 193 EADLDA 198
>gi|90422072|ref|YP_530442.1| CarD family transcriptional regulator [Rhodopseudomonas palustris
BisB18]
gi|90104086|gb|ABD86123.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris
BisB18]
Length = 365
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 111/184 (60%), Positives = 140/184 (76%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+K RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 167 AKKPLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFMKDKMTLRVPTAK 226
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
++GMRKLSE V+RAL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+
Sbjct: 227 VANVGMRKLSEPALVKRALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLY 286
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
R+DSQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ + K+ E
Sbjct: 287 RSDSQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAVKEVEGQLAKSPRRGAKTEVEA 346
Query: 184 QDKA 187
A
Sbjct: 347 DADA 350
>gi|239981206|ref|ZP_04703730.1| putative CarD-like transcriptional regulator [Streptomyces albus
J1074]
gi|291453071|ref|ZP_06592461.1| transcriptional factor regulator [Streptomyces albus J1074]
gi|291356020|gb|EFE82922.1| transcriptional factor regulator [Streptomyces albus J1074]
Length = 160
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 87/158 (55%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKNYLVLKVAQGDLTVRVPADNAELVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S
Sbjct: 63 GQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIRVAEVVRDLWRRERERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + +E +A L++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160
>gi|84500895|ref|ZP_00999130.1| transcriptional regulator, CarD family protein [Oceanicola
batsensis HTCC2597]
gi|84390962|gb|EAQ03380.1| transcriptional regulator, CarD family protein [Oceanicola
batsensis HTCC2597]
Length = 169
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 98/174 (56%), Positives = 128/174 (73%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR +++VYPAHGVG I I+ QE+AG+ LE FVI+F+KDKM L+VP
Sbjct: 1 MTKAKK-----AEFRPNDYVVYPAHGVGQIVSIESQEIAGISLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA ++GMR LS V +A+ ++GKA+VKR MWSRRAQEY+ KINSGDL+AIAEVVR
Sbjct: 56 TNKATEVGMRSLSTPDVVSKAMSTLKGKAKVKRAMWSRRAQEYEQKINSGDLVAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHR D Q E+SYSERQLYE+AL R+ RE+AAV+ E +A ++ L S+++
Sbjct: 116 DLHRNDDQREQSYSERQLYEAALERLTREVAAVSGADEVDAARKVDEVLVSRAA 169
>gi|226304175|ref|YP_002764133.1| hypothetical protein RER_06860 [Rhodococcus erythropolis PR4]
gi|229494349|ref|ZP_04388112.1| transcriptional regulator, CarD family protein [Rhodococcus
erythropolis SK121]
gi|226183290|dbj|BAH31394.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229318711|gb|EEN84569.1| transcriptional regulator, CarD family protein [Rhodococcus
erythropolis SK121]
Length = 162
Score = 148 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 83/160 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAEGTDTEKAETILDEVLAAAS 162
>gi|15827084|ref|NP_301347.1| transcription factor [Mycobacterium leprae TN]
gi|221229562|ref|YP_002502978.1| putative transcription factor [Mycobacterium leprae Br4923]
gi|13092632|emb|CAC29828.1| putative transcription factor [Mycobacterium leprae]
gi|219932669|emb|CAR70413.1| putative transcription factor [Mycobacterium leprae Br4923]
Length = 165
Score = 148 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 85/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 6 FKVGDTVVYPHHGAALVEAIETRTINGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 65
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ ++EVVRDL R D S
Sbjct: 66 GQEGLDQVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVSEVVRDLWRRDQDRGLSA 125
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A S + +A +++ L++ S
Sbjct: 126 GEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 165
>gi|86747677|ref|YP_484173.1| CarD family transcriptional regulator [Rhodopseudomonas palustris
HaA2]
gi|86570705|gb|ABD05262.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris
HaA2]
Length = 429
Score = 148 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 107/183 (58%), Positives = 140/183 (76%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 230 KKVVTQRQGFKASEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 289
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL R
Sbjct: 290 ANVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFR 349
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184
+DSQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ + K+ ++ +
Sbjct: 350 SDSQPEQSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRRGAKAEADAE 409
Query: 185 DKA 187
A
Sbjct: 410 GDA 412
>gi|111021431|ref|YP_704403.1| CarD family transcriptional regulator [Rhodococcus jostii RHA1]
gi|226363787|ref|YP_002781569.1| hypothetical protein ROP_43770 [Rhodococcus opacus B4]
gi|110820961|gb|ABG96245.1| probable transcriptional regulator, CarD family protein
[Rhodococcus jostii RHA1]
gi|226242276|dbj|BAH52624.1| hypothetical protein [Rhodococcus opacus B4]
Length = 162
Score = 148 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 83/160 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAEGTDSDKAETILDEVLAAAS 162
>gi|163759997|ref|ZP_02167081.1| hypothetical protein HPDFL43_17241 [Hoeflea phototrophica DFL-43]
gi|162282955|gb|EDQ33242.1| hypothetical protein HPDFL43_17241 [Hoeflea phototrophica DFL-43]
Length = 189
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 129/188 (68%), Positives = 154/188 (81%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKVP
Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGHKLELFVIDFEKDKMRLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA IGMRKLSE FVERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR
Sbjct: 61 VAKASTIGMRKLSETDFVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R ++QPE+SYSERQLYE+AL+RM RE+AAVN +S+ EA+ LIE NL+ + + +
Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMARELAAVNKMSDTEAVRLIETNLNKGPKRGKAAD 180
Query: 181 SENQDKAA 188
+ + A
Sbjct: 181 EDGAQEEA 188
>gi|227823778|ref|YP_002827751.1| putative transcriptional regulator, CarD family [Sinorhizobium
fredii NGR234]
gi|227342780|gb|ACP26998.1| putative transcriptional regulator, CarD family [Sinorhizobium
fredii NGR234]
Length = 189
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 132/188 (70%), Positives = 155/188 (82%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI FDKDKM LKVP
Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFDKDKMRLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR
Sbjct: 61 VAKAVSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ + +
Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEANLNKGPKRGKAIE 180
Query: 181 SENQDKAA 188
++ A
Sbjct: 181 EDDTQDEA 188
>gi|254234156|ref|ZP_04927480.1| hypothetical protein TBCG_03510 [Mycobacterium tuberculosis C]
gi|124603824|gb|EAY61787.1| hypothetical protein TBCG_03510 [Mycobacterium tuberculosis C]
Length = 174
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 88/165 (53%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G
Sbjct: 10 SNQMIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVG 69
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R + +++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D +
Sbjct: 70 VRDVVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQE 129
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
S E+++ A +V E+A S + +A +++ L++ S
Sbjct: 130 RGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 174
>gi|304394153|ref|ZP_07376076.1| CarD family transcriptional regulator [Ahrensia sp. R2A130]
gi|303293593|gb|EFL87970.1| CarD family transcriptional regulator [Ahrensia sp. R2A130]
Length = 193
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 119/182 (65%), Positives = 142/182 (78%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K+ RQGF+TGE IVYPAHGVG ITEI++QEVAG +LE FVI F KDKM L+VPV K
Sbjct: 4 KKATQRQGFKTGEFIVYPAHGVGQITEIEQQEVAGFELELFVIEFAKDKMTLRVPVPKIE 63
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+GMRKL+E V+++L V+G+AR+KRTMWSRRAQEYDAKINSGDLI IAEVVRDL R+
Sbjct: 64 SVGMRKLAEPKLVDKSLMTVQGRARIKRTMWSRRAQEYDAKINSGDLIQIAEVVRDLFRS 123
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQD 185
D+QPE+SYSERQLYE+AL RM REI+ V ISE EA+ LIE NL+ + K E +D
Sbjct: 124 DTQPEQSYSERQLYEAALERMAREISVVKKISETEAVQLIEANLAKGPRRGPKPEGEEED 183
Query: 186 KA 187
A
Sbjct: 184 GA 185
>gi|84515406|ref|ZP_01002768.1| putative CarD-like transcriptional regulator [Loktanella
vestfoldensis SKA53]
gi|84510689|gb|EAQ07144.1| putative CarD-like transcriptional regulator [Loktanella
vestfoldensis SKA53]
Length = 225
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 100/169 (59%), Positives = 118/169 (69%), Gaps = 6/169 (3%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT ++ F + +VYPAHGVG I ++ QEVAG +LE FVIAF+KDKM L+VP
Sbjct: 58 MTKKK------SEFSPDQFVVYPAHGVGKIVSVETQEVAGFELEMFVIAFEKDKMTLRVP 111
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA D+GMR L+ V ALK +RGKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 112 THKATDVGMRALATPDVVNHALKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVR 171
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
DLHR D Q E+SYSERQLYE+AL R+ RE AAV E A I L
Sbjct: 172 DLHRQDDQREQSYSERQLYEAALERLTREFAAVAGDDENAAAAQIGSVL 220
>gi|91974760|ref|YP_567419.1| transcription factor CarD [Rhodopseudomonas palustris BisB5]
gi|91681216|gb|ABE37518.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris
BisB5]
Length = 432
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 106/180 (58%), Positives = 139/180 (77%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGF+ GE +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 235 KKAVTQRQGFKAGEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 294
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL R
Sbjct: 295 ANVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFR 354
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184
++SQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ + K+ + +
Sbjct: 355 SESQPEQSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRRGAKAEVDAE 414
>gi|21222627|ref|NP_628406.1| transcriptional factor regulator [Streptomyces coelicolor A3(2)]
gi|29830513|ref|NP_825147.1| CarD-like transcriptional regulator [Streptomyces avermitilis
MA-4680]
gi|182437804|ref|YP_001825523.1| putative CarD-like transcriptional regulator [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|239930480|ref|ZP_04687433.1| putative CarD-like transcriptional regulator [Streptomyces
ghanaensis ATCC 14672]
gi|239942338|ref|ZP_04694275.1| putative CarD-like transcriptional regulator [Streptomyces
roseosporus NRRL 15998]
gi|239988803|ref|ZP_04709467.1| putative CarD-like transcriptional regulator [Streptomyces
roseosporus NRRL 11379]
gi|254387144|ref|ZP_05002415.1| transcriptional factor regulator [Streptomyces sp. Mg1]
gi|254388532|ref|ZP_05003766.1| transcriptional factor regulator [Streptomyces clavuligerus ATCC
27064]
gi|256786303|ref|ZP_05524734.1| putative CarD-like transcriptional regulator [Streptomyces lividans
TK24]
gi|282860513|ref|ZP_06269579.1| transcriptional regulator, CarD family [Streptomyces sp. ACTE]
gi|289770194|ref|ZP_06529572.1| transcriptional factor regulator [Streptomyces lividans TK24]
gi|290959414|ref|YP_003490596.1| transcriptional regulator [Streptomyces scabiei 87.22]
gi|291438841|ref|ZP_06578231.1| transcriptional factor regulator [Streptomyces ghanaensis ATCC
14672]
gi|291445795|ref|ZP_06585185.1| transcriptional factor regulator [Streptomyces roseosporus NRRL
15998]
gi|294630053|ref|ZP_06708613.1| CarD family transcriptional regulator [Streptomyces sp. e14]
gi|294814053|ref|ZP_06772696.1| Transcriptional regulator, CarD family [Streptomyces clavuligerus
ATCC 27064]
gi|295838029|ref|ZP_06824962.1| CarD family transcriptional regulator [Streptomyces sp. SPB74]
gi|297193588|ref|ZP_06910986.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
25486]
gi|297200594|ref|ZP_06917991.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
gi|302520127|ref|ZP_07272469.1| transcriptional regulator [Streptomyces sp. SPB78]
gi|302535866|ref|ZP_07288208.1| transcriptional regulator [Streptomyces sp. C]
gi|302552344|ref|ZP_07304686.1| transcriptional regulator [Streptomyces viridochromogenes DSM
40736]
gi|302559957|ref|ZP_07312299.1| CarD family transcriptional regulator [Streptomyces griseoflavus
Tu4000]
gi|318058492|ref|ZP_07977215.1| transcriptional regulator [Streptomyces sp. SA3_actG]
gi|318075598|ref|ZP_07982930.1| transcriptional regulator [Streptomyces sp. SA3_actF]
gi|326442457|ref|ZP_08217191.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
gi|326778439|ref|ZP_08237704.1| transcriptional regulator, CarD family [Streptomyces cf. griseus
XylebKG-1]
gi|329936179|ref|ZP_08285972.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
gi|7242753|emb|CAB77326.1| putative transcriptional factor regulator [Streptomyces coelicolor
A3(2)]
gi|29607625|dbj|BAC71682.1| putative CarD-like transcriptional regulator [Streptomyces
avermitilis MA-4680]
gi|178466320|dbj|BAG20840.1| putative CarD-like transcriptional regulator [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|194345960|gb|EDX26926.1| transcriptional factor regulator [Streptomyces sp. Mg1]
gi|197699155|gb|EDY46088.1| CarD family transcriptional regulator [Streptomyces sp. SPB74]
gi|197702253|gb|EDY48065.1| transcriptional factor regulator [Streptomyces clavuligerus ATCC
27064]
gi|197709720|gb|EDY53754.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
gi|197718134|gb|EDY62042.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
25486]
gi|260648940|emb|CBG72054.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
gi|282564249|gb|EFB69785.1| transcriptional regulator, CarD family [Streptomyces sp. ACTE]
gi|289700393|gb|EFD67822.1| transcriptional factor regulator [Streptomyces lividans TK24]
gi|291341736|gb|EFE68692.1| transcriptional factor regulator [Streptomyces ghanaensis ATCC
14672]
gi|291348742|gb|EFE75646.1| transcriptional factor regulator [Streptomyces roseosporus NRRL
15998]
gi|292833386|gb|EFF91735.1| CarD family transcriptional regulator [Streptomyces sp. e14]
gi|294326652|gb|EFG08295.1| Transcriptional regulator, CarD family [Streptomyces clavuligerus
ATCC 27064]
gi|297158399|gb|ADI08111.1| putative transcriptional regulator [Streptomyces bingchenggensis
BCW-1]
gi|302429022|gb|EFL00838.1| transcriptional regulator [Streptomyces sp. SPB78]
gi|302444761|gb|EFL16577.1| transcriptional regulator [Streptomyces sp. C]
gi|302469962|gb|EFL33055.1| transcriptional regulator [Streptomyces viridochromogenes DSM
40736]
gi|302477575|gb|EFL40668.1| CarD family transcriptional regulator [Streptomyces griseoflavus
Tu4000]
gi|315455531|emb|CBY85030.1| hypothetical protein [Streptomyces sp. ATCC 55098]
gi|326658772|gb|EGE43618.1| transcriptional regulator, CarD family [Streptomyces cf. griseus
XylebKG-1]
gi|328884013|emb|CCA57252.1| CarD transcriptional regulator [Streptomyces venezuelae ATCC 10712]
gi|329304289|gb|EGG48169.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
Length = 160
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 87/158 (55%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S
Sbjct: 63 GQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + +E +A L++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160
>gi|118470459|ref|YP_890299.1| CarD family transcriptional regulator [Mycobacterium smegmatis str.
MC2 155]
gi|118171746|gb|ABK72642.1| transcriptional regulator, CarD family protein [Mycobacterium
smegmatis str. MC2 155]
Length = 162
Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 86/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A + + +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAENTDDAKAETILDEVLAAAS 162
>gi|145222036|ref|YP_001132714.1| CarD family transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315446222|ref|YP_004079101.1| CarD family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145214522|gb|ABP43926.1| transcriptional regulator, CarD family [Mycobacterium gilvum
PYR-GCK]
gi|315264525|gb|ADU01267.1| transcriptional regulator, CarD family [Mycobacterium sp. Spyr1]
Length = 162
Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 86/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A + + +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAENTDDAKASTILDEVLAAAS 162
>gi|298293646|ref|YP_003695585.1| CarD family transcriptional regulator [Starkeya novella DSM 506]
gi|296930157|gb|ADH90966.1| transcriptional regulator, CarD family [Starkeya novella DSM 506]
Length = 200
Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 117/179 (65%), Positives = 147/179 (82%), Gaps = 1/179 (0%)
Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT +K RQGF+TGEHIVYP+HGVG IT I+EQEVAG KLE FVI F+KDKM L+V
Sbjct: 1 MTSTKKPSTNIRQGFKTGEHIVYPSHGVGRITSIEEQEVAGFKLELFVIHFEKDKMTLRV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV K +GMRKLSE +++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGDL+AI+EVV
Sbjct: 61 PVPKIASVGMRKLSEPTILKKALETLKGRARVKRTMWSRRAQEYEAKINSGDLVAISEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
RDL+R+++QPE+SYSERQLYE+AL+RM RE+AAV++++E EAI LIE NL + K
Sbjct: 121 RDLYRSEAQPEQSYSERQLYEAALDRMARELAAVDNLTETEAIKLIEQNLLKGPRRVGK 179
>gi|333026128|ref|ZP_08454192.1| putative transcriptional factor regulator [Streptomyces sp. Tu6071]
gi|332745980|gb|EGJ76421.1| putative transcriptional factor regulator [Streptomyces sp. Tu6071]
Length = 160
Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 87/158 (55%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIDAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S
Sbjct: 63 GQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + +E +A L++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160
>gi|118591279|ref|ZP_01548677.1| transcriptional regulator, CarD family protein [Stappia aggregata
IAM 12614]
gi|118435951|gb|EAV42594.1| transcriptional regulator, CarD family protein [Stappia aggregata
IAM 12614]
Length = 194
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 114/175 (65%), Positives = 140/175 (80%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M K+ A RQGF+TGE+IVYPAHGVG IT I+EQ+VAG LE VI F++DKM L+VP
Sbjct: 1 MATNTKKTAQRQGFKTGEYIVYPAHGVGQITAIEEQKVAGHSLELLVIVFEQDKMTLRVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V K +GMRKL + V++AL+ VRG+ RVKRTMWSRRAQEY+AKINSGDLI+I+EVVR
Sbjct: 61 VAKIASVGMRKLGDPAAVKKALETVRGRPRVKRTMWSRRAQEYEAKINSGDLISISEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
DL R+++QPE+SYSERQLYE+AL+RM REIAAVN SE EA+ IE NL+ S+
Sbjct: 121 DLFRSENQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAVKQIEQNLAKSPSR 175
>gi|225628327|ref|ZP_03786361.1| transcriptional regulator [Brucella ceti str. Cudo]
gi|225616173|gb|EEH13221.1| transcriptional regulator [Brucella ceti str. Cudo]
Length = 250
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 129/188 (68%), Positives = 153/188 (81%), Gaps = 2/188 (1%)
Query: 1 MTFQQKRDAMRQG-FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
M+ QQK+ + +G F+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV
Sbjct: 60 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 119
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV
Sbjct: 120 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 179
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K+
Sbjct: 180 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLAKG-PKRGKA 238
Query: 180 TSENQDKA 187
+E D
Sbjct: 239 EAELDDDE 246
>gi|320009411|gb|ADW04261.1| transcriptional regulator, CarD family [Streptomyces flavogriseus
ATCC 33331]
Length = 160
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 87/158 (55%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S
Sbjct: 63 GQEGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + +E +A L++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160
>gi|271962514|ref|YP_003336710.1| carD family transcriptional regulator [Streptosporangium roseum DSM
43021]
gi|270505689|gb|ACZ83967.1| CarD family transcriptional regulator [Streptosporangium roseum DSM
43021]
Length = 160
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 83/158 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I + + G + + V+ DK + ++VP A +G+R +
Sbjct: 3 FQVGDTVVYPHHGAARIEAITTRTIKGEERTYLVLKVDKGDLTVQVPADNAELVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ER ++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLERVFDVLRMPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A L++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLNS 160
>gi|302544415|ref|ZP_07296757.1| CarD family transcriptional regulator [Streptomyces hygroscopicus
ATCC 53653]
gi|307326973|ref|ZP_07606163.1| transcriptional regulator, CarD family [Streptomyces violaceusniger
Tu 4113]
gi|302462033|gb|EFL25126.1| CarD family transcriptional regulator [Streptomyces himastatinicus
ATCC 53653]
gi|306887271|gb|EFN18267.1| transcriptional regulator, CarD family [Streptomyces violaceusniger
Tu 4113]
Length = 160
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 87/158 (55%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ +++ G+ + V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S
Sbjct: 63 GQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A S +E +A L++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAESTNEDKAEALLDEVLAS 160
>gi|300024663|ref|YP_003757274.1| CarD family transcriptional regulator [Hyphomicrobium denitrificans
ATCC 51888]
gi|299526484|gb|ADJ24953.1| transcriptional regulator, CarD family [Hyphomicrobium
denitrificans ATCC 51888]
Length = 333
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 106/188 (56%), Positives = 140/188 (74%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ Q+K R GF+ E +VYPAHGVG I I+EQE+AGM LE FVI FDK+K+ L+VP
Sbjct: 146 LAVQKKPVNQRHGFKANEFVVYPAHGVGRIVGIEEQEIAGMSLELFVITFDKEKLTLRVP 205
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
GK +GMRKL++ V++A++ ++G+AR+KRTMWSRRAQEY AKINSGDLI+IAEVVR
Sbjct: 206 TGKLASVGMRKLADEGLVKKAMETLKGRARIKRTMWSRRAQEYVAKINSGDLISIAEVVR 265
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R+++QPE+SYSERQLYE AL+RM RE+AAV + E A+ I LS + +
Sbjct: 266 DLYRSEAQPEQSYSERQLYEDALDRMARELAAVEKLDERGAVQRITEILSKSAKGRRLAD 325
Query: 181 SENQDKAA 188
SE+ +AA
Sbjct: 326 SESVGEAA 333
>gi|120406288|ref|YP_956117.1| CarD family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119959106|gb|ABM16111.1| transcriptional regulator, CarD family [Mycobacterium vanbaalenii
PYR-1]
Length = 162
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 86/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVSQGDLTVRVPADNAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A + + +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAENTDDAKASTILDEVLAAAS 162
>gi|328542018|ref|YP_004302127.1| CarD-like transcriptional regulator family [polymorphum gilvum
SL003B-26A1]
gi|326411768|gb|ADZ68831.1| CarD-like transcriptional regulator family [Polymorphum gilvum
SL003B-26A1]
Length = 192
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 115/187 (61%), Positives = 148/187 (79%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M K+ A RQGF+TGEHIVYP+HGVG IT I+EQ VAG LE VI+F+KDKM L+VP
Sbjct: 1 MATITKKAAQRQGFKTGEHIVYPSHGVGQITAIEEQSVAGHSLELLVISFEKDKMTLRVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V K +GMRKL++A V++AL+ VRG+ R+KRTMWSRRAQEY+AKINSGDLI+I+EVVR
Sbjct: 61 VAKIATVGMRKLADAPTVKKALETVRGRPRIKRTMWSRRAQEYEAKINSGDLISISEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R+D+QPE+SYSERQLYE+AL+RM REIAAVN SE EA+ IE NL+ ++ + +
Sbjct: 121 DLYRSDTQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAVKQIEQNLARTPNRAKDAE 180
Query: 181 SENQDKA 187
+ + +
Sbjct: 181 AGDDEGE 187
>gi|158425667|ref|YP_001526959.1| transcription factor protein [Azorhizobium caulinodans ORS 571]
gi|158332556|dbj|BAF90041.1| transcription factor protein [Azorhizobium caulinodans ORS 571]
Length = 198
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 116/187 (62%), Positives = 147/187 (78%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ ++ R GF+TGEHIVYP+HGVG IT I+EQEVAG KLE FVI+F+KDKM L+VP
Sbjct: 1 MSTKKSSAQARLGFKTGEHIVYPSHGVGRITSIEEQEVAGFKLELFVISFEKDKMTLRVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V K +GMRKLSE V +AL+ ++G+ARVKRTMWSRRAQEY+AKINSGDLIAI+EVVR
Sbjct: 61 VPKIASVGMRKLSEGPVVTKALETLKGRARVKRTMWSRRAQEYEAKINSGDLIAISEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R+D+QPE+SYSERQLYE+AL+RM RE++AV +I+E E++ LIE NL +
Sbjct: 121 DLYRSDAQPEQSYSERQLYEAALDRMARELSAVQNITETESVKLIEQNLQKGPKRGAGKA 180
Query: 181 SENQDKA 187
E +D
Sbjct: 181 EEVEDSE 187
>gi|259417460|ref|ZP_05741379.1| transcriptional regulator, CarD family [Silicibacter sp. TrichCH4B]
gi|259346366|gb|EEW58180.1| transcriptional regulator, CarD family [Silicibacter sp. TrichCH4B]
Length = 193
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 105/174 (60%), Positives = 130/174 (74%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR + IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM L+VP
Sbjct: 25 MTKSKK-----LEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVP 79
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA+DIGMR LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 80 THKAVDIGMRSLSSPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVR 139
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++
Sbjct: 140 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDEIAAAKQVDEVLTSRAA 193
>gi|150398306|ref|YP_001328773.1| CarD family transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150029821|gb|ABR61938.1| transcriptional regulator, CarD family [Sinorhizobium medicae
WSM419]
Length = 189
Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 130/188 (69%), Positives = 155/188 (82%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI F+KDKM LKVP
Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR
Sbjct: 61 VAKAVGIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E +L+ + +
Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEAHLNKGPKRGKAIE 180
Query: 181 SENQDKAA 188
++ A
Sbjct: 181 EDDAQDEA 188
>gi|240172169|ref|ZP_04750828.1| transcriptional regulator, CarD family protein [Mycobacterium
kansasii ATCC 12478]
gi|296166638|ref|ZP_06849065.1| CarD family transcriptional regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295898010|gb|EFG77589.1| CarD family transcriptional regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 162
Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 86/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A S + +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
>gi|54022399|ref|YP_116641.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54013907|dbj|BAD55277.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length = 162
Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 84/160 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDRVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A + +A L++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAEGTDDGKAETLLDEVLAAAS 162
>gi|15967010|ref|NP_387363.1| hypothetical protein SMc03874 [Sinorhizobium meliloti 1021]
gi|307302478|ref|ZP_07582235.1| transcriptional regulator, CarD family [Sinorhizobium meliloti
BL225C]
gi|307316192|ref|ZP_07595636.1| transcriptional regulator, CarD family [Sinorhizobium meliloti
AK83]
gi|15076283|emb|CAC47836.1| Hypothetical protein SMc03874 [Sinorhizobium meliloti 1021]
gi|306898032|gb|EFN28774.1| transcriptional regulator, CarD family [Sinorhizobium meliloti
AK83]
gi|306903148|gb|EFN33738.1| transcriptional regulator, CarD family [Sinorhizobium meliloti
BL225C]
Length = 189
Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 131/188 (69%), Positives = 155/188 (82%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT QQK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI F+KDKM LKVP
Sbjct: 1 MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVVR
Sbjct: 61 VAKAVGIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ + +
Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLVEANLNKGPKRGKAIE 180
Query: 181 SENQDKAA 188
++ A
Sbjct: 181 EDDAQDEA 188
>gi|311896848|dbj|BAJ29256.1| putative CarD family transcriptional regulator [Kitasatospora setae
KM-6054]
Length = 160
Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 87/158 (55%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ +++ G+ + V+ + + L+VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVQQGDLTLRVPAENAEFVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I +AEVVRDL R + + S
Sbjct: 63 GQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + +E +A L++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAETLLDEVLAS 160
>gi|254504462|ref|ZP_05116613.1| CarD-like transcriptional regulator family [Labrenzia alexandrii
DFL-11]
gi|222440533|gb|EEE47212.1| CarD-like transcriptional regulator family [Labrenzia alexandrii
DFL-11]
Length = 199
Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 115/175 (65%), Positives = 139/175 (79%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M K+ A RQGF+TGE+IVYPAHGVG IT I+EQ VAG LE VI F++DKM L+VP
Sbjct: 1 MATNTKKTAQRQGFKTGEYIVYPAHGVGQITAIEEQNVAGHSLELLVIVFEQDKMTLRVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V K +GMRKL + V++AL+ V+G+ R+KRTMWSRRAQEY+AKINSGDLIAI+EVVR
Sbjct: 61 VAKIASVGMRKLGDPAAVKKALETVQGRPRIKRTMWSRRAQEYEAKINSGDLIAISEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
DL R++SQPE+SYSERQLYE+AL+RM REIAAVN SE EAI IE NL+ S+
Sbjct: 121 DLFRSESQPEQSYSERQLYEAALDRMAREIAAVNKCSETEAIKEIEQNLAKSPSR 175
>gi|56551117|ref|YP_161956.1| CarD family transcriptional regulator [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241761475|ref|ZP_04759563.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260753230|ref|YP_003226123.1| CarD family transcriptional regulator [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|56542691|gb|AAV88845.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241374382|gb|EER63879.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552593|gb|ACV75539.1| transcriptional regulator, CarD family [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 184
Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 85/181 (46%), Positives = 130/181 (71%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ F G+++VYP HGVG + E++ QE+AG +LE +V+ F+K++M L+VP KA +
Sbjct: 2 ASKALSFVVGDYVVYPKHGVGRVVELQSQEIAGTRLELYVLRFEKERMTLRVPTNKAEAV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS + ++ A++ ++GK R+KRTMWSRRAQEY+ KINSGDL++IAEVVRDL R D
Sbjct: 62 GMRKLSSSATLQEAIQTLKGKPRIKRTMWSRRAQEYETKINSGDLVSIAEVVRDLFRADD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187
QPE+SYSERQ++E A +R+ RE+ A+ + E +A++ I L + +++ ++ E +
Sbjct: 122 QPEQSYSERQIFEGAASRLARELGAMENTDEAQALDKIFDVLKAAAAEHRQAVKELAKEE 181
Query: 188 A 188
A
Sbjct: 182 A 182
>gi|297180170|gb|ADI16392.1| transcriptional regulators, similar to M. xanthus card [uncultured
bacterium HF130_12L15]
Length = 193
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 130/187 (69%), Positives = 154/187 (82%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M QQK+ A R GF+T E+IVYPAHGVG I I+EQEVAG KLE FVI F KDKM LKVP
Sbjct: 1 MATQQKKTAARNGFKTAEYIVYPAHGVGQIVAIEEQEVAGHKLELFVIDFQKDKMRLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA IGMRKLSE +V+RALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR
Sbjct: 61 VAKAASIGMRKLSETDYVDRALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ + K+
Sbjct: 121 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPRRGVKAD 180
Query: 181 SENQDKA 187
+E + +A
Sbjct: 181 NEGEPEA 187
>gi|92116128|ref|YP_575857.1| CarD family transcriptional regulator [Nitrobacter hamburgensis
X14]
gi|91799022|gb|ABE61397.1| transcriptional regulator, CarD family [Nitrobacter hamburgensis
X14]
Length = 259
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 109/177 (61%), Positives = 139/177 (78%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGFRT E +VYPAHGVG I I+EQE+AG +LE FVI F KDKM L+VP K
Sbjct: 63 KKVLTQRQGFRTNEFVVYPAHGVGQILAIEEQEIAGARLELFVINFMKDKMTLRVPTAKI 122
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
++GMRKLSE V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R
Sbjct: 123 ANVGMRKLSEPGLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 182
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181
++SQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ IE L+ + K+ S
Sbjct: 183 SESQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAVKEIEGQLAKSPRRGAKAES 239
>gi|85713774|ref|ZP_01044764.1| transcription factor CarD [Nitrobacter sp. Nb-311A]
gi|85699678|gb|EAQ37545.1| transcription factor CarD [Nitrobacter sp. Nb-311A]
Length = 220
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 109/180 (60%), Positives = 140/180 (77%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 22 KKVLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKI 81
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
++GMRKLSE V+RAL+ ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R
Sbjct: 82 ANVGMRKLSEPDLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 141
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184
++SQPE+SYSERQLYE+AL+R+ REIA V ++E EAI IE L+ + K+ + +
Sbjct: 142 SESQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAIKEIEGQLAKSPRRGAKAELDAE 201
>gi|152964866|ref|YP_001360650.1| CarD family transcriptional regulator [Kineococcus radiotolerans
SRS30216]
gi|151359383|gb|ABS02386.1| transcriptional regulator, CarD family [Kineococcus radiotolerans
SRS30216]
Length = 160
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 83/158 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK + + G + V+ + + ++VP +G+R +
Sbjct: 3 FTVGETVVYPHHGAALIEEIKTRTIKGEDKLYLVLKVAQGDLTIEVPADNVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R ++R + T WSRR + K+ SGD++ +AEVVRDL R D S
Sbjct: 63 GREGLDRVFSVLRTPYAEEPTNWSRRYKANLEKLASGDVVKVAEVVRDLWRRDQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + +E +A +L++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAENTNEDKAESLLDEVLAS 160
>gi|312138097|ref|YP_004005433.1| card like transcriptional regulator [Rhodococcus equi 103S]
gi|325674999|ref|ZP_08154686.1| CarD family transcriptional regulator [Rhodococcus equi ATCC 33707]
gi|311887436|emb|CBH46748.1| CarD like transcriptional regulator [Rhodococcus equi 103S]
gi|325554585|gb|EGD24260.1| CarD family transcriptional regulator [Rhodococcus equi ATCC 33707]
Length = 162
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 84/160 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A + +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAEGTDDAKAEIILDEVLAAAS 162
>gi|15610719|ref|NP_218100.1| transcription factor [Mycobacterium tuberculosis H37Rv]
gi|15843196|ref|NP_338233.1| hypothetical protein MT3689 [Mycobacterium tuberculosis CDC1551]
gi|31794760|ref|NP_857253.1| putative transcription factor [Mycobacterium bovis AF2122/97]
gi|41406573|ref|NP_959409.1| hypothetical protein MAP0475 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118464023|ref|YP_879850.1| CarD family transcriptional regulator [Mycobacterium avium 104]
gi|118619338|ref|YP_907670.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|121639503|ref|YP_979727.1| putative transcription factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148663447|ref|YP_001284970.1| putative transcription factor [Mycobacterium tuberculosis H37Ra]
gi|148824789|ref|YP_001289543.1| transcription factor [Mycobacterium tuberculosis F11]
gi|167967112|ref|ZP_02549389.1| hypothetical transcription factor [Mycobacterium tuberculosis
H37Ra]
gi|183985051|ref|YP_001853342.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|215405632|ref|ZP_03417813.1| transcriptional regulatory protein [Mycobacterium tuberculosis
02_1987]
gi|215413503|ref|ZP_03422180.1| transcriptional regulatory protein [Mycobacterium tuberculosis
94_M4241A]
gi|215429084|ref|ZP_03427003.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92]
gi|215432556|ref|ZP_03430475.1| transcriptional regulatory protein [Mycobacterium tuberculosis
EAS054]
gi|215447917|ref|ZP_03434669.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
gi|218755367|ref|ZP_03534163.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
1503]
gi|219559660|ref|ZP_03538736.1| transcriptional regulatory protein [Mycobacterium tuberculosis T17]
gi|253800624|ref|YP_003033625.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|254366146|ref|ZP_04982190.1| hypothetical transcription factor [Mycobacterium tuberculosis str.
Haarlem]
gi|254552692|ref|ZP_05143139.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|254773528|ref|ZP_05215044.1| transcriptional regulatory protein [Mycobacterium avium subsp.
avium ATCC 25291]
gi|254822710|ref|ZP_05227711.1| transcriptional regulatory protein [Mycobacterium intracellulare
ATCC 13950]
gi|260184500|ref|ZP_05761974.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|260198625|ref|ZP_05766116.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|260202771|ref|ZP_05770262.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|289441013|ref|ZP_06430757.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289445177|ref|ZP_06434921.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289555847|ref|ZP_06445057.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|289571825|ref|ZP_06452052.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289572236|ref|ZP_06452463.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|289747420|ref|ZP_06506798.1| transcription factor [Mycobacterium tuberculosis 02_1987]
gi|289752298|ref|ZP_06511676.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289755712|ref|ZP_06515090.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|289759741|ref|ZP_06519119.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
gi|289763762|ref|ZP_06523140.1| transcription factor [Mycobacterium tuberculosis GM 1503]
gi|294993703|ref|ZP_06799394.1| transcriptional regulator [Mycobacterium tuberculosis 210]
gi|297636258|ref|ZP_06954038.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
gi|297733251|ref|ZP_06962369.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
gi|298527062|ref|ZP_07014471.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
gi|306777937|ref|ZP_07416274.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
gi|306778466|ref|ZP_07416803.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
gi|306786490|ref|ZP_07424812.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
gi|306790855|ref|ZP_07429177.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|306791178|ref|ZP_07429480.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|306795963|ref|ZP_07434265.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
gi|306801211|ref|ZP_07437879.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
gi|306805423|ref|ZP_07442091.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
gi|306969715|ref|ZP_07482376.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
gi|306974055|ref|ZP_07486716.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
gi|307081764|ref|ZP_07490934.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
gi|307086380|ref|ZP_07495493.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
gi|313660581|ref|ZP_07817461.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
gi|3261556|emb|CAA17859.1| POSSIBLE TRANSCRIPTION FACTOR [Mycobacterium tuberculosis H37Rv]
gi|13883549|gb|AAK48047.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31620357|emb|CAD95800.1| PUTATIVE TRANSCRIPTION FACTOR [Mycobacterium bovis AF2122/97]
gi|41394922|gb|AAS02792.1| hypothetical protein MAP_0475 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118165310|gb|ABK66207.1| transcriptional regulator, CarD family protein [Mycobacterium avium
104]
gi|118571448|gb|ABL06199.1| conserved transcriptional regulatory protein [Mycobacterium
ulcerans Agy99]
gi|121495151|emb|CAL73637.1| Putative transcription factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|134151658|gb|EBA43703.1| hypothetical transcription factor [Mycobacterium tuberculosis str.
Haarlem]
gi|148507599|gb|ABQ75408.1| putative transcription factor [Mycobacterium tuberculosis H37Ra]
gi|148723316|gb|ABR07941.1| hypothetical transcription factor [Mycobacterium tuberculosis F11]
gi|183178377|gb|ACC43487.1| conserved transcriptional regulatory protein [Mycobacterium marinum
M]
gi|253322127|gb|ACT26730.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|289413932|gb|EFD11172.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289418135|gb|EFD15336.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289440479|gb|EFD22972.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|289536667|gb|EFD41245.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|289545579|gb|EFD49227.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289687948|gb|EFD55436.1| transcription factor [Mycobacterium tuberculosis 02_1987]
gi|289692885|gb|EFD60314.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289696299|gb|EFD63728.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|289711268|gb|EFD75284.1| transcription factor [Mycobacterium tuberculosis GM 1503]
gi|289715305|gb|EFD79317.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
gi|298496856|gb|EFI32150.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
gi|308213809|gb|EFO73208.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
gi|308328563|gb|EFP17414.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
gi|308328978|gb|EFP17829.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
gi|308332800|gb|EFP21651.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|308340291|gb|EFP29142.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|308343630|gb|EFP32481.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
gi|308348097|gb|EFP36948.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
gi|308352020|gb|EFP40871.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
gi|308352807|gb|EFP41658.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
gi|308356657|gb|EFP45508.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
gi|308360612|gb|EFP49463.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
gi|308364200|gb|EFP53051.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
gi|323717777|gb|EGB26975.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
gi|326905422|gb|EGE52355.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
gi|328460355|gb|AEB05778.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
Length = 162
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 86/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A S + +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
>gi|72163306|ref|YP_290963.1| CarD family transcriptional regulator [Thermobifida fusca YX]
gi|71917038|gb|AAZ56940.1| transcriptional regulator, CarD family [Thermobifida fusca YX]
Length = 160
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 85/157 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + + V+ DK + ++VP A ++G+R +
Sbjct: 3 FKVGDTVVYPHHGAARIEAIETRTIKGEEKTYLVLKVDKGDLTVRVPADNAEEVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ A +V E+A +E +A L++ L+
Sbjct: 123 GEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLA 159
>gi|297563240|ref|YP_003682214.1| CarD family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847688|gb|ADH69708.1| transcriptional regulator, CarD family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 160
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 83/156 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + V+ DK + ++VP A D+G+R +
Sbjct: 3 FKVGDTVVYPHHGAARIEAIETRNIKGEDRIYLVLRVDKGDLTVRVPAANAEDVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLDKVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
E+++ A +V E+A +E +A L++ L
Sbjct: 123 GEKRMLAKARQILVSELALAEKTNEDKAEALLDEVL 158
>gi|126738718|ref|ZP_01754414.1| transcriptional regulator, CarD family protein [Roseobacter sp.
SK209-2-6]
gi|126719899|gb|EBA16606.1| transcriptional regulator, CarD family protein [Roseobacter sp.
SK209-2-6]
Length = 169
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 102/174 (58%), Positives = 129/174 (74%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR +++VYPAHGVG I I+EQEVAG LE FVI F+KDKM L+VP
Sbjct: 1 MTKSKK-----LEFRPNDYVVYPAHGVGQIISIEEQEVAGFALELFVITFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA ++GMR LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 TNKATEVGMRSLSSPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGADEILAAKQVDEVLTSRAA 169
>gi|296138335|ref|YP_003645578.1| transcriptional regulator, CarD family [Tsukamurella paurometabola
DSM 20162]
gi|296026469|gb|ADG77239.1| transcriptional regulator, CarD family [Tsukamurella paurometabola
DSM 20162]
Length = 162
Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 86/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + +KVP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIEIKTIGGREREYLVLKVAQGDLTVKVPAENAEVVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A + + +A +L++ L++ S
Sbjct: 123 GEKRMLTKARQILVGELALAEATDDGKAESLLDEALAAAS 162
>gi|313902845|ref|ZP_07836242.1| transcriptional regulator, CarD family [Thermaerobacter
subterraneus DSM 13965]
gi|313466965|gb|EFR62482.1| transcriptional regulator, CarD family [Thermaerobacter
subterraneus DSM 13965]
Length = 166
Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 80/162 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG G I I+E+EV G + ++++ M L +P A G+R +
Sbjct: 1 MFQVGDRVVYPMHGAGVIEAIEEREVLGERHRYYILRLPVGDMRLMIPTASAPQSGLRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
A V L+ + + W+ R +E+ K+ SGD++ +A VVR+L S
Sbjct: 61 IPADQVPAVLEALCEPVPPLDSNWNHRYREHADKLRSGDILEVAVVVRNLSARQKARGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
ER+L + A +V E+A + EA L+E +L +
Sbjct: 121 GGERRLLDQARQILVSELALAGGMGRDEADALVERHLGAAEP 162
>gi|56696304|ref|YP_166661.1| CarD family transcriptional regulator [Ruegeria pomeroyi DSS-3]
gi|56678041|gb|AAV94707.1| transcriptional regulator, CarD family [Ruegeria pomeroyi DSS-3]
Length = 169
Score = 144 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 101/174 (58%), Positives = 130/174 (74%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR +++VYPAHGVG I I+EQEVAG KLE FVI+F+KDKM L+VP
Sbjct: 1 MTKSKK-----LEFRPNDYVVYPAHGVGQILSIEEQEVAGFKLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA + G+R LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 56 TNKATESGLRSLSSPDVISQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGADEMAAAKQVDEVLTSRAA 169
>gi|108801703|ref|YP_641900.1| CarD family transcriptional regulator [Mycobacterium sp. MCS]
gi|119870854|ref|YP_940806.1| CarD family transcriptional regulator [Mycobacterium sp. KMS]
gi|126437690|ref|YP_001073381.1| CarD family transcriptional regulator [Mycobacterium sp. JLS]
gi|108772122|gb|ABG10844.1| transcriptional regulator, CarD family [Mycobacterium sp. MCS]
gi|119696943|gb|ABL94016.1| transcriptional regulator, CarD family [Mycobacterium sp. KMS]
gi|126237490|gb|ABO00891.1| transcriptional regulator, CarD family [Mycobacterium sp. JLS]
Length = 162
Score = 144 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 87/160 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A ++ + +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAENVEDEKATIILDEALAAAS 162
>gi|317126037|ref|YP_004100149.1| CarD family transcriptional regulator [Intrasporangium calvum DSM
43043]
gi|315590125|gb|ADU49422.1| transcriptional regulator, CarD family [Intrasporangium calvum DSM
43043]
Length = 160
Score = 144 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 81/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I EI + + G + + + + ++VP +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEEINTRTIKGEDKLYLKLKVAQGDLTIEVPAENCDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D S
Sbjct: 63 GQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E +A ++++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAEKTDEDKAESILDEVLAS 160
>gi|111225860|ref|YP_716654.1| putative CarD-like transcriptional regulator [Frankia alni ACN14a]
gi|111153392|emb|CAJ65148.1| putative CarD-like transcriptional regulator [Frankia alni ACN14a]
Length = 160
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + + V+ + + ++VP +G+R +
Sbjct: 3 FQVGETVVYPHHGAALIDAIETRVIKGEERLYLVLKVAQGDLTVRVPADNVGMVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ER +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ A +V E+A +E +A +++ L+
Sbjct: 123 GEKRMLSKARQILVSELALAEGTNEDKAEAMLDEVLA 159
>gi|84687443|ref|ZP_01015321.1| transcriptional regulator, CarD family protein [Maritimibacter
alkaliphilus HTCC2654]
gi|84664601|gb|EAQ11087.1| transcriptional regulator, CarD family protein [Rhodobacterales
bacterium HTCC2654]
Length = 169
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 101/174 (58%), Positives = 129/174 (74%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ +K FR E++VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP
Sbjct: 1 MSKAKK-----LDFRPNEYVVYPAHGVGQIVSIEEQEVAGLTLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA ++GMR LS V +A+ ++GKARVKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 56 TNKATEVGMRSLSSPDVVSKAMDTLKGKARVKRAMWSRRAQEYEQKINSGDLISIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHR D Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++
Sbjct: 116 DLHRNDDQREQSYSERQLYEAALERLTREVAAVSGGDEAAAQEKVDGVLTSRAA 169
>gi|220921710|ref|YP_002497011.1| CarD family transcriptional regulator [Methylobacterium nodulans
ORS 2060]
gi|219946316|gb|ACL56708.1| transcriptional regulator, CarD family [Methylobacterium nodulans
ORS 2060]
Length = 197
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 116/187 (62%), Positives = 151/187 (80%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K A RQGF+TGE IVYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP
Sbjct: 1 MTTAKKTTAARQGFKTGEAIVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +GMRKL+E V++AL ++ G+ARVKRTMWSRRAQEY+AKINSGDLIA+ EVVR
Sbjct: 61 TAKANAVGMRKLAEPELVKKALDVLTGRARVKRTMWSRRAQEYEAKINSGDLIAVTEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R+++QPE+SYSERQLYE+AL+R+VREIAAVN I++ E++ LIE +L+ + + +
Sbjct: 121 DLYRSEAQPEQSYSERQLYEAALDRVVREIAAVNKITDTESLKLIEQSLAKSPRRAKSAE 180
Query: 181 SENQDKA 187
E + A
Sbjct: 181 VEGEPDA 187
>gi|260434064|ref|ZP_05788035.1| transcriptional regulator, CarD family [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417892|gb|EEX11151.1| transcriptional regulator, CarD family [Silicibacter
lacuscaerulensis ITI-1157]
Length = 169
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 101/174 (58%), Positives = 131/174 (75%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ +K FR + +VYPAHGVG I I+EQEVAG KLE FVI+F+KDKM L+VP
Sbjct: 1 MSKSKK-----LEFRPNDFVVYPAHGVGKIISIEEQEVAGFKLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA + G+R LS +++A+K +RGKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 56 TNKATESGLRSLSTPDVIDQAMKTLRGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL+R+ RE+AAV+ E A ++ L+S+++
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALDRLTREVAAVSGADEIAAAKQVDEVLTSRAA 169
>gi|119384562|ref|YP_915618.1| CarD family transcriptional regulator [Paracoccus denitrificans
PD1222]
gi|119374329|gb|ABL69922.1| transcriptional regulator, CarD family [Paracoccus denitrificans
PD1222]
Length = 169
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 101/174 (58%), Positives = 131/174 (75%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ +K FR + +VYP HGVG I I+EQEVAG++LE FVI+F+KDKM L+VP
Sbjct: 1 MSKAKK-----TEFRPDDFVVYPTHGVGRIVSIEEQEVAGLRLEMFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+A +IGMR LS VERAL ++GKARVKR MWSRRAQEY+ KINSGDL++IAEVVR
Sbjct: 56 TARATEIGMRGLSTPDLVERALDTLKGKARVKRAMWSRRAQEYEQKINSGDLMSIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHR D Q E+SYSERQLYE+AL+R+ RE+AAV+ + E A +E L+++++
Sbjct: 116 DLHRNDDQREQSYSERQLYEAALDRLTREVAAVSGMDEAGAQKRVETVLTARAA 169
>gi|331699819|ref|YP_004336058.1| CarD family transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
gi|326954508|gb|AEA28205.1| transcriptional regulator, CarD family [Pseudonocardia
dioxanivorans CB1190]
Length = 164
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 83/160 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEAIETRTIKGEERKYLVLKVAQGDLTVRVPAENAEVVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A E A L++ L++ +
Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEERAEVLLDEVLATAA 162
>gi|254511434|ref|ZP_05123501.1| transcriptional regulator, CarD family [Rhodobacteraceae bacterium
KLH11]
gi|221535145|gb|EEE38133.1| transcriptional regulator, CarD family [Rhodobacteraceae bacterium
KLH11]
Length = 170
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 97/174 (55%), Positives = 128/174 (73%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ +K FR +++VYPAHGVG I I+EQ+VAG LE FVI+F+KDKM L+VP
Sbjct: 1 MSKSKK-----LEFRPNDYVVYPAHGVGQIISIEEQDVAGFSLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K + G+R LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 56 TNKVTESGLRSLSSPDVISQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGADEISAAKQVDEVLTSRAA 169
>gi|146337765|ref|YP_001202813.1| CarD family transcriptional regulator [Bradyrhizobium sp. ORS278]
gi|146190571|emb|CAL74573.1| putative transcriptional regulatory protein, CarD family
[Bradyrhizobium sp. ORS278]
Length = 204
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 106/179 (59%), Positives = 138/179 (77%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K ++
Sbjct: 2 PTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R++S
Sbjct: 62 GMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSES 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186
QPE+SYSERQLYE+AL+R+ REIA V +E EA+ IE L+ + K+ ++ +
Sbjct: 122 QPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIETQLAKSPRRGAKTEADAVAE 180
>gi|89055799|ref|YP_511250.1| CarD family transcriptional regulator [Jannaschia sp. CCS1]
gi|88865348|gb|ABD56225.1| transcriptional regulator, CarD family [Jannaschia sp. CCS1]
Length = 172
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 101/172 (58%), Positives = 124/172 (72%), Gaps = 4/172 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K F +++VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP
Sbjct: 1 MTKARKT----LDFSPNDYVVYPAHGVGQIITIEEQEVAGLNLELFVISFEKDKMTLRVP 56
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA ++GMR LS+ V +AL ++GKARVKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 57 TAKATEVGMRPLSDPTVVSKALDTLKGKARVKRAMWSRRAQEYEQKINSGDLISIAEVVR 116
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLHR D Q E+SYSERQLYE+AL R+ RE+A V I E A + LS +
Sbjct: 117 DLHRADDQREQSYSERQLYEAALERLTRELAVVKGIDEAGAGAQLVDVLSKR 168
>gi|163738513|ref|ZP_02145928.1| transcriptional regulator, CarD family protein [Phaeobacter
gallaeciensis BS107]
gi|163743575|ref|ZP_02150952.1| transcriptional regulator, CarD family protein [Phaeobacter
gallaeciensis 2.10]
gi|161383160|gb|EDQ07552.1| transcriptional regulator, CarD family protein [Phaeobacter
gallaeciensis 2.10]
gi|161388434|gb|EDQ12788.1| transcriptional regulator, CarD family protein [Phaeobacter
gallaeciensis BS107]
Length = 170
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 101/174 (58%), Positives = 128/174 (73%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR +++VYPAHGVG I I+EQEVAG LE FVI F+KDKM L+VP
Sbjct: 1 MTKSKK-----PEFRPDDYVVYPAHGVGQIISIEEQEVAGFALELFVITFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS + +A+ ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 56 TNKATEIGMRSLSSPDVIAKAMTTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDEISAAKQVDEVLTSRAA 169
>gi|134097051|ref|YP_001102712.1| transcription regulator CarD [Saccharopolyspora erythraea NRRL
2338]
gi|291007008|ref|ZP_06564981.1| transcription regulator CarD [Saccharopolyspora erythraea NRRL
2338]
gi|133909674|emb|CAL99786.1| CarD family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
Length = 162
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 82/159 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R ++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDRVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A +V E+A E +A L++ L++
Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEGKAETLLDEVLATA 161
>gi|284989246|ref|YP_003407800.1| CarD family transcriptional regulator [Geodermatophilus obscurus
DSM 43160]
gi|284062491|gb|ADB73429.1| transcriptional regulator, CarD family [Geodermatophilus obscurus
DSM 43160]
Length = 160
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 82/159 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
GF GE +VYP HG I I+ + + G + + V+ + + ++VP A +G+R +
Sbjct: 2 GFTVGETVVYPHHGAALIEAIETRVIKGEERAYLVLKVAQGDLTVRVPADNAEIVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ R +++R + T WSRR + K+ SGD+ +AEVVRDL R D S
Sbjct: 62 VGQDGLNRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A L++ L+S
Sbjct: 122 AGEKRMLSKARQILVSELALAEGTNEDKAEVLLDEVLAS 160
>gi|224992000|ref|YP_002646689.1| putative transcription factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|224775115|dbj|BAH27921.1| putative transcription factor [Mycobacterium bovis BCG str. Tokyo
172]
Length = 162
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 86/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPRHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A S + +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
>gi|257057465|ref|YP_003135297.1| transcriptional regulator, CarD family [Saccharomonospora viridis
DSM 43017]
gi|256587337|gb|ACU98470.1| transcriptional regulator, CarD family [Saccharomonospora viridis
DSM 43017]
Length = 163
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 80/159 (50%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ R ++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLNRVFDVLRAPHTDEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A +V E+A E +A L++ L +
Sbjct: 123 GEKRMLAKARQILVSELALAEGTDESKAEVLLDEVLETA 161
>gi|312194274|ref|YP_004014335.1| CarD family transcriptional regulator [Frankia sp. EuI1c]
gi|311225610|gb|ADP78465.1| transcriptional regulator, CarD family [Frankia sp. EuI1c]
Length = 160
Score = 143 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + + V+ + + ++VP +G+R +
Sbjct: 3 FQVGETVVYPHHGAALIDAIETRVIKGEEKLYLVLKVAQGDLTVRVPADNIGMVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ER +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ A +V E+A +E +A +++ L+
Sbjct: 123 GEKRMLSKARQILVSELALAEGTNEDKAEAMLDEVLA 159
>gi|86742930|ref|YP_483330.1| CarD family transcriptional regulator [Frankia sp. CcI3]
gi|158312226|ref|YP_001504734.1| CarD family transcriptional regulator [Frankia sp. EAN1pec]
gi|288923580|ref|ZP_06417692.1| transcriptional regulator, CarD family [Frankia sp. EUN1f]
gi|289642338|ref|ZP_06474486.1| transcriptional regulator, CarD family [Frankia symbiont of Datisca
glomerata]
gi|86569792|gb|ABD13601.1| transcriptional regulator, CarD family [Frankia sp. CcI3]
gi|158107631|gb|ABW09828.1| transcriptional regulator, CarD family [Frankia sp. EAN1pec]
gi|288345079|gb|EFC79496.1| transcriptional regulator, CarD family [Frankia sp. EUN1f]
gi|289507870|gb|EFD28821.1| transcriptional regulator, CarD family [Frankia symbiont of Datisca
glomerata]
Length = 160
Score = 143 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + + V+ + + ++VP +G+R +
Sbjct: 3 FQVGETVVYPHHGAALIDAIETRVIKGEEKLYLVLKVAQGDLTVRVPADNVGMVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ER +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ A +V E+A +E +A +++ L+
Sbjct: 123 GEKRMLSKARQILVSELALAEGTNEDKAEAMLDEVLA 159
>gi|327191760|gb|EGE58762.1| CarD family transcriptional regulator [Rhizobium etli CNPAF512]
Length = 199
Score = 143 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 132/189 (69%), Positives = 155/189 (82%), Gaps = 1/189 (0%)
Query: 1 MTFQQKR-DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT QQK+ R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV
Sbjct: 10 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 69
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV
Sbjct: 70 PVAKAMSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 129
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ + +
Sbjct: 130 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLNKGPKRGKAI 189
Query: 180 TSENQDKAA 188
++ A
Sbjct: 190 EEDDSQDEA 198
>gi|148258713|ref|YP_001243298.1| CarD family transcriptional regulator [Bradyrhizobium sp. BTAi1]
gi|146410886|gb|ABQ39392.1| transcriptional regulator, CarD family [Bradyrhizobium sp. BTAi1]
Length = 278
Score = 143 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 107/183 (58%), Positives = 141/183 (77%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
++K RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 72 EKKLPTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAK 131
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+
Sbjct: 132 VANVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLY 191
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
R++SQPE+SYSERQLYE+AL+R+ REIA V +E EA+ IE L+ + K+ ++
Sbjct: 192 RSESQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIETQLAKSPRRGAKTEADA 251
Query: 184 QDK 186
+
Sbjct: 252 VAE 254
>gi|190893877|ref|YP_001980419.1| transcriptional regulator protein, CarD family [Rhizobium etli CIAT
652]
gi|190699156|gb|ACE93241.1| probable transcriptional regulator protein, CarD family [Rhizobium
etli CIAT 652]
Length = 190
Score = 143 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 130/189 (68%), Positives = 155/189 (82%), Gaps = 1/189 (0%)
Query: 1 MTFQQKR-DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT QQK+ R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV
Sbjct: 1 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV
Sbjct: 61 PVAKAMSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+ M REIAAVN++SE +A+ L+E NL+ + +
Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDSMAREIAAVNNMSETDAVRLVETNLNKGPKRGKAI 180
Query: 180 TSENQDKAA 188
++ A
Sbjct: 181 EEDDSQDEA 189
>gi|254563203|ref|YP_003070298.1| carD family transcriptional regulator [Methylobacterium extorquens
DM4]
gi|254270481|emb|CAX26481.1| transcriptional regulator, CarD family [Methylobacterium extorquens
DM4]
Length = 224
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 113/196 (57%), Positives = 151/196 (77%), Gaps = 8/196 (4%)
Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT +K RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+V
Sbjct: 29 MTTAKKTTVAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV 88
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI++ EVV
Sbjct: 89 PTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLISVTEVV 148
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ + +
Sbjct: 149 RDLFRSEAQPEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLAKSPRRAKAD 208
Query: 180 -------TSENQDKAA 188
+ Q++AA
Sbjct: 209 AEADAEGEDDVQEEAA 224
>gi|149202302|ref|ZP_01879275.1| transcriptional regulator, CarD family protein [Roseovarius sp.
TM1035]
gi|149144400|gb|EDM32431.1| transcriptional regulator, CarD family protein [Roseovarius sp.
TM1035]
Length = 169
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 98/167 (58%), Positives = 126/167 (75%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ FR +++VYPAHGVG I I+EQE+AG+ LE FVI+F+KDKM L+VP KA +I
Sbjct: 3 KTKKSEFRPDDYVVYPAHGVGQIVSIEEQEIAGITLELFVISFEKDKMTLRVPTNKATEI 62
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMR LS V +A+ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR+D
Sbjct: 63 GMRGLSSPDVVSKAMSTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRSDD 122
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L S+++
Sbjct: 123 QREQSYSERQLYEAALERLTREVAAVSGGDEVLAARKVDEVLVSRAA 169
>gi|319948870|ref|ZP_08022983.1| CarD family transcriptional regulator [Dietzia cinnamea P4]
gi|319437472|gb|EFV92479.1| CarD family transcriptional regulator [Dietzia cinnamea P4]
Length = 164
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 85/162 (52%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG TI I+ + V G + E+ V+ + + +KVP A +G+R +
Sbjct: 2 EFKVGDTVVYPHHGAATIQAIEMRTVRGTEKEYLVLKVSQGDLTVKVPAENAEYVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +++ +++R + + T WSRR + K+ SGD+ +AEVVRDL R D S
Sbjct: 62 VDQAGLDKVFEVLRTEHAEEPTNWSRRYKANGEKLASGDVNKVAEVVRDLWRRDLDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ A +V E+A E A L++ L S +
Sbjct: 122 AGEKRMLAKARQVLVGELALAERSDEERADALLDEVLGSAAP 163
>gi|325294135|ref|YP_004279999.1| transcriptional regulator, CarD family [Agrobacterium sp. H13-3]
gi|325061988|gb|ADY65679.1| transcriptional regulator, CarD family [Agrobacterium sp. H13-3]
Length = 189
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 133/188 (70%), Positives = 156/188 (82%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT QQK+ GF+TGE IVYPAHGVGTI+ I+EQEVAGMKLE FVI F+KDKM LKVP
Sbjct: 1 MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR
Sbjct: 61 VAKAVSIGMRKLSEGDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+EVNL+ + +
Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNLAKGPKRGKAVE 180
Query: 181 SENQDKAA 188
++ + A
Sbjct: 181 EDDSQEEA 188
>gi|319781058|ref|YP_004140534.1| transcription factor CarD [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166946|gb|ADV10484.1| transcription factor CarD [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 193
Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 129/179 (72%), Positives = 149/179 (83%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+T Q+K A R GF+TGE+IVYPAHGVG I I EQEVAG KLE FVI F KDKM LKVP
Sbjct: 4 ITPQKKSTAARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFSKDKMRLKVP 63
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR
Sbjct: 64 VAKATSIGMRKLSEEDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 123
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ + K+
Sbjct: 124 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPKRGAKA 182
>gi|144899571|emb|CAM76435.1| Transcription factor CarD-like [Magnetospirillum gryphiswaldense
MSR-1]
Length = 164
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 86/160 (53%), Positives = 118/160 (73%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+++VYP HGVG + I+ QE+ GMKL+ FVI F++D+M L+VPV KA G+RKL
Sbjct: 5 SFAEGDYVVYPTHGVGQVMAIENQEIGGMKLQLFVITFERDRMTLRVPVAKATKSGLRKL 64
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S ++ AL ++G+A+VKRTMWSRRAQEY+AKINSGD ++IAEVVRDL+R +QP++S
Sbjct: 65 SSRKDMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLYRNANQPDQS 124
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
YSERQ+YE+AL R+ E+AAV I A + L++
Sbjct: 125 YSERQIYEAALERLAAELAAVEGIDAEAAAAKLCELLAAA 164
>gi|159043338|ref|YP_001532132.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
gi|157911098|gb|ABV92531.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
Length = 170
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 101/168 (60%), Positives = 125/168 (74%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ FR E++VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP KA +
Sbjct: 3 KANKSNEFRPNEYVVYPAHGVGQIVSIEEQEVAGLTLELFVISFEKDKMTLRVPTNKATE 62
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+GMR LS V +A+ ++GKARVKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D
Sbjct: 63 VGMRSLSSPDIVSKAMDTLKGKARVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRND 122
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Q E+SYSERQLYE+AL R+ REIAAV+ E A ++ L S+++
Sbjct: 123 DQREQSYSERQLYEAALERLTREIAAVSGDDEGNAQKRVDDVLVSRAA 170
>gi|27375267|ref|NP_766796.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
gi|27348403|dbj|BAC45421.1| bll0156 [Bradyrhizobium japonicum USDA 110]
Length = 328
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 108/185 (58%), Positives = 140/185 (75%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
++K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 125 EKKVVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAK 184
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
++GMRKLSE V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+
Sbjct: 185 VANVGMRKLSEPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLY 244
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
R++SQPE+SYSERQLYE+AL+R+ REIA V +E EA+ IE L+ + K+ +
Sbjct: 245 RSESQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIEAQLAKSPRRNAKAEATE 304
Query: 184 QDKAA 188
+ A
Sbjct: 305 GEADA 309
>gi|86359604|ref|YP_471496.1| CarD family transcriptional regulator [Rhizobium etli CFN 42]
gi|86283706|gb|ABC92769.1| probable transcriptional regulator protein, CarD family [Rhizobium
etli CFN 42]
Length = 190
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 132/189 (69%), Positives = 155/189 (82%), Gaps = 1/189 (0%)
Query: 1 MTFQQKR-DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT QQK+ R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV
Sbjct: 1 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA+ IGMRKLSE FV+RALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV
Sbjct: 61 PVAKAMSIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ + +
Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLNKGPKRGKAI 180
Query: 180 TSENQDKAA 188
++ A
Sbjct: 181 EEDDSQDEA 189
>gi|300790484|ref|YP_003770775.1| CarD family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299799998|gb|ADJ50373.1| CarD family transcriptional regulator [Amycolatopsis mediterranei
U32]
Length = 163
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 81/159 (50%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDKVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A +V E+A E +A L++ L +
Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEDKAEVLLDEVLETA 161
>gi|260426540|ref|ZP_05780519.1| transcriptional regulator, CarD family [Citreicella sp. SE45]
gi|260421032|gb|EEX14283.1| transcriptional regulator, CarD family [Citreicella sp. SE45]
Length = 170
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 102/169 (60%), Positives = 128/169 (75%), Gaps = 4/169 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT + K++ FR +++VYPAHGVG I I+EQE+AG+KLE FVI+F+KDKM L+VP
Sbjct: 1 MTTKTKKN----EFRPNDYVVYPAHGVGQIVLIEEQEIAGIKLELFVISFEKDKMTLRVP 56
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS V +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 57 THKASEIGMRSLSSPDVVSQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 116
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
DLHR D Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L
Sbjct: 117 DLHRADDQREQSYSERQLYEAALERLTREVAAVSGGDEVAAARQVDEVL 165
>gi|256374519|ref|YP_003098179.1| CarD family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255918822|gb|ACU34333.1| transcriptional regulator, CarD family [Actinosynnema mirum DSM
43827]
Length = 162
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 84/160 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDKVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A E +A L++ L++ S
Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEDKAEVLLDEVLATAS 162
>gi|15890014|ref|NP_355695.1| CarD family transcriptional regulator [Agrobacterium tumefaciens
str. C58]
gi|15157987|gb|AAK88480.1| transcriptional regulator, CarD family [Agrobacterium tumefaciens
str. C58]
Length = 189
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 133/188 (70%), Positives = 155/188 (82%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT QQK+ GF+TGE IVYPAHGVGTI+ I+EQEVAGMKLE FVI F+KDKM LKVP
Sbjct: 1 MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR
Sbjct: 61 VAKAVSIGMRKLSEGDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+EVNL+ + +
Sbjct: 121 DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNLAKGPKRGKTVE 180
Query: 181 SENQDKAA 188
++ A
Sbjct: 181 EDDSQDEA 188
>gi|77462983|ref|YP_352487.1| CarD family transcriptional regulator [Rhodobacter sphaeroides
2.4.1]
gi|126461857|ref|YP_001042971.1| CarD family transcriptional regulator [Rhodobacter sphaeroides ATCC
17029]
gi|146277597|ref|YP_001167756.1| CarD family transcriptional regulator [Rhodobacter sphaeroides ATCC
17025]
gi|221638839|ref|YP_002525101.1| CarD family transcriptional regulator [Rhodobacter sphaeroides
KD131]
gi|332557859|ref|ZP_08412181.1| Transcriptional regulator, CarD family protein [Rhodobacter
sphaeroides WS8N]
gi|77387401|gb|ABA78586.1| transcriptional regulator, CarD family [Rhodobacter sphaeroides
2.4.1]
gi|126103521|gb|ABN76199.1| transcriptional regulator, CarD family [Rhodobacter sphaeroides
ATCC 17029]
gi|145555838|gb|ABP70451.1| transcriptional regulator, CarD family [Rhodobacter sphaeroides
ATCC 17025]
gi|221159620|gb|ACM00600.1| Transcriptional regulator, CarD family [Rhodobacter sphaeroides
KD131]
gi|332275571|gb|EGJ20886.1| Transcriptional regulator, CarD family protein [Rhodobacter
sphaeroides WS8N]
Length = 169
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 102/174 (58%), Positives = 130/174 (74%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR E +VYPAHGVG I I+EQE+AG++LE FVI+F+KDKM L+VP
Sbjct: 1 MTKTKK-----PEFRPNEFVVYPAHGVGRIISIEEQEIAGIRLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA ++GMR LS V +AL ++GKARVKR MWSRRAQEY+ KINSGDL++IAEVVR
Sbjct: 56 THKATEVGMRSLSTPDVVTKALDTLKGKARVKRAMWSRRAQEYEQKINSGDLMSIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ + E A ++ L S+++
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGVDEAGAQKAVDAVLVSRAA 169
>gi|254463989|ref|ZP_05077400.1| transcriptional regulator, CarD family [Rhodobacterales bacterium
Y4I]
gi|206684897|gb|EDZ45379.1| transcriptional regulator, CarD family [Rhodobacterales bacterium
Y4I]
Length = 169
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 102/174 (58%), Positives = 130/174 (74%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR +++VYPAHGVG I I+EQEVAG LE FVI F+KDKM L+VP
Sbjct: 1 MTKSKK-----LEFRPDDYVVYPAHGVGQIISIEEQEVAGFALELFVITFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA ++GMR LS +E+A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 56 TNKATEVGMRSLSSPDVIEQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGNDEIAAAKQVDEVLTSRAA 169
>gi|288957083|ref|YP_003447424.1| transcriptional regulator [Azospirillum sp. B510]
gi|288909391|dbj|BAI70880.1| transcriptional regulator [Azospirillum sp. B510]
Length = 166
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 82/165 (49%), Positives = 122/165 (73%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + F G+ +VYPAHGVG + I+ +AG++++ + I F+K++M LKVPV KA + G
Sbjct: 2 SNKLDFDAGDFVVYPAHGVGRVEGIETHSIAGLEVQLYAITFEKERMTLKVPVTKARNAG 61
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R+LS ++ AL+ ++G++RV+RTMWSRRAQEY+AKINSGD ++IAEVVRDL+R Q
Sbjct: 62 LRRLSSKDRIKVALETLQGRSRVRRTMWSRRAQEYEAKINSGDPVSIAEVVRDLYRGADQ 121
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++SYSERQ+Y++AL R+ RE+AAV I E +A +E LS +
Sbjct: 122 SDQSYSERQIYQAALERLARELAAVEKIDETKATERLESVLSKAA 166
>gi|302530715|ref|ZP_07283057.1| transcription regulator CarD [Streptomyces sp. AA4]
gi|302439610|gb|EFL11426.1| transcription regulator CarD [Streptomyces sp. AA4]
Length = 163
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 81/159 (50%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDKVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A +V E+A E +A L++ L +
Sbjct: 123 GEKRMLAKARQILVSELALAEGTDEGKAETLLDEVLETA 161
>gi|13473303|ref|NP_104870.1| transcriptional factor regulator [Mesorhizobium loti MAFF303099]
gi|260461457|ref|ZP_05809704.1| transcriptional regulator, CarD family [Mesorhizobium opportunistum
WSM2075]
gi|14024051|dbj|BAB50656.1| transcriptional factor regulator [Mesorhizobium loti MAFF303099]
gi|259032527|gb|EEW33791.1| transcriptional regulator, CarD family [Mesorhizobium opportunistum
WSM2075]
Length = 193
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 128/179 (71%), Positives = 148/179 (82%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+T Q+K R GF+TGE+IVYPAHGVG I I EQEVAG KLE FVI F KDKM LKVP
Sbjct: 4 ITPQKKSTGARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFQKDKMRLKVP 63
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVVR
Sbjct: 64 VAKATSIGMRKLSEEDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVR 123
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
DL+R D+QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ + K+
Sbjct: 124 DLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPKRGAKA 182
>gi|269124964|ref|YP_003298334.1| CarD family transcriptional regulator [Thermomonospora curvata DSM
43183]
gi|268309922|gb|ACY96296.1| transcriptional regulator, CarD family [Thermomonospora curvata DSM
43183]
Length = 160
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 83/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F G+ +VYP HG I I+ + + G + V+ DK + ++VPV ++G+R +
Sbjct: 3 FTVGDTVVYPHHGAARIEAIETRTIKGEDKTYLVLKVDKGDLTVRVPVENVEEVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+E+ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 GQEGLEKVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ A +V E+A +E +A L++ L+
Sbjct: 123 GEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLA 159
>gi|114764920|ref|ZP_01444093.1| transcriptional regulator, CarD family protein [Pelagibaca
bermudensis HTCC2601]
gi|114542632|gb|EAU45656.1| transcriptional regulator, CarD family protein [Roseovarius sp.
HTCC2601]
Length = 169
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 103/169 (60%), Positives = 125/169 (73%), Gaps = 5/169 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR +++VYPAHGVG I I+EQEVAGM LE FVI+F+KDKM L+VP
Sbjct: 1 MTKSKKN-----EFRPNDYVVYPAHGVGQIMSIEEQEVAGMTLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS V +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 THKATEIGMRSLSSPDVVSQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
DLHR D Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L
Sbjct: 116 DLHRADDQREQSYSERQLYEAALERLTREVAAVSGGDEVAAARQVDEVL 164
>gi|50955384|ref|YP_062672.1| transcriptional regulator, CarD-like regulator [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50951866|gb|AAT89567.1| transcriptional regulator, CarD-like regulator [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 160
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 85/158 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG TITE+K++ + G + + + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAATITEVKKRTIKGEEKLYLKLNVTQGDLTIEVPADNVDLVGVRDVI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I ++EVVRDL R D S
Sbjct: 63 GREGLDRVFEVLRAPFTEEPTNWSRRYKANLEKLASGDVIKVSEVVRDLWRRDQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A ++ E+A + +A +L++ L+S
Sbjct: 123 GEKRMLAKARQILISELALAEKTDDEKASSLLDEVLAS 160
>gi|84498455|ref|ZP_00997225.1| transcriptional regulator, CarD-like regulator [Janibacter sp.
HTCC2649]
gi|84381198|gb|EAP97082.1| transcriptional regulator, CarD-like regulator [Janibacter sp.
HTCC2649]
Length = 160
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 84/158 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I EI ++ + G++ + + + + ++VP +G+R +
Sbjct: 3 FKVGETVVYPHHGAARIEEINKRTIKGVERLYLKLKVAQGDLVIEVPAENCDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +E+ +++R + T WSRR + K+ SGD+I +AEVVRDL R D S
Sbjct: 63 DKAGLEKVFEVLRAPFAEEPTNWSRRFKANLEKLASGDVIKVAEVVRDLWRRDKDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E +A +++ L+S
Sbjct: 123 GEKRMLSKARQILVSELALAEKTDEEKAETILDEVLAS 160
>gi|116254341|ref|YP_770179.1| CarD family transcriptional regulator [Rhizobium leguminosarum bv.
viciae 3841]
gi|209551385|ref|YP_002283302.1| CarD family transcriptional regulator [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|241206827|ref|YP_002977923.1| CarD family transcriptional regulator [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|115258989|emb|CAK10098.1| putative CarD family transcriptional regulator [Rhizobium
leguminosarum bv. viciae 3841]
gi|209537141|gb|ACI57076.1| transcriptional regulator, CarD family [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|240860717|gb|ACS58384.1| transcriptional regulator, CarD family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 190
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 133/189 (70%), Positives = 155/189 (82%), Gaps = 1/189 (0%)
Query: 1 MTFQQKR-DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT QQK+ R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV
Sbjct: 1 MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV
Sbjct: 61 PVAKAMSIGMRKLSETDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ + +
Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLNKGPKRGKAI 180
Query: 180 TSENQDKAA 188
++ A
Sbjct: 181 EEDDSQDEA 189
>gi|302384121|ref|YP_003819944.1| CarD family transcriptional regulator [Brevundimonas subvibrioides
ATCC 15264]
gi|302194749|gb|ADL02321.1| transcriptional regulator, CarD family [Brevundimonas subvibrioides
ATCC 15264]
Length = 186
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 101/188 (53%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT + F+ G+ +VYPAHGVG + ++ QEVAGM LE +V+ FD +KM L+VP
Sbjct: 1 MTTK-----SVLEFKVGDAVVYPAHGVGKVAAVEVQEVAGMSLEVYVVTFDHEKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA G+R L+ V +AL ++G+AR+KRTMWSRRAQEY+AKINSGDL+ IAEVVR
Sbjct: 56 TKKAKTAGLRSLASEDVVTKALSTLKGRARIKRTMWSRRAQEYEAKINSGDLVCIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DLHR DSQPE+SYSERQLYESAL+RM RE+AA N I + A+ L+ +LS+K + +
Sbjct: 116 DLHRADSQPEQSYSERQLYESALDRMAREVAAANRIDKDAAVQLLSKSLSAKKANAPVAE 175
Query: 181 SENQDKAA 188
++D A
Sbjct: 176 VADEDSEA 183
>gi|197104173|ref|YP_002129550.1| transcriptional regulator,CarD family [Phenylobacterium zucineum
HLK1]
gi|196477593|gb|ACG77121.1| transcriptional regulator,CarD family [Phenylobacterium zucineum
HLK1]
Length = 171
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 97/163 (59%), Positives = 125/163 (76%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F G+H+VYPAHGVG + I+ QEVAG+KLE +VI FD +KM L+VP KA G+R
Sbjct: 6 HDFSVGDHVVYPAHGVGQVQGIETQEVAGLKLEVYVITFDHEKMTLRVPTAKAKTAGLRP 65
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
L++ V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR ++QPE+
Sbjct: 66 LADTGLVSKALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQ 125
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYSERQLYESAL+RM RE+AA+ I AI ++ +L ++
Sbjct: 126 SYSERQLYESALDRMAREVAAIERIDREAAIAMLNKSLVKATA 168
>gi|254476379|ref|ZP_05089765.1| transcriptional regulator, CarD family [Ruegeria sp. R11]
gi|214030622|gb|EEB71457.1| transcriptional regulator, CarD family [Ruegeria sp. R11]
Length = 169
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 102/174 (58%), Positives = 129/174 (74%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR +++VYPAHGVG I I+EQEVAG KLE FVI F+KDKM L+VP
Sbjct: 1 MTKSKK-----PEFRPDDYVVYPAHGVGQIISIEEQEVAGFKLELFVITFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS + +A+ ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 56 THKATEIGMRSLSSPDVIAKAMTTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDEISAAKQVDEVLTSRAA 169
>gi|262200966|ref|YP_003272174.1| transcription factor CarD [Gordonia bronchialis DSM 43247]
gi|262084313|gb|ACY20281.1| transcription factor CarD [Gordonia bronchialis DSM 43247]
Length = 162
Score = 141 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 87/160 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG + +I + + G ++E+ V+ M +++P K +G+R +
Sbjct: 3 FKVGDTVVYPHHGAARVEDIVTRTIKGEQIEYLVLKVADGDMTVQIPSTKLEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T W+RR + K+ SGD+I +AE+VRDL R + S
Sbjct: 63 GQEGLDQVFQVLRAPHTEEPTNWARRFKANQEKLISGDIIKVAEIVRDLWRREQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E++ + + +A ++++ L++ S
Sbjct: 123 GEKRMLTRARRVLVDELSLAQNTDDEKATSILDEVLAAAS 162
>gi|148556439|ref|YP_001264021.1| CarD family transcriptional regulator [Sphingomonas wittichii RW1]
gi|148501629|gb|ABQ69883.1| transcriptional regulator, CarD family [Sphingomonas wittichii RW1]
Length = 172
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 88/171 (51%), Positives = 124/171 (72%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
A F G+++VYP HGVG + E++ QE+AG KLE +V+ F+K++M L+VP KA +
Sbjct: 2 AAKALSFVVGDYVVYPKHGVGRVVELQSQEIAGAKLELYVLRFEKERMTLRVPTNKAEAV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS + + AL ++GK ++KRTMWSRRAQEY+AKINSGDL++I+EVVRDL R D
Sbjct: 62 GMRKLSSSVTMGEALTTLKGKPKIKRTMWSRRAQEYEAKINSGDLVSISEVVRDLFRADD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
QPE+SYSERQ++E+A +R+ RE+AA+ ++ EP A I L ++ K
Sbjct: 122 QPEQSYSERQIFEAATSRLARELAAMEAVDEPTAQEKILDILRKAAAIHNK 172
>gi|296284819|ref|ZP_06862817.1| transcriptional regulator [Citromicrobium bathyomarinum JL354]
Length = 182
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 89/175 (50%), Positives = 127/175 (72%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
A F G+++VYP HGVG + E++ +E+AGM+LE +V+ F+K++M L+VPV K I
Sbjct: 7 AAKALAFDVGDYVVYPKHGVGRVVELQSEEIAGMQLELYVLRFEKERMTLRVPVNKVEAI 66
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS ++ A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D
Sbjct: 67 GMRKLSSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRPDD 126
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182
QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L + + ++T E
Sbjct: 127 QPEQSYSERQIFEAASSRLARELAAMEKTDEPAALEKILSVLREHAPQYYENTEE 181
>gi|294084639|ref|YP_003551397.1| transcriptional regulator [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664212|gb|ADE39313.1| Transcriptional regulator [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 168
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 79/160 (49%), Positives = 116/160 (72%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F G+ +VYP HGVG I + +EVAG++LE V+ F++D+M L+VP+ KA +G+R LS
Sbjct: 9 FEEGDFVVYPTHGVGRILGTETREVAGIELEMLVVRFEQDRMTLRVPMEKAKTLGLRTLS 68
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +++A+ ++GKARV+RTMWSRRA EY+ KI SGD ++IAEVVRDLHR +Q E+SY
Sbjct: 69 SSKQMDQAITTLQGKARVRRTMWSRRAAEYETKIKSGDPVSIAEVVRDLHRRTNQSEQSY 128
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
SERQ+Y++AL R+ RE AA+ I + A +E ++ +
Sbjct: 129 SERQMYQAALERLAREYAAIEKIDQDAAALKLEDMMAEAA 168
>gi|99080417|ref|YP_612571.1| CarD family transcriptional regulator [Ruegeria sp. TM1040]
gi|99036697|gb|ABF63309.1| transcriptional regulator, CarD family [Ruegeria sp. TM1040]
Length = 169
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 106/174 (60%), Positives = 130/174 (74%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR + IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM L+VP
Sbjct: 1 MTKSKK-----LEFRPNDFIVYPAHGVGQIISIEEQEVAGYKLELFVITFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KAIDIGMR LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLI+IAEVVR
Sbjct: 56 THKAIDIGMRSLSSPDVINQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLISIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L+S+++
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDEIAAAKQVDEVLTSRAA 169
>gi|115522154|ref|YP_779065.1| CarD family transcriptional regulator [Rhodopseudomonas palustris
BisA53]
gi|115516101|gb|ABJ04085.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris
BisA53]
Length = 358
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 109/176 (61%), Positives = 138/176 (78%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
++K RQGF+T E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 161 EKKPLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAK 220
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
++GMRKLSE V+RAL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL
Sbjct: 221 VTNVGMRKLSEPALVKRALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLF 280
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
R+DSQPE+SYSERQLYE+AL+R+ REIA V ++E EA+ +E L+ + K+
Sbjct: 281 RSDSQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAVKEVEGQLAKSPRRGAKT 336
>gi|46201683|ref|ZP_00208209.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD
[Magnetospirillum magnetotacticum MS-1]
Length = 164
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 87/160 (54%), Positives = 118/160 (73%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+++VYP HGVG + ++ QE+ GMKL+ FVI FD+D+M L+VPV KA G+RKL
Sbjct: 5 SFTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQKSGLRKL 64
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S ++ AL ++G+A+VKRTMWSRRAQEY+AKINSGD ++IAEVVRDLHR +QP++S
Sbjct: 65 SSRSVMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNANQPDQS 124
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
YSERQ+YE+AL R+ E+AAV I A ++ L +
Sbjct: 125 YSERQIYEAALERLASELAAVERIDTQAATEKLQGLLEAA 164
>gi|209883217|ref|YP_002287074.1| transcriptional regulator of CarD family [Oligotropha
carboxidovorans OM5]
gi|209871413|gb|ACI91209.1| transcriptional regulator of CarD family [Oligotropha
carboxidovorans OM5]
Length = 323
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 108/171 (63%), Positives = 138/171 (80%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGF+T E +VYPAHGVG I I+EQE+AG +LE FVI+F KDKM L+VP K
Sbjct: 119 KKPLTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGARLELFVISFIKDKMTLRVPTAKV 178
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I++GMRKLS+ V+RAL ++G+AR+KRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R
Sbjct: 179 INVGMRKLSDPALVKRALDTLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 238
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
++SQPE+SYSERQLYE+AL+R+ REIA V I+E EAI +E NL+ +
Sbjct: 239 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAIKEVEANLAKSPRR 289
>gi|296392879|ref|YP_003657763.1| CarD family transcriptional regulator [Segniliparus rotundus DSM
44985]
gi|296180026|gb|ADG96932.1| transcriptional regulator, CarD family [Segniliparus rotundus DSM
44985]
Length = 162
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 83/160 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG + I+ + + G++ E+ V+ + ++VP A IG+R +
Sbjct: 3 FKIGDTVVYPHHGAALVEAIEVRTIKGVEKEYLVLKVGHGDLTVRVPAENAEYIGIRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 SDEGLDKVFNVLRDVHTEEPTNWSRRYKANIEKLASGDVHKVAEVVRDLWRREQGRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E++L A +V E+A S + +A L++ L+ S
Sbjct: 123 GEKRLLAKARQVLVGELALAESSDDAKAEGLLDEVLAQAS 162
>gi|83313417|ref|YP_423681.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82948258|dbj|BAE53122.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1]
Length = 167
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 86/160 (53%), Positives = 117/160 (73%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+++VYP HGVG + ++ QE+ GMKL+ FVI FD+D+M L+VPV KA G+R L
Sbjct: 8 SFTQGDYVVYPTHGVGQVVAVETQEIGGMKLQLFVITFDRDRMTLRVPVTKAQKSGLRML 67
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S ++ AL ++G+A+VKRTMWSRRAQEY+AKINSGD ++IAEVVRDLHR +QP++S
Sbjct: 68 SSRSVMDTALSTLKGRAKVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNANQPDQS 127
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
YSERQ+YE+AL R+ E+AAV I A ++ L +
Sbjct: 128 YSERQIYEAALERLASELAAVERIDTQAATEKLQGLLEAA 167
>gi|169627671|ref|YP_001701320.1| putative CarD-like transcriptional regulator [Mycobacterium
abscessus ATCC 19977]
gi|169239638|emb|CAM60666.1| Putative CarD-like transcriptional regulator [Mycobacterium
abscessus]
Length = 162
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 85/160 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG I I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++ +++R + T WSRR + K+ SGD+ +AEVVRDL R + + S
Sbjct: 63 GREGLDTVFQVLRAPHTEEPTNWSRRFKANQEKLASGDVKKVAEVVRDLWRREQERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E+A + + +A +++ L++ S
Sbjct: 123 GEKRMLAKARQILVGELALAENTNAAKADTILDEVLAAAS 162
>gi|170742914|ref|YP_001771569.1| CarD family transcriptional regulator [Methylobacterium sp. 4-46]
gi|168197188|gb|ACA19135.1| transcriptional regulator, CarD family [Methylobacterium sp. 4-46]
Length = 197
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 114/177 (64%), Positives = 147/177 (83%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K A RQGF+TGE IVYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP
Sbjct: 1 MTTAKKTTAARQGFKTGEAIVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +GMRKL+E V++AL ++ G+ARVKRTMWSRRAQEY+AKINSGDLIA+ EVVR
Sbjct: 61 TAKANAVGMRKLAEPDLVKKALDVLTGRARVKRTMWSRRAQEYEAKINSGDLIAVTEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
DL+R+++QPE+SYSERQLYE+AL+R+VREIAAVN I++ E++ LIE +L+ + +
Sbjct: 121 DLYRSEAQPEQSYSERQLYEAALDRVVREIAAVNKITDTESLKLIEQSLAKSPRRAK 177
>gi|89069370|ref|ZP_01156729.1| transcriptional regulator, CarD family protein [Oceanicola
granulosus HTCC2516]
gi|89045137|gb|EAR51208.1| transcriptional regulator, CarD family protein [Oceanicola
granulosus HTCC2516]
Length = 171
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 101/174 (58%), Positives = 126/174 (72%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ +K F +H+VYPAHGVG I I++QEVAG +LE FVI+F+KDKM L+VP
Sbjct: 1 MSKSRKN-----EFSPNDHVVYPAHGVGQIVSIEKQEVAGFELELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA ++GMR LS V A+K ++GKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 THKAEEVGMRSLSSPDVVAHAMKTLKGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHR D Q E+SYSERQLYE+AL R+ REIAAV E A I+ L S+++
Sbjct: 116 DLHRADDQREQSYSERQLYEAALERLTREIAAVGGNDEVAAAKEIDDVLVSRAA 169
>gi|222087730|ref|YP_002546267.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
gi|221725178|gb|ACM28334.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
Length = 190
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 133/189 (70%), Positives = 156/189 (82%), Gaps = 1/189 (0%)
Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT QQK+ + R GF+TGE IVYPAHGVGTIT I+EQEVAGMKLE FVI F+KDKM LKV
Sbjct: 1 MTTQQKKPSAARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA+ IGMRKLSE FVERALK+V+GKARVKRTMWSRRAQEYDAKINSGDLI+IAEVV
Sbjct: 61 PVAKAMSIGMRKLSETDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ L+E NL+ + +
Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLNKGPKRGKVV 180
Query: 180 TSENQDKAA 188
++ A
Sbjct: 181 EEDDSQDEA 189
>gi|258651110|ref|YP_003200266.1| CarD family transcriptional regulator [Nakamurella multipartita DSM
44233]
gi|258554335|gb|ACV77277.1| transcriptional regulator, CarD family [Nakamurella multipartita
DSM 44233]
Length = 160
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 82/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I + + V G++ + V+ + + +KVP A +G+R +
Sbjct: 3 FNVGETVVYPHHGAALIQATETRTVKGVEKLYLVLKVAQGDLTVKVPADNAEIVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ +++R + T WSRR + K+ SGD+ +AEVVRDL R D + S
Sbjct: 63 DRTGLDHVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E A +++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAEGTNEVRAEGILDEVLAS 160
>gi|296537276|ref|ZP_06899162.1| CarD family transcriptional regulator [Roseomonas cervicalis ATCC
49957]
gi|296262394|gb|EFH09133.1| CarD family transcriptional regulator [Roseomonas cervicalis ATCC
49957]
Length = 226
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 114/164 (69%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
F+ G+H+VYP HGVG + I+ VAG +L+ ++ F++++M L+VP+ KA G
Sbjct: 63 NQGSEFKAGDHVVYPTHGVGQVQGIESMAVAGTELKVIIVTFEENRMTLRVPLNKAASSG 122
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+RKL+ + A++ ++G+AR+KRTMWSRRAQEY+ KINSGD + IAEVVRDLHR Q
Sbjct: 123 LRKLAGGDRMGEAMETLKGRARIKRTMWSRRAQEYEQKINSGDPVQIAEVVRDLHRNAGQ 182
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
P++S+SERQ+YE A++R+ E+AA++ + A+ + +L
Sbjct: 183 PDQSFSERQIYELAMDRLAAEVAAIDGTDKNGAMTKLLEHLKQG 226
>gi|260576851|ref|ZP_05844834.1| transcriptional regulator, CarD family [Rhodobacter sp. SW2]
gi|259020888|gb|EEW24201.1| transcriptional regulator, CarD family [Rhodobacter sp. SW2]
Length = 169
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 102/174 (58%), Positives = 129/174 (74%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR E +VYPAHGVG I I+EQE+AG+ LE FVI+F+KDKM L+VP
Sbjct: 1 MTKSKK-----PEFRPNEFVVYPAHGVGKIISIEEQEIAGLHLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS V +AL ++GKARVKR MWSRRAQEY+ KINSGDL++IAEVVR
Sbjct: 56 THKATEIGMRGLSSPDIVTKALDTLKGKARVKRAMWSRRAQEYEQKINSGDLLSIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHR+D Q E+SYSERQLYE+AL R+ RE+AAV+ + E A + L+S+++
Sbjct: 116 DLHRSDDQREQSYSERQLYEAALERLTREVAAVSGVDEAGAQKTVGTVLTSRAA 169
>gi|317507825|ref|ZP_07965526.1| CarD/TRCF domain-containing protein [Segniliparus rugosus ATCC
BAA-974]
gi|316253867|gb|EFV13236.1| CarD/TRCF domain-containing protein [Segniliparus rugosus ATCC
BAA-974]
Length = 162
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 84/160 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG + I+ + + G++ E+ V+ + + ++VP A IG+R +
Sbjct: 3 FKIGDTVVYPHHGAALVEAIEVRTIKGVEKEYLVLKVGQGDLTVRVPAENAEYIGIRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ ++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 SDEGLDKVFNVLRDVHTEEPTNWSRRYKANIEKLASGDVHKVAEVVRDLWRREQGRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E++L A +V E+A S + +A L++ L+ S
Sbjct: 123 GEKRLLAKARQVLVGELALAESSDDEKAECLLDEVLAEAS 162
>gi|254449905|ref|ZP_05063342.1| transcriptional regulator, CarD family [Octadecabacter antarcticus
238]
gi|198264311|gb|EDY88581.1| transcriptional regulator, CarD family [Octadecabacter antarcticus
238]
Length = 170
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 96/167 (57%), Positives = 120/167 (71%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ + + +VYPAHGVG I I+ QE+AG +LE FVIAF+KDKM L+VP KA D+
Sbjct: 2 AKKKYDYSPNDFVVYPAHGVGKIVSIETQEIAGFELEMFVIAFEKDKMTLRVPTNKAEDV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMR L+ V +K ++GKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D
Sbjct: 62 GMRSLASTEVVADCMKTLKGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Q E+SYSERQLYE+AL R+ RE AAV + +E EA I L S++
Sbjct: 122 QREQSYSERQLYEAALERLTREFAAVGNGNELEAGTEITDTLQSRAP 168
>gi|254418588|ref|ZP_05032312.1| CarD-like transcriptional regulator family [Brevundimonas sp. BAL3]
gi|196184765|gb|EDX79741.1| CarD-like transcriptional regulator family [Brevundimonas sp. BAL3]
Length = 176
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 97/169 (57%), Positives = 126/169 (74%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYPAHGVG + ++ QEVAGM LE +V+ FD +KM L+VP KA G+R L
Sbjct: 8 EFKVGDAVVYPAHGVGKVAAVETQEVAGMSLEVYVVTFDHEKMTLRVPTKKAATAGLRSL 67
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ V +AL ++G+AR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR D+QPE+S
Sbjct: 68 AADDVVTKALTTLKGRARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRADTQPEQS 127
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181
YSERQLYESAL+RM RE+AA N I + A+ L+ +LS+K +
Sbjct: 128 YSERQLYESALDRMAREVAAANKIDKDAAVELLAKSLSAKKPIPTAEAA 176
>gi|317123120|ref|YP_004103123.1| CarD family transcriptional regulator [Thermaerobacter marianensis
DSM 12885]
gi|315593100|gb|ADU52396.1| transcriptional regulator, CarD family [Thermaerobacter marianensis
DSM 12885]
Length = 190
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 76/158 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I I+E+EV G + ++V+ M + +P A G+R +
Sbjct: 1 MFEVGDRVVYPMHGAGVIEAIEEREVLGKRHRYYVLRLPVGDMRVMIPTTTASRCGLRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
A V L + A W+ R +E+ K+ +GD++ +A VVR+L + S
Sbjct: 61 IPAEQVPAVLDALGDPAPPMDPNWNHRYREHADKLRTGDVLEVAAVVRNLSARQRERGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER+L + A +V E+ + + + L++ L
Sbjct: 121 GGERRLLDQARQILVSELTLASGLDQAAVDALVDRCLE 158
>gi|17986562|ref|NP_539196.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
gi|17982170|gb|AAL51460.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
Length = 207
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 129/188 (68%), Positives = 153/188 (81%), Gaps = 2/188 (1%)
Query: 1 MTFQQKRDAMRQG-FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
M+ QQK+ + +G F+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV
Sbjct: 17 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 76
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV
Sbjct: 77 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 136
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K+
Sbjct: 137 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLAKG-PKRGKA 195
Query: 180 TSENQDKA 187
+E D
Sbjct: 196 EAELDDDE 203
>gi|163853280|ref|YP_001641323.1| transcription factor CarD [Methylobacterium extorquens PA1]
gi|163664885|gb|ABY32252.1| transcription factor CarD [Methylobacterium extorquens PA1]
Length = 196
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 114/196 (58%), Positives = 151/196 (77%), Gaps = 8/196 (4%)
Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT +K RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+V
Sbjct: 1 MTTAKKTTVAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P KA +GMRKL+E V++AL ++ G+ARVKRTMWSRRAQEY+AKINSGDLI++ EVV
Sbjct: 61 PTAKANSVGMRKLAEPELVKKALDVLTGRARVKRTMWSRRAQEYEAKINSGDLISVTEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ + +
Sbjct: 121 RDLFRSEAQPEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLAKSPRRAKAD 180
Query: 180 -------TSENQDKAA 188
+ Q++AA
Sbjct: 181 AEADAEGEDDVQEEAA 196
>gi|309812604|ref|ZP_07706349.1| CarD-like protein [Dermacoccus sp. Ellin185]
gi|308433455|gb|EFP57342.1| CarD-like protein [Dermacoccus sp. Ellin185]
Length = 160
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 87/159 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE +VYP HG TI EIK +++ G ++ V+ + + ++VP +G+R +
Sbjct: 2 EFKVGETVVYPHHGAATIEEIKVRKIKGEDKQYLVLNVAQGDLTIEVPAENCDLVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +E+ +++R + + T WSRR + K+ SGD+I +AEVVRDL R D S
Sbjct: 62 VDKAGLEKVFEVLRAEHTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A ++ L+S
Sbjct: 122 AGEKRMLAKARQILVSELALAEHTNEDKAEATLDEVLAS 160
>gi|218532096|ref|YP_002422912.1| CarD family transcriptional regulator [Methylobacterium
chloromethanicum CM4]
gi|240140688|ref|YP_002965168.1| transcriptional regulator, CarD family [Methylobacterium extorquens
AM1]
gi|218524399|gb|ACK84984.1| transcriptional regulator, CarD family [Methylobacterium
chloromethanicum CM4]
gi|240010665|gb|ACS41891.1| transcriptional regulator, CarD family [Methylobacterium extorquens
AM1]
Length = 196
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 113/196 (57%), Positives = 151/196 (77%), Gaps = 8/196 (4%)
Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT +K RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+V
Sbjct: 1 MTTAKKTTVAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI++ EVV
Sbjct: 61 PTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLISVTEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ + +
Sbjct: 121 RDLFRSEAQPEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLAKSPRRAKAD 180
Query: 180 -------TSENQDKAA 188
+ Q++AA
Sbjct: 181 AEADAEGEDDVQEEAA 196
>gi|294678311|ref|YP_003578926.1| CarD family transcriptional regulator [Rhodobacter capsulatus SB
1003]
gi|294477131|gb|ADE86519.1| transcriptional regulator, CarD family [Rhodobacter capsulatus SB
1003]
Length = 169
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 100/169 (59%), Positives = 126/169 (74%), Gaps = 5/169 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR + +VYPAHGVG I I+EQE+AG++LE FVI+F+KDKM L+VP
Sbjct: 1 MTKMKK-----TEFRPDDFVVYPAHGVGKIISIEEQEIAGLRLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA+DIGMR LS V +AL+ ++GKA+VKR MWSRRAQEY+ KINSGDL++IAEVVR
Sbjct: 56 THKAVDIGMRGLSSPDVVTKALETLKGKAKVKRAMWSRRAQEYEQKINSGDLLSIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
DLHR D Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L
Sbjct: 116 DLHRADDQREQSYSERQLYEAALERLTREVAAVSGTDEAGAAKKVDEVL 164
>gi|163736061|ref|ZP_02143484.1| transcriptional regulator, CarD family, putative [Roseobacter
litoralis Och 149]
gi|161390657|gb|EDQ15003.1| transcriptional regulator, CarD family, putative [Roseobacter
litoralis Och 149]
Length = 170
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 103/172 (59%), Positives = 125/172 (72%), Gaps = 5/172 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR E +VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP
Sbjct: 1 MTKSKK-----LDFRPNEFVVYPAHGVGQILSIEEQEVAGISLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS + A++ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 THKATEIGMRALSSPDVISHAMRTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A + L S+
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDELAASKQVGDVLESR 167
>gi|311741767|ref|ZP_07715578.1| CarD family transcriptional regulator [Aeromicrobium marinum DSM
15272]
gi|311314773|gb|EFQ84679.1| CarD family transcriptional regulator [Aeromicrobium marinum DSM
15272]
Length = 161
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFV-IAFDKDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I +I+ +++ G + ++ V ++ + ++VP +G+R +
Sbjct: 3 FTVGETVVYPNHGAAVIEDIETRKIKGEERDYLVLRIIAQNDLVVRVPACNLDLVGVRDV 62
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+A +ER ++R + + T WSRR + K++SGD++ +AEVVRDL R D + S
Sbjct: 63 VDADGLERVFSVLRAEHVEEPTNWSRRYKANLEKLHSGDVLKVAEVVRDLWRRDHERGLS 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + +E +A ++ L+S
Sbjct: 123 AGEKRMLAKARQILVSELALAENTNEDKAELRLDEVLAS 161
>gi|51894260|ref|YP_076951.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863]
gi|51857949|dbj|BAD42107.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863]
Length = 159
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 84/159 (52%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG G I I+++EV G + ++V+ M + VP G+R +
Sbjct: 1 MFQVGDKVVYPMHGAGIIEAIEDREVLGERKRYYVLRLPVADMQVLVPCDGPQSTGLRAV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ L+++R + W+ R + KI SGD++A+AEVVR L + + + S
Sbjct: 61 MSEQVFQQVLEVLRSRPTQAEKNWNHRYRMNMEKIRSGDVLALAEVVRTLSQREREKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
ER++ +SA ++ EI + + +A +L++ L+
Sbjct: 121 TGERKMLDSARQILLSEIVLIRGLELEQASSLLDRVLAQ 159
>gi|88855757|ref|ZP_01130420.1| transcriptional regulator, CarD-like regulator [marine
actinobacterium PHSC20C1]
gi|88815081|gb|EAR24940.1| transcriptional regulator, CarD-like regulator [marine
actinobacterium PHSC20C1]
Length = 160
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 84/158 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG TITE+K++ + G + + + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAATITEVKKRTIKGEEKIYLKLNVTQGDLTIEVPAENVDLVGVRDVI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + K+ SGD+I ++EVVRDL R D S
Sbjct: 63 GREGLDQVFEVLRAPFTEEPTNWSRRYKANLEKLASGDVIKVSEVVRDLWRRDQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A ++ E+A E +A +++ L+S
Sbjct: 123 GEKRMLAKARQILISELALAEKTDEEKASLVLDEVLAS 160
>gi|126733165|ref|ZP_01748912.1| transcriptional regulator, CarD family, putative [Roseobacter sp.
CCS2]
gi|126716031|gb|EBA12895.1| transcriptional regulator, CarD family, putative [Roseobacter sp.
CCS2]
Length = 168
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 99/167 (59%), Positives = 120/167 (71%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ F E +VYPAHGVG I I+ QEVAG +LE FVI+F+KDKM L+VP KA +
Sbjct: 2 SKKKYDFSPNEFVVYPAHGVGKIVSIETQEVAGFELEMFVISFEKDKMTLRVPTDKATHV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMR L+ V A+K +RGKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D
Sbjct: 62 GMRALATPDVVSHAMKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRQDD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Q E+SYSERQLYE+AL R+ REIAAV E A I+ L S+++
Sbjct: 122 QREQSYSERQLYEAALERLTREIAAVAGNDENAAAAEIDSVLVSRAA 168
>gi|94497220|ref|ZP_01303792.1| transcriptional regulator, CarD family protein [Sphingomonas sp.
SKA58]
gi|94423325|gb|EAT08354.1| transcriptional regulator, CarD family protein [Sphingomonas sp.
SKA58]
Length = 175
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 88/173 (50%), Positives = 126/173 (72%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
A F G+++VYP HGVG + E++++++AGM+LE +V+ F+K++M L+VP KA +
Sbjct: 2 AAKALSFDVGDYVVYPKHGVGRVIELQKEQIAGMELELYVLRFEKERMTLRVPTNKAEGV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS +E A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D
Sbjct: 62 GMRKLSSNKTLEEAMETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L+ + K K
Sbjct: 122 QPEQSYSERQIFEAASSRLARELAAMEETDEPSALQKILRILNEAAPKYAKVE 174
>gi|39933565|ref|NP_945841.1| CarD-like transcriptional regulator [Rhodopseudomonas palustris
CGA009]
gi|39647411|emb|CAE25932.1| possible CarD-like transcriptional regulator [Rhodopseudomonas
palustris CGA009]
Length = 220
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 105/171 (61%), Positives = 135/171 (78%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 22 KKAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 81
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R
Sbjct: 82 GNVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 141
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
++SQPE+SYSERQLYE+AL+R+ REIA V I+E EA+ +E L+ +
Sbjct: 142 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEVESQLAKSPRR 192
>gi|83859720|ref|ZP_00953240.1| hypothetical protein OA2633_06964 [Oceanicaulis alexandrii
HTCC2633]
gi|83852079|gb|EAP89933.1| hypothetical protein OA2633_06964 [Oceanicaulis alexandrii
HTCC2633]
Length = 172
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 91/170 (53%), Positives = 128/170 (75%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K + F+ +++VYPAHGVG + ++++ VAG +E +V++F++DKM L+VP KA
Sbjct: 3 KKSANDNKTFKKSDYVVYPAHGVGRVVGVEKESVAGFDIEVYVVSFEQDKMTLRVPTAKA 62
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
GMR L+ ++ ALK ++GK +VKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR
Sbjct: 63 TAAGMRPLASDDVLKDALKTLKGKPKVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHR 122
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ QPE SYSERQLYESAL+RMVRE+AAV + +A+ ++ L+ K++
Sbjct: 123 QEDQPEPSYSERQLYESALDRMVREVAAVEKVDREKALEMLTTTLTKKAA 172
>gi|312113407|ref|YP_004011003.1| transcriptional regulator, CarD family [Rhodomicrobium vannielii
ATCC 17100]
gi|311218536|gb|ADP69904.1| transcriptional regulator, CarD family [Rhodomicrobium vannielii
ATCC 17100]
Length = 187
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 105/176 (59%), Positives = 131/176 (74%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
GF+ E++VYP HGVG I I+EQE+AG KLE FVI F+KDKM L+VP K GMRKL
Sbjct: 11 GFKANEYVVYPTHGVGRIVAIEEQEIAGCKLELFVINFEKDKMTLRVPTSKTQSAGMRKL 70
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S+A + RA++ +RG+ARVKRTMWSRRAQEY+AKINSGDLI IAEVVRDL+R+D+QPE+S
Sbjct: 71 SDAAVLARAMETLRGRARVKRTMWSRRAQEYEAKINSGDLITIAEVVRDLYRSDAQPEQS 130
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188
YSERQLYESAL+RM REIAA + E AI + L+ ++ + + K A
Sbjct: 131 YSERQLYESALDRMAREIAAAQDVDESIAIQKVAEALTKAGRLRKQEVEDEEKKEA 186
>gi|316931531|ref|YP_004106513.1| CarD family transcriptional regulator [Rhodopseudomonas palustris
DX-1]
gi|315599245|gb|ADU41780.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris
DX-1]
Length = 264
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 105/171 (61%), Positives = 135/171 (78%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 64 KKAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 123
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R
Sbjct: 124 GNVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 183
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
++SQPE+SYSERQLYE+AL+R+ REIA V I+E EA+ +E L+ +
Sbjct: 184 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEVESQLAKSPRR 234
>gi|257068115|ref|YP_003154370.1| transcriptional regulator, CarD family [Brachybacterium faecium DSM
4810]
gi|256558933|gb|ACU84780.1| transcriptional regulator, CarD family [Brachybacterium faecium DSM
4810]
Length = 160
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 78/158 (49%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I E+K + + G + + + + ++VP +G+R +
Sbjct: 3 FAVGETVVYPHHGAALIEEVKTRTIKGEDRTYLKLKVAQGDLTIEVPADNVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ ++R + T WSRR + K+ SGD+ +AEVVRDL R D S
Sbjct: 63 DKEGLDEVFDVLRQPYTEEPTNWSRRYKANVEKLASGDVKKVAEVVRDLWRRDQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E A ++++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAEKTDEGNAESILDEVLAS 160
>gi|296447999|ref|ZP_06889905.1| transcriptional regulator, CarD family [Methylosinus trichosporium
OB3b]
gi|296254509|gb|EFH01630.1| transcriptional regulator, CarD family [Methylosinus trichosporium
OB3b]
Length = 546
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 107/175 (61%), Positives = 133/175 (76%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
GF+T E IVYPAHGVG I I+ QEVAG LE FV+ F KDKM LKVPV K +GMRKL
Sbjct: 359 GFKTNEFIVYPAHGVGQIMAIETQEVAGFSLELFVVHFVKDKMTLKVPVSKVAAVGMRKL 418
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E VE+AL + G+ARVKRTMWSRRAQEY+AKINSGDL+ IAEVVRDL+R+D+QPE+S
Sbjct: 419 AEPDVVEKALGTLTGRARVKRTMWSRRAQEYEAKINSGDLVTIAEVVRDLYRSDTQPEQS 478
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187
YSERQLYE+AL+RM RE+AAV + + E++ LIE L+ + +KS + +
Sbjct: 479 YSERQLYEAALDRMAREVAAVRKLIDSESLKLIESFLAKSPRRGQKSEDASDEAT 533
>gi|220930938|ref|YP_002507846.1| transcriptional regulator, CarD family [Halothermothrix orenii H
168]
gi|219992248|gb|ACL68851.1| transcriptional regulator, CarD family [Halothermothrix orenii H
168]
Length = 176
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 85/168 (50%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ F+ G+ +VYP HG GTI I+ + + G + +++++ M + +PV K +IG+R
Sbjct: 9 NKMFKVGDKVVYPNHGAGTIVGIETKNILGEEKKYYIMKLPIGDMKVMIPVEKVEEIGVR 68
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ + + LKL++G W+RR + K+ +GD+ + EVVR+L D +
Sbjct: 69 NIIDEEEADNVLKLLKGDKSKMSQNWNRRYRANMEKLKTGDIYEVGEVVRNLTIRDHEKG 128
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
S E+++ +A ++ E+ + E E +I+ + E+
Sbjct: 129 LSTGEKKMLSNARQILISELVLAKDMDEKEVEEIIDNVFEENPNLDEE 176
>gi|126729325|ref|ZP_01745139.1| transcriptional regulator, CarD family protein [Sagittula stellata
E-37]
gi|126710315|gb|EBA09367.1| transcriptional regulator, CarD family protein [Sagittula stellata
E-37]
Length = 171
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 100/169 (59%), Positives = 124/169 (73%), Gaps = 6/169 (3%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR +++VYPAHGVG I I+EQE+AG+ LE FVI+F+KDKM L+VP
Sbjct: 4 MTKAKK-----AEFRPNDYVVYPAHGVGQIVSIEEQEIAGISLELFVISFEKDKMTLRVP 58
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA ++GMR LS V A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 59 THKASEVGMRSLSSPDVVSEAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 118
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
DLHR D Q E+SYSERQLYE+AL R+ RE+AAV + E A ++ L
Sbjct: 119 DLHRADDQREQSYSERQLYEAALERLTREVAAV-TGDEAAAAKQVDEVL 166
>gi|325962196|ref|YP_004240102.1| CarD family transcriptional regulator [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468283|gb|ADX71968.1| transcriptional regulator, CarD family [Arthrobacter
phenanthrenivorans Sphe3]
Length = 160
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 81/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK + + G + + + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+E ++R + + T WSRR + K+ SGD+I +AEVVRDL R D S
Sbjct: 63 GKDGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDHDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A ++ E+A E +A ++++ L+S
Sbjct: 123 GEKRMLAKARQILISELALAEKTDEEKAASVLDEVLAS 160
>gi|192288919|ref|YP_001989524.1| CarD family transcriptional regulator [Rhodopseudomonas palustris
TIE-1]
gi|192282668|gb|ACE99048.1| transcriptional regulator, CarD family [Rhodopseudomonas palustris
TIE-1]
Length = 278
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 105/171 (61%), Positives = 135/171 (78%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K RQGF+ E +VYPAHGVG I I+EQE+AG KLE FVI F KDKM L+VP K
Sbjct: 80 KKAVTQRQGFKANEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKV 139
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
++GMRKLS+ V++AL+ ++G+ARVKRTMWSRRAQEY+AKINSGD++AIAEVVRDL+R
Sbjct: 140 GNVGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYR 199
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
++SQPE+SYSERQLYE+AL+R+ REIA V I+E EA+ +E L+ +
Sbjct: 200 SESQPEQSYSERQLYEAALDRLSREIAVVQHITETEAVKEVESQLAKSPRR 250
>gi|110679120|ref|YP_682127.1| CarD family transcriptional regulator [Roseobacter denitrificans
OCh 114]
gi|109455236|gb|ABG31441.1| transcriptional regulator, CarD family, putative [Roseobacter
denitrificans OCh 114]
Length = 170
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 103/172 (59%), Positives = 125/172 (72%), Gaps = 5/172 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR E +VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP
Sbjct: 1 MTKSKK-----LDFRPNEFVVYPAHGVGQILSIEEQEVAGLSLELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS + A++ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 THKATEIGMRALSSPDVISHAMRTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A + L S+
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDELAASKQVGDVLESR 167
>gi|126727502|ref|ZP_01743336.1| putative CarD-like transcriptional regulator [Rhodobacterales
bacterium HTCC2150]
gi|126703282|gb|EBA02381.1| putative CarD-like transcriptional regulator [Rhodobacterales
bacterium HTCC2150]
Length = 172
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 100/174 (57%), Positives = 127/174 (72%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ ++ FR E +VYPAHGVG I I++QE+AG+++E FV+AF+KDKM L+VP
Sbjct: 1 MSKKK-----NYAFRPNEFVVYPAHGVGQIVRIEDQEIAGIEMELFVVAFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA+ +GMR LS V RA+ ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 TEKALHVGMRSLSSPETVTRAMTTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV E A I+ L S++
Sbjct: 116 DLHRTDEQREQSYSERQLYEAALERLTREVAAVGGTDEVVAGQQIDGVLMSRAP 169
>gi|16124906|ref|NP_419470.1| hypothetical protein CC_0653 [Caulobacter crescentus CB15]
gi|221233627|ref|YP_002516063.1| CarD-like transcriptional regulator [Caulobacter crescentus NA1000]
gi|13421868|gb|AAK22638.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962799|gb|ACL94155.1| CarD-like transcriptional regulator [Caulobacter crescentus NA1000]
Length = 185
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 99/171 (57%), Positives = 128/171 (74%), Gaps = 2/171 (1%)
Query: 5 QKRDAMRQ--GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++ + + F G+H+VYPAHGVG+I I+ QEVAGM LE +VI FD +KM L+VP
Sbjct: 15 KRTNMSKTGLEFSVGDHVVYPAHGVGSIQAIETQEVAGMSLEVYVITFDHEKMTLRVPTK 74
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
KA G+R L+E V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDL
Sbjct: 75 KAKTAGLRPLAEGGTVSQALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDL 134
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
HR ++QPE+SYSERQLYESAL+RM RE+AA+ I AI ++ +L +
Sbjct: 135 HRAENQPEQSYSERQLYESALDRMAREVAAIERIDREAAIGILTKSLVKAA 185
>gi|163746984|ref|ZP_02154341.1| transcriptional regulator, CarD family, putative [Oceanibulbus
indolifex HEL-45]
gi|161380098|gb|EDQ04510.1| transcriptional regulator, CarD family, putative [Oceanibulbus
indolifex HEL-45]
Length = 170
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 104/172 (60%), Positives = 125/172 (72%), Gaps = 5/172 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR E +VYPAHGVG I I+EQEVAG+ LE FVI+F+KDKM L+VP
Sbjct: 1 MTKSKK-----LDFRPNEFVVYPAHGVGQIVSIEEQEVAGIALELFVISFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 THKATEIGMRALSTPDVINHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV+ E A + L S+
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDELAAAKQVGDVLESR 167
>gi|332186920|ref|ZP_08388661.1| carD-like/TRCF domain protein [Sphingomonas sp. S17]
gi|332012930|gb|EGI54994.1| carD-like/TRCF domain protein [Sphingomonas sp. S17]
Length = 177
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 88/172 (51%), Positives = 125/172 (72%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
A F G+++VYP HGVG + E+++QE+AGM+LE +V+ F+K++M L+VP KA +
Sbjct: 2 AAKALHFDVGDYVVYPKHGVGRVIELQKQEIAGMQLELYVLRFEKERMTLRVPTNKAESV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS + A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEVVRDL R D
Sbjct: 62 GMRKLSSDKTMREAMETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVVRDLFRADD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
QPE+SYSERQ++E+A +R+ RE+AA+ + E A I L + ++ K
Sbjct: 122 QPEQSYSERQIFEAATSRLARELAAMEEVDEQRAQEKILEILRAAAAIYNKE 173
>gi|188583533|ref|YP_001926978.1| CarD family transcriptional regulator [Methylobacterium populi
BJ001]
gi|179347031|gb|ACB82443.1| transcriptional regulator, CarD family [Methylobacterium populi
BJ001]
Length = 198
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 111/178 (62%), Positives = 147/178 (82%), Gaps = 1/178 (0%)
Query: 1 MTFQQKRDAM-RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
MT +K A RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+V
Sbjct: 1 MTTAKKTTAAGRQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI++ EVV
Sbjct: 61 PTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLISVTEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
RDL+R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ + +
Sbjct: 121 RDLYRSEAQPEQSYSERQLYEAALDRVVREISSVNRITETEALKLIEQSLAKSPRRAK 178
>gi|116669291|ref|YP_830224.1| CarD family transcriptional regulator [Arthrobacter sp. FB24]
gi|119961222|ref|YP_946691.1| CarD-like transcriptional regulator [Arthrobacter aurescens TC1]
gi|220911627|ref|YP_002486936.1| CarD family transcripitonal regulator [Arthrobacter
chlorophenolicus A6]
gi|116609400|gb|ABK02124.1| transcriptional regulator, CarD family [Arthrobacter sp. FB24]
gi|119948081|gb|ABM06992.1| putative CarD-like transcriptional regulator [Arthrobacter
aurescens TC1]
gi|219858505|gb|ACL38847.1| transcriptional regulator, CarD family [Arthrobacter
chlorophenolicus A6]
Length = 160
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 81/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK + + G + + + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+E ++R + + T WSRR + K+ SGD+I +AEVVRDL R D S
Sbjct: 63 GKEGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDHDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A ++ E+A E +A ++++ L+S
Sbjct: 123 GEKRMLAKARQILISELALAEKTDEEKAASVLDEVLAS 160
>gi|332669115|ref|YP_004452123.1| CarD family transcriptional regulator [Cellulomonas fimi ATCC 484]
gi|332338153|gb|AEE44736.1| transcriptional regulator, CarD family [Cellulomonas fimi ATCC 484]
Length = 160
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 81/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK + + G + + + + ++VP +G+R +
Sbjct: 3 FTVGETVVYPHHGAALIEEIKTRTIRGEDKIYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D+ S
Sbjct: 63 GQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLSRRDADRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E +A +++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAEHTEEEKAEAILDEVLAS 160
>gi|269796457|ref|YP_003315912.1| CarD family transcriptional regulator [Sanguibacter keddieii DSM
10542]
gi|269098642|gb|ACZ23078.1| transcriptional regulator, CarD family [Sanguibacter keddieii DSM
10542]
Length = 160
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 81/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK + + G + + + + ++VP +G+R +
Sbjct: 3 FTVGETVVYPHHGAALIEEIKTRTIRGEDKLYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + KI SGD+I +AEVVRDL R D+ S
Sbjct: 63 GQEGLDRVFEVLRAPYTEEPTNWSRRYKANVEKIASGDVIKVAEVVRDLSRRDADRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E +A +++ L+S
Sbjct: 123 GEKRMLARARQILVSELALAEHTEEEKAEAILDEVLAS 160
>gi|294012721|ref|YP_003546181.1| CarD-family transcriptional regulator [Sphingobium japonicum UT26S]
gi|292676051|dbj|BAI97569.1| CarD-family transcriptional regulator [Sphingobium japonicum UT26S]
Length = 175
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 88/173 (50%), Positives = 126/173 (72%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
A F G+++VYP HGVG + E++++++AGM+LE +V+ F+K++M L+VP KA +
Sbjct: 2 AAKALSFDVGDYVVYPKHGVGRVIELQKEQIAGMELELYVLRFEKERMTLRVPTNKAEGV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS +E A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D
Sbjct: 62 GMRKLSSNKTLEEAVETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L+ + K K
Sbjct: 122 QPEQSYSERQIFEAASSRLARELAAMEETDEPSALKKILRILNEAAPKHAKVE 174
>gi|87198150|ref|YP_495407.1| CarD family transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87133831|gb|ABD24573.1| transcriptional regulator, CarD family [Novosphingobium
aromaticivorans DSM 12444]
Length = 174
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 88/171 (51%), Positives = 124/171 (72%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++VYP HGVG + E++++E+AGMKL+ +V+ F+K++M L+VPV K IGM
Sbjct: 4 KALAFDVGDYVVYPKHGVGRVVELQDEEIAGMKLQLYVLRFEKERMTLRVPVNKVEAIGM 63
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RKLS + AL ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D QP
Sbjct: 64 RKLSSDKTLREALDTLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQP 123
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
E+SYSERQ++E+A +R+ RE+AA+ EP A+ I L+ + K ++
Sbjct: 124 EQSYSERQIFEAASSRLARELAAMEKTDEPAALKKILAILNEHAPKYYETA 174
>gi|256833291|ref|YP_003162018.1| transcriptional regulator, CarD family [Jonesia denitrificans DSM
20603]
gi|256686822|gb|ACV09715.1| transcriptional regulator, CarD family [Jonesia denitrificans DSM
20603]
Length = 161
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 80/160 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I EIK + + G + + + + ++VP +G+R +
Sbjct: 2 SFTVGETVVYPHHGAALIEEIKTRTIRGEDKTYLKLRVAQGDLVIEVPAENIDLVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ S
Sbjct: 62 VGKEGLDEVFEVLRAPYTEEPTNWSRRYKANVEKIASGDVIKVAEVVRDLSRRDTDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A +V E+A E +A +++ L+S
Sbjct: 122 AGEKRMLSRARQILVSELALAERTEEDKAEAILDEVLASS 161
>gi|313835593|gb|EFS73307.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL037PA2]
gi|314928689|gb|EFS92520.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL044PA1]
gi|314970294|gb|EFT14392.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL037PA3]
Length = 181
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAI 65
+ + F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP
Sbjct: 16 KGVAQMTFNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLD 75
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+G+R + + +E+ +++R + + WSRR + K++SG+++ +AEVVRDL R
Sbjct: 76 LVGVRDVVDDEGLEKVFEILRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRR 135
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ S E+++ A +V E+A + + +A +++ L+S
Sbjct: 136 ERDRGLSAGEKRMLSKARQILVSELALAKRVEDDQAEEMLDEVLAS 181
>gi|300859178|ref|YP_003784161.1| putative transcription factor [Corynebacterium pseudotuberculosis
FRC41]
gi|300686632|gb|ADK29554.1| putative transcription factor [Corynebacterium pseudotuberculosis
FRC41]
gi|302206868|gb|ADL11210.1| Transcriptional regulator [Corynebacterium pseudotuberculosis C231]
gi|308277120|gb|ADO27019.1| Transcriptional regulator [Corynebacterium pseudotuberculosis I19]
Length = 193
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 4/173 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG I I+++E+ G LEF V+ ++ + ++VP A +G+R +
Sbjct: 2 EFKVGDTVVYPHHGAAVIEAIEQREMNGETLEFLVLHINQSDLVVRVPSKNAELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +++ +R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VDDEGLQKVFGFLREIDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQD 185
E+++ A +V E+A +I E +A + L+ + E+ + D
Sbjct: 122 AGEKRMLAKARQVLVGELALAENIDENKA----DELLAQVDATVERHRAAGVD 170
>gi|329890831|ref|ZP_08269174.1| carD-like/TRCF domain protein [Brevundimonas diminuta ATCC 11568]
gi|328846132|gb|EGF95696.1| carD-like/TRCF domain protein [Brevundimonas diminuta ATCC 11568]
Length = 181
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 97/162 (59%), Positives = 125/162 (77%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYPAHGVG + I+ QEVAGM LE +V+ F+ +KM L+VP KA G+R L
Sbjct: 8 EFKVGDAVVYPAHGVGKVAAIETQEVAGMALEVYVVTFEHEKMTLRVPTKKAKTAGLRTL 67
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR ++QPE+S
Sbjct: 68 AADDTVSKALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAETQPEQS 127
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YSERQLYESAL+RM RE+AA N I + A+ L+ +LS+K
Sbjct: 128 YSERQLYESALDRMAREVAAANKIDKDAAMALLGKSLSAKKP 169
>gi|23502623|ref|NP_698750.1| transcriptional regulator [Brucella suis 1330]
gi|82700550|ref|YP_415124.1| transcription factor CarD [Brucella melitensis biovar Abortus 2308]
gi|148558867|ref|YP_001259610.1| putative transcriptional regulator [Brucella ovis ATCC 25840]
gi|161619691|ref|YP_001593578.1| hypothetical protein BCAN_A1804 [Brucella canis ATCC 23365]
gi|163845343|ref|YP_001622998.1| hypothetical protein BSUIS_B1242 [Brucella suis ATCC 23445]
gi|189024848|ref|YP_001935616.1| CarD family transcriptional regulator [Brucella abortus S19]
gi|225853216|ref|YP_002733449.1| hypothetical protein BMEA_A1818 [Brucella melitensis ATCC 23457]
gi|254694417|ref|ZP_05156245.1| hypothetical protein Babob3T_07112 [Brucella abortus bv. 3 str.
Tulya]
gi|254698076|ref|ZP_05159904.1| hypothetical protein Babob28_10303 [Brucella abortus bv. 2 str.
86/8/59]
gi|254700418|ref|ZP_05162246.1| hypothetical protein Bsuib55_06119 [Brucella suis bv. 5 str. 513]
gi|254703537|ref|ZP_05165365.1| hypothetical protein Bsuib36_06359 [Brucella suis bv. 3 str. 686]
gi|254708586|ref|ZP_05170414.1| hypothetical protein BpinM_16983 [Brucella pinnipedialis
M163/99/10]
gi|254708772|ref|ZP_05170583.1| hypothetical protein BpinB_00646 [Brucella pinnipedialis B2/94]
gi|254714615|ref|ZP_05176426.1| hypothetical protein BcetM6_15022 [Brucella ceti M644/93/1]
gi|254717513|ref|ZP_05179324.1| hypothetical protein BcetM_14151 [Brucella ceti M13/05/1]
gi|254719759|ref|ZP_05181570.1| hypothetical protein Bru83_09478 [Brucella sp. 83/13]
gi|256030298|ref|ZP_05443912.1| hypothetical protein BpinM2_06566 [Brucella pinnipedialis
M292/94/1]
gi|256045367|ref|ZP_05448261.1| hypothetical protein Bmelb1R_12807 [Brucella melitensis bv. 1 str.
Rev.1]
gi|256061797|ref|ZP_05451932.1| hypothetical protein Bneo5_15748 [Brucella neotomae 5K33]
gi|256255678|ref|ZP_05461214.1| hypothetical protein BcetB_15638 [Brucella ceti B1/94]
gi|256258180|ref|ZP_05463716.1| hypothetical protein Babob9C_12716 [Brucella abortus bv. 9 str.
C68]
gi|256263295|ref|ZP_05465827.1| transcription factor CarD [Brucella melitensis bv. 2 str. 63/9]
gi|256370172|ref|YP_003107683.1| transcriptional regulator, CarD family [Brucella microti CCM 4915]
gi|260167972|ref|ZP_05754783.1| transcriptional regulator, CarD family protein [Brucella sp. F5/99]
gi|260547126|ref|ZP_05822864.1| transcription factor CarD [Brucella abortus NCTC 8038]
gi|260565739|ref|ZP_05836222.1| transcription factor CarD [Brucella melitensis bv. 1 str. 16M]
gi|260568843|ref|ZP_05839311.1| transcription factor CarD [Brucella suis bv. 4 str. 40]
gi|260755460|ref|ZP_05867808.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
gi|260758682|ref|ZP_05871030.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
gi|260762517|ref|ZP_05874854.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
gi|260884478|ref|ZP_05896092.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
gi|261214731|ref|ZP_05929012.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
gi|261219348|ref|ZP_05933629.1| transcriptional regulator [Brucella ceti M13/05/1]
gi|261222884|ref|ZP_05937165.1| transcriptional regulator [Brucella ceti B1/94]
gi|261316093|ref|ZP_05955290.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
gi|261316265|ref|ZP_05955462.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|261322409|ref|ZP_05961606.1| transcriptional regulator [Brucella ceti M644/93/1]
gi|261325799|ref|ZP_05964996.1| transcriptional regulator [Brucella neotomae 5K33]
gi|261750916|ref|ZP_05994625.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
gi|261754170|ref|ZP_05997879.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
gi|261757414|ref|ZP_06001123.1| transcription factor CarD [Brucella sp. F5/99]
gi|265984778|ref|ZP_06097513.1| transcriptional regulator [Brucella sp. 83/13]
gi|265987329|ref|ZP_06099886.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
gi|265991795|ref|ZP_06104352.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
gi|265995635|ref|ZP_06108192.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
gi|265998843|ref|ZP_06111400.1| transcriptional regulator [Brucella ceti M490/95/1]
gi|306839455|ref|ZP_07472263.1| transcriptional regulator [Brucella sp. NF 2653]
gi|306844751|ref|ZP_07477336.1| transcriptional regulator [Brucella sp. BO1]
gi|23348628|gb|AAN30665.1| transcriptional regulator, putative [Brucella suis 1330]
gi|82616651|emb|CAJ11733.1| Transcription factor CarD [Brucella melitensis biovar Abortus 2308]
gi|148370124|gb|ABQ60103.1| putative transcriptional regulator [Brucella ovis ATCC 25840]
gi|161336502|gb|ABX62807.1| Hypothetical protein BCAN_A1804 [Brucella canis ATCC 23365]
gi|163676066|gb|ABY40176.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|189020420|gb|ACD73142.1| Transcription factor CarD [Brucella abortus S19]
gi|225641581|gb|ACO01495.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|256000335|gb|ACU48734.1| transcriptional regulator, CarD family [Brucella microti CCM 4915]
gi|260095491|gb|EEW79369.1| transcription factor CarD [Brucella abortus NCTC 8038]
gi|260151112|gb|EEW86207.1| transcription factor CarD [Brucella melitensis bv. 1 str. 16M]
gi|260154227|gb|EEW89309.1| transcription factor CarD [Brucella suis bv. 4 str. 40]
gi|260669000|gb|EEX55940.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
gi|260672943|gb|EEX59764.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
gi|260675568|gb|EEX62389.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
gi|260874006|gb|EEX81075.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
gi|260916338|gb|EEX83199.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
gi|260921468|gb|EEX88121.1| transcriptional regulator [Brucella ceti B1/94]
gi|260924437|gb|EEX91005.1| transcriptional regulator [Brucella ceti M13/05/1]
gi|261295099|gb|EEX98595.1| transcriptional regulator [Brucella ceti M644/93/1]
gi|261295488|gb|EEX98984.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|261301779|gb|EEY05276.1| transcriptional regulator [Brucella neotomae 5K33]
gi|261305119|gb|EEY08616.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
gi|261737398|gb|EEY25394.1| transcription factor CarD [Brucella sp. F5/99]
gi|261740669|gb|EEY28595.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
gi|261743923|gb|EEY31849.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
gi|262553532|gb|EEZ09301.1| transcriptional regulator [Brucella ceti M490/95/1]
gi|262766919|gb|EEZ12537.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
gi|263002751|gb|EEZ15154.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
gi|263093262|gb|EEZ17359.1| transcription factor CarD [Brucella melitensis bv. 2 str. 63/9]
gi|264659526|gb|EEZ29787.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
gi|264663370|gb|EEZ33631.1| transcriptional regulator [Brucella sp. 83/13]
gi|306274923|gb|EFM56693.1| transcriptional regulator [Brucella sp. BO1]
gi|306405400|gb|EFM61671.1| transcriptional regulator [Brucella sp. NF 2653]
gi|326409773|gb|ADZ66838.1| Transcription factor CarD [Brucella melitensis M28]
gi|326539490|gb|ADZ87705.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 191
Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 129/188 (68%), Positives = 153/188 (81%), Gaps = 2/188 (1%)
Query: 1 MTFQQKRDAMRQG-FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
M+ QQK+ + +G F+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV
Sbjct: 1 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV
Sbjct: 61 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K+
Sbjct: 121 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLAKG-PKRGKA 179
Query: 180 TSENQDKA 187
+E D
Sbjct: 180 EAELDDDE 187
>gi|254441381|ref|ZP_05054874.1| CarD-like transcriptional regulator family [Octadecabacter
antarcticus 307]
gi|198251459|gb|EDY75774.1| CarD-like transcriptional regulator family [Octadecabacter
antarcticus 307]
Length = 170
Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 95/165 (57%), Positives = 119/165 (72%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ + + +VYPAHGVG + I+ QE+AG +LE FVIAF+KDKM L+VP KA ++
Sbjct: 2 AKKKYDYSPNDFVVYPAHGVGKVVSIETQEIAGFELEMFVIAFEKDKMTLRVPTNKAEEV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMR L+ V +K +RGKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVRDLHR D
Sbjct: 62 GMRSLASTDVVADCMKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRADD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
Q E+SYSERQLYE+AL R+ RE AAV + +E EA I L S+
Sbjct: 122 QREQSYSERQLYEAALERLTREFAAVGNGNELEAGTEITDTLQSR 166
>gi|19553858|ref|NP_601860.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
gi|62391499|ref|YP_226901.1| CarD-like transcriptional regulator [Corynebacterium glutamicum
ATCC 13032]
gi|21325433|dbj|BAC00055.1| Transcriptional regulators, similar to M. xanthus CarD
[Corynebacterium glutamicum ATCC 13032]
gi|41326841|emb|CAF20685.1| CarD-like transcriptional regulator [Corynebacterium glutamicum
ATCC 13032]
Length = 198
Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 87/174 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG I+ ++++E+ G +++ V+ + + ++VP A +G+R +
Sbjct: 2 EFKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEEGLQKVFSVLREIDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186
E+++ A +V E+A ++ + +A + + + + ++K
Sbjct: 122 AGEKRMLSKARQVLVGELALAETVDDEKADAFLSQVDETIARHRADLLGDEEEK 175
>gi|134298063|ref|YP_001111559.1| CarD family transcriptional regulator [Desulfotomaculum reducens
MI-1]
gi|134050763|gb|ABO48734.1| transcriptional regulator, CarD family [Desulfotomaculum reducens
MI-1]
Length = 158
Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 87/158 (55%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ D+G+R +
Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEVLGKKRQYYILRLPIGDMKVMIPISNCDDVGLRGI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ V L+++ G+ V W+RR + KI SGD+ +AEVVR+L D + S
Sbjct: 61 IDRDEVSTVLEVLEGQTTVMSGNWNRRYRANLEKIKSGDIYEVAEVVRNLLTRDKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ E+A ++ E+ + E +A +LI+ +
Sbjct: 121 SGERKMLENARQILISELVLAAEMEETKARSLIDEVFA 158
>gi|284028991|ref|YP_003378922.1| CarD family transcriptional regulator [Kribbella flavida DSM 17836]
gi|283808284|gb|ADB30123.1| transcriptional regulator, CarD family [Kribbella flavida DSM
17836]
Length = 161
Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFV-IAFDKDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I +I+ +++ G + V ++ + ++VP +G+R +
Sbjct: 3 FTVGETVVYPNHGAAVIEDIETRQIKGEDKTYLVLRIVAQNDLVVRVPACNLDLVGVRDV 62
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +ER ++R + T WSRR + K++SGD++ +AEVVRDL R + S
Sbjct: 63 VDQAGLERVFDVLRAPHTEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLS 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A +++ L+S
Sbjct: 123 AGEKRMLAKARQILVSELALAEHTNEDKAEAILDEVLAS 161
>gi|256824253|ref|YP_003148213.1| CarD family transcriptional regulator [Kytococcus sedentarius DSM
20547]
gi|256687646|gb|ACV05448.1| transcriptional regulator, CarD family [Kytococcus sedentarius DSM
20547]
Length = 160
Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 84/158 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I E+K+++V G ++ + + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAALIEEVKQRKVKGKEMTYLKLKVAQGDLTIEVPAENCDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+A +E+ ++R + + T WSRR + K+ SGD+I +AEVVRDL R + S
Sbjct: 63 DAEGLEKVFGVLRAENCEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRREQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E A ++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAEKTDEERAEATLDEVLAS 160
>gi|325000162|ref|ZP_08121274.1| CarD family transcriptional regulator [Pseudonocardia sp. P1]
Length = 163
Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 84/161 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G ++++ V+ + + +++P +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEAIETRTIKGEEVQYLVLKVQQGDLTVRIPADNVEVVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+ +AEVVRDL R + S
Sbjct: 63 GQEGLDRVFEVLRAPHTEEPTNWSRRYKANWEKLTSGDVNKVAEVVRDLWRREKDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ A +V E+A E A L++ L++ ++
Sbjct: 123 GEKRMLGKARQILVSELALAEGTDEERAEVLLDEVLATATA 163
>gi|307294532|ref|ZP_07574374.1| transcriptional regulator, CarD family [Sphingobium
chlorophenolicum L-1]
gi|306879006|gb|EFN10224.1| transcriptional regulator, CarD family [Sphingobium
chlorophenolicum L-1]
Length = 175
Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 88/173 (50%), Positives = 126/173 (72%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
A F G+++VYP HGVG + E++++++AGM+LE +V+ F+K++M L+VP KA +
Sbjct: 2 AAKALSFDVGDYVVYPKHGVGRVIELQKEQIAGMELELYVLRFEKERMTLRVPTNKAEGV 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS +E A++ ++GK +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D
Sbjct: 62 GMRKLSSNKTLEEAVETLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L+ + K K
Sbjct: 122 QPEQSYSERQIFEAASSRLARELAAMEETDEPSALKKILRILNEAAPKHVKVE 174
>gi|315657561|ref|ZP_07910443.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492033|gb|EFU81642.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 160
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 86/158 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG TI EI + + G++ E+ + + + +++P +G+R +
Sbjct: 3 FKVGETVVYPHHGAATIEEIITRVIGGVEREYLKLRVAQGDLTIQIPSENVEMVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +E +++R K + + WSRR + KI +GD++ +AEVVRDL R DS S
Sbjct: 63 DEAGLEHVFEVLRAKKTDEPSNWSRRYKANVEKIATGDVVKVAEVVRDLSRRDSNRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A ++ L+S
Sbjct: 123 GEKRMLSKARQILVSELALAEKTNEEDASLRLDEVLAS 160
>gi|229819270|ref|YP_002880796.1| CarD family transcriptional regulator [Beutenbergia cavernae DSM
12333]
gi|229565183|gb|ACQ79034.1| transcriptional regulator, CarD family [Beutenbergia cavernae DSM
12333]
Length = 160
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 79/158 (50%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EI + + G + + + + + ++VP +G+R +
Sbjct: 3 FNVGETVVYPHHGAALIEEISTRVIRGEEKLYLRLRVAQGDLTIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T WSRR + KI SGD+I +AEVVRDL R D S
Sbjct: 63 GKEGLDKVFEVLRAPYTEEPTNWSRRYKANVEKIASGDVIKVAEVVRDLSRRDQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E A +++ L+S
Sbjct: 123 GEKRMLARARQILVSELALAEKTEEDRAEAILDEVLAS 160
>gi|90420275|ref|ZP_01228183.1| transcriptional regulator, CarD family [Aurantimonas manganoxydans
SI85-9A1]
gi|90335609|gb|EAS49359.1| transcriptional regulator, CarD family [Aurantimonas manganoxydans
SI85-9A1]
Length = 205
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 127/176 (72%), Positives = 147/176 (83%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
QK+ + RQGF+TGE IVYPAHGVG I I+EQEVAGMKLE FVI F+KDKM LKVPV
Sbjct: 2 SSQKKASNRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVPVA 61
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
KA +GMRKLSE FVER+LK+V+G+ARVK+TMWSRRAQEYDAKINSGDLI IAEVVRDL
Sbjct: 62 KAESVGMRKLSETDFVERSLKVVQGRARVKKTMWSRRAQEYDAKINSGDLIQIAEVVRDL 121
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
+R DSQPE+SYSERQLYE+AL RM RE+AAVN +SE EA+ LIE+NL+ + K
Sbjct: 122 YRADSQPEQSYSERQLYEAALGRMARELAAVNEVSETEAVQLIELNLNKGPKRVAK 177
>gi|302331432|gb|ADL21626.1| Transcriptional regulator [Corynebacterium pseudotuberculosis 1002]
Length = 193
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 4/173 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG I I+++E+ G LEF V+ ++ + ++VP A +G+R +
Sbjct: 2 EFKVGDTVVYPHHGAAVIEAIEQREMNGETLEFLVLHINQSDLVVRVPSKNAELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +++ +R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VDDEGLQKVFGFLREIDVEEAGNWSRRFKANQGRLASGDVNKVAEVVRDLWRRDQGRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQD 185
E+++ A +V E+A +I E +A + L+ + E+ + D
Sbjct: 122 AGEKRMLAKARQVLVGELALAENIDENKA----DELLAQVDATVERHRAAGVD 170
>gi|114705884|ref|ZP_01438787.1| hypothetical protein FP2506_15499 [Fulvimarina pelagi HTCC2506]
gi|114538730|gb|EAU41851.1| hypothetical protein FP2506_15499 [Fulvimarina pelagi HTCC2506]
Length = 204
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 123/178 (69%), Positives = 146/178 (82%), Gaps = 1/178 (0%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ +K + +GF+TGE IVYPAHGVG I I+EQEVAGMKLE FV+ F+KDKM LKVP
Sbjct: 1 MSSPKK-ASASKGFKTGESIVYPAHGVGKIVAIEEQEVAGMKLELFVVDFEKDKMRLKVP 59
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA +GMRKLSE FV+RALK+V+G+ARVK+TMWSRRAQEYDAKINSGDLI IAEVVR
Sbjct: 60 VAKAKSVGMRKLSETDFVDRALKVVQGRARVKKTMWSRRAQEYDAKINSGDLIQIAEVVR 119
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
DL+R D+QPE+SYSERQLYE+AL RM RE+AAVN +SE EA+ LIE NL+ + K
Sbjct: 120 DLYRADTQPEQSYSERQLYEAALGRMARELAAVNEVSETEAVRLIEENLNKGPKRGPK 177
>gi|149185279|ref|ZP_01863596.1| transcriptional regulator [Erythrobacter sp. SD-21]
gi|148831390|gb|EDL49824.1| transcriptional regulator [Erythrobacter sp. SD-21]
Length = 177
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 84/175 (48%), Positives = 125/175 (71%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ F G+++VYP HGVG + E++ +E+AGM+L+ +V+ F+K++M L+VPV K I
Sbjct: 2 ASKADAFDVGDYVVYPKHGVGRVIELQSEEIAGMQLDLYVLRFEKERMTLRVPVNKVESI 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS ++ A++ ++GK +VKRTMWSRRAQEY+AKINSG+++ IAEV RDL R D
Sbjct: 62 GMRKLSSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPDD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182
QPE+SYSERQ++E+A +R+ RE+AA+ E A+ I L + + ++T E
Sbjct: 122 QPEQSYSERQIFEAASSRLARELAAMEKTDEATALEKILDVLREHAPQYYENTEE 176
>gi|182680042|ref|YP_001834188.1| CarD family transcriptional regulator [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635925|gb|ACB96699.1| transcriptional regulator, CarD family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 368
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 108/175 (61%), Positives = 137/175 (78%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+A R GF+ E IVYPAHGVG I I+EQEVAG KLE FVI+F KDKM LKVP KA+ +
Sbjct: 178 NAQRHGFKPLEFIVYPAHGVGQIIAIEEQEVAGFKLELFVISFVKDKMILKVPTPKAVSV 237
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
MRKL+EA +++AL+ + G+AR+KRTMWSRRAQEY+AKINSGDLIA+AEVVRDL+R+D+
Sbjct: 238 RMRKLAEADVIDKALETLTGRARIKRTMWSRRAQEYEAKINSGDLIAVAEVVRDLYRSDA 297
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182
QPE+SYSERQLYE+AL+R+ RE+AAV ++E E++ LIE L + E
Sbjct: 298 QPEQSYSERQLYEAALDRVARELAAVQKLTETESLKLIEAQLLKGPRRGGSKVEE 352
>gi|256372655|ref|YP_003110479.1| CarD family transcriptional regulator [Acidimicrobium ferrooxidans
DSM 10331]
gi|256009239|gb|ACU54806.1| transcriptional regulator, CarD family [Acidimicrobium ferrooxidans
DSM 10331]
Length = 159
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 76/157 (48%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F G+ +VYP HG IT + E G E+FV+ + +++PV ++G+R++
Sbjct: 3 FDVGDKVVYPQHGAAVITGREVVEAFGEAKEYFVVTVAYGDLTVRLPVDAVDEVGLREVI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE ++ K WSRR + + K+ SGD+ +AEVVR+L D S
Sbjct: 63 NDEEVEEVFAVLGKKDVRMPANWSRRYKNHLEKVKSGDIYQVAEVVRNLTLRDHDKGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ A +V E+ ++ EA ++ L+
Sbjct: 123 GERRMLAKARQVLVSELTFALDVAPEEAEARLDKALA 159
>gi|291297677|ref|YP_003508955.1| CarD family transcriptional regulator [Stackebrandtia nassauensis
DSM 44728]
gi|290566897|gb|ADD39862.1| transcriptional regulator, CarD family [Stackebrandtia nassauensis
DSM 44728]
Length = 161
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 86/160 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I ++ + + G++ E+ V+ ++ + ++VP G +G+R++
Sbjct: 2 SFSVGETVVYPHHGAALIEAVETRTIKGVEQEYLVLRVEQGDLTVRVPAGNVELVGVREV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
A + ++R + T WSRR + K+ SG+ + +AEVVRDL R D + S
Sbjct: 62 VGAEGLTEVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRDRERGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A + +V E+A + ++ +A L++ L+
Sbjct: 122 AGEKRMLTKARDILVGEVALAEASTKDDAEVLLDKVLAEA 161
>gi|62290636|ref|YP_222429.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941]
gi|254689925|ref|ZP_05153179.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
gi|254730960|ref|ZP_05189538.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
gi|256114331|ref|ZP_05455069.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
gi|256160471|ref|ZP_05458160.1| transcriptional regulator [Brucella ceti M490/95/1]
gi|297249030|ref|ZP_06932738.1| CarD family transcriptional regulator [Brucella abortus bv. 5 str.
B3196]
gi|62196768|gb|AAX75068.1| hypothetical transcriptional regulator [Brucella abortus bv. 1 str.
9-941]
gi|297174163|gb|EFH33520.1| CarD family transcriptional regulator [Brucella abortus bv. 5 str.
B3196]
Length = 194
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 129/188 (68%), Positives = 153/188 (81%), Gaps = 2/188 (1%)
Query: 1 MTFQQKRDAMRQG-FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
M+ QQK+ + +G F+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV
Sbjct: 4 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 63
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV
Sbjct: 64 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 123
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K+
Sbjct: 124 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLAKG-PKRGKA 182
Query: 180 TSENQDKA 187
+E D
Sbjct: 183 EAELDDDE 190
>gi|25029078|ref|NP_739132.1| putative transcription factor [Corynebacterium efficiens YS-314]
gi|23494365|dbj|BAC19332.1| putative transcription factor [Corynebacterium efficiens YS-314]
Length = 200
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 89/174 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG IT ++++E+ G +++ V+ ++ + ++VP A +G+R +
Sbjct: 4 DFKVGDTVVYPHHGAAMITALEQRELNGETMDYLVLKINQSDLVVRVPAKNAELVGVRDV 63
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 64 VGEEGLQKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLS 123
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186
E+++ A +V E+A ++ E +A + + + ++++K
Sbjct: 124 AGEKRMLAKARQVLVGELALAETVDEAKADAFLAEVDETIARHRADLLGDDEEK 177
>gi|298345944|ref|YP_003718631.1| putative transcription factor CarD [Mobiluncus curtisii ATCC 43063]
gi|304390353|ref|ZP_07372306.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315654533|ref|ZP_07907439.1| CarD family transcriptional regulator [Mobiluncus curtisii ATCC
51333]
gi|298236005|gb|ADI67137.1| possible transcription factor CarD [Mobiluncus curtisii ATCC 43063]
gi|304326109|gb|EFL93354.1| CarD family transcriptional regulator [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315490997|gb|EFU80616.1| CarD family transcriptional regulator [Mobiluncus curtisii ATCC
51333]
Length = 160
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 86/158 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG TI EI + + G++ E+ + + + +++P +G+R +
Sbjct: 3 FKVGETVVYPHHGAATIEEIITRVIGGVEREYLKLRVAQGDLTIQIPSENVEMVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +E +++R K + + WSRR + KI +GD++ +AEVVRDL R DS S
Sbjct: 63 DEAGLEHVFEVLRAKKTDEPSNWSRRYKANVEKIATGDVVKVAEVVRDLSRRDSNRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A ++ L+S
Sbjct: 123 GEKRMLTKARQILVSELALAEKTNEEDASLRLDEVLAS 160
>gi|172041356|ref|YP_001801070.1| putative transcription factor [Corynebacterium urealyticum DSM
7109]
gi|171852660|emb|CAQ05636.1| putative transcription factor [Corynebacterium urealyticum DSM
7109]
Length = 190
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 85/179 (47%), Gaps = 3/179 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG I I+++E G +++ V+ + + ++VP A +G+R +
Sbjct: 2 DFKVGDTVVYPHHGAAQIEGIEQREFKGETVDYLVLRLYQGDLSVRVPAANAEKVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++R + WSRR + ++ SGD +AEVVRDL R D S
Sbjct: 62 VGEEGLLKVFSVLRETDVEEAGNWSRRYKANQERLTSGDQNKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA---INLIEVNLSSKSSKTEKSTSENQDKAA 188
E+++ A +V E+A + + + +A + + + + + + + + A
Sbjct: 122 AGEKRMLAKARQILVGELALADGVDDKKADAMLAEMHETIERHREQAAAARAADTEGDA 180
>gi|254473139|ref|ZP_05086537.1| transcription factor CarD [Pseudovibrio sp. JE062]
gi|211957860|gb|EEA93062.1| transcription factor CarD [Pseudovibrio sp. JE062]
Length = 193
Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 111/186 (59%), Positives = 141/186 (75%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M K+ A RQGF+TGEHI+YP+HGVG IT I+EQ VAG LE VI F++DKM L+VP
Sbjct: 1 MATPAKKTAQRQGFKTGEHIIYPSHGVGLITAIEEQTVAGYSLELLVIEFEQDKMTLRVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V K +GMRKLS+A V+++L+ + GK RVKRTMWSRRAQEY+AKINSGDL++ AEVVR
Sbjct: 61 VAKIASVGMRKLSDASTVKKSLETIAGKPRVKRTMWSRRAQEYEAKINSGDLVSTAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL+R+D+QPE+SYSERQLYE+AL+RM REIAAV ++ EAI IE LS+ + K+
Sbjct: 121 DLYRSDAQPEQSYSERQLYEAALDRMAREIAAVQKQTDTEAIRQIEGVLSTAPGRAAKAA 180
Query: 181 SENQDK 186
+
Sbjct: 181 PAAGED 186
>gi|315226414|ref|ZP_07868202.1| CarD family transcriptional regulator [Parascardovia denticolens
DSM 10105]
gi|315120546|gb|EFT83678.1| CarD family transcriptional regulator [Parascardovia denticolens
DSM 10105]
Length = 260
Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG I EI E+ + G+ + + + + VP +G+R+
Sbjct: 32 EYKVGDTVVYPRHGAARIEEITERTLRGVTRIYLRLTVLSSDGLEISVPADAVDKVGVRE 91
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE- 130
+ V + +++R ++T WSRR + KI +GD+ IAEVVRDL + D
Sbjct: 92 VVNGVAVAKVFEILRTPIVEEKTNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDDDEHG 151
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A N + EIA I + EA L++VNL EK ++ ++AA
Sbjct: 152 LSAGEKRMLSKARNILTSEIALSEKIDDEEAQRLLDVNLGYQDPEPGDEKHHAQAPEEAA 211
>gi|259505930|ref|ZP_05748832.1| transcription factor [Corynebacterium efficiens YS-314]
gi|259166411|gb|EEW50965.1| transcription factor [Corynebacterium efficiens YS-314]
Length = 198
Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 89/174 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG IT ++++E+ G +++ V+ ++ + ++VP A +G+R +
Sbjct: 2 DFKVGDTVVYPHHGAAMITALEQRELNGETMDYLVLKINQSDLVVRVPAKNAELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEEGLQKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186
E+++ A +V E+A ++ E +A + + + ++++K
Sbjct: 122 AGEKRMLAKARQVLVGELALAETVDEAKADAFLAEVDETIARHRADLLGDDEEK 175
>gi|269957734|ref|YP_003327523.1| CarD family transcriptional regulator [Xylanimonas cellulosilytica
DSM 15894]
gi|269306415|gb|ACZ31965.1| transcriptional regulator, CarD family [Xylanimonas cellulosilytica
DSM 15894]
Length = 160
Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 83/158 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK + + G + + + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAALIEEIKVRTIRGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D+ S
Sbjct: 63 DQQGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLSRRDADRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E +A +++ L+S
Sbjct: 123 GEKRMLSKARQILVSELALAEHTEEDKAEAILDEVLAS 160
>gi|225022144|ref|ZP_03711336.1| hypothetical protein CORMATOL_02177 [Corynebacterium matruchotii
ATCC 33806]
gi|224945077|gb|EEG26286.1| hypothetical protein CORMATOL_02177 [Corynebacterium matruchotii
ATCC 33806]
Length = 235
Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 77/156 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG I I+++E+ G LE+ V+ + + ++VP A +G+R +
Sbjct: 41 EFKVGDTVVYPHHGAAVIEAIEQREMGGETLEYLVLQIHQSDLVVRVPSKNAETVGVRDV 100
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + +R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 101 VGEAGLRKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGLS 160
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E+++ A +V E+A E +A L+
Sbjct: 161 AGEKRMLAKARQVLVGELALAEIKDEAKANELLAEV 196
>gi|239832849|ref|ZP_04681178.1| transcriptional regulator [Ochrobactrum intermedium LMG 3301]
gi|239825116|gb|EEQ96684.1| transcriptional regulator [Ochrobactrum intermedium LMG 3301]
Length = 209
Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 124/176 (70%), Positives = 146/176 (82%), Gaps = 1/176 (0%)
Query: 1 MTFQQKRDAMRQG-FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
M+ QQK+ + +G F+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV
Sbjct: 17 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 76
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV
Sbjct: 77 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 136
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
RDL R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIE NL+ +
Sbjct: 137 RDLFRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEANLAKGPKR 192
>gi|254486669|ref|ZP_05099874.1| transcriptional regulator, CarD family [Roseobacter sp. GAI101]
gi|214043538|gb|EEB84176.1| transcriptional regulator, CarD family [Roseobacter sp. GAI101]
Length = 171
Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 102/172 (59%), Positives = 124/172 (72%), Gaps = 5/172 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ +K FR E +VYPAHGVG I ++EQE+AG+ LE FVIAF+KDKM L+VP
Sbjct: 1 MSKSKK-----LDFRPNEFVVYPAHGVGQIVSVEEQEIAGISLELFVIAFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 THKATEIGMRSLSSPDTITHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV E A + L S+
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVAGGDELAAAKQVGDVLESR 167
>gi|145296658|ref|YP_001139479.1| hypothetical protein cgR_2565 [Corynebacterium glutamicum R]
gi|140846578|dbj|BAF55577.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 198
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 87/174 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG I+ ++++E+ G +++ V+ + + ++VP A +G+R +
Sbjct: 2 EFKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEEGLQKVFSVLREIDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186
E+++ A +V E+A ++ + +A + + + + ++K
Sbjct: 122 AGEKRMLSKARQVLVGELALAETVDDVKADAFLSQVDETIARHRADLLGDEEEK 175
>gi|323359180|ref|YP_004225576.1| CarD family transcriptional regulator [Microbacterium testaceum
StLB037]
gi|323275551|dbj|BAJ75696.1| transcriptional regulator, similar to M. xanthus CarD
[Microbacterium testaceum StLB037]
Length = 160
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 81/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG TI E+KE+ + G ++ + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAATIIEVKERVIKGETKKYLKLNVTQGDLVIEVPADNVDLVGVRDVI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R ++R + T WSRR + K+ SGD+I ++EVVRDL R D S
Sbjct: 63 GKEGLDRVFDVLRAPFTEEPTNWSRRYKANLEKLASGDVIKVSEVVRDLWRRDQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E A +++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAEKTDEDRASVVLDEVLAS 160
>gi|169830398|ref|YP_001716380.1| CarD family transcriptional regulator [Candidatus Desulforudis
audaxviator MP104C]
gi|169637242|gb|ACA58748.1| transcriptional regulator, CarD family [Candidatus Desulforudis
audaxviator MP104C]
Length = 158
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 86/158 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG G I I+E+E+ G + +++V+ M + VP +IG+R++
Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEILGERQQYYVLRLPVGNMKVMVPTANGPNIGLRQV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
V++ +++ + W+RR + KI SG++ +AEVVR+L R + + S
Sbjct: 61 IGQEEVQKVFGILKDVSTQMPGNWNRRYRANLEKIKSGNIYEVAEVVRNLARREREKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ ESA ++ E+ + E +A +++E +
Sbjct: 121 SGEKRMLESARQILISELVLATEVEEDKARSMLEEMFA 158
>gi|89893187|ref|YP_516674.1| hypothetical protein DSY0441 [Desulfitobacterium hafniense Y51]
gi|219666460|ref|YP_002456895.1| CarD family transcriptional regulator [Desulfitobacterium hafniense
DCB-2]
gi|89332635|dbj|BAE82230.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536720|gb|ACL18459.1| transcriptional regulator, CarD family [Desulfitobacterium
hafniense DCB-2]
Length = 158
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 84/158 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I I+E+EV G +++V+ M + +P+ +G+R +
Sbjct: 1 MFDIGDRVVYPMHGAGIIEAIEEREVLGESHQYYVMNIPVGNMKVYIPLKNVNQLGIRGV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ V + LK++ ++ + W+RR + +I SGD+ ++AEVVR L + D + S
Sbjct: 61 ISSEEVPQVLKILENESTLPALAWNRRYRANMDRIKSGDIYSVAEVVRSLSQRDREKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++Y++A +V E+ + E I+ L+
Sbjct: 121 TGEKKMYDNAYQILVSELILAEGVQADEMSERIKGLLA 158
>gi|154252146|ref|YP_001412970.1| CarD family transcriptional regulator [Parvibaculum lavamentivorans
DS-1]
gi|154156096|gb|ABS63313.1| transcriptional regulator, CarD family [Parvibaculum
lavamentivorans DS-1]
Length = 350
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 109/178 (61%), Positives = 139/178 (78%), Gaps = 1/178 (0%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
R F+ E +VYPAHGVG I +I+EQEVAG KLE FVI FDK+KM L+VP KA +GMR
Sbjct: 173 RANFKAKEFVVYPAHGVGQILDIEEQEVAGHKLELFVINFDKEKMTLRVPTNKAGAVGMR 232
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
KLS+A V+ A++ +RG+AR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDL+R++ QPE
Sbjct: 233 KLSDAGVVDSAIETLRGRARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLYRSERQPE 292
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188
+SYSERQLYE+AL+RM RE+AAV I E AI +E L ++KT+K+ ++ A
Sbjct: 293 QSYSERQLYEAALDRMAREVAAVERIGEDAAIERVEQAL-QGAAKTDKAPKSDEASEA 349
>gi|167648071|ref|YP_001685734.1| CarD family transcriptional regulator [Caulobacter sp. K31]
gi|167350501|gb|ABZ73236.1| transcriptional regulator, CarD family [Caulobacter sp. K31]
Length = 170
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 97/162 (59%), Positives = 126/162 (77%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+H+VYPAHGVG+I ++ QEVAGM LE ++I FD +KM L+VP KA G+R L
Sbjct: 7 EFSVGDHVVYPAHGVGSIQGVETQEVAGMSLEVYIITFDHEKMTLRVPTKKAKTAGLRPL 66
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E + V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR ++QPE+S
Sbjct: 67 AEGNVVSQALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQS 126
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YSERQLYESAL+RM RE+AA+ I AI ++ +L ++
Sbjct: 127 YSERQLYESALDRMAREVAAIERIDREAAIGILTKSLVKTAA 168
>gi|147676622|ref|YP_001210837.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
gi|146272719|dbj|BAF58468.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
Length = 158
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 88/158 (55%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ ++G+R +
Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEVLGEKRQYYILRLPVGDMKVMIPITSGEEVGLRGV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ V+R ++R ++ W+RR + KI SG++ +AEVVR+L + D + S
Sbjct: 61 IDREGVQRVFHILRQQSSAMSPNWNRRYRANLEKIKSGNIYEVAEVVRNLVKRDREKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ ESA ++ E+ + E +A +L++ +
Sbjct: 121 SGERKMLESARQILLSELVLATELEEEKAQSLLDGAFA 158
>gi|240851257|ref|YP_002972660.1| transcriptional regulator, CarD family [Bartonella grahamii as4aup]
gi|240268380|gb|ACS51968.1| transcriptional regulator, CarD family [Bartonella grahamii as4aup]
Length = 194
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 120/188 (63%), Positives = 147/188 (78%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M Q + + F T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP
Sbjct: 1 MASQHGTSSKTKEFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ KA+ +GMRKLS + VERALK++RGKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR
Sbjct: 61 IAKALSVGMRKLSASDSVERALKVLRGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R++ QPE+SYSERQLY +AL RM REIA +NS+SE EAINLIE++LS+K + K+
Sbjct: 121 DLFRSNLQPEQSYSERQLYTAALERMAREIAVINSLSETEAINLIEMHLSNKPKREFKTE 180
Query: 181 SENQDKAA 188
E D+++
Sbjct: 181 REETDESS 188
>gi|85375450|ref|YP_459512.1| transcriptional regulator [Erythrobacter litoralis HTCC2594]
gi|84788533|gb|ABC64715.1| transcriptional regulator [Erythrobacter litoralis HTCC2594]
Length = 178
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 84/176 (47%), Positives = 123/176 (69%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
A F G+++VYP HGVG + E++ +E+AGM+LE +V+ F+K++M L+VP K I
Sbjct: 2 AAKALAFDVGDYVVYPKHGVGRVIELQNEEIAGMQLELYVLRFEKERMTLRVPTNKVESI 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS ++ A++ ++GK +VKRTMWSRRAQEY+AKINSG+++ IAEV RDL R D
Sbjct: 62 GMRKLSSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPDD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
QPE+SYSERQ++E+A +R+ RE+AA+ E A+ I L + + + E+
Sbjct: 122 QPEQSYSERQIFEAASSRLARELAAMEKTDEATALEKILDVLREHAPQYYNNEEED 177
>gi|319442432|ref|ZP_07991588.1| putative transcription factor [Corynebacterium variabile DSM 44702]
Length = 194
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 78/153 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG + I+++E G +++ V+ + + +KVP A +G+R +
Sbjct: 2 EFNIGDVVVYPHHGAAEVKGIEQREFKGQSVDYLVLRILQGDLLVKVPAANAELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEEGLQKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNRVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLI 165
E+++ A +V E+A + + ++ +I
Sbjct: 122 AGEKRMLAKARQVLVGELALAEGVDDKKSDEVI 154
>gi|294851010|ref|ZP_06791686.1| CarD family transcriptional regulator [Brucella sp. NVSL 07-0026]
gi|294821653|gb|EFG38649.1| CarD family transcriptional regulator [Brucella sp. NVSL 07-0026]
Length = 194
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 128/188 (68%), Positives = 152/188 (80%), Gaps = 2/188 (1%)
Query: 1 MTFQQKRDAMRQG-FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
M+ QQK+ + +G F+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV
Sbjct: 4 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 63
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA IGMRKLSE +VERALK+V+G+ARVKRTMW RRAQEYDAKINSGDLI+I+EVV
Sbjct: 64 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWLRRAQEYDAKINSGDLISISEVV 123
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
RDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+ K K+
Sbjct: 124 RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLAKG-PKRGKA 182
Query: 180 TSENQDKA 187
+E D
Sbjct: 183 EAELDDDE 190
>gi|308176321|ref|YP_003915727.1| CarD transcriptional regulator-like protein [Arthrobacter
arilaitensis Re117]
gi|307743784|emb|CBT74756.1| CarD transcriptional regulator-like protein [Arthrobacter
arilaitensis Re117]
Length = 161
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 84/159 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK +++ G + + + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAAMIEEIKMRKIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++ ++R + + T WSRR + K+ SGD+I +AEVVRDL R ++ S
Sbjct: 63 GQEGLDHVFDVLRAEFTEEPTNWSRRYKANVEKLASGDVIKVAEVVRDLWRRENDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A ++ E+A + E +A +L++ L+S
Sbjct: 123 GEKRMLAKARQVLISELALAKDLDEAKAESLLDEVLASA 161
>gi|85709786|ref|ZP_01040851.1| transcriptional regulator [Erythrobacter sp. NAP1]
gi|85688496|gb|EAQ28500.1| transcriptional regulator [Erythrobacter sp. NAP1]
Length = 178
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 84/169 (49%), Positives = 121/169 (71%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ F G+++VYP HGVG + E++ +E+AGM+LE +V+ F+K++M L+VPV K I
Sbjct: 2 ASNAPAFTVGDYVVYPKHGVGRVIELQSEEIAGMQLELYVLRFEKERMTLRVPVNKVESI 61
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMRKLS ++ A+ ++GK +VKRTMWSRRAQEY+AKINSG+++ IAEV RDL R D
Sbjct: 62 GMRKLSSDKTLKEAMDTLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPDD 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
QPE+SYSERQ++E+A +R+ RE+AA+ EP A+ I L + +
Sbjct: 122 QPEQSYSERQIFEAASSRLARELAAMEETDEPTALEKILEVLREHAPQY 170
>gi|323703787|ref|ZP_08115425.1| transcriptional regulator, CarD family [Desulfotomaculum
nigrificans DSM 574]
gi|323531256|gb|EGB21157.1| transcriptional regulator, CarD family [Desulfotomaculum
nigrificans DSM 574]
Length = 158
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 91/158 (57%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ + ++G+R++
Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEVLGEKRKYYILRLPIGDMKVMIPINNSEEVGLREI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
V++ + +++GK V T W+RR + KI SGD+ +AEVVR+L D + S
Sbjct: 61 IAPDEVKQVMGVLQGKTSVMSTNWNRRYRANLEKIKSGDIYEVAEVVRNLLTRDKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ E+A ++ E+ + E +A ++I+ +
Sbjct: 121 SGERKMLENARQILISELVLATELEEDKARSMIDGVFA 158
>gi|255262370|ref|ZP_05341712.1| transcriptional regulator, CarD family [Thalassiobium sp. R2A62]
gi|255104705|gb|EET47379.1| transcriptional regulator, CarD family [Thalassiobium sp. R2A62]
Length = 171
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 102/174 (58%), Positives = 127/174 (72%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ ++K + F + +VYPAHGVG + I+EQEVAG +LE FVIAF+KDKM L+VP
Sbjct: 1 MSKKKK-----RDFEPNDFVVYPAHGVGKVVSIEEQEVAGFELELFVIAFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KAI++GMR LS V A+K ++GKA+VK+ MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 THKAIEVGMRSLSTPDVVNHAMKTLKGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DLHR D Q E+SYSERQLYE+AL R+ REIAA S E A I L S+++
Sbjct: 116 DLHRADDQREQSYSERQLYEAALERLTREIAATGSGDEAIAAQEITDVLQSRAA 169
>gi|163797039|ref|ZP_02190995.1| Transcriptional regulator [alpha proteobacterium BAL199]
gi|159177786|gb|EDP62337.1| Transcriptional regulator [alpha proteobacterium BAL199]
Length = 166
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 82/172 (47%), Positives = 123/172 (71%), Gaps = 6/172 (3%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT + F+TG+ +VYP HGVG I + Q VAG +L+ VI F++D+M L++P
Sbjct: 1 MTKK------SSEFKTGDFVVYPTHGVGLIKGTETQIVAGTELDLLVIDFEQDRMTLRIP 54
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
VGKA G+R+LS ++ AL+ ++G+A+V+RTMWSRRAQEY+AKINSGD ++IAEVVR
Sbjct: 55 VGKARTSGLRRLSSRKQMDVALQKLKGRAKVRRTMWSRRAQEYEAKINSGDPVSIAEVVR 114
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DL R+ +Q ++SYSERQ+Y++A++R+ RE A + I E A++ +E + +
Sbjct: 115 DLRRSSNQADQSYSERQMYQAAIDRLAREFAKIEQIDEVTAVDRLEKLMDAA 166
>gi|258513613|ref|YP_003189835.1| transcriptional regulator, CarD family [Desulfotomaculum
acetoxidans DSM 771]
gi|257777318|gb|ACV61212.1| transcriptional regulator, CarD family [Desulfotomaculum
acetoxidans DSM 771]
Length = 158
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 86/158 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG G I I+E+EV G ++++ M + +P+ D+G+R++
Sbjct: 1 MFKIGDKVVYPMHGAGVIEAIEEKEVLGEIKHYYILRLPIGNMKVMIPIDHGRDVGLRQV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
V+ L+++ K+ W+RR + KI SG++ +AEVVR+L + D + S
Sbjct: 61 ITRDDVQMVLRILSDKSTSMPPNWNRRYRANLEKIKSGNIYEVAEVVRNLIKRDKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ E+A ++ E+ + E +A +L++ +
Sbjct: 121 SGERKMLENARQILISELVLATELEEDKAQSLVDGVFA 158
>gi|83955682|ref|ZP_00964262.1| transcriptional regulator, CarD family protein [Sulfitobacter sp.
NAS-14.1]
gi|83839976|gb|EAP79152.1| transcriptional regulator, CarD family protein [Sulfitobacter sp.
NAS-14.1]
Length = 171
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 103/172 (59%), Positives = 124/172 (72%), Gaps = 5/172 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ +K FR E +VYPAHGVG I ++EQEVAG+ LE FVIAF+KDKM L+VP
Sbjct: 1 MSKSKK-----LDFRPNEFVVYPAHGVGQIISVEEQEVAGISLELFVIAFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +IGMR LS + A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 THKATEIGMRALSSPDVISHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV E A + L S+
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVAGGDELAASKQVGDVLESR 167
>gi|114799783|ref|YP_762092.1| CarD family transcriptional regulator [Hyphomonas neptunium ATCC
15444]
gi|114739957|gb|ABI78082.1| transcriptional regulator, CarD family [Hyphomonas neptunium ATCC
15444]
Length = 174
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 101/160 (63%), Positives = 126/160 (78%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+K +A F G+ +VYPAHGVG IT I+ Q VAGM+LE +V+AFD+DKM L+VP +
Sbjct: 2 AKKAEARTHAFEVGQSVVYPAHGVGKITGIESQTVAGMQLEVYVVAFDQDKMILRVPTNR 61
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
A GMR L+ + V+ ALK + GKAR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDLH
Sbjct: 62 AEASGMRALAGSKLVDDALKTLGGKARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLH 121
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN 163
R D QPE+SYSERQLYESAL+RM RE+AAV +I + +A+
Sbjct: 122 RGDDQPEQSYSERQLYESALDRMARELAAVENIDKGKAME 161
>gi|319409358|emb|CBI83002.1| transcriptional factor [Bartonella schoenbuchensis R1]
Length = 194
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 116/188 (61%), Positives = 146/188 (77%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M Q+K+ + +GF T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP
Sbjct: 1 MASQRKKTSSVKGFSTSEYIVYPTHGVGQIIAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA+ IGMRKLSE+ VERALK ++GKARVKR MWSRRAQEYD KINSG+L+ IAEVVR
Sbjct: 61 VAKALSIGMRKLSESDLVERALKTLQGKARVKRAMWSRRAQEYDTKINSGNLVFIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R++ Q E+SYSERQLY +AL+RM REIA +N++SE EAINLIE +L+ +S + K+
Sbjct: 121 DLFRSELQSEQSYSERQLYAAALDRMAREIAIINNLSETEAINLIETHLTKESKRKFKAG 180
Query: 181 SENQDKAA 188
+ + +
Sbjct: 181 MDEEKDDS 188
>gi|320095399|ref|ZP_08027078.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977670|gb|EFW09334.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon
178 str. F0338]
Length = 171
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 81/161 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG TI EI + + G + + + ++ + ++VP +G+R +
Sbjct: 2 SFEIGQTVVYPHHGAATIEEITTRSIRGAEKTYLKLRVNQGDLTIEVPADNVDLVGVRDI 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +E L ++R + T WSRR + KI +GD++ +AEVVRDL R D + S
Sbjct: 62 VDEDGLEEVLSVLRAPYVEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A + E+A I + +A ++ L+
Sbjct: 122 TGEKRMLTKARGILTSELALARGIDKADAAARLDGILAEGR 162
>gi|117927289|ref|YP_871840.1| CarD family transcriptional regulator [Acidothermus cellulolyticus
11B]
gi|117647752|gb|ABK51854.1| transcriptional regulator, CarD family [Acidothermus cellulolyticus
11B]
Length = 160
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 82/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I I+ + + G + + V+ + + ++VP A +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEAIETRVINGQEKTYLVLKVAQGDLTVRVPAENAEFVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+ +AEVVRDL R D S
Sbjct: 63 SQDGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A +++ L S
Sbjct: 123 GEKRMLAKARQILVSELALAEGTNEDKAEAILDEVLGS 160
>gi|227876780|ref|ZP_03994889.1| transcription factor CarD [Mobiluncus mulieris ATCC 35243]
gi|269976308|ref|ZP_06183304.1| CarD family transcriptional regulator [Mobiluncus mulieris 28-1]
gi|306817728|ref|ZP_07451470.1| CarD family transcriptional regulator [Mobiluncus mulieris ATCC
35239]
gi|307701599|ref|ZP_07638616.1| CarD-like protein [Mobiluncus mulieris FB024-16]
gi|227842677|gb|EEJ52877.1| transcription factor CarD [Mobiluncus mulieris ATCC 35243]
gi|269935637|gb|EEZ92175.1| CarD family transcriptional regulator [Mobiluncus mulieris 28-1]
gi|304649542|gb|EFM46825.1| CarD family transcriptional regulator [Mobiluncus mulieris ATCC
35239]
gi|307613278|gb|EFN92530.1| CarD-like protein [Mobiluncus mulieris FB024-16]
Length = 160
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 85/158 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EI + + G++ E+ + + + +++P +G+R +
Sbjct: 3 FTVGETVVYPHHGAAVIEEITTRVIGGVEREYLKLRVAQADLTIQIPSENVEMVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +E +++R + + WSRR + KI +GD++ +AEVVRDL R DS+ S
Sbjct: 63 DKEGLEHVFEVLRTTKTEEPSNWSRRYKANVEKIATGDVVKVAEVVRDLSRRDSKKGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A N ++ L+S
Sbjct: 123 GEKRMLSKARQILVSELALAEKTNEEDASNRLDEVLAS 160
>gi|296131792|ref|YP_003639039.1| transcriptional regulator, CarD family [Thermincola sp. JR]
gi|296030370|gb|ADG81138.1| transcriptional regulator, CarD family [Thermincola potens JR]
Length = 158
Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 84/158 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I I+E+EV G ++V+ M + +P D+G+R++
Sbjct: 1 MFNIGDKVVYPMHGAGIIEAIEEKEVLGEVRSYYVMRLPIGDMKVMIPTSNVKDLGLRQV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ V+R L ++ K V W++R + KI SG++ +AEVVR+L R D + S
Sbjct: 61 IDEEGVQRVLNILSEKDTVMSANWNKRYRTNMEKIKSGNIFEVAEVVRNLMRRDQEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ E+A ++ E+ + E + ++++ +
Sbjct: 121 TGERKMLENARQILISELVLARGVKEEKVQSMLDEVFA 158
>gi|119718259|ref|YP_925224.1| CarD family transcriptional regulator [Nocardioides sp. JS614]
gi|119538920|gb|ABL83537.1| transcriptional regulator, CarD family [Nocardioides sp. JS614]
Length = 161
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFV-IAFDKDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I +I+ +++ G ++ V + + ++VP +G+R +
Sbjct: 3 FTVGETVVYPNHGAAVIEDIEMRKIKGEDRQYLVLRIVAQQDLVVRVPACNLDLVGVRDV 62
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++R ++R + T WSRR + K++SGD++ +AEVVRDL R + S
Sbjct: 63 VDKEGLDRVFDVLRAAHVEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLS 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A L++ L+S
Sbjct: 123 AGEKRMLAKARQILVSELALAEHTNEDKAEALLDEVLAS 161
>gi|213965110|ref|ZP_03393308.1| transcriptional regulator, CarD family protein [Corynebacterium
amycolatum SK46]
gi|213952224|gb|EEB63608.1| transcriptional regulator, CarD family protein [Corynebacterium
amycolatum SK46]
Length = 191
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG I I E+E+ G +++ V+ + + ++VP A +G+R +
Sbjct: 2 EFSIGDTVVYPHHGAAKIENIIERELNGETVQYLVLQILQSDLNIQVPAKNAELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEEGLLKVFSVLRETDVEEAGNWSRRYKANQERLGSGDINKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188
E+++ A +V E+A + + E + +E + + E+ + Q+ AA
Sbjct: 122 AGEKRMLSKARQVLVGELALADGVDEAK----VEEVFARVDATIERHRALAQEGAA 173
>gi|300780458|ref|ZP_07090314.1| CarD family transcriptional regulator [Corynebacterium genitalium
ATCC 33030]
gi|300534568|gb|EFK55627.1| CarD family transcriptional regulator [Corynebacterium genitalium
ATCC 33030]
Length = 197
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 3/166 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE +VYP HG I +I+++E+ G L+F V+ + + ++VPV A +G+R +
Sbjct: 2 DFKVGEVVVYPHHGAARIADIEQREMGGETLDFLVLNILQSDLSVRVPVKNAELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VNEDGLRKVFSVLRETDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQGRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA---INLIEVNLSSKSSK 175
E+++ A +V E+A I E +A I+ ++ +
Sbjct: 122 AGEKRMLGKARQILVGELALAEPIDEAKADDMEKEIQSIIARHVEQ 167
>gi|153008468|ref|YP_001369683.1| CarD family transcriptional regulator [Ochrobactrum anthropi ATCC
49188]
gi|151560356|gb|ABS13854.1| transcriptional regulator, CarD family [Ochrobactrum anthropi ATCC
49188]
Length = 193
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 124/176 (70%), Positives = 146/176 (82%), Gaps = 1/176 (0%)
Query: 1 MTFQQKRDAMRQG-FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
M+ QQK+ + +G F+ GE IVYPAHGVG I I+EQEVAG KLE FVI F+KDKM LKV
Sbjct: 1 MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+I+EVV
Sbjct: 61 PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
RDL R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIE NL+ +
Sbjct: 121 RDLFRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEANLAKGPKR 176
>gi|326383079|ref|ZP_08204768.1| transcription factor CarD [Gordonia neofelifaecis NRRL B-59395]
gi|326198215|gb|EGD55400.1| transcription factor CarD [Gordonia neofelifaecis NRRL B-59395]
Length = 162
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 87/160 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG + +I + + G ++E+ V+ M +++P K +G+R +
Sbjct: 3 FKVGDTVVYPHHGAARVEDIVIRTIKGEEIEYLVLKVADGDMTVQIPSSKLEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ +++R + T W+RR + K+ SGD+I +AE+VRDL R + S
Sbjct: 63 GQEGLDQVFQVLRAPHTEEPTNWARRFKANQEKLISGDIIKVAEIVRDLWRREQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A +V E++ ++ +A ++++ L++ S
Sbjct: 123 GEKRMLTRARRVLVDELSLAQHTNDEKADSMLDEILAAAS 162
>gi|302870278|ref|YP_003838915.1| transcription factor CarD [Micromonospora aurantiaca ATCC 27029]
gi|315503446|ref|YP_004082333.1| transcriptional regulator, card family [Micromonospora sp. L5]
gi|302573137|gb|ADL49339.1| transcription factor CarD [Micromonospora aurantiaca ATCC 27029]
gi|315410065|gb|ADU08182.1| transcriptional regulator, CarD family [Micromonospora sp. L5]
Length = 161
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 81/156 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I I+ + + G E+ V+ + + ++VP A +G+R++
Sbjct: 3 FSVGETVVYPHHGAALIEAIETRVIKGEPREYLVLRVAQGDLTVRVPAENAEIVGVREVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + ++R + T WSRR + K+ SG+ + +AEVVRDL R + + S
Sbjct: 63 GEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
E+++ A + +V E+A ++ EA L++ L
Sbjct: 123 GEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVL 158
>gi|295691061|ref|YP_003594754.1| CarD family transcriptional regulator [Caulobacter segnis ATCC
21756]
gi|295432964|gb|ADG12136.1| transcriptional regulator, CarD family [Caulobacter segnis ATCC
21756]
Length = 167
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 99/161 (61%), Positives = 123/161 (76%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+H+VYPAHGVG I I+ QEVAGM LE +VI FD +KM L+VP KA G+R L
Sbjct: 7 EFSVGDHVVYPAHGVGNIQAIETQEVAGMSLEVYVITFDHEKMTLRVPTKKAKTAGLRPL 66
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E V +AL ++G+ARVKRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR ++QPE+S
Sbjct: 67 AEGGTVSQALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQS 126
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
YSERQLYESAL+RM RE+AA+ I AI ++ +L +
Sbjct: 127 YSERQLYESALDRMAREVAAIERIDREAAIGILTKSLVKAA 167
>gi|68535372|ref|YP_250077.1| putative transcription factor [Corynebacterium jeikeium K411]
gi|68262971|emb|CAI36459.1| putative transcription factor [Corynebacterium jeikeium K411]
Length = 196
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 80/165 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG I I+++E G +++ V+ ++ + ++VP A +G+R +
Sbjct: 2 EFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
E+++ A +V E+A + + + L+ ++ E
Sbjct: 122 AGEKRMLAKARQILVGELALAEGVDDKKTDTLLAEMQAAIKRHRE 166
>gi|217977551|ref|YP_002361698.1| transcriptional regulator, CarD family [Methylocella silvestris
BL2]
gi|217502927|gb|ACK50336.1| transcriptional regulator, CarD family [Methylocella silvestris
BL2]
Length = 456
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 109/179 (60%), Positives = 133/179 (74%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + GF+ E+IVYPAHGVG I I+EQEVAG KLE FVI+F KDKM LKVP K +G
Sbjct: 270 SRQSGFKPNEYIVYPAHGVGQIVAIEEQEVAGFKLELFVISFVKDKMILKVPTPKVTSVG 329
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
MRKL+EA V R+L + G+AR+KRTMWSRRAQEY+AKINSGDLIAIAEVVRDL+R+DSQ
Sbjct: 330 MRKLAEADVVRRSLDTLAGRARIKRTMWSRRAQEYEAKINSGDLIAIAEVVRDLYRSDSQ 389
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187
PE+SYSERQLYE+AL+RM RE+ V ++E EA+ IE L + K+ D
Sbjct: 390 PEQSYSERQLYEAALDRMAREVVIVEKLTETEALKAIEAQLQKGPRRGGKAEEIEVDDT 448
>gi|297572193|ref|YP_003697967.1| CarD family transcripitonal regulator [Arcanobacterium haemolyticum
DSM 20595]
gi|296932540|gb|ADH93348.1| transcriptional regulator, CarD family [Arcanobacterium
haemolyticum DSM 20595]
Length = 181
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 88/176 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE +VYP HG I +I E+ + G K + + + M ++VP +G+R +
Sbjct: 2 SFKVGETVVYPHHGAAYIEDISEKMMRGEKRLYLTLRIIQGDMVIQVPADSIEQVGLRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S +ER ++R + + + WSRR + K+ SGD+ +AEVVRDL R +S S
Sbjct: 62 SNDEQLERVFAVLREENVEEPSNWSRRYKANGEKLTSGDVNKVAEVVRDLTRRNSDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188
E+++ A + E+A IS+ EA L+ L + + S S ++A
Sbjct: 122 AGEKRMLAQARGILGSEVALGRGISDEEAAELLNEILGEFTPSPDSSESAGTPESA 177
>gi|320532511|ref|ZP_08033328.1| CarD-like transcriptional regulator [Actinomyces sp. oral taxon 171
str. F0337]
gi|320135273|gb|EFW27404.1| CarD-like transcriptional regulator [Actinomyces sp. oral taxon 171
str. F0337]
Length = 160
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 83/158 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
+ GE +VYP HG I +I++++V G + + + + + + VP IG+R +
Sbjct: 3 YEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVELIGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +E+ +++R + T WSRR + KI SGD+I +AEVVRDL R D+
Sbjct: 63 DETGLEKVFEVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGLPA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E EA + ++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAQKTPEEEAESRLDEVLAS 160
>gi|170750107|ref|YP_001756367.1| CarD family transcriptional regulator [Methylobacterium
radiotolerans JCM 2831]
gi|170656629|gb|ACB25684.1| transcriptional regulator, CarD family [Methylobacterium
radiotolerans JCM 2831]
Length = 201
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 112/177 (63%), Positives = 147/177 (83%), Gaps = 1/177 (0%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
RQGF+TGE +VYPAHGVG IT I+EQE+AG KLE FV++F+KDKM L+VP KA +GMR
Sbjct: 12 RQGFKTGEAVVYPAHGVGRITAIEEQEIAGYKLELFVVSFEKDKMVLRVPTAKANSVGMR 71
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
KL+E V++AL L+ G+AR+KRTMWSRRAQEY+AKINSGDL+A+ EVVRDL R+++QPE
Sbjct: 72 KLAEPELVKKALDLLTGRARIKRTMWSRRAQEYEAKINSGDLLAVTEVVRDLFRSEAQPE 131
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187
+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+ + KS +E + +A
Sbjct: 132 QSYSERQLYEAALDRIVREISSVNRITETEALKLIEQSLAKS-PRRAKSEAEPEAEA 187
>gi|260578403|ref|ZP_05846317.1| transcription factor [Corynebacterium jeikeium ATCC 43734]
gi|258603425|gb|EEW16688.1| transcription factor [Corynebacterium jeikeium ATCC 43734]
Length = 196
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 80/165 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG I I+++E G +++ V+ ++ + ++VP A +G+R +
Sbjct: 2 EFAVGDTVVYPHHGAAVIEGIEQREFKGETVDYLVLRINQGDLSVRVPAANAEKVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
E+++ A +V E+A + + + L+ ++ E
Sbjct: 122 AGEKRMLAKARQILVGELALAEGVDDKKTDALLADMQAAIKRHRE 166
>gi|103485742|ref|YP_615303.1| CarD family transcriptional regulator [Sphingopyxis alaskensis
RB2256]
gi|98975819|gb|ABF51970.1| transcriptional regulator, CarD family [Sphingopyxis alaskensis
RB2256]
Length = 175
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 85/161 (52%), Positives = 119/161 (73%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F G+++VYP HGVG + E+++ E+AGM+LE +V+ F+K+KM L+VP KA +GMRKLS
Sbjct: 8 FEVGDYVVYPKHGVGRVIELQKSEIAGMQLELYVLRFEKEKMTLRVPTNKAEGVGMRKLS 67
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++ AL+++ K +VKRTMWSRRAQEY+AKINSGDL++IAEV RDL R D QPE+SY
Sbjct: 68 SDKTLKEALQVLTTKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSY 127
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SERQ++E+A +R+ RE+AA+ E A I L+ +
Sbjct: 128 SERQIFEAASSRLARELAAMEESDEKTAQAKILQILNEHAP 168
>gi|329946263|ref|ZP_08293857.1| CarD-like protein [Actinomyces sp. oral taxon 170 str. F0386]
gi|328527555|gb|EGF54550.1| CarD-like protein [Actinomyces sp. oral taxon 170 str. F0386]
Length = 160
Score = 134 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 84/158 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
+ GE +VYP HG I +I++++V G + + + + + + VP IG+R +
Sbjct: 3 YEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVELIGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +E+ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ S
Sbjct: 63 DETGLEKVFEVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E EA + ++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAQKTPEDEAESRLDEVLAS 160
>gi|83591419|ref|YP_425171.1| CarD family transcriptional regulator [Rhodospirillum rubrum ATCC
11170]
gi|83574333|gb|ABC20884.1| transcriptional regulator, CarD family [Rhodospirillum rubrum ATCC
11170]
Length = 165
Score = 134 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 85/164 (51%), Positives = 118/164 (71%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + + TG+ +VYP HGVG + +I++Q + G LE VI F++++M L++P+ K + G
Sbjct: 2 SNQLQYETGDFVVYPTHGVGQVLDIEKQVIGGYDLELLVIGFERERMKLRIPMPKVRESG 61
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R+LS +E AL +RGKARVKRTMWSRRAQEY+AKINSGD ++IAEVVRDLHR +Q
Sbjct: 62 LRRLSTKKVMESALVTLRGKARVKRTMWSRRAQEYEAKINSGDPVSIAEVVRDLHRNATQ 121
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
PE+SYSERQ+YE AL R+ E+AA+ I A +E LS+
Sbjct: 122 PEQSYSERQIYELALERLTCELAAIEDIDASTATQKVEKLLSAA 165
>gi|325066494|ref|ZP_08125167.1| CarD family transcriptional regulator [Actinomyces oris K20]
gi|326772504|ref|ZP_08231788.1| transcriptional regulator, CarD family [Actinomyces viscosus C505]
gi|326637136|gb|EGE38038.1| transcriptional regulator, CarD family [Actinomyces viscosus C505]
Length = 160
Score = 134 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 84/158 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
+ GE +VYP HG I +I++++V G + + + + + + VP IG+R +
Sbjct: 3 YEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVELIGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +E+ +++R + T WSRR + KI SGD+I +AEVVRDL R D+ S
Sbjct: 63 DETGLEKVFEVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E EA + ++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAQKTPEEEAESRLDEVLAS 160
>gi|319899401|ref|YP_004159498.1| transcriptional factor [Bartonella clarridgeiae 73]
gi|319403369|emb|CBI76928.1| transcriptional factor [Bartonella clarridgeiae 73]
Length = 191
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 114/187 (60%), Positives = 140/187 (74%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M + + + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP
Sbjct: 1 MASPRNTSSSAKDFLTSEYIVYPTHGVGQIMAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ KA+ IGMRKLS V RA K+++G+AR+KRTMWSRRAQEYD KINSGD+I+IAEV+R
Sbjct: 61 IAKALSIGMRKLSTVDSVNRAFKILQGRARIKRTMWSRRAQEYDTKINSGDIISIAEVIR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R+D QPE+SYSERQLY AL+RM REIA VNS++E EAINLIE +L+ KS KS
Sbjct: 121 DLFRSDLQPEQSYSERQLYAIALDRMAREIAVVNSLTETEAINLIEKHLTKKSKSEFKSE 180
Query: 181 SENQDKA 187
+ + A
Sbjct: 181 IDEGNNA 187
>gi|260881580|ref|ZP_05404736.2| transcriptional regulator, CarD family [Mitsuokella multacida DSM
20544]
gi|260848409|gb|EEX68416.1| transcriptional regulator, CarD family [Mitsuokella multacida DSM
20544]
Length = 166
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 76/160 (47%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
+ G+ +VYP HG G I+ I+ EV G ++V+ M + +P A ++G+R +
Sbjct: 4 LQIGDKVVYPMHGAGVISGIENCEVLGEGKSYYVLEMPLGNMKVMIPTDNADNVGLRDVI 63
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
V+ +++ + + W++R ++ SGD+ +A V R+L D + S
Sbjct: 64 PQQKVDEVREVLEEEPEKPKGSWNKRFHANLDRMKSGDICDVAAVARNLILQDRRRHISS 123
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
ER+L + A +V E+ + E N + LS+ +
Sbjct: 124 GERRLLDLAKQILVSELVYACDKTPKEVENWLTSVLSANA 163
>gi|209965508|ref|YP_002298423.1| CarD-like transcriptional regulator protein, putative
[Rhodospirillum centenum SW]
gi|209958974|gb|ACI99610.1| CarD-like transcriptional regulator protein, putative
[Rhodospirillum centenum SW]
Length = 166
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 81/165 (49%), Positives = 114/165 (69%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ F G+H+VYPAHGVG I I+ +A + + I F+K++M LKVPV KA G
Sbjct: 2 SENLEFAAGDHVVYPAHGVGKIIGIETHSIAEQTVTLYAIQFEKERMTLKVPVAKARAAG 61
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R+LS ++ AL+ ++G +R+KR MWSRRAQEY+AKINSGD ++IAEVVRDL+R + Q
Sbjct: 62 LRRLSSKDRIKAALETLQGPSRIKRIMWSRRAQEYEAKINSGDPVSIAEVVRDLYRGEDQ 121
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++SYSERQ+Y +AL R+ RE+A V I E +A +E LS +
Sbjct: 122 SDQSYSERQIYHAALERLARELAVVEKIDERKATERLEAVLSKAA 166
>gi|170783048|ref|YP_001711382.1| putative transcription factor regulator [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157618|emb|CAQ02816.1| putative transcription factor regulator [Clavibacter michiganensis
subsp. sepedonicus]
Length = 160
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 83/158 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG TI E+K++ + G++ + + ++ + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAATIIEVKKRVIRGVEKLYLKLDVNQGGLQIEVPAENVDMVGVRDVI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE ++R + + T WSRR + K+ SGD++ +AEVVRDL R + S
Sbjct: 63 GREGVESVFAVLRAEFTEEPTNWSRRYKANLEKLASGDVLKVAEVVRDLWRRNQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+ + + A +V E+A E A L++ L+S
Sbjct: 123 GEKSMLQKARGILVGELALAEKTDEEHASTLLDEVLAS 160
>gi|71083129|ref|YP_265848.1| hypothetical protein SAR11_0423 [Candidatus Pelagibacter ubique
HTCC1062]
gi|71062242|gb|AAZ21245.1| hypothetical protein SAR11_0423 [Candidatus Pelagibacter ubique
HTCC1062]
Length = 299
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K++ ++ ++ +++VYP HGVG ITE K+ + G+ +E +V+ F+KDK VPV K
Sbjct: 100 KKQETEKREYKVKDYVVYPKHGVGQITEFKKINIGGIDVETYVLKFEKDKANGMVPVNK- 158
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
+R L+ + V + + +++ K ++KR+MWSRRAQEY+AKI+SG + +AEVVRDL++
Sbjct: 159 -QSHLRPLATINQVNKCISILKSKPKIKRSMWSRRAQEYEAKISSGKIYELAEVVRDLNK 217
Query: 125 TDS-QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
D ++SYSERQL+E A R++ E V IS + ++ L K+ +
Sbjct: 218 GDDLMVDQSYSERQLFEKAYERILSEFQIVMGISLEDTQKKLDKALKRNLEGQAKAVAAP 277
Query: 184 QD 185
Sbjct: 278 TK 279
>gi|305680364|ref|ZP_07403172.1| CarD-like protein [Corynebacterium matruchotii ATCC 14266]
gi|305659895|gb|EFM49394.1| CarD-like protein [Corynebacterium matruchotii ATCC 14266]
Length = 196
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 77/156 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG I I+++E+ G LE+ V+ + + ++VP A +G+R +
Sbjct: 2 EFKVGDTVVYPHHGAAVIEAIEQREMGGETLEYLVLQIHQSDLVVRVPSKNAETVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + +R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEAGLRKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E+++ A +V E+A E +A L+
Sbjct: 122 AGEKRMLAKARQVLVGELALAEIKDEAKANELLAEV 157
>gi|225181295|ref|ZP_03734740.1| transcriptional regulator, CarD family [Dethiobacter alkaliphilus
AHT 1]
gi|225168075|gb|EEG76881.1| transcriptional regulator, CarD family [Dethiobacter alkaliphilus
AHT 1]
Length = 164
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 82/160 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I I+E+E+ G + ++++ M + +P+ IG+R++
Sbjct: 1 MFNIGDKVVYPMHGAGVIEAIEEKEILGARKRYYIMNIPIGDMKVMIPMDNVDQIGLREV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ H VE+ L ++R T W+RR + KI SGD+ +AEVVR+L + + S
Sbjct: 61 IDTHGVEQVLTILRDNHSKMSTNWNRRYRANMEKIKSGDIFQVAEVVRNLMLREREKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
ER++ +SA +V E+ + S + ++
Sbjct: 121 TGERKMLDSAKQILVSELVLAQNTSAQDVDEILNQFFDEG 160
>gi|328908150|gb|EGG27909.1| putative transcriptional regulator [Propionibacterium sp. P08]
Length = 161
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R +
Sbjct: 3 FNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVRDV 62
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +E+ +++R + + WSRR + K++SG+++ +AEVVRDL R + S
Sbjct: 63 VDDEGLEKVFEILRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLS 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + + +A +++ L+S
Sbjct: 123 AGEKRMLSKARQILVSELALAKRVEDDQAEEMLDEVLAS 161
>gi|184201518|ref|YP_001855725.1| hypothetical protein KRH_18720 [Kocuria rhizophila DC2201]
gi|183581748|dbj|BAG30219.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 161
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 83/159 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG TI EIK + V G + + + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAATIEEIKTRTVKGEEKMYLRLKVTQGDLMIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +++ + +++ + + + WSRR + K+ SGD++ +AEVVRDL R D S
Sbjct: 63 DEDGLKQVIAVLQAQDAEEASNWSRRYKANLEKLASGDVLKVAEVVRDLWRRDRGKGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A + E+A I E EA ++ LS+
Sbjct: 123 GEKRMLTKARQILTSELALAKKIDEEEAEKRLDDILSAA 161
>gi|49474702|ref|YP_032744.1| transcriptional factor regulator [Bartonella quintana str.
Toulouse]
gi|49240206|emb|CAF26674.1| transcriptional factor regulator [Bartonella quintana str.
Toulouse]
Length = 194
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 120/187 (64%), Positives = 144/187 (77%), Gaps = 1/187 (0%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M Q + + +GF T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP
Sbjct: 1 MASQHRTSSNAKGFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ KAI +GMRKLS VERALK++ GKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR
Sbjct: 61 IAKAISVGMRKLSAVDSVERALKILHGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R++ QPE+SYSERQLY +AL+RM REIA +NS+SE EA+NLIE++L S K E T
Sbjct: 121 DLFRSNLQPEQSYSERQLYTAALDRMAREIAVINSLSETEAVNLIEMHL-SNKPKCEFKT 179
Query: 181 SENQDKA 187
++ A
Sbjct: 180 KSDETNA 186
>gi|15603905|ref|NP_220420.1| hypothetical protein RP026 [Rickettsia prowazekii str. Madrid E]
gi|3860596|emb|CAA14497.1| unknown [Rickettsia prowazekii]
Length = 201
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 77/172 (44%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+T + + + F+ G+ IVYPAHGVG IT I+ +A +++ +VI+F +DKM LKVP
Sbjct: 28 ITQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIADTEIKVYVISFSQDKMTLKVP 87
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+R
Sbjct: 88 VNRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLR 147
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLH + ++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 148 DLH-KNVDNDRSYSERTLYESALNRLAGELAILENIDPTEAINKLVEVLREK 198
>gi|254455735|ref|ZP_05069164.1| CarD-like transcriptional regulator family protein [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082737|gb|EDZ60163.1| CarD-like transcriptional regulator family protein [Candidatus
Pelagibacter sp. HTCC7211]
Length = 279
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 112/184 (60%), Gaps = 3/184 (1%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K++ ++ ++ +H+VYP HGVG I+E K+ + G+ +E +VI F+KDK VPV K
Sbjct: 79 KKQETEKREYKIKDHVVYPKHGVGQISEFKKINIGGIDVETYVIKFEKDKANGMVPVNK- 137
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
+R L+ + V + + +++ K ++KR+MWSRRAQEY+AKI+SG + +AEVVRDL++
Sbjct: 138 -QSHLRPLATINQVNKCISILKSKPKIKRSMWSRRAQEYEAKISSGKIYELAEVVRDLNK 196
Query: 125 TDS-QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
D ++SYSERQL+E A R++ E V ++S + ++ L + +
Sbjct: 197 GDDLMVDQSYSERQLFEKAYERILSEFQIVLNMSLEDTQKKLDKALKRNLGGQTQPVASP 256
Query: 184 QDKA 187
+
Sbjct: 257 PKAS 260
>gi|188584806|ref|YP_001916351.1| transcriptional regulator, CarD family [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349493|gb|ACB83763.1| transcriptional regulator, CarD family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 161
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 85/157 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG G I ++E+EV G K ++++ M + +P + IG+R++
Sbjct: 1 MFKKGDKVVYPMHGAGVIEGVEEREVLGKKHMYYIMKIPVGDMKVMIPKERVDAIGLREI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + V++ L +++ + W++R + KI SGD+ +AEV+R+L D + S
Sbjct: 61 VDKNSVKKVLAILKAEETNVNHNWNQRYRANLEKIRSGDIYQVAEVIRNLVFLDDEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
E+++ E+A +V E+ I E +A +I L
Sbjct: 121 TGEKKMLENAKQILVSELVLAKDIEEEQAHEIINDTL 157
>gi|238061419|ref|ZP_04606128.1| CarD family transcriptional regulator [Micromonospora sp. ATCC
39149]
gi|330470463|ref|YP_004408206.1| transcriptional regulator, card family protein [Verrucosispora
maris AB-18-032]
gi|237883230|gb|EEP72058.1| CarD family transcriptional regulator [Micromonospora sp. ATCC
39149]
gi|328813434|gb|AEB47606.1| transcriptional regulator, card family protein [Verrucosispora
maris AB-18-032]
Length = 161
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 81/156 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I I+ + + G ++ V+ + + ++VP A +G+R++
Sbjct: 3 FSVGETVVYPHHGAALIEAIETRVIKGEPKQYLVLRVAQGDLTVRVPAENAEIVGVREVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + ++R + T WSRR + K+ SG+ + +AEVVRDL R + + S
Sbjct: 63 GEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
E+++ A + +V E+A ++ EA L++ L
Sbjct: 123 GEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVL 158
>gi|260887702|ref|ZP_05898965.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC
35185]
gi|260862582|gb|EEX77082.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC
35185]
Length = 175
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 74/159 (46%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
+ G+ +VYP HG G I+ I++ EV G ++V+ M + +P ++G+R +
Sbjct: 14 LQVGDTVVYPMHGAGVISGIEDCEVLGEGKSYYVLQMPLGNMKVMIPTDNVDNMGLRDVI 73
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE +++ W++R ++ SGD+ +A V R+L D + S
Sbjct: 74 PETQVEEVKDILQMAPERATGSWNKRFHANLERMKSGDICDVAAVARNLVLQDRLRKISS 133
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
ER+L + A +V E+ S S E + ++ L+
Sbjct: 134 GERRLLDLARQIIVSELVYACSKSPEEVKSWMDGILAEN 172
>gi|297627026|ref|YP_003688789.1| CarD family transcriptional regulator [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296922791|emb|CBL57369.1| transcriptional regulator CarD [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 161
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 1/159 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I + + +++ G + V+ + + ++VP +G+R +
Sbjct: 3 FTVGETVVYPNHGAAVIEDTETRKIKGEDTLYLVLRILGQTDLVVRVPACNLDLVGVRDV 62
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +E+ ++R + T WSRR + K++SGD++ ++EVVRDL R + + S
Sbjct: 63 VDEEGLEKVFSVLRAPHTEEPTNWSRRYKANLEKLHSGDVMKVSEVVRDLWRREKERGLS 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + E A +++ L+S
Sbjct: 123 AGEKRMLAKARQILVSELALAEKVEEERAEVMLDEVLAS 161
>gi|86137857|ref|ZP_01056433.1| transcriptional regulator, CarD family protein [Roseobacter sp.
MED193]
gi|85825449|gb|EAQ45648.1| transcriptional regulator, CarD family protein [Roseobacter sp.
MED193]
Length = 170
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 103/172 (59%), Positives = 126/172 (73%), Gaps = 5/172 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT +K FR E++VYPAHGVG I ++EQEVAG LE FVI F+KDKM L+VP
Sbjct: 1 MTKSKK-----LAFRPDEYVVYPAHGVGQIISVEEQEVAGFALELFVITFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KAI++GMR LS + +A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVR
Sbjct: 56 TNKAIEVGMRSLSSPDVIAQAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLHRTD Q E+SYSERQLYE+AL R+ RE+AAV E A + L+S+
Sbjct: 116 DLHRTDDQREQSYSERQLYEAALERLTREVAAVAGGDEILAAKQVGDVLTSR 167
>gi|282853418|ref|ZP_06262755.1| CarD-like protein [Propionibacterium acnes J139]
gi|282582871|gb|EFB88251.1| CarD-like protein [Propionibacterium acnes J139]
Length = 161
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R +
Sbjct: 3 FNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRVLGQNDLVVRVPASNLDLVGVRDV 62
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +E +++R + + WSRR + K++SG+++ +AEVVRDL R + S
Sbjct: 63 VDDEGLENVFEVLRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLS 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +++ A +++ L+S
Sbjct: 123 AGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLAS 161
>gi|50841843|ref|YP_055070.1| putative transcriptional regulator [Propionibacterium acnes
KPA171202]
gi|289424334|ref|ZP_06426117.1| CarD-like protein [Propionibacterium acnes SK187]
gi|289428813|ref|ZP_06430493.1| CarD-like protein [Propionibacterium acnes J165]
gi|295129919|ref|YP_003580582.1| CarD-like protein [Propionibacterium acnes SK137]
gi|50839445|gb|AAT82112.1| putative transcriptional regulator [Propionibacterium acnes
KPA171202]
gi|289155031|gb|EFD03713.1| CarD-like protein [Propionibacterium acnes SK187]
gi|289157814|gb|EFD06037.1| CarD-like protein [Propionibacterium acnes J165]
gi|291375973|gb|ADD99827.1| CarD-like protein [Propionibacterium acnes SK137]
gi|313765551|gb|EFS36915.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL013PA1]
gi|313772900|gb|EFS38866.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL074PA1]
gi|313793078|gb|EFS41145.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL110PA1]
gi|313802474|gb|EFS43696.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL110PA2]
gi|313806489|gb|EFS44996.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL087PA2]
gi|313811040|gb|EFS48754.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL083PA1]
gi|313814459|gb|EFS52173.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL025PA1]
gi|313815048|gb|EFS52762.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL059PA1]
gi|313817358|gb|EFS55072.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL046PA2]
gi|313821898|gb|EFS59612.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL036PA1]
gi|313824206|gb|EFS61920.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL036PA2]
gi|313826574|gb|EFS64288.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL063PA1]
gi|313828758|gb|EFS66472.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL063PA2]
gi|313831803|gb|EFS69517.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL007PA1]
gi|313834653|gb|EFS72367.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL056PA1]
gi|313840116|gb|EFS77830.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL086PA1]
gi|314915809|gb|EFS79640.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL005PA4]
gi|314917081|gb|EFS80912.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL050PA1]
gi|314921357|gb|EFS85188.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL050PA3]
gi|314922287|gb|EFS86118.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL001PA1]
gi|314926712|gb|EFS90543.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL036PA3]
gi|314931320|gb|EFS95151.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL067PA1]
gi|314954856|gb|EFS99262.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL027PA1]
gi|314958792|gb|EFT02894.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL002PA1]
gi|314961081|gb|EFT05182.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL002PA2]
gi|314964491|gb|EFT08591.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL082PA1]
gi|314965395|gb|EFT09494.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL082PA2]
gi|314969590|gb|EFT13688.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL037PA1]
gi|314974656|gb|EFT18751.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL053PA1]
gi|314977148|gb|EFT21243.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL045PA1]
gi|314980436|gb|EFT24530.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL072PA2]
gi|314982506|gb|EFT26599.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL110PA3]
gi|314985754|gb|EFT29846.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL005PA1]
gi|314987277|gb|EFT31368.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL005PA2]
gi|314989179|gb|EFT33270.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL005PA3]
gi|315078494|gb|EFT50525.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL053PA2]
gi|315082043|gb|EFT54019.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL078PA1]
gi|315082817|gb|EFT54793.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL027PA2]
gi|315086173|gb|EFT58149.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL002PA3]
gi|315087758|gb|EFT59734.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL072PA1]
gi|315091050|gb|EFT63026.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL110PA4]
gi|315094138|gb|EFT66114.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL060PA1]
gi|315097488|gb|EFT69464.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL038PA1]
gi|315099939|gb|EFT71915.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL059PA2]
gi|315101748|gb|EFT73724.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL046PA1]
gi|315104787|gb|EFT76763.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL050PA2]
gi|315106406|gb|EFT78382.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL030PA1]
gi|315110296|gb|EFT82272.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL030PA2]
gi|327329340|gb|EGE71100.1| transcriptional regulator, CarD family [Propionibacterium acnes
HL103PA1]
gi|327331426|gb|EGE73165.1| transcriptional regulator, CarD family [Propionibacterium acnes
HL096PA2]
gi|327333413|gb|EGE75133.1| transcriptional regulator, CarD family [Propionibacterium acnes
HL096PA3]
gi|327334936|gb|EGE76647.1| transcriptional regulator, CarD family [Propionibacterium acnes
HL097PA1]
gi|327445569|gb|EGE92223.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL013PA2]
gi|327447189|gb|EGE93843.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL043PA1]
gi|327449777|gb|EGE96431.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL043PA2]
gi|327454626|gb|EGF01281.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL087PA3]
gi|327456698|gb|EGF03353.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL083PA2]
gi|327457026|gb|EGF03681.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL092PA1]
gi|328755681|gb|EGF69297.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL087PA1]
gi|328756461|gb|EGF70077.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL025PA2]
gi|328758809|gb|EGF72425.1| CarD-like transcriptional regulator [Propionibacterium acnes
HL020PA1]
gi|328761841|gb|EGF75353.1| transcriptional regulator, CarD family [Propionibacterium acnes
HL099PA1]
gi|332674759|gb|AEE71575.1| putative transcriptional regulator [Propionibacterium acnes 266]
Length = 161
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I +I+ + + G + + V+ ++ + ++VP +G+R +
Sbjct: 3 FNVGETVVYPNHGAAVIEDIETRTIKGEEKLYLVLRILGQNDLVVRVPASNLDLVGVRDV 62
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +E +++R + + WSRR + K++SG+++ +AEVVRDL R + S
Sbjct: 63 VDDEGLENVFEVLRKTNVEEPSNWSRRYKANLEKLHSGNVLKVAEVVRDLWRRERDRGLS 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +++ A +++ L+S
Sbjct: 123 AGEKRMLSKARQILVSELALAKKVADDRAEEMLDEVLAS 161
>gi|148273673|ref|YP_001223234.1| CarD family transcriptional regulator [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831603|emb|CAN02571.1| putative transcriptional regulator, CarD family [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 160
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 82/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG TI E+K++ + G + + + ++ + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAATIIEVKKRVIRGEEKLYLKLDVNQGGLQIEVPAENVDMVGVRDVI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE ++R + + T WSRR + K+ SGD++ +AEVVRDL R + S
Sbjct: 63 GREGVESVFAVLRAEFTEEPTNWSRRYKANLEKLASGDVLKVAEVVRDLWRRNQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+ + + A +V E+A E A L++ L+S
Sbjct: 123 GEKSMLQKARGILVGELALAEKTDEEHASTLLDEVLAS 160
>gi|116751073|ref|YP_847760.1| CarD family transcriptional regulator [Syntrophobacter fumaroxidans
MPOB]
gi|116700137|gb|ABK19325.1| transcriptional regulator, CarD family [Syntrophobacter
fumaroxidans MPOB]
Length = 159
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ VYPAHGVG I ++ + + G K +F+++ + M + +PV A +G+R L
Sbjct: 1 MFKIGDLAVYPAHGVGKIESVETKSIGGKKQDFYIMRILDNDMKIMIPVPNAHTVGLRGL 60
Query: 73 SEAHFVERALKLVRGKARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + +++ + W+RR +EY KI +G + +AEV+RDL E
Sbjct: 61 IGLEDISKVYDILQKREVSVNGGTWNRRYREYMEKIKTGSIYELAEVLRDLTVLKGDKEL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
S+ ER++ ++A +++E++ V ISE E I L
Sbjct: 121 SFGERKMLDTARTLLLKELSIVQDISEEEVDKGIRDMLQ 159
>gi|332800107|ref|YP_004461606.1| CarD family transcriptional regulator [Tepidanaerobacter sp. Re1]
gi|332697842|gb|AEE92299.1| transcriptional regulator, CarD family [Tepidanaerobacter sp. Re1]
Length = 158
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I I+E+E+ G K +++++ M + +P+ DIG+R++
Sbjct: 1 MFNIGDKVVYPMHGAGVIEAIEEKEILGEKQKYYIMRMPIGDMKVMIPLNNIEDIGVRQV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++RG+ + W+RR + KI SG++ +AEVVR+L D + S
Sbjct: 61 VGDEEISEVFNILRGEKSKMSSNWNRRYRANMDKIRSGNIFQVAEVVRNLSLRDKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
ER++ E+A + +V EI +I E EA+ +IE
Sbjct: 121 TGERKMLENAKHILVSEIVLSKNIQEDEALQMIENAF 157
>gi|227547934|ref|ZP_03977983.1| CarD family transcriptional regulator [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079945|gb|EEI17908.1| CarD family transcriptional regulator [Corynebacterium
lipophiloflavum DSM 44291]
Length = 204
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE +VYP HG I +I+E+E+ G L+F V+ + + ++VPV + +G+R +
Sbjct: 2 EFKVGEVVVYPHHGAARIADIEEREMGGETLDFLVLKILQSDLEVRVPVKNSELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VNEAGLRKVFSVLRETDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQGKGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL---IEVNLSSK 172
E+++ A +V E+A + E +A + I + +
Sbjct: 122 AGEKRMLGKARQILVGELALATPVDEAKAEEMESGINEIIQRQ 164
>gi|91762444|ref|ZP_01264409.1| hypothetical protein PU1002_04226 [Candidatus Pelagibacter ubique
HTCC1002]
gi|91718246|gb|EAS84896.1| hypothetical protein PU1002_04226 [Candidatus Pelagibacter ubique
HTCC1002]
Length = 304
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K++ ++ ++ +++VYP HGVG ITE K+ + G+ +E +V+ F+KDK VPV K
Sbjct: 105 KKQETEKREYKVKDYVVYPKHGVGQITEFKKINIGGIDVETYVLKFEKDKANGMVPVNK- 163
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
+R L+ + V + + +++ K ++KR+MWSRRAQEY+AKI+SG + +AEVVRDL++
Sbjct: 164 -QSHLRPLATINQVNKCISILKSKPKIKRSMWSRRAQEYEAKISSGKIYELAEVVRDLNK 222
Query: 125 TDS-QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
D ++SYSERQL+E A R++ E V +S + ++ L K+ +
Sbjct: 223 GDDLMVDQSYSERQLFEKAYERILSEFQIVMGVSLEDTQKKLDKALKRNLEGQAKAVAAP 282
Query: 184 QD 185
Sbjct: 283 TK 284
>gi|239916921|ref|YP_002956479.1| transcriptional regulator, CarD family [Micrococcus luteus NCTC
2665]
gi|289706880|ref|ZP_06503221.1| CarD-like transcriptional regulator [Micrococcus luteus SK58]
gi|239838128|gb|ACS29925.1| transcriptional regulator, CarD family [Micrococcus luteus NCTC
2665]
gi|289556430|gb|EFD49780.1| CarD-like transcriptional regulator [Micrococcus luteus SK58]
Length = 160
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK + + G + + + + + ++VP +G+R +
Sbjct: 3 FEVGETVVYPHHGAARIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+A +E ++++R + + T WSRR + K+ SGD+ +AEVVRDL R D S
Sbjct: 63 DAEGLEHVMEVLRAEHVEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ A +V E+A ++E EA ++ L
Sbjct: 123 GEKRMLSKARQVLVSELALAKKVTEEEAEGRLDKVLE 159
>gi|145596771|ref|YP_001161068.1| transcription factor CarD [Salinispora tropica CNB-440]
gi|159040183|ref|YP_001539436.1| CarD family transcriptional regulator [Salinispora arenicola
CNS-205]
gi|145306108|gb|ABP56690.1| transcriptional regulator, CarD family [Salinispora tropica
CNB-440]
gi|157919018|gb|ABW00446.1| transcriptional regulator, CarD family [Salinispora arenicola
CNS-205]
Length = 161
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 82/156 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I I+ + + G + ++ V+ + + ++VP A +G+R++
Sbjct: 3 FSVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLRVAQGDLTVRVPAENAEIVGVREVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + ++R + T WSRR + K+ SG+ + +AEVVRDL R + + S
Sbjct: 63 GEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
E+++ A + +V E+A ++ EA L++ L
Sbjct: 123 GEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVL 158
>gi|310815308|ref|YP_003963272.1| transcriptional regulator, CarD family protein [Ketogulonicigenium
vulgare Y25]
gi|308754043|gb|ADO41972.1| transcriptional regulator, CarD family protein [Ketogulonicigenium
vulgare Y25]
Length = 169
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 105/169 (62%), Positives = 123/169 (72%), Gaps = 5/169 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M+ +K F ++IVYPAHGVG I I+EQEVAG KLE FVIAF+KDKM L+VP
Sbjct: 1 MSKSKK-----PEFHPNDYIVYPAHGVGQILSIEEQEVAGFKLELFVIAFEKDKMTLRVP 55
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KAI+IGMR L+ + V+ ALK ++GKA+VK+ MWSRRAQEYD KINSGDLIAIAEVVR
Sbjct: 56 TNKAIEIGMRALASSDVVDHALKTLKGKAKVKKAMWSRRAQEYDEKINSGDLIAIAEVVR 115
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
DLHR D Q E+SYSERQLYE AL R+ RE+AAVN E I L
Sbjct: 116 DLHRADDQREQSYSERQLYERALERLTRELAAVNGKDEVSMAREIGTLL 164
>gi|294786789|ref|ZP_06752043.1| transcriptional regulator, CarD family [Parascardovia denticolens
F0305]
gi|294485622|gb|EFG33256.1| transcriptional regulator, CarD family [Parascardovia denticolens
F0305]
Length = 230
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG I EI E+ + G+ + + + + VP +G+R+
Sbjct: 2 EYKVGDTVVYPRHGAARIEEITERTLRGVTRIYLRLTVLSSDGLEISVPADAVDKVGVRE 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE- 130
+ V + +++R ++T WSRR + KI +GD+ IAEVVRDL + D
Sbjct: 62 VVNGVAVAKVFEILRTPIVEEKTNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDDDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A N + EIA I + EA L++VNL EK ++ ++AA
Sbjct: 122 LSAGEKRMLSKARNILTSEIALSEKIDDEEAQRLLDVNLGYQDPEPGDEKHHAQAPEEAA 181
>gi|148262071|ref|YP_001236198.1| CarD family transcriptional regulator [Acidiphilium cryptum JF-5]
gi|326405583|ref|YP_004285665.1| CarD family transcriptional regulator [Acidiphilium multivorum
AIU301]
gi|146403752|gb|ABQ32279.1| transcriptional regulator, CarD family [Acidiphilium cryptum JF-5]
gi|325052445|dbj|BAJ82783.1| CarD family transcriptional regulator [Acidiphilium multivorum
AIU301]
Length = 266
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 85/166 (51%), Positives = 116/166 (69%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
Q+ A + F+ G+H+VYP HGVG + I +E+AG KLE I FD+++M L+VPV KA
Sbjct: 99 QRAIAKAETFKPGDHVVYPTHGVGKVERIAAEEIAGQKLELIHITFDENRMTLRVPVNKA 158
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
G+RKLS + L ++G+ARVKRTMWSRRAQEY+AKINSGD +AIAEVVRDLHR
Sbjct: 159 RTAGLRKLSSRKQFDEVLATLKGRARVKRTMWSRRAQEYEAKINSGDPMAIAEVVRDLHR 218
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
QP++S+SERQ++E AL+R+ E A+ + + AI+ + L
Sbjct: 219 NAGQPDQSFSERQIFEQALDRLAAEYGALEGLDKQGAIDKLLDFLK 264
>gi|326332061|ref|ZP_08198346.1| transcriptional regulator, CarD family [Nocardioidaceae bacterium
Broad-1]
gi|325950199|gb|EGD42254.1| transcriptional regulator, CarD family [Nocardioidaceae bacterium
Broad-1]
Length = 161
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFV-IAFDKDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG I +I+ + + G + ++ V + + ++VP +G+R +
Sbjct: 3 FTVGETVVYPNHGAAVIEDIEMRTIKGEERQYLVLRIIAQQDLVVRVPANNLELVGVRDV 62
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++R +++R + + T WSRR + K++SGD++ +AEVVRDL R + S
Sbjct: 63 VDKDGLDRVFEVLRAEHVEEPTNWSRRYKANLEKLHSGDVMKVAEVVRDLWRRERDRGLS 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A +E +A L++ L+S
Sbjct: 123 AGEKRMLAKARQILVSELALCEHTNEDKAEVLLDEVLAS 161
>gi|300934651|ref|ZP_07149907.1| putative transcription factor [Corynebacterium resistens DSM 45100]
Length = 199
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 80/155 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG I I+++E G K+++ V+ ++ + ++VP A +G+R +
Sbjct: 2 EFKVGDTVVYPHHGAAVIEGIEQREFKGEKVDYLVLRINQGDLSVRVPAANAEKVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEEGLRKVFSVLRETDVEEAGNWSRRYKANQERLTSGDVNKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
E+++ A +V E+A + + + L+E
Sbjct: 122 AGEKRMLAKARQILVGELALAEGVDDKKTDALLEE 156
>gi|45656119|ref|YP_000205.1| CarD transcriptional regulator [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45599352|gb|AAS68842.1| transcriptional regulator (CarD family) [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 197
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 1/181 (0%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+K+++ + G+++VYP HGVG I EI ++ + G K + +V+ KM + +PV
Sbjct: 18 AAKKKNSEI-EHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVD 76
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
KA + +R + + +++ + L++ W R Q KI SG + + EV R+L
Sbjct: 77 KAEQVRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNL 136
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182
R S E S ER+LYESA N + E+A +++ EA NL+ L+S S +EK E
Sbjct: 137 FRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLSPSEKKAEE 196
Query: 183 N 183
Sbjct: 197 E 197
>gi|323138996|ref|ZP_08074056.1| transcriptional regulator, CarD family [Methylocystis sp. ATCC
49242]
gi|322395750|gb|EFX98291.1| transcriptional regulator, CarD family [Methylocystis sp. ATCC
49242]
Length = 485
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 103/169 (60%), Positives = 131/169 (77%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ GF+ E IVYPAHGVG I ++ QEVAG LE FV++F KDKM LKVP K ++GM
Sbjct: 299 QKHGFKQSEFIVYPAHGVGQIIGVEIQEVAGFSLELFVVSFIKDKMILKVPTSKVANVGM 358
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RKL+E + V++AL + G+AR+KRTMWSRRAQEY+AKINSGDL+ IAEVVRDL+R+D+QP
Sbjct: 359 RKLAEGNVVDKALATLSGRARIKRTMWSRRAQEYEAKINSGDLVTIAEVVRDLYRSDTQP 418
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
E+SYSERQLYE+AL+RM REIAAV + + EA+ LIE L + +K
Sbjct: 419 EQSYSERQLYEAALDRMAREIAAVRKLIDSEALKLIESFLQKGPRRGQK 467
>gi|163869173|ref|YP_001610425.1| transcriptional factor [Bartonella tribocorum CIP 105476]
gi|161018872|emb|CAK02430.1| transcriptional factor [Bartonella tribocorum CIP 105476]
Length = 194
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 119/188 (63%), Positives = 144/188 (76%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M Q + + F T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP
Sbjct: 1 MASQHGTSSKTKEFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ KA+ +GMRKLS VERALK++RGKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR
Sbjct: 61 IAKALSVGMRKLSAGDSVERALKVLRGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R++ QPE+SYSERQLY +AL RM REIA +NS+SE EAINLIE++LS+K + K+
Sbjct: 121 DLFRSNLQPEQSYSERQLYTAALERMAREIAVINSLSETEAINLIEMHLSNKPKREFKTE 180
Query: 181 SENQDKAA 188
E + +
Sbjct: 181 REETVENS 188
>gi|227834038|ref|YP_002835745.1| putative transcription factor [Corynebacterium aurimucosum ATCC
700975]
gi|262183476|ref|ZP_06042897.1| putative transcription factor [Corynebacterium aurimucosum ATCC
700975]
gi|227455054|gb|ACP33807.1| putative transcription factor [Corynebacterium aurimucosum ATCC
700975]
Length = 194
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 82/156 (52%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE +VYP HG IT I+ +E+ G +LE+ V+ ++ + ++VP +G+R +
Sbjct: 2 EFKVGEVVVYPHHGAAKITAIETREMGGEELEYLVLQINQSDLVVRVPSKNVEMVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGKEGLEKVFSVLREVDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E+++ A +V E++ + E +A ++E
Sbjct: 122 AGEKRMLAKARQILVGELSLAKPVDEKKADTMMEEI 157
>gi|152977078|ref|YP_001376595.1| CarD family transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025830|gb|ABS23600.1| transcriptional regulator, CarD family [Bacillus cytotoxicus NVH
391-98]
Length = 159
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 85/158 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G I I+++EV G ++ VI M + +P+ K D G+R +
Sbjct: 1 MFQIGDKIVYPMHGAGIIEAIEDKEVLGKTRQYCVIHMVISDMQVMIPMDKVQDSGIRYV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + AL V A K W +R K+ SGD + AEVVRDL + + +
Sbjct: 61 VDQTTLNHALVDVHNGAPDKSLSWKQRYTLNMEKMKSGDFVDGAEVVRDLLHRNKERTLN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A ++ E+A V ++SE +A + ++ ++
Sbjct: 121 ASEKQMLDNARRILISEVALVQNVSENQATDFLQNTIN 158
>gi|254461053|ref|ZP_05074469.1| transcriptional regulator, CarD family [Rhodobacterales bacterium
HTCC2083]
gi|206677642|gb|EDZ42129.1| transcriptional regulator, CarD family [Rhodobacteraceae bacterium
HTCC2083]
Length = 172
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 103/165 (62%), Positives = 121/165 (73%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ FR E +VYPAHGVG + ++EQEVA +KLE +VIAF+KDKM L+VP KAIDI
Sbjct: 3 KSKNLDFRVNEFVVYPAHGVGKVVSVEEQEVADVKLELYVIAFEKDKMTLRVPTHKAIDI 62
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
GMR LS V A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD
Sbjct: 63 GMRSLSTGDEVAHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDD 122
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
Q E+SYSERQLYE+AL R+ REI AV E A I L S+
Sbjct: 123 QREQSYSERQLYEAALERLTREIGAVQGGDEDAAARQITDVLMSR 167
>gi|49476179|ref|YP_034220.1| transcriptional factor regulator [Bartonella henselae str.
Houston-1]
gi|49238987|emb|CAF28287.1| Transcriptional factor regulator [Bartonella henselae str.
Houston-1]
Length = 194
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 120/183 (65%), Positives = 141/183 (77%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M Q + +GF T E+IVYP HGVG I I++QEVAG KL+ FVI F KDKM +KVP
Sbjct: 1 MASQHGTSSNAKGFSTSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHFAKDKMDVKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ KAI +GMRKLS VERALK++ GKARVKRTMWSRRAQEYDAKINSGDLI IAEVVR
Sbjct: 61 IAKAISVGMRKLSAVDSVERALKILHGKARVKRTMWSRRAQEYDAKINSGDLICIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R+D QPE+SYSERQLY +AL RM REIA +NS+SE EAINLIE++LS K + K+
Sbjct: 121 DLFRSDLQPEQSYSERQLYIAALERMAREIAVINSLSETEAINLIEMHLSQKPKRQFKTK 180
Query: 181 SEN 183
+
Sbjct: 181 RDE 183
>gi|255325865|ref|ZP_05366957.1| transcriptional regulator, CarD family [Corynebacterium
tuberculostearicum SK141]
gi|311740175|ref|ZP_07714007.1| CarD family transcriptional regulator [Corynebacterium
pseudogenitalium ATCC 33035]
gi|255297077|gb|EET76402.1| transcriptional regulator, CarD family [Corynebacterium
tuberculostearicum SK141]
gi|311304730|gb|EFQ80801.1| CarD family transcriptional regulator [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 194
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 85/156 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ GE +VYP HG I +I+ +E+ G LE+ V+ ++ + ++VP+ A ++G+R +
Sbjct: 2 EYKVGEVVVYPHHGAAVIEDIETREMGGETLEYLVLHINQSDLVVRVPIKNADNVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E+ ++R + + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGKEGLEKVFSVLRDEDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E+++ A +V E+A + E +A ++E
Sbjct: 122 AGEKRMLGKARTILVGELALAKPVDEKKADTMMEEI 157
>gi|329848406|ref|ZP_08263434.1| carD-like/TRCF domain protein [Asticcacaulis biprosthecum C19]
gi|328843469|gb|EGF93038.1| carD-like/TRCF domain protein [Asticcacaulis biprosthecum C19]
Length = 172
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 92/161 (57%), Positives = 122/161 (75%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYPAHGVGT+ ++ QEVAG LE FV+ FD +KM L+VP KA G+R L
Sbjct: 12 DFSVGDKVVYPAHGVGTVAAVETQEVAGYALEVFVVTFDHEKMTLRVPTKKAKTAGLRHL 71
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + +AL ++G+AR+KRTMWSRRAQEY+AKINSG L+++AEVVRDL+R+DSQPE+S
Sbjct: 72 AAEAVMSQALVTLKGRARIKRTMWSRRAQEYEAKINSGCLVSLAEVVRDLYRSDSQPEQS 131
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
YSERQLYESAL+RM RE+AA+ I A+ L+ NL+ +
Sbjct: 132 YSERQLYESALDRMAREVAAIEKIDRDAAVALLNKNLTKAA 172
>gi|311114871|ref|YP_003986092.1| CarD family transcriptional regulator [Gardnerella vaginalis ATCC
14019]
gi|310946365|gb|ADP39069.1| CarD family transcriptional regulator [Gardnerella vaginalis ATCC
14019]
Length = 235
Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R
Sbjct: 39 GYQVGDMVVYPRHGAARVEEISERTVKGITRQYLRLVVLSSDGLEINVPVDNVKKVGVRD 98
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 99 IVGAKEVAKVFEILRTPILEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDVDEHG 158
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + ++ EIA I E +A L+ VNL + E+ ++ ++AA
Sbjct: 159 LSAGEKRMLARARSILISEIALSEKIDEEQAERLLNVNLGYADPLPGDEQHHTQAPEEAA 218
>gi|227505965|ref|ZP_03936014.1| CarD family transcriptional regulator [Corynebacterium striatum
ATCC 6940]
gi|227197487|gb|EEI77535.1| CarD family transcriptional regulator [Corynebacterium striatum
ATCC 6940]
Length = 195
Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 82/156 (52%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE +VYP HG I +I+ +E+ G LE+ V+ ++ + ++VP +G+R +
Sbjct: 2 EFKVGEVVVYPHHGAARIADIEHREMGGETLEYLVLQINQSDLVVRVPSKNVELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGKEGLEKVFSVLREIDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E+++ A +V E+A + + E +A ++E
Sbjct: 122 AGEKRMLAKARQILVGELALASPVDEKKADTMLEEI 157
>gi|51473313|ref|YP_067070.1| hypothetical protein RT0102 [Rickettsia typhi str. Wilmington]
gi|51459625|gb|AAU03588.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
Length = 177
Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 78/172 (45%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+T + + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVP
Sbjct: 4 ITQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGNEIKVYVISFSQDKMTLKVP 63
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+R
Sbjct: 64 VSRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLR 123
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLH + ++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 124 DLH-KNVDNDRSYSERTLYESALNRLAGELAILENIDPTEAINKLVEVLREK 174
>gi|114570846|ref|YP_757526.1| CarD family transcriptional regulator [Maricaulis maris MCS10]
gi|114341308|gb|ABI66588.1| transcriptional regulator, CarD family [Maricaulis maris MCS10]
Length = 169
Score = 131 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 96/161 (59%), Positives = 122/161 (75%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ F+ G+ IVYPAHGVG +T +++ VAG +E +V+ F++DKM L+VP K GMR
Sbjct: 6 KSFKKGDFIVYPAHGVGRVTGVEKDSVAGFDIEVYVVTFEQDKMTLRVPTAKTEASGMRP 65
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
LS V+ ALK ++GKA+VKRTMWSRRAQEY+AKINSGDLI IAEVVRDLHR + QPE+
Sbjct: 66 LSSDKIVKDALKTLKGKAKVKRTMWSRRAQEYEAKINSGDLIQIAEVVRDLHRAEDQPEQ 125
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
SYSERQLYESAL+RMVRE+AAV I A ++ +L+ K
Sbjct: 126 SYSERQLYESALDRMVRELAAVEEIEHEAAREMLSTSLAKK 166
>gi|296118942|ref|ZP_06837515.1| transcriptional regulator, CarD family [Corynebacterium
ammoniagenes DSM 20306]
gi|295968040|gb|EFG81292.1| transcriptional regulator, CarD family [Corynebacterium
ammoniagenes DSM 20306]
Length = 195
Score = 131 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 80/156 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE +VYP HG I I+ +E+ G LE+ V+ ++ + ++VP +G+R +
Sbjct: 2 EFKVGEVVVYPHHGAAKIEAIEHREMGGEMLEYLVLQINQSDLVVRVPSKNVEQVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGKEGLEKVFSVLRETDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E+++ A +V E+A + E +A +++
Sbjct: 122 AGEKRMLAKARQILVGELALAQPVDEKKADTMMDEI 157
>gi|158522831|ref|YP_001530701.1| CarD family transcriptional regulator [Desulfococcus oleovorans
Hxd3]
gi|158511657|gb|ABW68624.1| transcriptional regulator, CarD family [Desulfococcus oleovorans
Hxd3]
Length = 188
Score = 131 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
++ G+ +VYPAHGVG I I+ + + + +F+++ + M + +P +G+R +
Sbjct: 20 YQPGDLVVYPAHGVGRIETIESRNIGDTRQDFYIMKILETNMVIMIPTQNLTAVGIRNVI 79
Query: 74 EAHFVERALKLVRGKARV---KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
V + ++R + W+RR +EY KI +G L +AEV RDL +
Sbjct: 80 CKKEVSKIYNIIRSQEECGAGDNQTWNRRYKEYMDKIKTGSLYEVAEVFRDLFLLKMTKD 139
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+ ER+L ++A +V+E++ E I+ IE
Sbjct: 140 LSFGERKLLDTAQGLLVKELSIAKGAEEKTVISEIESFFPKMPP 183
>gi|315498116|ref|YP_004086920.1| transcriptional regulator, card family [Asticcacaulis excentricus
CB 48]
gi|315416128|gb|ADU12769.1| transcriptional regulator, CarD family [Asticcacaulis excentricus
CB 48]
Length = 169
Score = 131 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 97/173 (56%), Positives = 128/173 (73%), Gaps = 4/173 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT A F+TG+ +VYPAHGVGT+ ++ QEVAG +LE +V+ FD +KM L+VP
Sbjct: 1 MTT----VAAELEFKTGDKVVYPAHGVGTVAAVESQEVAGYQLEVYVVTFDHEKMTLRVP 56
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA G+R L+ A + +AL ++G+ARVKRTMWSRRAQEY+AKINSGDL++IAEVVR
Sbjct: 57 TKKAKTAGLRHLAPAAVMSQALVTLKGRARVKRTMWSRRAQEYEAKINSGDLVSIAEVVR 116
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
DLHR ++QPE+SYSERQLYESAL+RM RE+AA+ I A+ L+ +L +
Sbjct: 117 DLHRAENQPEQSYSERQLYESALDRMAREVAAIEKIDRDAAVALLNKSLIKAA 169
>gi|298530964|ref|ZP_07018365.1| transcriptional regulator, CarD family [Desulfonatronospira
thiodismutans ASO3-1]
gi|298508987|gb|EFI32892.1| transcriptional regulator, CarD family [Desulfonatronospira
thiodismutans ASO3-1]
Length = 177
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F GE +VYPA GVG + +I+EQ++ G K +++ + + L VPV A ++G+R +
Sbjct: 1 MFSVGELVVYPAQGVGRVEKIEEQDLGGAKAVLYIVRILSNNVTLMVPVNNADNVGLRPV 60
Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + L + ++ W+RR +EY K+ S DL +A V+++L
Sbjct: 61 SGKGQGQEILSFLEDRSDFTGYSGQNWNRRYREYSDKLKSKDLQDVAYVLKELFLISRDK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQD 185
E S+ ER+L E A+ + E++ SI + EA + +E + S + + +D
Sbjct: 121 ELSFGERRLMEQAMGLISMELSYALSIDQEEAKSRVEALFADILSPEVQEHDDQED 176
>gi|330838625|ref|YP_004413205.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC
35185]
gi|329746389|gb|AEB99745.1| transcriptional regulator, CarD family [Selenomonas sputigena ATCC
35185]
Length = 163
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 74/160 (46%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +VYP HG G I+ I++ EV G ++V+ M + +P ++G+R +
Sbjct: 1 MLQVGDTVVYPMHGAGVISGIEDCEVLGEGKSYYVLQMPLGNMKVMIPTDNVDNMGLRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
VE +++ W++R ++ SGD+ +A V R+L D + S
Sbjct: 61 IPETQVEEVKDILQMAPERATGSWNKRFHANLERMKSGDICDVAAVARNLVLQDRLRKIS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
ER+L + A +V E+ S S E + ++ L+
Sbjct: 121 SGERRLLDLARQIIVSELVYACSKSPEEVKSWMDGILAEN 160
>gi|114769349|ref|ZP_01446975.1| transcriptional regulator, CarD family protein [alpha
proteobacterium HTCC2255]
gi|114550266|gb|EAU53147.1| transcriptional regulator, CarD family protein [alpha
proteobacterium HTCC2255]
Length = 170
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 94/173 (54%), Positives = 124/173 (71%), Gaps = 4/173 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +K FR + +VYPAHGVG I ++ QE+AG ++E FVIAF+KDKM L+VP
Sbjct: 1 MAKGKK----FGEFRLNDFVVYPAHGVGKIMTVETQEIAGTQMELFVIAFEKDKMTLRVP 56
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
KA +GMR L+ VE+A+K ++G+ARVKR MWSRRAQEY+ KINSGDL++IAEVVR
Sbjct: 57 TAKATAVGMRNLASEELVEKAMKTLKGRARVKRAMWSRRAQEYEQKINSGDLMSIAEVVR 116
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
DLHR D + E+SYSERQLYE+AL R+ RE+AAV+ E A + L +++
Sbjct: 117 DLHRNDEEREQSYSERQLYEAALERLTREVAAVDGTDEGVAAEKVTDILVARA 169
>gi|332653050|ref|ZP_08418795.1| transcriptional regulator, CarD family [Ruminococcaceae bacterium
D16]
gi|332518196|gb|EGJ47799.1| transcriptional regulator, CarD family [Ruminococcaceae bacterium
D16]
Length = 158
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 77/158 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +V+P HG G + I +++V G+ E++V+ M + VP +IG+R +
Sbjct: 1 MFQIGDKVVHPMHGAGIVDSIVQKKVNGVMREYYVLKLPVRAMVVMVPTENCEEIGVRPI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +R L + W+RR +E +I SGDL +A VV+ L D Q S
Sbjct: 61 VDREQADRVLAAIPDIQVEMTQNWNRRYRENMERIKSGDLFEVARVVKGLMLRDVQKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ SA ++ EI S S + I+ L+
Sbjct: 121 TGERKMLHSAKQILISEIVMCQSSSYEDVEACIDHALA 158
>gi|319407756|emb|CBI81403.1| transcriptional factor [Bartonella sp. 1-1C]
Length = 191
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 112/187 (59%), Positives = 136/187 (72%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M + + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP
Sbjct: 1 MAPPRNTSFSAEDFSTSEYIVYPTHGVGQIMAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA+ GMRKLS V RA K+++GKAR+KRTMWSRRAQEYD KINSGD+I+IAEVVR
Sbjct: 61 VAKALSTGMRKLSTVDSVNRAFKILQGKARIKRTMWSRRAQEYDTKINSGDIISIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R+ QPE+SYSERQLY AL+RM REIA +N+++E EAINLIE +L KS K+
Sbjct: 121 DLFRSALQPEQSYSERQLYAIALDRMAREIAIINNLTETEAINLIEKHLDKKSKCEFKNE 180
Query: 181 SENQDKA 187
+ + A
Sbjct: 181 IDEGNNA 187
>gi|220927797|ref|YP_002504706.1| CarD family transcriptional regulator [Clostridium cellulolyticum
H10]
gi|219998125|gb|ACL74726.1| transcriptional regulator, CarD family [Clostridium cellulolyticum
H10]
Length = 159
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 76/157 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IVYP HG G I I+E+E+ G ++V+ + + +P DIG+R +
Sbjct: 1 MYNVGDKIVYPMHGAGVIESIEEKEILGKTCSYYVMKIPIGDLKVMIPTNNITDIGIRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ + W++R +E KI SGD+ +A+VVR L + + + S
Sbjct: 61 ISVSEADSVFDFLKNGQHEIPSNWNKRYRENMVKIKSGDIFEVADVVRGLMQREKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
ER++ SA ++ E+ I++ + I+ L
Sbjct: 121 TGERKMLSSAKQILISELVLAKGINQHDVEVKIQEYL 157
>gi|326203337|ref|ZP_08193202.1| transcriptional regulator, CarD family [Clostridium papyrosolvens
DSM 2782]
gi|325986595|gb|EGD47426.1| transcriptional regulator, CarD family [Clostridium papyrosolvens
DSM 2782]
Length = 159
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 78/157 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IVYP HG G I I+E+E+ G K ++V+ + + +P DIG+R +
Sbjct: 1 MYNVGDKIVYPMHGAGVIESIEEKEILGKKCSYYVMKIPIGDLKVMIPTNNITDIGIRGV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ + W++R +E KI SGD+ +A+VVR L + + + S
Sbjct: 61 ISVSEADNVFNFLKDGQHEIPSNWNKRYRENMVKIKSGDIFEVADVVRSLMQREKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
ER++ SA ++ E+ V I++ E I+ L
Sbjct: 121 TGERKMLSSAKQILISELVLVKGINQHEVEIKIQEYL 157
>gi|292571621|gb|ADE29536.1| Transcriptional regulator [Rickettsia prowazekii Rp22]
Length = 177
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 77/172 (44%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+T + + + F+ G+ IVYPAHGVG IT I+ +A +++ +VI+F +DKM LKVP
Sbjct: 4 ITQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIADTEIKVYVISFSQDKMTLKVP 63
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V +A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+R
Sbjct: 64 VNRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLR 123
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
DLH + ++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 124 DLH-KNVDNDRSYSERTLYESALNRLAGELAILENIDPTEAINKLVEVLREK 174
>gi|154497963|ref|ZP_02036341.1| hypothetical protein BACCAP_01943 [Bacteroides capillosus ATCC
29799]
gi|150272953|gb|EDN00110.1| hypothetical protein BACCAP_01943 [Bacteroides capillosus ATCC
29799]
Length = 158
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 77/158 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IV+P HG G + I ++V G+ E++++ M + VP + +IG+R +
Sbjct: 1 MFQVGDKIVHPMHGAGVVDSIVRKKVNGVVREYYILKLPVGGMLVMVPTEHSEEIGVRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +R L + W+RR +E ++ SGDL+ +A VV+ L R D S
Sbjct: 61 CQRDEADRVLAAIPDIEVDMTQNWNRRYRENMMRLKSGDLLEVARVVKGLMRRDEDRGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ SA ++ EI + S + I +S
Sbjct: 121 TGERKMLHSAKQILISEIVLSQNASYEDVEARINGAMS 158
>gi|167629441|ref|YP_001679940.1| transcriptional regulator, card family, putative [Heliobacterium
modesticaldum Ice1]
gi|167592181|gb|ABZ83929.1| transcriptional regulator, card family, putative [Heliobacterium
modesticaldum Ice1]
Length = 158
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 85/158 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I ++E+EV G K ++V+ M + VP G+ +IG+R++
Sbjct: 1 MFAIGDKVVYPMHGAGVIEAVEEREVLGEKRLYYVLRLSLGDMRILVPSGQIAEIGLRQV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+A ++ + +++ + V W RR + K+ +GD+ A+AEVVR+L R + + S
Sbjct: 61 IDAIEADQVMSVLQSRKSVMSNNWHRRYRANLDKMKTGDVYAVAEVVRNLIRRNQEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ E+A +V E+ + ++ L+
Sbjct: 121 TGERRMLENAKQILVSELVLAYDTPPEQIEAMLSRLLA 158
>gi|298253496|ref|ZP_06977286.1| CarD-like transcriptional regulator [Gardnerella vaginalis 5-1]
gi|297532263|gb|EFH71151.1| CarD-like transcriptional regulator [Gardnerella vaginalis 5-1]
Length = 215
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R
Sbjct: 19 EYQVGDMVVYPRHGAARVEEISERTVKGVTRQYLRLVVLSSDGLEINVPVDNVKKVGVRD 78
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 79 IVGAQEVAKVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHG 138
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188
S E+++ A + ++ EIA I E EA L++VNL K + E + ++ A
Sbjct: 139 LSAGEKRMLARARSILISEIALSEKIDEIEAERLLDVNLGYKEPQEGDENHHTVAPEEPA 198
>gi|319406281|emb|CBI79918.1| transcriptional factor [Bartonella sp. AR 15-3]
Length = 191
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 110/183 (60%), Positives = 136/183 (74%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M + + + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP
Sbjct: 1 MAPPRNTSSSAKDFSTSEYIVYPTHGVGQIIAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ KA+ GMRKLS + RA K+++G+AR+KRTMWSRRAQEYD KINSGD+I+IAEVVR
Sbjct: 61 IAKALSTGMRKLSTVDSMNRAFKILQGRARIKRTMWSRRAQEYDTKINSGDIISIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R+D QPE+SYSERQLY AL+RM REIA +NS++E EAINLIE L+ KS K+
Sbjct: 121 DLFRSDLQPEQSYSERQLYTIALDRMAREIAVINSLTEMEAINLIEKYLTKKSKCEFKNE 180
Query: 181 SEN 183
+
Sbjct: 181 IDE 183
>gi|91206102|ref|YP_538457.1| transcriptional regulator [Rickettsia bellii RML369-C]
gi|157826465|ref|YP_001495529.1| transcriptional regulator [Rickettsia bellii OSU 85-389]
gi|91069646|gb|ABE05368.1| Transcriptional regulator [Rickettsia bellii RML369-C]
gi|157801769|gb|ABV78492.1| Transcriptional regulator [Rickettsia bellii OSU 85-389]
Length = 178
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/167 (44%), Positives = 113/167 (67%), Gaps = 1/167 (0%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM +KVPV +A
Sbjct: 10 KTEQQKSEFKIGQRIVYPAHGVGEITNIENHTIAGTEIKVYVISFPQDKMTVKVPVSRAT 69
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++A+AEV+RDLH
Sbjct: 70 VVGLRAVASKKDLDLIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAVAEVLRDLH-K 128
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ ++SYSER LYE+ALNR+ E+A + +I EAIN + L K
Sbjct: 129 NVDNDRSYSERTLYEAALNRLAGELAILENIDSSEAINKLVEVLREK 175
>gi|237784959|ref|YP_002905664.1| putative transcription factor [Corynebacterium kroppenstedtii DSM
44385]
gi|237757871|gb|ACR17121.1| putative transcription factor [Corynebacterium kroppenstedtii DSM
44385]
Length = 196
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 85/175 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG I + +++++ G +++ V+ + + ++VP A +G+R +
Sbjct: 2 EFNIGDTVVYPHHGAAVIEKKEQRQIKGETVDYLVLKVHQGDLTVRVPEKNAESVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGEEGLLKVFSVLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKA 187
E+++ A +V E+A + + +A + + + + K E++D
Sbjct: 122 AGEKRMLAKARQVLVGELALADGTDDAKADAMYQEAQEAIARHRAKLLGEDEDST 176
>gi|319404796|emb|CBI78397.1| transcriptional factor [Bartonella rochalimae ATCC BAA-1498]
Length = 191
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 111/187 (59%), Positives = 136/187 (72%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M + + F T E+IVYP HGVG I I+EQEVAG KL+ FVI F KDKM +KVP
Sbjct: 1 MAPPRNTSFSAEDFSTSEYIVYPTHGVGQIMAIEEQEVAGHKLKLFVIHFAKDKMDVKVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA+ GMRKLS V RA K+++GKAR+KRTMWSRRAQEYD KINSG++I+IAEVVR
Sbjct: 61 VAKALSTGMRKLSTVDSVNRAFKILQGKARIKRTMWSRRAQEYDTKINSGNIISIAEVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R+ QPE+SYSERQLY AL+RM REIA +N+++E EAINLIE +L KS K+
Sbjct: 121 DLFRSALQPEQSYSERQLYAIALDRMAREIAIINNLTETEAINLIEKHLDKKSKCDFKNE 180
Query: 181 SENQDKA 187
+ + A
Sbjct: 181 IDEGNNA 187
>gi|295694809|ref|YP_003588047.1| transcriptional regulator, CarD family [Bacillus tusciae DSM 2912]
gi|295410411|gb|ADG04903.1| transcriptional regulator, CarD family [Bacillus tusciae DSM 2912]
Length = 165
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I I+E+EV G ++++ + + VP+ + +G+R++
Sbjct: 1 MFNVGDRVVYPMHGAGVIESIEEREVLGKTGRYYIMRMPVGDIKVMVPIEQTGAVGLREV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+A V + L ++ + + W+RR ++ KI SGD AIA+VVR L D S
Sbjct: 61 VDAEGVHKILDILFDEGTQETAAWNRRYRDNMDKIKSGDAFAIADVVRQLAWLDRHKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
E+++YE A ++ E+ + +A + +E
Sbjct: 121 TGEKRMYEMARQILLSELRLA--APQEDA-DRLEE 152
>gi|212716130|ref|ZP_03324258.1| hypothetical protein BIFCAT_01045 [Bifidobacterium catenulatum DSM
16992]
gi|212661497|gb|EEB22072.1| hypothetical protein BIFCAT_01045 [Bifidobacterium catenulatum DSM
16992]
Length = 198
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGITREYLQLSVLSSDGLVINVPVDNAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A N + EI+ + E EA L++VNL EK +E ++AA
Sbjct: 122 LSAGEKRMLTKARNILTSEISLSEKLDETEAQRLLDVNLGYEPAQPGDEKHHTEAPEEAA 181
>gi|227502085|ref|ZP_03932134.1| CarD family transcriptional regulator [Corynebacterium accolens
ATCC 49725]
gi|306836888|ref|ZP_07469843.1| CarD family transcriptional regulator [Corynebacterium accolens
ATCC 49726]
gi|227077144|gb|EEI15107.1| CarD family transcriptional regulator [Corynebacterium accolens
ATCC 49725]
gi|304567229|gb|EFM42839.1| CarD family transcriptional regulator [Corynebacterium accolens
ATCC 49726]
Length = 194
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 85/156 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ GE +VYP HG I +I+ +E+ G +LE+ V+ ++ + ++VP A ++G+R +
Sbjct: 2 EYKVGEVVVYPHHGAAVIEDIETREMGGEELEYLVLHINQSDLVVRVPKKNADNVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E+ ++R + + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGKEGLEKVFSVLRDEDVEEAGNWSRRYKANQERLASGDINKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E+++ A +V E+A + + +A ++E
Sbjct: 122 AGEKRMLGKARTILVGELALAQPVDDKKADTMMEEI 157
>gi|224282833|ref|ZP_03646155.1| transcriptional regulator [Bifidobacterium bifidum NCIMB 41171]
gi|310287288|ref|YP_003938546.1| transcriptional regulator, CarD family [Bifidobacterium bifidum
S17]
gi|311064136|ref|YP_003970861.1| transcriptional regulator CarD [Bifidobacterium bifidum PRL2010]
gi|313139992|ref|ZP_07802185.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|309251224|gb|ADO52972.1| transcriptional regulator, CarD family [Bifidobacterium bifidum
S17]
gi|310866455|gb|ADP35824.1| CarD transcriptional regulator [Bifidobacterium bifidum PRL2010]
gi|313132502|gb|EFR50119.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 198
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + I E+ V G+K E+ + + + VPV A +G+R
Sbjct: 2 GYKVGDMVVYPRHGAARVEAITERVVKGVKREYLQLTVLSSDGLVINVPVENAQKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ +A+ V + +++R K WSRR + K+ +GD+ IAEVVRDL + D +
Sbjct: 62 IVDANEVAKVFEILRTPIVEKEMNWSRRYKLNVEKLATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + + EIA + E E L++VNL S EK SE + A
Sbjct: 122 LSAGEKRMLTRARSILTSEIALSEDLDEAEIQRLLDVNLGFSEPKPGDEKHHSEAPAEPA 181
>gi|309389958|gb|ADO77838.1| transcriptional regulator, CarD family [Halanaerobium praevalens
DSM 2228]
Length = 168
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 75/155 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ G+ +VYP HG GTI I + + K E++++ +M + +PV K IG+R +
Sbjct: 1 MYKIGDKVVYPNHGAGTIVGIDTKTILDEKKEYYIMKLPIGEMKVMIPVDKIDKIGIRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +L+ G+ W+RR + K+ +GD+ +AEVVR+L D S
Sbjct: 61 ISEEKADEVFELLDGEKSKMSQNWNRRFRANQEKLKTGDIFEVAEVVRNLSIRDRDKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
E+++ +A ++ E+ + E ++
Sbjct: 121 TGEKKMLSNARQILISELVLAKDMDEESVSEKMDD 155
>gi|296453869|ref|YP_003661012.1| CarD family transcriptional regulator [Bifidobacterium longum
subsp. longum JDM301]
gi|296183300|gb|ADH00182.1| transcriptional regulator, CarD family [Bifidobacterium longum
subsp. longum JDM301]
Length = 197
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 SYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNARKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + ++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + EIA I E EA L++VNL +K + ++AA
Sbjct: 122 LSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEAA 181
>gi|269217464|ref|ZP_06161318.1| transcriptional regulator, CarD family [Actinomyces sp. oral taxon
848 str. F0332]
gi|269213085|gb|EEZ79425.1| transcriptional regulator, CarD family [Actinomyces sp. oral taxon
848 str. F0332]
Length = 163
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 86/161 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ GE +VYP HG I ++ +++ G + + + + + ++VP D+G+R +
Sbjct: 2 SYTIGETVVYPHHGAARIEDVFTRKIRGEEKTYLKLRVVQGDLEIQVPADMLEDVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S+ +++ ++R + + + WSRR + K+ SGD+I +AEVVRDL R D+ S
Sbjct: 62 SDDEQLKQVFTVLRAEQIEEPSNWSRRYKANSEKLTSGDVIKVAEVVRDLTRRDADRHLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+++ A + E+A +SE EA+ L++ L +
Sbjct: 122 AGEKRMLSQARQILGSEVALARQVSEGEALELLDEILGESA 162
>gi|116327105|ref|YP_796825.1| transcriptional regulator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116332238|ref|YP_801956.1| transcriptional regulator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116119849|gb|ABJ77892.1| Transcriptional regulator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116125927|gb|ABJ77198.1| Transcriptional regulator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 181
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++K + G+++VYP HGVG I EI ++ + G K + +V+ KM + +P
Sbjct: 1 MAAKKKNS--EIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIP 58
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA + +R + + +++ + L++ W R Q KI SG + + EV R
Sbjct: 59 VDKAEQVRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCR 118
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
+L R S E S ER+LYESA N + E+A +++ EA NL+ L+S + +EK
Sbjct: 119 NLFRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLAPSEKKA 178
Query: 181 SEN 183
E+
Sbjct: 179 EED 181
>gi|229087271|ref|ZP_04219415.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-44]
gi|228696061|gb|EEL48902.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-44]
Length = 164
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+++EV G ++ VI M + +P+ K G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEDKEVLGKTRQYCVIHMVISDMQVMIPMDKVATSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + L W +R K+ +GDL AEVVRDL R + + +
Sbjct: 67 DKNTLNDVLVGFHNGEADSSLSWKQRYTMNMEKMKNGDLSDGAEVVRDLIRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A ++ E+A V ++SE +A + ++ ++
Sbjct: 127 SEKQMLDNARRILISEVALVQNVSENQATDFLQDTIN 163
>gi|83591305|ref|YP_431314.1| CarD family transcriptional regulator [Moorella thermoacetica ATCC
39073]
gi|83574219|gb|ABC20771.1| transcriptional regulator, CarD family [Moorella thermoacetica ATCC
39073]
Length = 158
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 86/158 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG G I I+E+EV G K +++++ M + +P+ +G+R++
Sbjct: 1 MFKVGDKVVYPMHGAGVIEAIEEREVLGKKRKYYILRLPLGDMKVMIPLESEQAVGLREV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ +K+++ W+RR + K+ SG++ +AEVV +L R + S
Sbjct: 61 IDEKEIQEVIKILKEPRSNGSGNWNRRYRANLEKMRSGNIYQLAEVVGNLSRREHDQGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ E+A ++ E+A + + + N++E L+
Sbjct: 121 TGERKMLENARQMLISELALARNAEKNQVENMLEKLLA 158
>gi|121602125|ref|YP_988461.1| CarD family transcriptional regulator [Bartonella bacilliformis
KC583]
gi|120614302|gb|ABM44903.1| transcriptional regulator, CarD family [Bartonella bacilliformis
KC583]
Length = 192
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 112/188 (59%), Positives = 143/188 (76%), Gaps = 2/188 (1%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M QQK+ + GF T E+IVYP HGVG I I+EQEVAG KLE FVI F KDKM +KVP
Sbjct: 1 MASQQKKTS--HGFSTSEYIVYPTHGVGQIMVIEEQEVAGHKLELFVIHFAKDKMDVKVP 58
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ KA+ GMRKLSE VE+ALK+++GKAR+KR MWSRRAQEYD KINSG+ + IAEVVR
Sbjct: 59 IAKALSTGMRKLSEPASVEKALKILQGKARIKRIMWSRRAQEYDTKINSGNFMFIAEVVR 118
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
DL R+D QPE+SYSERQLY +AL+RM REI+ +N++SE EA+NLIE +L+ + ++
Sbjct: 119 DLFRSDLQPEQSYSERQLYAAALDRMSREISVINNLSETEAVNLIEKHLNEGQKSSFEAK 178
Query: 181 SENQDKAA 188
+ D+ +
Sbjct: 179 IDEADEDS 186
>gi|46190223|ref|ZP_00121736.2| COG1329: Transcriptional regulators, similar to M. xanthus CarD
[Bifidobacterium longum DJO10A]
gi|189439614|ref|YP_001954695.1| transcriptional_regulator [Bifidobacterium longum DJO10A]
gi|213692627|ref|YP_002323213.1| transcriptional regulator, CarD family [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|227546164|ref|ZP_03976213.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|312133013|ref|YP_004000352.1| transcriptional regulator [Bifidobacterium longum subsp. longum
BBMN68]
gi|322688825|ref|YP_004208559.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
157F]
gi|322690813|ref|YP_004220383.1| transcriptional regulator [Bifidobacterium longum subsp. longum JCM
1217]
gi|189428049|gb|ACD98197.1| Transcriptional_regulator [Bifidobacterium longum DJO10A]
gi|213524088|gb|ACJ52835.1| transcriptional regulator, CarD family [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|227213145|gb|EEI81017.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|291517113|emb|CBK70729.1| transcriptional regulator, CarD family [Bifidobacterium longum
subsp. longum F8]
gi|311774000|gb|ADQ03488.1| transcriptional regulator [Bifidobacterium longum subsp. longum
BBMN68]
gi|320455669|dbj|BAJ66291.1| putative transcriptional regulator [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320458778|dbj|BAJ69399.1| putative transcriptional regulator [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320460161|dbj|BAJ70781.1| putative transcriptional regulator [Bifidobacterium longum subsp.
infantis 157F]
Length = 197
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 SYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + ++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + EIA I E EA L++VNL +K + ++AA
Sbjct: 122 LSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEAA 181
>gi|260905792|ref|ZP_05914114.1| transcriptional regulator, CarD family protein [Brevibacterium
linens BL2]
Length = 160
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 82/159 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG TI +IK++ + G + + + + ++VP +G+R +
Sbjct: 2 SFEVGDTVVYPHHGAATIQDIKKRTIKGEEKLYLKLQVAHGDLVIEVPAENCDLVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
VE+ ++R + + T WSRR + K+ SGD+I +AEVVRDL R + S
Sbjct: 62 VGEEGVEKVFNVLRAEFVEEPTNWSRRYKANLEKLQSGDVIKVAEVVRDLWRREQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E EA +++ L+S
Sbjct: 122 TGEKRMLSKARQILVSELALAEKKEESEAEAILDEVLAS 160
>gi|332976449|gb|EGK13297.1| CarD family transcriptional regulator [Desmospora sp. 8437]
Length = 162
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 79/155 (50%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I ++E+E+ G K +++I + + +P + D+G+R +
Sbjct: 5 FQVGDKIVYPLHGAGVIDAVEEKEILGKKQRYYIIHMSLGNVQIMIPADRIDDMGLRHIV 64
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +E L W++R + K+ +GD+ EV+RDL + + +
Sbjct: 65 DPDTMENVFLLFNDDPSASSGSWNQRFRMNMDKMKTGDIFKTTEVIRDLAQINKEKSLGT 124
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E++L ++A ++ E+ V I E +AI L++
Sbjct: 125 GEKKLLDNAKQILISELVLVKEIEEEQAIQLLDEA 159
>gi|67458425|ref|YP_246049.1| transcriptional regulator [Rickettsia felis URRWXCal2]
gi|67003958|gb|AAY60884.1| Transcriptional regulator [Rickettsia felis URRWXCal2]
Length = 177
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 78/171 (45%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T + + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV
Sbjct: 5 TQSENKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPV 64
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD
Sbjct: 65 SRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 124
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
LH + ++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 125 LH-KNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 174
>gi|23465567|ref|NP_696170.1| transcriptional regulator [Bifidobacterium longum NCC2705]
gi|23326233|gb|AAN24806.1| possible transcriptional regulator [Bifidobacterium longum NCC2705]
Length = 197
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 SYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + ++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVSASEVAKVFDILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + EIA I E EA L++VNL +K + ++AA
Sbjct: 122 LSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEAA 181
>gi|301060351|ref|ZP_07201214.1| CarD-like protein [delta proteobacterium NaphS2]
gi|300445547|gb|EFK09449.1| CarD-like protein [delta proteobacterium NaphS2]
Length = 159
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 87/159 (54%), Gaps = 1/159 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ VYPAHGVG I +I+ QE++G K +F+V+ + M + +P +G+R +
Sbjct: 1 MFQVGDLAVYPAHGVGVIEKIESQEISGCKQDFYVMRILDNDMIIMIPTTNVDHVGLRDI 60
Query: 73 SEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + +++ + + W+RR +EY KI +G + +AEV RDL E
Sbjct: 61 IPKTELPKLFSILKKRDVTLDSQTWNRRYREYMEKIKTGSVFEVAEVYRDLLILRYDKEL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
S+ ER++ ++A +V+EI+ I+E + + ++ S
Sbjct: 121 SFGERKMLDTARTLLVKEISLAKEITESQVESDLDRMFS 159
>gi|242280390|ref|YP_002992519.1| CarD family transcriptional regulator [Desulfovibrio salexigens DSM
2638]
gi|242123284|gb|ACS80980.1| transcriptional regulator, CarD family [Desulfovibrio salexigens
DSM 2638]
Length = 171
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 3/171 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + +VYP+ GVG + I+ QE+ G EF+++ + + L VPV A ++G+R +
Sbjct: 1 MFELDQLVVYPSQGVGKVERIESQEIGGATAEFYIVRILSNNVTLMVPVMNAHNVGLRAV 60
Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + ++ ++ W+RR +EY K+ SGDL +A V+++L
Sbjct: 61 CDKDAGMEIFESLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLQDVAYVLKELFLIGRDK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
E S+ ER+L E A+ + E++ + + E I S K E+ +
Sbjct: 121 ELSFGERRLLEQAMGLVSMELSFALDLDQEEIKEDINALFSDVLEKQEEES 171
>gi|157825168|ref|YP_001492888.1| transcriptional regulator [Rickettsia akari str. Hartford]
gi|157799126|gb|ABV74380.1| Transcriptional regulator [Rickettsia akari str. Hartford]
Length = 177
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 1/171 (0%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T + + + GF+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV
Sbjct: 5 TQSENKTEQKSGFKIGQRIVYPAHGVGEITNIEYNTIAGTEIKVYVISFSQDKMTLKVPV 64
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD
Sbjct: 65 SRAAVVGLRAVASRKDLDLIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 124
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
LH + ++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 125 LH-KNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 174
>gi|323700581|ref|ZP_08112493.1| transcriptional regulator, CarD family [Desulfovibrio sp. ND132]
gi|323460513|gb|EGB16378.1| transcriptional regulator, CarD family [Desulfovibrio desulfuricans
ND132]
Length = 171
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ E +VYP+ GVG + ++ QE+ G+K +F+++ + + L VPV A+++G+R +
Sbjct: 1 MFKVDELVVYPSQGVGRVERVESQEIGGVKADFYIVRILSNNVTLMVPVANAVNVGLRSV 60
Query: 73 SEAHFVERALKLVRGK---ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
A + + ++ + W+RR +EY K+ SGDL +A V+++L
Sbjct: 61 CPADVGQAIFESLKDRTGFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLKELFLIGKDK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
E S+ ER+L E A+ + E+A S+ E I + + EK
Sbjct: 121 ELSFGERRLLEQAMGLVSMELAYSLDRSQEEIKGDINEMFADVIAAQEK 169
>gi|308235377|ref|ZP_07666114.1| CarD-like protein [Gardnerella vaginalis ATCC 14018]
Length = 198
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R
Sbjct: 2 GYQVGDMVVYPRHGAARVEEISERTVKGITRQYLRLVVLSSDGLEINVPVDNVKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVGAKEVAKVFEILRTPILEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + ++ EIA I E +A L+ VNL + E+ ++ ++AA
Sbjct: 122 LSAGEKRMLARARSILISEIALSEKIDEEQAERLLNVNLGYADPLPGDEQHHTQAPEEAA 181
>gi|317481883|ref|ZP_07940910.1| CarD-like/TRCF domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
gi|316916674|gb|EFV38069.1| CarD-like/TRCF domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
Length = 197
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 SYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + ++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + EIA I E EA L++VNL +K + + AA
Sbjct: 122 LSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEDAA 181
>gi|312144273|ref|YP_003995719.1| transcriptional regulator, CarD family [Halanaerobium sp.
'sapolanicus']
gi|311904924|gb|ADQ15365.1| transcriptional regulator, CarD family [Halanaerobium sp.
'sapolanicus']
Length = 166
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 77/155 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ G+ +VYP HG GTI I+ + + K +++++ +M + +PV K IG+R +
Sbjct: 1 MYKIGDKVVYPNHGAGTIVGIETKTILDEKKKYYIMKLPIGEMKVMIPVDKIDKIGIRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
KL+ G+ W+RR + K+ +GD+ +AEVVR+L D + S
Sbjct: 61 ISEEKANDVFKLLNGEKSKMSQNWNRRYRANQEKLKTGDIFEVAEVVRNLSIRDREKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
E+++ +A ++ E+ + E E ++
Sbjct: 121 TGEKKMLSNARKILISELVLAKDMDEEEIAEKMDD 155
>gi|332703818|ref|ZP_08423906.1| transcriptional regulator, CarD family [Desulfovibrio africanus
str. Walvis Bay]
gi|332553967|gb|EGJ51011.1| transcriptional regulator, CarD family [Desulfovibrio africanus
str. Walvis Bay]
Length = 194
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +VYPA GVG + I+ QE+ G EF+++ + + L VPV A ++G+R +
Sbjct: 26 FSPNDLVVYPAQGVGRVERIQRQEIGGASTEFYIVRILSNNVTLMVPVPNARNVGLRPVC 85
Query: 74 EAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
A E L+ ++ ++ W+RR +EY K+ SG L +A V+++L + E
Sbjct: 86 SATSGEAILESLKDRSDFTGYTGQNWNRRYREYSEKLKSGALEDVAYVLKELLLIGNDKE 145
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
S+ ER+L E A+N + E++ + E I
Sbjct: 146 LSFGERRLLEQAMNLITLELSFCLEKPQKEIQERINSLFE 185
>gi|225351869|ref|ZP_03742892.1| hypothetical protein BIFPSEUDO_03471 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157116|gb|EEG70455.1| hypothetical protein BIFPSEUDO_03471 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 198
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGITREYLQLSVLSSDGLVINVPVDNAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + + EI+ + E EA L++VNL E+ +E ++AA
Sbjct: 122 LSAGEKRMLTKARSILTSEISLSEHLDEAEAQRLLDVNLGYEPAQPGDEEHHTEAPEEAA 181
>gi|83942849|ref|ZP_00955310.1| transcriptional regulator, CarD family protein [Sulfitobacter sp.
EE-36]
gi|83846942|gb|EAP84818.1| transcriptional regulator, CarD family protein [Sulfitobacter sp.
EE-36]
Length = 160
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 99/156 (63%), Positives = 118/156 (75%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
E +VYPAHGVG I ++EQEVAG+ LE FVIAF+KDKM L+VP KA +IGMR LS
Sbjct: 1 NEFVVYPAHGVGQIISVEEQEVAGISLELFVIAFEKDKMTLRVPTHKATEIGMRALSSPD 60
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
+ A+K ++GKA+VKR MWSRRAQEY+ KINSGDLIAIAEVVRDLHRTD Q E+SYSER
Sbjct: 61 VISHAMKTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSYSER 120
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
QLYE+AL R+ RE+AAV E A + L S+
Sbjct: 121 QLYEAALERLTREVAAVAGGDELAASKQVGDVLESR 156
>gi|15891953|ref|NP_359667.1| hypothetical protein RC0030 [Rickettsia conorii str. Malish 7]
gi|157827900|ref|YP_001494142.1| hypothetical protein A1G_00190 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165932588|ref|YP_001649377.1| carD-like transcriptional regulator [Rickettsia rickettsii str.
Iowa]
gi|238650343|ref|YP_002916195.1| carD-like transcriptional regulator [Rickettsia peacockii str.
Rustic]
gi|15619064|gb|AAL02568.1| unknown [Rickettsia conorii str. Malish 7]
gi|157800381|gb|ABV75634.1| hypothetical protein A1G_00190 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165907675|gb|ABY71971.1| carD-like transcriptional regulator [Rickettsia rickettsii str.
Iowa]
gi|238624441|gb|ACR47147.1| carD-like transcriptional regulator [Rickettsia peacockii str.
Rustic]
Length = 173
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A
Sbjct: 6 QSEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAV 65
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH +
Sbjct: 66 VGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLH-KN 124
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 125 VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 170
>gi|158319511|ref|YP_001512018.1| CarD family transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158139710|gb|ABW18022.1| transcriptional regulator, CarD family [Alkaliphilus oremlandii
OhILAs]
Length = 167
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 85/161 (52%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F GE +VYP HG G I I+E+E+ G + +++++ M + +P+ + DIG+RK+
Sbjct: 1 MFNIGEKVVYPIHGAGVIESIEEREILGERRKYYIMKMPIGDMQVMIPLDQIDDIGIRKV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + L+++ W+RR + I +GD+ +A+VVR+L + + S
Sbjct: 61 IDVEEIGSVLEILASDTTKMHQNWNRRYRANMDLIKTGDIYEVADVVRNLTLMEKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
ER++ +A ++ EI V ISE EA L+E + +
Sbjct: 121 TGERKMLNNARQILLSEIVLVAEISEEEASKLVEKVILQQE 161
>gi|86157697|ref|YP_464482.1| CarD family transcriptional regulator [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197122995|ref|YP_002134946.1| CarD family transcriptional regulator [Anaeromyxobacter sp. K]
gi|220917784|ref|YP_002493088.1| transcriptional regulator, CarD family [Anaeromyxobacter
dehalogenans 2CP-1]
gi|85774208|gb|ABC81045.1| transcriptional regulator, CarD family [Anaeromyxobacter
dehalogenans 2CP-C]
gi|196172844|gb|ACG73817.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. K]
gi|219955638|gb|ACL66022.1| transcriptional regulator, CarD family [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 171
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ VYP GVG + I+ +EVAG + F+V+ ++ M + +P+ K +G+R++
Sbjct: 13 FKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPMNKVGSVGLREII 72
Query: 74 EAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
V R ++R K V T W+RR +EY KI +G + IAEV+RDL+ S + S
Sbjct: 73 GEKDVRRVYGILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLRDLYLLRSDKDLS 132
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ ER++ ++A + +++E+A + E + + ++ +
Sbjct: 133 FGERKMLDTARSLLIKELAIAKACDEQDVEDDLKKIFN 170
>gi|294827601|ref|NP_710430.2| transcriptional regulator [Leptospira interrogans serovar Lai str.
56601]
gi|293385445|gb|AAN47448.2| transcriptional regulator [Leptospira interrogans serovar Lai str.
56601]
Length = 181
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 2/183 (1%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++K + G+++VYP HGVG I EI ++ + G K + +V+ KM + +P
Sbjct: 1 MAAKKKNS--EIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIP 58
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA + +R + + +++ + L++ W R Q KI SG + + EV R
Sbjct: 59 VDKAEQVRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCR 118
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
+L R S E S ER+LYESA N + E+A +++ EA NL+ L+S S +EK
Sbjct: 119 NLFRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGNLVSDVLASTLSPSEKKA 178
Query: 181 SEN 183
E
Sbjct: 179 EEE 181
>gi|157964091|ref|YP_001498915.1| transcriptional regulator [Rickettsia massiliae MTU5]
gi|157843867|gb|ABV84368.1| Transcriptional regulator [Rickettsia massiliae MTU5]
Length = 195
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 78/171 (45%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T + + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV
Sbjct: 23 TQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPV 82
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD
Sbjct: 83 SRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 142
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
LH + ++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 143 LH-KNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 192
>gi|218781211|ref|YP_002432529.1| CarD family transcriptional regulator [Desulfatibacillum
alkenivorans AK-01]
gi|218762595|gb|ACL05061.1| transcriptional regulator, CarD family [Desulfatibacillum
alkenivorans AK-01]
Length = 177
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 1/165 (0%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ F + VYPAHGVG I ++ + + G K F+++ ++ M + +P +
Sbjct: 13 ASEEYTFSVNDLAVYPAHGVGRIEAVETRTIGGEKQSFYIMRILENDMVIMIPTQNVESV 72
Query: 68 GMRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G+R++ V + ++ K W+RR ++Y KI +G L +A V RDL+
Sbjct: 73 GLREVIRKGDVSQVYAILGEKEIPPDNQTWNRRYRDYMEKIKTGSLFEVAGVFRDLYLLK 132
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ S+ ER+L ++A +++E++ S +E ++ IE L S
Sbjct: 133 VTKDLSFGERKLLDTAQTLLLKELSIAKSCTEEVIMSEIESLLES 177
>gi|229817858|ref|ZP_04448140.1| hypothetical protein BIFANG_03144 [Bifidobacterium angulatum DSM
20098]
gi|229784758|gb|EEP20872.1| hypothetical protein BIFANG_03144 [Bifidobacterium angulatum DSM
20098]
Length = 197
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 GYKVGDMVVYPRHGAARVEAITERTVRGVTREYLELSVLSADGLVINVPVDNAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + + EIA I E EA L++VNL S EK ++ ++AA
Sbjct: 122 LSAGEKRMLTKARSILTSEIALSEKIEESEAQRLLDVNLGYSPAKPGDEKHHTQEPEEAA 181
>gi|229586256|ref|YP_002844757.1| Transcriptional regulator [Rickettsia africae ESF-5]
gi|228021306|gb|ACP53014.1| Transcriptional regulator [Rickettsia africae ESF-5]
Length = 173
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A
Sbjct: 6 QSEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAV 65
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH +
Sbjct: 66 VGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLH-KN 124
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 125 VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 170
>gi|94967584|ref|YP_589632.1| CarD family transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94549634|gb|ABF39558.1| transcriptional regulator, CarD family [Candidatus Koribacter
versatilis Ellin345]
Length = 186
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 76/172 (44%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HGVG I +I + + + + + + + VP +G+R++
Sbjct: 14 SFIVGDKVVYPNHGVGIIEQISSRTIGAAVQKCYWLKIKASSLRVMVPFDSVHLVGLRRV 73
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++ + W R +E K+ +G L+ +A V++ L S
Sbjct: 74 VRNGEITKIIEYLSDGKCESNHDWKDRFKENSDKMRTGSLMEVAGVLKSLLLLGQSKPLS 133
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184
+ E+++ E A +V E+A S EPE L+ L + +++S +
Sbjct: 134 FREKKMLERARYLLVSELAMAKSCEEPEVEELLGRALQKCKLRFPEASSIAE 185
>gi|239948445|ref|ZP_04700198.1| transcriptional regulator [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922721|gb|EER22745.1| transcriptional regulator [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 177
Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 78/171 (45%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T + + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV
Sbjct: 5 TQSEHKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPV 64
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD
Sbjct: 65 SRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 124
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
LH + ++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 125 LH-KNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 174
>gi|34581009|ref|ZP_00142489.1| hypothetical protein [Rickettsia sibirica 246]
gi|28262394|gb|EAA25898.1| unknown [Rickettsia sibirica 246]
Length = 173
Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV +A
Sbjct: 6 QSEQKSEFKIGQRIVYPAHGVGEITNIEYYTIAGTEIKVYVISFSQDKMTLKVPVSRAAV 65
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RDLH +
Sbjct: 66 VGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLH-KN 124
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 125 VDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 170
>gi|315186624|gb|EFU20383.1| transcriptional regulator, CarD family [Spirochaeta thermophila DSM
6578]
Length = 218
Score = 127 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 54/175 (30%), Positives = 81/175 (46%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT + F+ +H+VYP GVG + I+E+E G L ++VI M + VP
Sbjct: 1 MTSRNTSAQPEPQFKVHDHVVYPLQGVGEVVRIEEREFKGEGLLYYVIYIPVSDMTVMVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA +IG+R + AL + + T W R Q + G ++ IA VVR
Sbjct: 61 VHKAAEIGIRPIVSREEALEALDFISENPQAGPTDWKTRYQMNLDLLKKGSVMDIARVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
L+ E ER+L+++AL +V EI+ IS E I L +S+
Sbjct: 121 ALYYRSKIKELPILERKLFDNALRILVDEISFALEISAKEVEARIFQQLEQESAP 175
>gi|183222034|ref|YP_001840030.1| CarD family transcriptional regulator [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189912101|ref|YP_001963656.1| transcriptional regulator [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167776777|gb|ABZ95078.1| Transcriptional regulator [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167780456|gb|ABZ98754.1| Transcriptional regulator, CarD family [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 193
Score = 127 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 6/191 (3%)
Query: 1 MTFQQKRDAMRQ-GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
M ++ + ++ F+ G+++VYP HGVG +TE+ ++ + G K + + + KM + +
Sbjct: 1 MATKKLNEKTKEPKFKVGDYVVYPIHGVGEVTEVAKKLILGKKKDCYSLEIQGSKMKVSI 60
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV +A+D+G+R + + +++ L L++ W R Q KI SG + +A+V
Sbjct: 61 PVDRAMDVGIRSIIDKKEIKKVLTLLKKDEVDTEEDWKVRYQNNMNKIKSGSIFEVADVC 120
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS-----KSS 174
R+L+R E S ER+LYESA N + EIA + + EA N++ L++
Sbjct: 121 RNLYRRAYGKELSIMERKLYESAYNLVKMEIALSKGVPQEEAGNIVSDVLAASVQGIAPP 180
Query: 175 KTEKSTSENQD 185
K ++ D
Sbjct: 181 PPPKELDDDLD 191
>gi|283783080|ref|YP_003373834.1| CarD-like protein [Gardnerella vaginalis 409-05]
gi|283440982|gb|ADB13448.1| CarD-like protein [Gardnerella vaginalis 409-05]
Length = 198
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R
Sbjct: 2 EYQVGDMVVYPRHGAARVEEISERTVKGVTRQYLRLVVLSSDGLEINVPVDNVKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVGAQEVAKVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188
S E+++ A + ++ EIA I E EA L++VNL K + E + ++ A
Sbjct: 122 LSAGEKRMLARARSILISEIALSEKIDEIEAERLLDVNLGYKEPQEGDENHHTVAPEEPA 181
>gi|291059888|gb|ADD72623.1| transcription factor [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 243
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 73/163 (44%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
FR +H+VYP GVG + EI E+ L ++VI ++ M + +PV KA ++G+R +
Sbjct: 71 FRPHDHVVYPGQGVGQVQEISEKTFKNETLLYYVIYLEESDMTVLIPVDKAQELGIRTIV 130
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ERAL+ + W R Q SG ++ A VVR L+ E
Sbjct: 131 KRKEAERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELPI 190
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
ER+LY+SA E+ + PE LI L
Sbjct: 191 QERRLYDSAYRIFQDEMCFALGLRPPEVETLIHGYLEKAKENP 233
>gi|15639502|ref|NP_218952.1| transcription factor (carD) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025741|ref|YP_001933513.1| transcription factor [Treponema pallidum subsp. pallidum SS14]
gi|3322803|gb|AAC65499.1| transcription factor (carD) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018316|gb|ACD70934.1| transcription factor [Treponema pallidum subsp. pallidum SS14]
Length = 208
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 73/163 (44%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
FR +H+VYP GVG + EI E+ L ++VI ++ M + +PV KA ++G+R +
Sbjct: 36 FRPHDHVVYPGQGVGQVQEISEKTFKNETLLYYVIYLEESDMTVLIPVDKAQELGIRTIV 95
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ERAL+ + W R Q SG ++ A VVR L+ E
Sbjct: 96 KRKEAERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELPI 155
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
ER+LY+SA E+ + PE LI L
Sbjct: 156 QERRLYDSAYRIFQDEMCFALGLRPPEVETLIHGYLEKAKENP 198
>gi|150392190|ref|YP_001322239.1| CarD family transcriptional regulator [Alkaliphilus metalliredigens
QYMF]
gi|149952052|gb|ABR50580.1| transcriptional regulator, CarD family [Alkaliphilus
metalliredigens QYMF]
Length = 159
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 77/156 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ IVYP HG G I I+E+E+ G K +++++ M + +P+ ++G+R +
Sbjct: 1 MFNIGDKIVYPMHGAGVIEAIEEKEILGKKRKYYIMKMPLGDMQVMIPLDHIEEVGIRSI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
VE+ ++ W+RR + I GD+ A+AEVVR+L D + S
Sbjct: 61 IGLAEVEQVFAVLAADTTKMPQNWNRRYRANMDLIKGGDIYAVAEVVRNLLLRDREKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
ER++ +A +V E+ E E ++ IE
Sbjct: 121 TGERKMLNNAKQILVSEVVLSTDKEEQEVLDWIENV 156
>gi|125975421|ref|YP_001039331.1| CarD family transcriptional regulator [Clostridium thermocellum
ATCC 27405]
gi|256005283|ref|ZP_05430249.1| transcriptional regulator, CarD family [Clostridium thermocellum
DSM 2360]
gi|281419382|ref|ZP_06250397.1| transcriptional regulator, CarD family [Clostridium thermocellum
JW20]
gi|125715646|gb|ABN54138.1| transcriptional regulator, CarD family [Clostridium thermocellum
ATCC 27405]
gi|255990719|gb|EEU00835.1| transcriptional regulator, CarD family [Clostridium thermocellum
DSM 2360]
gi|281407002|gb|EFB37265.1| transcriptional regulator, CarD family [Clostridium thermocellum
JW20]
gi|316939546|gb|ADU73580.1| transcriptional regulator, CarD family [Clostridium thermocellum
DSM 1313]
Length = 158
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 84/158 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IVYP HG G I I+E+E+ G K ++V+ +M + +P+ IG+R++
Sbjct: 1 MYNIGDKIVYPMHGAGVIESIEEREILGKKQSYYVVKIPIGEMKVLIPIKNVDGIGIREV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ +++ KA T W++R +E +KI SG++ +A+VVR L D S
Sbjct: 61 ISEEDADKVFLILKNKALPSNTNWNKRYRENMSKIKSGNIFEVADVVRCLMLRDKLKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ SA ++ E+ +++ E +I+ +S
Sbjct: 121 TGEKKMLNSAKQILISELVLAKNMNPMEIEGMIDKYIS 158
>gi|157803212|ref|YP_001491761.1| hypothetical protein A1E_00115 [Rickettsia canadensis str. McKiel]
gi|157784475|gb|ABV72976.1| hypothetical protein A1E_00115 [Rickettsia canadensis str. McKiel]
Length = 175
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 114/171 (66%), Gaps = 2/171 (1%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T Q + + F+ G+ IVYPAHGVG IT I+ +AG +++ +VI+F +DKM LKVPV
Sbjct: 4 TTQSEHKT-KSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFAQDKMTLKVPV 62
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+A +G+R ++ ++ ++GK + MWSRRAQEY+ KINSG+++AIAEV+RD
Sbjct: 63 NRATIVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD 122
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
LH + ++SYSER LYESALNR+ E+A + +I EAIN + L K
Sbjct: 123 LH-KNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREK 172
>gi|148272243|ref|YP_001221804.1| putative transcription factor [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830173|emb|CAN01106.1| putative transcription factor [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 164
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 84/159 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG TIT +K + + G+ ++ + + ++ + VPV A +G+R +
Sbjct: 3 FEVGETVVYPHHGAATITAVKTRTIKGVDKKYITLQIHQSELVIDVPVDNAELVGLRDVI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++ VE ++RG + WSRR + K+ SGD+ ++EVVRDL R D S
Sbjct: 63 DSSGVEAVFDVLRGDVEEEAGNWSRRFKANTEKMGSGDVRRVSEVVRDLWRRDQDSGVSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A +V E+A ++ EA +++ L+
Sbjct: 123 GEKRMLSKARQILVSELALAQKSTDEEASVVLDGVLAQS 161
>gi|315605258|ref|ZP_07880304.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon
180 str. F0310]
gi|315313075|gb|EFU61146.1| CarD family transcriptional regulator [Actinomyces sp. oral taxon
180 str. F0310]
Length = 172
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 84/165 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG TI E+ + + G + + + ++ + ++VP +G+R +
Sbjct: 2 SFEIGQTVVYPHHGAATIEEVMTRTIRGEERTYLKLRVNQGDLEIQVPAENVDMVGVRDI 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +E L ++R + T WSRR + KI +GD++ +AEVVRDL R D + S
Sbjct: 62 VDEDGLEEVLSVLRAPYVEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
E+++ A + + E+A +I + A ++ L+ + E
Sbjct: 122 TGEKRMLTKARSILTSELALARNIEKTAAAERLDSVLAEGRIEIE 166
>gi|154508491|ref|ZP_02044133.1| hypothetical protein ACTODO_00992 [Actinomyces odontolyticus ATCC
17982]
gi|293194140|ref|ZP_06609941.1| transcriptional regulator, CarD family [Actinomyces odontolyticus
F0309]
gi|153798125|gb|EDN80545.1| hypothetical protein ACTODO_00992 [Actinomyces odontolyticus ATCC
17982]
gi|292819782|gb|EFF78793.1| transcriptional regulator, CarD family [Actinomyces odontolyticus
F0309]
Length = 172
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 85/171 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG TI E+ + + G + + + ++ + ++VP +G+R +
Sbjct: 2 SFEIGQTVVYPHHGAATIEEVMTRTIRGEERTYLKLRVNQGDLEIQVPAENVDMVGVRDI 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +E L ++R + T WSRR + KI +GD++ +AEVVRDL R D + S
Sbjct: 62 VDEDGLEEVLSVLRAPYIEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
E+++ A + E+A +I + A ++ L+ + E+ E
Sbjct: 122 TGEKRMLTKARGILTSELALARNIEKSAAAERLDAVLAEGRIEVEEDAVEE 172
>gi|296128524|ref|YP_003635774.1| transcriptional regulator, CarD family [Cellulomonas flavigena DSM
20109]
gi|296020339|gb|ADG73575.1| transcriptional regulator, CarD family [Cellulomonas flavigena DSM
20109]
Length = 160
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 81/158 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I EIK + + G + + + + ++VP +G+R +
Sbjct: 3 FTVGETVVYPHHGAAKIEEIKSRTIRGEEKIYLKLKVAHGDLTIEVPAENVDLVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++R +++R + T WSRR + K+ SGD+I +AEVVRDL R D+ S
Sbjct: 63 GQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLQSGDVIKVAEVVRDLSRRDADRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A E +A +++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAEKTEEEKAEAILDEVLAS 160
>gi|78045099|ref|YP_361149.1| CarD family transcriptional regulator [Carboxydothermus
hydrogenoformans Z-2901]
gi|77997214|gb|ABB16113.1| transcriptional regulator, CarD family [Carboxydothermus
hydrogenoformans Z-2901]
Length = 160
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 86/157 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G +VYP HG G I EI+E+ A ++++V++F M L +PV K +G+R +
Sbjct: 1 MFKVGAKVVYPMHGAGIIREIEERLAADRVMKYYVLSFWATNMILWLPVEKVERVGLRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
VE+ +++ + W++R + + KI S D++AIA+VVRDL R + S
Sbjct: 61 IGKDMVEKVFAVLKEGEEKIHSNWNKRYKNHVDKIKSNDILAIADVVRDLRRREKVKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
E++L ESA +V E+ V E + + +IE +
Sbjct: 121 TGEKKLLESARQILVSELILVLEEDEEKVLAMIEEAI 157
>gi|95929125|ref|ZP_01311870.1| transcriptional regulator, CarD family [Desulfuromonas acetoxidans
DSM 684]
gi|95135026|gb|EAT16680.1| transcriptional regulator, CarD family [Desulfuromonas acetoxidans
DSM 684]
Length = 162
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F G+ VYPA GVG I I+ +E +G + +F+V+ M + VP A +GMR L
Sbjct: 3 FSVGDKAVYPAQGVGIIESIETKEFSGEEHDFYVLRICDSDMTIMVPTANAEQVGMRGLV 62
Query: 74 EAHFVERALKLVRGKARV--KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ V++ +++ + + WSRR +EY+ KI SGDL+ +A V+R+L+ + E
Sbjct: 63 DKAHVQKVYDVLQNTDAMAGSISSWSRRQREYNEKIKSGDLLEVAAVLRELYMIGNGKEL 122
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
SY E+++ E A +V+E+A + E + + +E
Sbjct: 123 SYGEKKVLELARRLVVKEVAFAEGVEEDQICSRVEGVF 160
>gi|170781116|ref|YP_001709448.1| hypothetical protein CMS_0684 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155684|emb|CAQ00804.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 164
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 84/159 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG TIT +K + + G+ ++ + + ++ + VPV A +G+R +
Sbjct: 3 FEVGETVVYPHHGAATITAVKTRTIKGVDKKYITLQIHQSELVIDVPVDNAELVGLRDVI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++ VE ++RG + WSRR + K+ SGD+ ++EVVRDL R D S
Sbjct: 63 DSSGVEAVFDVLRGDVEEEAGNWSRRFKANTEKMGSGDVRRVSEVVRDLWRRDQDSGVSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ A +V E+A ++ EA +++ L+
Sbjct: 123 GEKRMLAKARQILVSELALAQKSTDEEASVVLDGVLAQS 161
>gi|189183652|ref|YP_001937437.1| hypothetical protein OTT_0745 [Orientia tsutsugamushi str. Ikeda]
gi|189180423|dbj|BAG40203.1| hypothetical protein OTT_0745 [Orientia tsutsugamushi str. Ikeda]
Length = 169
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/165 (41%), Positives = 107/165 (64%), Gaps = 1/165 (0%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
++ F+ G+ +VYP+HGVG + I+ Q G +L +V++F DKM LKVPV G
Sbjct: 4 QQQEQFKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKSASG 63
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R +S ++ K++ +++ MWSRRAQEY+ KINSGDL +IAEVVRDL+ +++
Sbjct: 64 LRAISYKTDTDKIYKILCSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLY-KNAE 122
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++SYSER +YESA+ R+ RE+A + S+ E I + L +++
Sbjct: 123 VDRSYSERTIYESAITRLARELAILESLKYEEIIEKLTEILKNRN 167
>gi|270284727|ref|ZP_05966557.2| transcriptional regulator [Bifidobacterium gallicum DSM 20093]
gi|270276297|gb|EFA22151.1| transcriptional regulator [Bifidobacterium gallicum DSM 20093]
Length = 198
Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ +AH V + +++R K WSRR + K+ +GD+ IAEVVRDL + D +
Sbjct: 62 IVDAHEVAKVFEILRTPIIEKEMNWSRRYKLNVEKLATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + + EIA + E EA L++VNL S ++ S D+AA
Sbjct: 122 LSAGEKRMLTKARSVLTSEIALSEKLEETEAQRLLDVNLGYSEPLPGDDRHHSFAPDEAA 181
>gi|154487498|ref|ZP_02028905.1| hypothetical protein BIFADO_01353 [Bifidobacterium adolescentis
L2-32]
gi|154084016|gb|EDN83061.1| hypothetical protein BIFADO_01353 [Bifidobacterium adolescentis
L2-32]
Length = 198
Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVGAKEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + + EIA + E EA L++VNL + E +E ++AA
Sbjct: 122 LSAGEKRMLTKARSILTSEIALSEHLDENEAQRLLDVNLGYEAPRPGDEDHHTEAPEEAA 181
>gi|227485949|ref|ZP_03916265.1| transcription factor CarD [Anaerococcus lactolyticus ATCC 51172]
gi|227235994|gb|EEI86009.1| transcription factor CarD [Anaerococcus lactolyticus ATCC 51172]
Length = 160
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 78/157 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G I +++ E G + E++++ +M + +P D +R +
Sbjct: 2 MFKVGDKIVYPMHGAGVIDAVEKIEFMGEEREYYILKMPIGEMDISIPADNMKDANIRFI 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L ++ K + W++R ++ + +GD+ IA++VR+L DS S
Sbjct: 62 ISKEEGLEVLAILDDKPTEMNSNWTKRYRDNQEILKTGDIFEIAKMVRNLAILDSDKGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+E++L A + E+ S+ + EA +I+ ++
Sbjct: 122 TTEKKLLNRARRILASELVMAGSLEKEEAEKMIDESI 158
>gi|227496787|ref|ZP_03927058.1| transcription factor CarD [Actinomyces urogenitalis DSM 15434]
gi|226833703|gb|EEH66086.1| transcription factor CarD [Actinomyces urogenitalis DSM 15434]
Length = 164
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 85/161 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE +VYP HG I +I++++V G + + + + + + VP IG+R +
Sbjct: 3 FEVGETVVYPHHGAARIIDIRQRKVRGEEKTYLQLEVAQGDLTILVPAESVDYIGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+A +E+ ++R + T WSRR + KI SGD+I +AEVVRDL R D+ S
Sbjct: 63 DAAGLEKVFDVLRAPLTEEPTNWSRRFKANQEKIASGDVIKVAEVVRDLSRRDTDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ A +V E+A E A + ++ L+S ++
Sbjct: 123 GEKRMLSKARQILVSELALAEKTEEEAAESKLDEVLASGTA 163
>gi|227495622|ref|ZP_03925938.1| possible transcription factor CarD [Actinomyces coleocanis DSM
15436]
gi|226830854|gb|EEH63237.1| possible transcription factor CarD [Actinomyces coleocanis DSM
15436]
Length = 169
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 75/158 (47%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F GE IVYP HG TI EI +E G K + + + + ++VP +G R +
Sbjct: 3 FHIGETIVYPHHGAATIEEINVREFKGEKRTYLTLRVAQGDLTIQVPADNVEMVGGRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + ++ + + +WSRR ++ KI SG + ++AEVVRDL R D+ S
Sbjct: 63 DEGGFQEVVDILHEDSTDEPAIWSRRYKQNQEKIASGSIRSVAEVVRDLTRRDAVKGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+ + A + E+A I E A ++ L
Sbjct: 123 GEKCMLSKARQILTSEVALARGIDEAAAHICLDEILEE 160
>gi|115378642|ref|ZP_01465793.1| transcriptional regulator, CarD family [Stigmatella aurantiaca
DW4/3-1]
gi|310820620|ref|YP_003952978.1| carD domain-containing protein transcriptional regulator
[Stigmatella aurantiaca DW4/3-1]
gi|115364354|gb|EAU63438.1| transcriptional regulator, CarD family [Stigmatella aurantiaca
DW4/3-1]
gi|309393692|gb|ADO71151.1| Transcriptional regulator, CarD domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 165
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ F+TG+ VYP GVG + I+ EVAG + F+V+ ++ M + +P+ K +G+R
Sbjct: 2 QTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGLVGLR 61
Query: 71 KLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ V++ +++ K V T W+RR +EY KI +G + IAEV+RDL+
Sbjct: 62 EIISEEDVKQVYSILKEKDISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGDK 121
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ S+ ER++ ++A + +++E++ SE E + ++ +
Sbjct: 122 DLSFGERKMLDTARSLLIKELSLAKDCSEEEIESDLKKIFN 162
>gi|254293138|ref|YP_003059161.1| CarD family transcriptional regulator [Hirschia baltica ATCC 49814]
gi|254041669|gb|ACT58464.1| transcriptional regulator, CarD family [Hirschia baltica ATCC
49814]
Length = 171
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 96/168 (57%), Positives = 126/168 (75%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ F +HIVYPAHGVG +T ++ QEVA MKLE +V+AF++DK+ L+VP KA
Sbjct: 4 QAGTGSMFEVEQHIVYPAHGVGRVTAVEVQEVADMKLEVYVVAFEQDKLILRVPTAKAKS 63
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
GMR L+ V A+K + G+AR+KRTMWSRRAQEY+AKINSGDLI+IAEVVRDLHR D
Sbjct: 64 SGMRSLASTKVVGDAIKTLGGRARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAD 123
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
QP++SYSERQLYESAL+RM RE+A V +I EA+ + +L+ +++
Sbjct: 124 DQPDQSYSERQLYESALDRMARELAVVENIEHTEAVARLSQSLAQRAA 171
>gi|119025686|ref|YP_909531.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703]
gi|118765270|dbj|BAF39449.1| possible transcriptional regulator [Bifidobacterium adolescentis
ATCC 15703]
Length = 198
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVGAKEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188
S E+++ A + + EIA + E EA L++VNL + + E +E ++AA
Sbjct: 122 LSAGEKRMLTKARSILTSEIALSEHLDENEAQRLLDVNLGYEPPRPGDEDHHTEAPEEAA 181
>gi|153005358|ref|YP_001379683.1| CarD family transcriptional regulator [Anaeromyxobacter sp.
Fw109-5]
gi|152028931|gb|ABS26699.1| transcriptional regulator, CarD family [Anaeromyxobacter sp.
Fw109-5]
Length = 171
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ VYP GVG + I+ +EVAG + F+V+ ++ M + +P+ K +G+R++
Sbjct: 13 FKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPMNKVGSVGLREII 72
Query: 74 EAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
V R ++R K V T W+RR +EY KI +G + IAEV+RDL+ S + S
Sbjct: 73 GEKDVRRVYTILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLRDLYLLRSDKDLS 132
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ ER++ ++A + +++E+A E + + ++ +
Sbjct: 133 FGERKMLDTARSLLIKELAIAKECGEDDVEDDLKKIFN 170
>gi|227489404|ref|ZP_03919720.1| CarD family transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227540998|ref|ZP_03971047.1| CarD family transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227090582|gb|EEI25894.1| CarD family transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227183258|gb|EEI64230.1| CarD family transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 193
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG + + +++E G +F V+ + ++VPV A +G+R +
Sbjct: 2 EFNVGDIVVYPHHGAAEVAKTEQREHKGEMTDFLVLKILHSDLVVRVPVANAEYVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E+ ++R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VGKEGLEKVFGMLRETDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEA---INLIEVNLSSK-SSKTEKSTSENQDKAA 188
E+++ A +V E+A + + A + L+ + ++ K SE + + A
Sbjct: 122 AGEKRMLAKARQILVGELALAGPVDDKLADDFEARLTEELNRQREARAPKLASELEPEEA 181
>gi|148284672|ref|YP_001248762.1| putative transcriptional factor regulator [Orientia tsutsugamushi
str. Boryong]
gi|146740111|emb|CAM80284.1| putative transcriptional factor regulator [Orientia tsutsugamushi
str. Boryong]
Length = 169
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 68/165 (41%), Positives = 107/165 (64%), Gaps = 1/165 (0%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
++ F+ G+ +VYP+HGVG + I+ Q G +L +V++F DKM LKVPV G
Sbjct: 4 QQQEQFKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKSTSG 63
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R +S ++ K++ +++ MWSRRAQEY+ KINSGDL +IAEVVRDL+ +++
Sbjct: 64 LRAISYKTDTDKIYKILSSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLY-KNAE 122
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++SYSER +YESA+ R+ RE+A + S+ E I + L +++
Sbjct: 123 VDRSYSERIIYESAITRLARELAILESVKYEEIIEKLTEILKNRN 167
>gi|294790738|ref|ZP_06755896.1| transcriptional regulator, CarD family [Scardovia inopinata F0304]
gi|294458635|gb|EFG26988.1| transcriptional regulator, CarD family [Scardovia inopinata F0304]
Length = 219
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG I EI E+ + G+ + + + + VP +G+R+
Sbjct: 2 EYKVGDTVVYPRHGAARIEEISERTLRGVTRTYLRLTVLSSDGLEISVPADSVEKVGVRE 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT-DSQPE 130
+ V + +++R ++T WSRR + KI +GD+ IAEVVRDL + D
Sbjct: 62 IVNGVAVAKVFEILRTPIVEEKTNWSRRYKLNVEKIATGDVNKIAEVVRDLSQRDDDDHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + EIA I + EA L++VNL +K ++ + A
Sbjct: 122 LSAGEKRMLSKARGILTSEIALSEGIDDDEAQRLLDVNLGYQDPEPGDDKHHAKAPQEPA 181
>gi|297243682|ref|ZP_06927613.1| CarD-like transcriptional regulator [Gardnerella vaginalis AMD]
gi|296888433|gb|EFH27174.1| CarD-like transcriptional regulator [Gardnerella vaginalis AMD]
Length = 208
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG + EI E+ V G+ ++ + + + VPV +G+R
Sbjct: 12 EYQVGDMVVYPRHGAARVEEISERTVKGVTRQYLRLVVLSSDGLEINVPVDNVKKVGVRD 71
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ A V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 72 IVGAQEVAKVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHG 131
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188
S E+++ A + ++ EIA I E EA L++VNL K + E + ++ A
Sbjct: 132 LSAGEKRMLARARSILISEIALSEKIDEIEAERLLDVNLGYKEPQKGDENHHTVAPEEPA 191
>gi|149919688|ref|ZP_01908166.1| transcriptional regulator, CarD family protein [Plesiocystis
pacifica SIR-1]
gi|149819459|gb|EDM78889.1| transcriptional regulator, CarD family protein [Plesiocystis
pacifica SIR-1]
Length = 165
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 1/164 (0%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
Q F G VYPAHGV I ++ + V G L F+ + + + VPV KA + G
Sbjct: 2 IAAQRFDIGSTAVYPAHGVADIIGVETKTVGGHDLSFYQLQVRGSGLKIIVPVNKANENG 61
Query: 69 MRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
MR L+ ++R +++R + R W+RR + + KI +G + +AEV RDL S
Sbjct: 62 MRPLAGPDAIDRTFQILRDHDVPIDRQTWNRRYRNFMDKIRAGAIEGVAEVYRDLALLRS 121
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
Q S+ ER++ +A + +V E+A SE E ++ +
Sbjct: 122 QKTLSHGEREMLRTARDLLVGELAVARETSESEVAEELDSMFKN 165
>gi|308274564|emb|CBX31163.1| hypothetical protein N47_E46750 [uncultured Desulfobacterium sp.]
Length = 183
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 2/170 (1%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ F G+ VYPAHGVG I I+ + V G K +F++I ++ M + +P +G+
Sbjct: 14 EVREFHVGDLAVYPAHGVGRIEAIENKIVNGEKHDFYIIKVLENGMVIMIPTWNVDSVGL 73
Query: 70 RKLSEAHFVERALKLVRGK--ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
R + V + ++ K + W+RR ++Y KI +G L +AEV RDL+
Sbjct: 74 RDVISEGEVPKIYDFMKSKKETPIDTQTWNRRYRDYMDKIKTGSLYDVAEVFRDLYLLKL 133
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
+ S+ ER+L+++A +V+E++ + SE + + IE SK + +
Sbjct: 134 TKDLSFGERKLFDTAQTLLVKELSTARNTSEDKIFSEIESLFISKENPKD 183
>gi|116624660|ref|YP_826816.1| CarD family transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116227822|gb|ABJ86531.1| transcriptional regulator, CarD family [Candidatus Solibacter
usitatus Ellin6076]
Length = 170
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 79/159 (49%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP GVG I I + +F+++ F M + VP A +IG+R+++
Sbjct: 4 FQIGDKVVYPNQGVGIIENISIRSFGSAFEKFYLLRFGCSSMTVLVPFSNAANIGLRRVT 63
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + R L + W R +E K+ SGDL+ AEV + L + S+
Sbjct: 64 KDREISRILSYLATGWCPLNPDWKVRFKENTDKMQSGDLLKAAEVFKVLLQLHVDKPLSF 123
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ + A + +V EI+ ++ E A+ L++ L+
Sbjct: 124 REKKMLDRARHMLVSEISIARNVPEIHAVGLMQRALAKA 162
>gi|108760890|ref|YP_630846.1| CarD family transcriptional regulator CdnL [Myxococcus xanthus DK
1622]
gi|108464770|gb|ABF89955.1| transcriptional regulator, CarD family [Myxococcus xanthus DK 1622]
Length = 164
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ F+TG+ VYP GVG + I+ EVAG + F+V+ ++ M + +P+ K +G+R
Sbjct: 2 QTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGLR 61
Query: 71 KLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ V++ +++ K V T W+RR +EY KI +G + IAEV+RDL+
Sbjct: 62 EIISEEDVKQVYSILKEKDISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGDK 121
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ S+ ER++ ++A + +++E++ SE E + ++ +
Sbjct: 122 DLSFGERKMLDTARSLLIKELSLAKDCSEDEIESDLKKIFN 162
>gi|260892305|ref|YP_003238402.1| transcriptional regulator, CarD family [Ammonifex degensii KC4]
gi|260864446|gb|ACX51552.1| transcriptional regulator, CarD family [Ammonifex degensii KC4]
Length = 159
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 51/159 (32%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMRK 71
F+ G+ +VYP HG G I I+E+E+ G K E++V+ F + M + VP+ +IG+R+
Sbjct: 1 MFKVGDKVVYPMHGAGIIEAIEEKEILGQKREYYVLRFPIGNNMKVMVPIDNCQEIGLRR 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + V+ LKL+R W+ R + KI SG++ A+AEVVR+L R + +
Sbjct: 61 VIDKSEVQNVLKLLRSSCTAMPANWNHRYRANLEKIKSGNIYAVAEVVRNLARRERERGL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
S E+++ E+A ++ E+ + E EA L++ +
Sbjct: 121 SSGEKRMLENAKQILISELVLAMEMKEEEARQLLDRAFA 159
>gi|171743211|ref|ZP_02919018.1| hypothetical protein BIFDEN_02339 [Bifidobacterium dentium ATCC
27678]
gi|283455808|ref|YP_003360372.1| CarD family transcriptional regulator [Bifidobacterium dentium Bd1]
gi|306823056|ref|ZP_07456432.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
gi|309801155|ref|ZP_07695284.1| CarD-like protein [Bifidobacterium dentium JCVIHMP022]
gi|171278825|gb|EDT46486.1| hypothetical protein BIFDEN_02339 [Bifidobacterium dentium ATCC
27678]
gi|283102442|gb|ADB09548.1| CarD family transcriptional regulator [Bifidobacterium dentium Bd1]
gi|304553688|gb|EFM41599.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
gi|308222044|gb|EFO78327.1| CarD-like protein [Bifidobacterium dentium JCVIHMP022]
Length = 198
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 GYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ +A+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVDANEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
S E+++ A + + EI+ + E EA L++VNL + ++ +E +AA
Sbjct: 122 LSAGEKRMLTKARSILTSEISLSEHLEEGEAQRLLDVNLGYEAPQPGDDQHHTEAPQEAA 181
>gi|256397245|ref|YP_003118809.1| CarD family transcriptional regulator [Catenulispora acidiphila DSM
44928]
gi|256363471|gb|ACU76968.1| transcriptional regulator, CarD family [Catenulispora acidiphila
DSM 44928]
Length = 160
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 87/158 (55%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ GE +VYP HG I +I+ + + G E+ V+ + + ++VP KA +G+R +
Sbjct: 3 FKVGETVVYPHHGAALIEDIEIRVIKGEPKEYLVLKVAQGDLTVRVPSEKAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +ER ++R + T WSRR + KI SGD+I +AEVVRDL R D S
Sbjct: 63 DQGGLERVFDVLRAPHTEEPTNWSRRYKANIEKIQSGDVIKVAEVVRDLWRRDRDRGLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A + +E +A +++ L+S
Sbjct: 123 GEKRMLAKARQILVSELALAEATNEDKADAILDEVLAS 160
>gi|302390636|ref|YP_003826457.1| transcriptional regulator, CarD family [Thermosediminibacter oceani
DSM 16646]
gi|302201264|gb|ADL08834.1| transcriptional regulator, CarD family [Thermosediminibacter oceani
DSM 16646]
Length = 158
Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 88/157 (56%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I I+E+E+ G K +++V+ M + +P+ +IG+R++
Sbjct: 1 MFNIGDKVVYPMHGAGIIEAIEEKEILGEKQKYYVMRMPFGNMRVMIPINSVKEIGVRQI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ LK++RG+ W+ R + KI SG++ +AEVVR+L + + S
Sbjct: 61 VSDEEIDQVLKILRGEKSKMPANWNHRYRANMEKIKSGNIFQVAEVVRNLGLREKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
ER+++E+A +V EIA +I E A +IE L
Sbjct: 121 AGERRMFENAKQILVSEIALSKNIDEKSAHEMIENAL 157
>gi|332981599|ref|YP_004463040.1| CarD family transcriptional regulator [Mahella australiensis 50-1
BON]
gi|332699277|gb|AEE96218.1| transcriptional regulator, CarD family [Mahella australiensis 50-1
BON]
Length = 162
Score = 124 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +VYP HG G + I+E+E+ G+ +++++ + + +P+ A DIG+R +
Sbjct: 1 MLQIGDKVVYPMHGAGVVEAIEEKEILGVTQKYYILKLPVCDVKIMIPLSSADDIGIRHI 60
Query: 73 SEAHFVERALKLV-RGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ +R L + + T W+RR + KI SGD+ +A+VVR L + Q
Sbjct: 61 IDEDESKRVLAALSQNNQDGDNTNWNRRYRINMDKIKSGDIYEVADVVRSLMIREKQKGL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S ER++ SA +V E+A NS E LIE +
Sbjct: 121 SAGERKMLNSAKQILVSELALANSTGTDEIERLIEERI 158
>gi|38234538|ref|NP_940305.1| putative CarD-like transcriptional factor [Corynebacterium
diphtheriae NCTC 13129]
gi|38200801|emb|CAE50505.1| Putative CarD-like transcriptional factor [Corynebacterium
diphtheriae]
Length = 193
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG I I+ +E+ G LE+ V+ ++ + ++VP A +G+R +
Sbjct: 2 EFKVGDTVVYPHHGAAVIEAIEHREMGGETLEYLVLQINQSDLVVRVPSKNAELVGVRDV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +++ +R + WSRR + ++ SGD+ +AEVVRDL R D S
Sbjct: 62 VDDDGLQKVFGFLRETDVEEAGNWSRRFKANQERLASGDVNKVAEVVRDLWRRDQGKGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184
E+++ A +V E+A + E + E L+ + E+ +EN+
Sbjct: 122 AGEKRMLAKARQVLVGELALAENKDEKQT----EEILAQVDATIERHRAENK 169
>gi|307719573|ref|YP_003875105.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
6192]
gi|306533298|gb|ADN02832.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
6192]
Length = 217
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/165 (31%), Positives = 77/165 (46%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT + F+ +H+VYP GVG + I+E+E G L ++VI M + VP
Sbjct: 1 MTSRNTSAQPEPQFKVHDHVVYPLQGVGEVVRIEEREFKGEGLLYYVIYIPVSDMTVMVP 60
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V KA +IG+R + AL + + T W R Q + G ++ IA VVR
Sbjct: 61 VHKAAEIGIRPIVSREEALEALDFISENPQAGPTDWKTRYQMNLDLLKKGSVMDIARVVR 120
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165
L+ E ER+L+++AL +V EI+ IS E I
Sbjct: 121 ALYYRSKIKELPILERKLFDNALRILVDEISFALEISAKEVEARI 165
>gi|317152592|ref|YP_004120640.1| transcription factor carD [Desulfovibrio aespoeensis Aspo-2]
gi|316942843|gb|ADU61894.1| transcription factor CarD [Desulfovibrio aespoeensis Aspo-2]
Length = 171
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ E +VYP+ GVG + ++ QE+ G+K +F+++ + + L VPV A ++G+R +
Sbjct: 1 MFKVNELVVYPSQGVGRVERVESQEIGGVKADFYIVRILSNNVTLMVPVANAKNVGLRSV 60
Query: 73 SEAHFVERALKLVRGK---ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + ++ + W+RR +EY K+ SGDL +A V+++L
Sbjct: 61 CSLRVGQEIFESLKDRTGFTGYTGQNWNRRYREYSEKLKSGDLSDVAYVLKELFLIGRDK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
E S+ ER+L E A+ + E+A + I + E+
Sbjct: 121 ELSFGERRLLEQAMGLVSMELAYSVDRPQDAVKADINAMFADILEAQEEK 170
>gi|228993464|ref|ZP_04153374.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442]
gi|228999501|ref|ZP_04159079.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17]
gi|229007057|ref|ZP_04164684.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4]
gi|228754206|gb|EEM03624.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4]
gi|228760212|gb|EEM09180.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17]
gi|228766286|gb|EEM14930.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442]
Length = 164
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 85/157 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+++EV G ++ VI M + +P+ K + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEDKEVLGKIRQYCVIHMVISDMQVMIPMDKVENSGIRYVV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + L + W +R K+ +G+L+ AEVVRDL R + + +
Sbjct: 67 DKNTLNDVLVDIHNGEADHSLSWKQRYTMNMEKMKNGNLLDGAEVVRDLIRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A ++ E+A V ++SE +A +++ ++
Sbjct: 127 SEKQMLDNARRILISEVALVQNVSENQATYILQDTIN 163
>gi|28493316|ref|NP_787477.1| transcriptional regulator [Tropheryma whipplei str. Twist]
gi|28572573|ref|NP_789353.1| transcription regulator CarD [Tropheryma whipplei TW08/27]
gi|28410705|emb|CAD67091.1| putative CarD-family transcriptional regulator [Tropheryma whipplei
TW08/27]
gi|28476357|gb|AAO44446.1| transcriptional regulator [Tropheryma whipplei str. Twist]
Length = 160
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 84/159 (52%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG +I EIK++ + G ++ + + + ++VP K +G+R +
Sbjct: 2 QFKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHVSDGDLMIEVPAEKIEAVGLRGV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ R ++++R + T WSRR + KI SGD+ + EVVRDL R + S
Sbjct: 62 IDSDGARRVVEVLRENLVDEPTNWSRRYKSNLEKIASGDVTKVTEVVRDLSRREKTRVLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ A +V E+A ++ +A L++ L+
Sbjct: 122 AGEKRMLTRARGILVAELALARHTNQEDAEALLDEVLAE 160
>gi|227500782|ref|ZP_03930831.1| transcription factor CarD [Anaerococcus tetradius ATCC 35098]
gi|227217087|gb|EEI82445.1| transcription factor CarD [Anaerococcus tetradius ATCC 35098]
Length = 159
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 81/157 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G I I+++E G + ++F++ M + +P K D+ +R +
Sbjct: 1 MFKIGDKIVYPMHGAGIIDSIEKKEFLGEEKDYFILKMPIGDMDISIPTNKINDMNIRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+R LK++ + + W+ R ++ + +GD+ IA++VR+L D S
Sbjct: 61 ISKEEGDRVLKILDDEPSDMSSNWTVRYRQNQEILKTGDIFEIAKMVRNLAILDKDKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+E++L + + E+ S+ + EA +I+ ++
Sbjct: 121 TTEKKLLNRSRRILASELVMAGSLEKEEAEKMIDESI 157
>gi|114328507|ref|YP_745664.1| carD-like transcriptional regulator [Granulibacter bethesdensis
CGDNIH1]
gi|114316681|gb|ABI62741.1| carD-like transcriptional regulator [Granulibacter bethesdensis
CGDNIH1]
Length = 216
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 66/170 (38%), Positives = 104/170 (61%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + F+TG+ +VYP HGVG + + Q+VAG K+E I+F +++M +++P
Sbjct: 17 ATAAQSSPAAKQFKTGDAVVYPGHGVGRVDHVGMQDVAGHKIEMIQISFAENQMTIRLPA 76
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G+RKLS E+A+ + G+ R+ + MWS+RAQEY A+INSGDL+A+AE++RD
Sbjct: 77 AKVATTGLRKLSSKADAEKAIAALSGRPRISKVMWSKRAQEYQARINSGDLLALAELLRD 136
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
L R + S+SERQ++E+AL+R EIA V + + + L
Sbjct: 137 LRRNAGSQDGSFSERQIFETALDRFASEIATVRGEDKADTSQQLIALLIK 186
>gi|282883398|ref|ZP_06291990.1| CarD family transcriptional regulator [Peptoniphilus lacrimalis
315-B]
gi|300813669|ref|ZP_07093991.1| CarD-like protein [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281296754|gb|EFA89258.1| CarD family transcriptional regulator [Peptoniphilus lacrimalis
315-B]
gi|300512211|gb|EFK39389.1| CarD-like protein [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 160
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP HG GTI I+++E+ G K E++V+ +K+ + +PV KA ++G+RK+
Sbjct: 1 MFKIGDKVVYPMHGAGTIVAIEDREILGKKHEYYVLLLPINKLKVMIPVKKADEVGVRKI 60
Query: 73 SEAHFVERALKLVRGKARV-KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
E +E L+++ + + T W+RR + KI SG+LI IA V++ L + DS+
Sbjct: 61 MEISEMEEVLEILSSEEKFKMPTNWNRRYRFNLDKIKSGNLIEIAGVIKSLEKLDSKKSL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S ER++ A ++ E+A V E +++++ +
Sbjct: 121 STGERKILNEARIIIISEMALVFDKDVDEVVSMVDEAI 158
>gi|325478954|gb|EGC82056.1| CarD-like protein [Anaerococcus prevotii ACS-065-V-Col13]
Length = 159
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 78/157 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG GTI I+++E G ++F++ M + +P K D+ +R +
Sbjct: 1 MFKIGDKIVYPMHGAGTIDSIEKKEFLGEVKDYFILKMPIGDMDISIPTSKINDMNIRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ LK++ W+ R ++ + +GD+ IA +VR+L D S
Sbjct: 61 ITKEEGDKVLKILDEDPSDMSENWTTRYRQNQEILKTGDVYEIARMVRNLAILDKDKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+E++L + + E+ S+ + EA +I+ ++
Sbjct: 121 TTEKKLLNRSRRILASELVMAGSLDKEEAEAMIDESI 157
>gi|262277939|ref|ZP_06055732.1| transcriptional regulator, CarD family [alpha proteobacterium
HIMB114]
gi|262225042|gb|EEY75501.1| transcriptional regulator, CarD family [alpha proteobacterium
HIMB114]
Length = 255
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 112/176 (63%), Gaps = 3/176 (1%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
++ ++ ++ ++++YP HG+G I + + +AG++ + I KDK+ L +P +
Sbjct: 82 QETEKRTYKVKDYVIYPKHGIGQIISVDKLTIAGIEASVYKIEITKDKLNLTIPTNQQQ- 140
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+R LS + + +AL +++GKA++KRTMWSRRA EY+ KINSGD+ IAEVVRDL++
Sbjct: 141 -HLRPLSSLNQINKALSILKGKAKIKRTMWSRRAAEYEQKINSGDIYQIAEVVRDLNKNT 199
Query: 127 SQP-EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181
P ++SYSERQL+E A +R++ E++ V ISE E + L K +T + +
Sbjct: 200 DMPVDQSYSERQLFEKAYDRLLGEVSIVLKISEEEGKARLNKALGKKVEETSNTPA 255
>gi|46579983|ref|YP_010791.1| CarD family transcriptional regulator [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602605|ref|YP_967005.1| CarD family transcriptional regulator [Desulfovibrio vulgaris DP4]
gi|46449399|gb|AAS96050.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562834|gb|ABM28578.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris DP4]
gi|311234019|gb|ADP86873.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris
RCH1]
Length = 171
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 3/168 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F E +VYPA GVG + I+ QEV G+ EF+++ + + L VPV A ++G+R L
Sbjct: 1 MFSPDELVVYPAQGVGKVERIERQEVGGVTAEFYIVRILTNNVTLMVPVKNAANVGLRPL 60
Query: 73 SEAHFVERALKLVRGK---ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + + W+RR +EY K+ S DL +A V+R+L
Sbjct: 61 CSTERANEIMLSLEDRSGFTGYTGQNWNRRYREYSEKLKSPDLGDVAYVLRELLLIGKDK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
E S+ ER+L E A++ +V E++ V +++ E IE E
Sbjct: 121 ELSFGERRLLEQAMSLLVVELSHVQGLTQEEVRANIEALFQDVLQPRE 168
>gi|289178764|gb|ADC86010.1| CarD-like transcriptional regulator [Bifidobacterium animalis
subsp. lactis BB-12]
Length = 223
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-CLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + EI ++ V G+ E+ ++ + VPV +G+R
Sbjct: 27 GYKVGDMVVYPRHGAARVEEILQRTVKGVTREYLKLSVLSSDDLEIFVPVDNLKKVGVRD 86
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ + V R +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 87 IVDGDEVSRVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHG 146
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188
S E+++ A + + EIA +SE E L++VNL + + +E ++ A
Sbjct: 147 LSAGEKRMLTKARSILTSEIALSEELSEEETQRLLDVNLGYAEPQEGDAEHHTEVPEEPA 206
>gi|284043149|ref|YP_003393489.1| transcriptional regulator, CarD family [Conexibacter woesei DSM
14684]
gi|283947370|gb|ADB50114.1| transcriptional regulator, CarD family [Conexibacter woesei DSM
14684]
Length = 171
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 84/161 (52%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+++VYP HG G + + +++E+ G E+ I + M + VP A G+R++
Sbjct: 2 EFEIGDNVVYPHHGAGKVLKKEDKEILGETREYLTIKILHNDMTVMVPTANAAVAGLRRV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ V++ L +++ + W+RR + KI +GD+ +AEVVR+L +++ S
Sbjct: 62 IDEETVKKVLAVLQDECSDMPKNWNRRFKHNRDKIKTGDIYELAEVVRNLAIREAEKGLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+Q++ A + E+ + E +A ++ L++ +
Sbjct: 122 TGEKQMFTRAKKILASELMYALEMEEEQAEEHLDELLAASA 162
>gi|77917722|ref|YP_355537.1| putative transcriptional regulator [Pelobacter carbinolicus DSM
2380]
gi|77543805|gb|ABA87367.1| transcriptional regulator, CarD family [Pelobacter carbinolicus DSM
2380]
Length = 161
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ VYPA GVG I I+ +E G K++F+V+ M + +PV +GMR L
Sbjct: 1 MFKIGDMAVYPAQGVGVIEAIESKEFVGQKMDFYVLRIVDSDMTIMIPVNNVDSVGMRSL 60
Query: 73 SEAHFVERALKLVRGKARVKRT--MWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ V +++ K + + WSRR ++Y+ KI SGD+ +AEV+R+L+ E
Sbjct: 61 IDKDRVRTVYDILKDKTQNQGNLASWSRRQRDYNEKIRSGDVFEVAEVLRELYMIREDKE 120
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
SY E+++ E A +V+EIA + E + + +E
Sbjct: 121 LSYGEKKVLELARKLVVKEIALADGKDEQQVTDRVES 157
>gi|302390930|ref|YP_003826750.1| CarD family transcriptional regulator [Acetohalobium arabaticum DSM
5501]
gi|302203007|gb|ADL11685.1| transcriptional regulator, CarD family [Acetohalobium arabaticum
DSM 5501]
Length = 169
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 81/141 (57%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F TG+ IVYP HG GTIT+I+++EV G +++V+ +M + +P+ DIG+R++
Sbjct: 1 MFETGDKIVYPNHGAGTITDIEKKEVLGETKKYYVMQLPIGEMRVMIPMDNVDDIGIREV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ V+ ++++G+ W+RR + KI SGD+ +AEVVR+L D + S
Sbjct: 61 ISSDRVDDVFQILKGEKSEMSQNWNRRYRANTEKIKSGDIFEVAEVVRNLTLRDIEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAV 153
E+++ ++ ++ E+
Sbjct: 121 TGEKKMLSNSRQILISELVLA 141
>gi|229158326|ref|ZP_04286393.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342]
gi|228625284|gb|EEK82044.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342]
Length = 164
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTMN 163
>gi|94264420|ref|ZP_01288210.1| Transcription factor CarD [delta proteobacterium MLMS-1]
gi|93455177|gb|EAT05395.1| Transcription factor CarD [delta proteobacterium MLMS-1]
Length = 166
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 1/165 (0%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
D F+ G+ VYPAHGVG I I+ ++V ++ F+VI + M + +P ++
Sbjct: 2 DVALDTFQVGDMAVYPAHGVGRIESIESRQVGELEQSFYVIRIVESNMTVMIPTKSCNNV 61
Query: 68 GMRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G+R + V++ ++ + + W++R +EY +I +G + IA V+RDL
Sbjct: 62 GLRNIICPGDVKQVFAILGERGLEMVSQPWNQRYREYTNRIKTGSVFEIAAVLRDLLLLR 121
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ E S+ ER++ E+A +++EIA E + I+ SS
Sbjct: 122 ADKELSFGERKMVETARGLLIKEIALATDNDEEQVAQRIDRIFSS 166
>gi|320354570|ref|YP_004195909.1| CarD family transcriptional regulator [Desulfobulbus propionicus
DSM 2032]
gi|320123072|gb|ADW18618.1| transcriptional regulator, CarD family [Desulfobulbus propionicus
DSM 2032]
Length = 159
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 83/156 (53%), Gaps = 1/156 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ VYPAHGVG I IK Q + G+ F+V+ + M + +P + ++G+R +
Sbjct: 1 MFSKGDMAVYPAHGVGLIEAIKTQSIGGIDQSFYVMKILDNDMTIMIPTATSANVGLRAI 60
Query: 73 SEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V + + +++ + ++ W+RR +EY KI +G + +A V+RDL +
Sbjct: 61 ISGEDVPKVIDILKERDIKITAQTWNRRYREYMEKIKTGSVFEVAVVLRDLFLLKEDKDL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
SY ER++ ++A N +V+E++ + E IE
Sbjct: 121 SYGERKMLDTAKNLLVKELSLAKQMEEGMIEQQIEK 156
>gi|324328612|gb|ADY23872.1| transcriptional regulator, CarD family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 159
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 82/158 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 1 MFQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 61 VDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 121 ASEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 158
>gi|330994677|ref|ZP_08318600.1| hypothetical protein SXCC_04565 [Gluconacetobacter sp. SXCC-1]
gi|329758318|gb|EGG74839.1| hypothetical protein SXCC_04565 [Gluconacetobacter sp. SXCC-1]
Length = 196
Score = 121 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 68/170 (40%), Positives = 99/170 (58%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
K FR G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+
Sbjct: 27 KSSKAVKDEDPFREGDAIVYAAHGVGRVDRIGVDEIAGTKLEMIQISFPGNQMTLRIPLS 86
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
KA G+RK+ V++A+ +++GK V R MW+RRA Y KINSGDL+ IAEV+RDL
Sbjct: 87 KARKSGLRKIVSREIVDKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDL 146
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
R + S+SER+L+E+A R V E+A + E + + + +
Sbjct: 147 RRNVDSLDGSFSERKLFEAAQERFVAEVAVLEGKDPTEVLEKLTEVMKAA 196
>gi|47565141|ref|ZP_00236184.1| CarD-like transcriptional regulator [Bacillus cereus G9241]
gi|47557927|gb|EAL16252.1| CarD-like transcriptional regulator [Bacillus cereus G9241]
Length = 162
Score = 121 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 5 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 64
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 65 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 124
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 125 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 161
>gi|301056223|ref|YP_003794434.1| CarD-like transcriptional regulator [Bacillus anthracis CI]
gi|300378392|gb|ADK07296.1| CarD-like transcriptional regulator [Bacillus cereus biovar
anthracis str. CI]
Length = 159
Score = 121 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 82/158 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 1 MFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 61 VDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 121 ASEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTMN 158
>gi|257065690|ref|YP_003151946.1| transcriptional regulator, CarD family [Anaerococcus prevotii DSM
20548]
gi|256797570|gb|ACV28225.1| transcriptional regulator, CarD family [Anaerococcus prevotii DSM
20548]
Length = 159
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 79/157 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG GTI I+++E G ++F++ M + +P K ++ +R +
Sbjct: 1 MFKIGDKIVYPMHGAGTIDSIEKKEFLGEVKDYFILKMPIGDMDISIPTSKINEMNIRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ LK++ W+ R ++ + +GD+ IA++VR+L D+ S
Sbjct: 61 ITKEEGDEVLKILDDDPSDMSNNWTVRYRQNQEILKTGDIFEIAKMVRNLAILDNDKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+E++L + + E+ S+ + EA +I+ ++
Sbjct: 121 TTEKKLLNRSRRILASELVMAGSLKKEEAEAMIDESI 157
>gi|304321707|ref|YP_003855350.1| transcriptional regulator [Parvularcula bermudensis HTCC2503]
gi|303300609|gb|ADM10208.1| transcriptional regulator [Parvularcula bermudensis HTCC2503]
Length = 308
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 91/169 (53%), Positives = 119/169 (70%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q F+ I+YPAHGVG I ++++Q + ++E FVI F+ +KM L+VPV KA GM
Sbjct: 140 KNQKFKVNTQIIYPAHGVGNIVDLEKQTIGDFEVELFVIDFEHEKMKLRVPVAKAAASGM 199
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
R LS ++ AL+L+ G+ARVKRTMWSRRAQEY+AKINSGDL+++AEVVRDL R D QP
Sbjct: 200 RNLSTTEQIDDALELLEGRARVKRTMWSRRAQEYEAKINSGDLVSVAEVVRDLFRADDQP 259
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
E+SYSERQL+E A R RE+AAV S +AI+ I ++L K K
Sbjct: 260 EQSYSERQLFEQARERFGREVAAVRKKSLEKAIDEIHIHLDRKEKVEAK 308
>gi|332970720|gb|EGK09700.1| CarD family transcriptional regulator [Desmospora sp. 8437]
Length = 168
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 1/168 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I I+E+E+ G ++V+ M + +P+ K IG+R++
Sbjct: 1 MFNIGDKVVYPMHGAGIIEAIEEKEILGESQRYYVMRMPVGDMKVMIPMSKVDSIGLREV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + ++ + + + W+RR + K+ SGD+ +A+VVR L D + S
Sbjct: 61 VDEKTISEVIERLANGSAEVSSNWNRRYRANLDKMKSGDIHDLADVVRCLMLRDKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV-NLSSKSSKTEKS 179
ER++ ++A ++ E+ + E +A L++ LS + E++
Sbjct: 121 TGERKMLDNARQILISELVLAKEMEESQAFGLLDEIILSESKPRVERA 168
>gi|229175432|ref|ZP_04302945.1| Transcriptional regulator, CarD [Bacillus cereus MM3]
gi|228608040|gb|EEK65349.1| Transcriptional regulator, CarD [Bacillus cereus MM3]
Length = 164
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQIMLPMDQLQKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DKGTLDGILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQDTIN 163
>gi|212696984|ref|ZP_03305112.1| hypothetical protein ANHYDRO_01547 [Anaerococcus hydrogenalis DSM
7454]
gi|212676072|gb|EEB35679.1| hypothetical protein ANHYDRO_01547 [Anaerococcus hydrogenalis DSM
7454]
Length = 159
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 75/157 (47%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G I ++ +E G + E+F++ M + +P + +R +
Sbjct: 1 MFKIGDKIVYPMHGAGIIDSVETKEFLGEEKEYFILKMPIGNMDISIPKSNINKMNIRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E+ L ++ K W+ R +E + +GD+ IA +VRDL D S
Sbjct: 61 ISKEEGEKILAILDEKPEDLNGNWNLRYRENQEILKTGDIFKIANMVRDLVALDDDKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+E++L A M E+ S+ + +A +I+ ++
Sbjct: 121 TTEKKLLNRARRIMASELVMSGSLEKDQAEKMIDESI 157
>gi|42783903|ref|NP_981150.1| CarD family transcriptional regulator [Bacillus cereus ATCC 10987]
gi|206977288|ref|ZP_03238185.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97]
gi|217962204|ref|YP_002340774.1| transcriptional regulator, CarD family [Bacillus cereus AH187]
gi|228987970|ref|ZP_04148076.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229141451|ref|ZP_04269988.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26]
gi|42739833|gb|AAS43758.1| transcriptional regulator, CarD family [Bacillus cereus ATCC 10987]
gi|206744439|gb|EDZ55849.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97]
gi|217066173|gb|ACJ80423.1| transcriptional regulator, CarD family [Bacillus cereus AH187]
gi|228642014|gb|EEK98308.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26]
gi|228771774|gb|EEM20234.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 164
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 163
>gi|49481535|ref|YP_038761.1| CarD family transcriptional regulator [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|118479850|ref|YP_897001.1| CarD family transcriptional regulator [Bacillus thuringiensis str.
Al Hakam]
gi|196032819|ref|ZP_03100232.1| transcriptional regulator, CarD family [Bacillus cereus W]
gi|196040853|ref|ZP_03108151.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99]
gi|196043838|ref|ZP_03111075.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108]
gi|218905945|ref|YP_002453779.1| transcriptional regulator, CarD family [Bacillus cereus AH820]
gi|225866704|ref|YP_002752082.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102]
gi|228929769|ref|ZP_04092786.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228936026|ref|ZP_04098836.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948465|ref|ZP_04110747.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093818|ref|ZP_04224917.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42]
gi|229124284|ref|ZP_04253475.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201]
gi|229186972|ref|ZP_04314126.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1]
gi|49333091|gb|AAT63737.1| transcriptional regulator, CarD family [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|118419075|gb|ABK87494.1| transcriptional regulator, CarD family [Bacillus thuringiensis str.
Al Hakam]
gi|195994248|gb|EDX58203.1| transcriptional regulator, CarD family [Bacillus cereus W]
gi|196025174|gb|EDX63844.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108]
gi|196028307|gb|EDX66916.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99]
gi|218538565|gb|ACK90963.1| transcriptional regulator, CarD family [Bacillus cereus AH820]
gi|225788519|gb|ACO28736.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102]
gi|228596526|gb|EEK54192.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1]
gi|228659185|gb|EEL14834.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201]
gi|228689703|gb|EEL43511.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42]
gi|228811224|gb|EEM57563.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823794|gb|EEM69616.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228829948|gb|EEM75568.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 164
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTMN 163
>gi|297587316|ref|ZP_06945961.1| CarD family transcriptional regulator [Finegoldia magna ATCC 53516]
gi|297575297|gb|EFH94016.1| CarD family transcriptional regulator [Finegoldia magna ATCC 53516]
Length = 160
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 86/158 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G ITE++ +EV G+K +++++ +M + +PV K D+G+R +
Sbjct: 1 MFKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYYILQMPMGEMKISIPVDKINDMGIRFV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ + +++ + W++R +E K+ +GD+ A V + L+ D S
Sbjct: 61 AQEEIIHSLRDILKNSEVDFPSNWNKRYKENLEKLRTGDIKETAIVYKGLYELDCSKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ ++ ++ EIA+ +I +A +++ +
Sbjct: 121 MIEKKVLNTSRKMLISEIASGLNIKPSKAESMVNELID 158
>gi|157692393|ref|YP_001486855.1| transcription factor CarD [Bacillus pumilus SAFR-032]
gi|157681151|gb|ABV62295.1| possible transcription factor CarD [Bacillus pumilus SAFR-032]
Length = 158
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G I ++E+E+ G E+F+I M + +P G+ +G+R +
Sbjct: 1 MFQIGDKIVYPMHGAGVIEGMEEKEILGKTEEYFLIQMP--NMQMMIPRGRINQLGIRPV 58
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + W +R E K+ +G + A+VV+DL R + + +
Sbjct: 59 ADQATLKVVMNNFAEETNDDTLTWKQRYDENLKKLKTGAIEDGADVVKDLMRRNQKKALN 118
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
SE+++ E A +V EI+ +S+ E ++ +E L
Sbjct: 119 SSEKKMLEDARGMLVSEISLAQGLSQDEVLSALENEL 155
>gi|325845929|ref|ZP_08169127.1| CarD-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481835|gb|EGC84867.1| CarD-like protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 159
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 75/157 (47%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G I ++ +E G + E+F++ M + +P + +R +
Sbjct: 1 MFKIGDKIVYPMHGAGVIDSVETKEFLGEEKEYFILKMPIGNMDISIPKSNINKMNIRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E+ L ++ K W+ R +E + +GD+ IA +VRDL D S
Sbjct: 61 ISKEEGEKILAILDEKPEDLNGNWNLRYRENQEILKTGDIFKIANMVRDLVALDDDKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+E++L A M E+ S+ + +A +I+ ++
Sbjct: 121 TTEKKLLNRARRIMASELVMSGSLEKDQAEKMIDESI 157
>gi|258404969|ref|YP_003197711.1| transcriptional regulator, CarD family [Desulfohalobium retbaense
DSM 5692]
gi|257797196|gb|ACV68133.1| transcriptional regulator, CarD family [Desulfohalobium retbaense
DSM 5692]
Length = 174
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 3/173 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + +VYPA GVG + I+ QE+ G + +F+++ + + L VPV A ++G+R +
Sbjct: 1 MFSEKQLVVYPAQGVGEVERIESQEIGGTRADFYIVRILSNNVTLMVPVANAENVGLRSV 60
Query: 73 SEAHFVERALKLVRGKARVK---RTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
A L+ ++ ++ W+RR +EY K+ SG+L ++ V+++L
Sbjct: 61 CGADEGRLVLEGLKDRSDFMGYSGQNWNRRYREYSEKLKSGELDDVSYVLKELILIGRDK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSE 182
E S+ ER+L E A+ + EIA + IE + + +
Sbjct: 121 ELSFGERRLLEQAMTLITMEIAYALGTQQDAVRKEIEEIFADILKRPGADEED 173
>gi|302342168|ref|YP_003806697.1| CarD family transcriptional regulator [Desulfarculus baarsii DSM
2075]
gi|301638781|gb|ADK84103.1| transcriptional regulator, CarD family [Desulfarculus baarsii DSM
2075]
Length = 161
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 1/158 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ VYPAHGVG I ++E+ + G + F+++ ++ M + VP A +G+R +
Sbjct: 1 MFDLGQLAVYPAHGVGRIEAVEEKTIGGAQQCFYILRILENDMIIMVPTANAGAVGLRPI 60
Query: 73 SEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V + L ++R ++ W+RR ++Y +KI +G + +AEV+RDL S E
Sbjct: 61 IPTEEVPQVLSILRDHDVIIENQTWNRRYRDYMSKIKTGSVYEVAEVLRDLFILKSDKEL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S+ ER++ ++A N +V+E++ +E +E
Sbjct: 121 SFGERKMLDTARNLLVKELSIAQQQTEDVVAAQVEGIF 158
>gi|52140791|ref|YP_086042.1| CarD family transcriptional regulator [Bacillus cereus E33L]
gi|222098186|ref|YP_002532243.1| transcriptional regulator, card family [Bacillus cereus Q1]
gi|228917367|ref|ZP_04080920.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229032373|ref|ZP_04188344.1| Transcriptional regulator, CarD [Bacillus cereus AH1271]
gi|229198880|ref|ZP_04325571.1| Transcriptional regulator, CarD [Bacillus cereus m1293]
gi|51974260|gb|AAU15810.1| transcriptional regulator, CarD family [Bacillus cereus E33L]
gi|221242244|gb|ACM14954.1| transcriptional regulator, CarD family [Bacillus cereus Q1]
gi|228584583|gb|EEK42710.1| Transcriptional regulator, CarD [Bacillus cereus m1293]
gi|228728936|gb|EEL79941.1| Transcriptional regulator, CarD [Bacillus cereus AH1271]
gi|228842294|gb|EEM87389.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 164
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 163
>gi|291456490|ref|ZP_06595880.1| transcriptional regulator, CarD family [Bifidobacterium breve DSM
20213]
gi|291381767|gb|EFE89285.1| transcriptional regulator, CarD family [Bifidobacterium breve DSM
20213]
Length = 197
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
++ G+ +VYP HG + I E+ V G+ E+ ++ + + VPV A +G+R
Sbjct: 2 SYQVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVENAKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ V + +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVSGSEVAKVFEILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
S E+++ A + EIA I E EA L++VNL ++
Sbjct: 122 LSAGEKRMLTKARAILTSEIALSEKIDETEAQRLLDVNLGYAPAQ 166
>gi|218885594|ref|YP_002434915.1| CarD family transcriptional regulator [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756548|gb|ACL07447.1| transcriptional regulator, CarD family [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 171
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 3/171 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + +VYPA GVG + ++ Q V G+ +F+++ + + L VPV A ++G+R L
Sbjct: 1 MFAQDQLVVYPAQGVGKVERVESQVVGGVATDFYIVRILGNNVTLMVPVRNAANVGLRSL 60
Query: 73 SEAHFVERALKLVRGK---ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
L+ +R + W+RR +EY K+ SGDL +A V+R+L
Sbjct: 61 CAPELGAEILESLRDRSGFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLRELLLIGRDK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
E S+ ER+L E A+ + E+A V ++ IE EKS
Sbjct: 121 ELSFGERRLLEQAMGLITLELACVLDRTQDNVRAEIEEMFQDVLQAREKSE 171
>gi|299144435|ref|ZP_07037515.1| transcriptional regulator, CarD family [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518920|gb|EFI42659.1| transcriptional regulator, CarD family [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 161
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 1/156 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G I I+++E+ G +++++ + M + VPV A ++G+R++
Sbjct: 1 MFDIGDKVVYPMHGAGVIVAIEDREILGEIRKYYILKMPINDMKVMVPVENADEVGVREI 60
Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + L+++ + W+RR + +I SG++ IA+VVR L R DS+
Sbjct: 61 LDEDKMNLVLEVLSCNEITNMPKNWNRRYRFNMDRIKSGNIEEIAKVVRCLERLDSKKSL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
S ER++ A +V E+ V + S E L++
Sbjct: 121 STGERKMLNGAKQIIVSEMVLVYNKSVEEITELVDK 156
>gi|115372710|ref|ZP_01460016.1| hmga-type transcription factor [Stigmatella aurantiaca DW4/3-1]
gi|115370191|gb|EAU69120.1| hmga-type transcription factor [Stigmatella aurantiaca DW4/3-1]
Length = 361
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 85/174 (48%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +VYP GV I+ I+ +EVAG KL F + ++D + VP K IG+
Sbjct: 38 EGLQLSVGDRVVYPNQGVCLISAIEVKEVAGQKLTFVTMRREEDGAVVMVPQAKVQAIGV 97
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RK++ VE+ +R + W +RA+ ++ G ++ +AEVV+ L
Sbjct: 98 RKVAGPAEVEQIYAFLRSDSDKADLDWKQRARTNLDRMTQGGILGLAEVVKGLQVLSELR 157
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
ER+LY++A + +V E+AA SI E A + I++ L + K T
Sbjct: 158 PLPTKERELYDNARHLLVTEVAAALSIPEVNAEDSIDIVLFPPGKERPKRTVAE 211
>gi|258591297|emb|CBE67594.1| CarD-like transcriptional regulator [NC10 bacterium 'Dutch
sediment']
Length = 162
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 81/156 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+RTG +VYP HGVG I I+ +EV G F+V+ + M + VP A +G+R++
Sbjct: 2 MYRTGTKVVYPTHGVGWIEAIENKEVGGGPQAFYVVRIIGNGMTILVPTKNAKRVGLREV 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
EA + + L +++ + W+RR ++ +I +G L +A V+R L + S
Sbjct: 62 IEASEIPKILAILKKNDLEISSNWNRRFKDNLERIRTGSLFEVALVLRKLVLLQKERSLS 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
+ E+ + E+ +V EI+ + I + A L+E
Sbjct: 122 FGEKTMLENVRRLIVSEISHASGIDQERAKVLVEQA 157
>gi|51246583|ref|YP_066467.1| transcription factor [Desulfotalea psychrophila LSv54]
gi|50877620|emb|CAG37460.1| related to transcription factor [Desulfotalea psychrophila LSv54]
Length = 165
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 1/158 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F G+ VYPAHGVG I ++ Q VAG F+V+ + M + +P + +G+R +
Sbjct: 8 FVAGDMAVYPAHGVGVIKSVETQTVAGTDQSFYVMEIMGNNMTIMIPTASSEKVGLRAIV 67
Query: 74 EAHFVERALKLVRGKARV-KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
V + ++ + W+RR ++Y KI +G + +A V+RDL + S
Sbjct: 68 SEEQVSEVVTILEDRDVELGSQTWNRRYRDYMEKIKTGSVHEVAAVLRDLFLLSVDKDLS 127
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
Y ER++ ++A +V+E++ I E + I+ S
Sbjct: 128 YGERKMLDTAKGLLVKELSLAKKIEEVAMSDQIDAIFS 165
>gi|295394468|ref|ZP_06804691.1| CarD family transcriptional regulator [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972647|gb|EFG48499.1| CarD family transcriptional regulator [Brevibacterium mcbrellneri
ATCC 49030]
Length = 175
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 73/144 (50%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
++R + F+ G+ +VYP HG TI EIK + + G + + + ++VP
Sbjct: 9 RERGKNKMSFQVGDTVVYPHHGAATIQEIKTRTIKGEDKLYLKLQVSHGDLTIEVPAENC 68
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
+G+R + +E+ +++R + + T WSRR + K SGD+I +AEVVRDL R
Sbjct: 69 DLVGVRDVVGEEGLEKVFQVLRAEVTEEPTNWSRRYKANLEKFQSGDVIKVAEVVRDLWR 128
Query: 125 TDSQPEKSYSERQLYESALNRMVR 148
+ S E+++ A +V
Sbjct: 129 REQDRGLSTGEKRMLAKARQVLVS 152
>gi|328950177|ref|YP_004367512.1| transcriptional regulator, CarD family [Marinithermus
hydrothermalis DSM 14884]
gi|328450501|gb|AEB11402.1| transcriptional regulator, CarD family [Marinithermus
hydrothermalis DSM 14884]
Length = 163
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 1/164 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYPA G G I E+ E+EV G + +++V+ D + VPVG + G+R
Sbjct: 1 MFQVGDAVVYPAQGAGRIVEVVEREVMGSRKQYYVVQLLSDAARIMVPVGAVREAGLRPP 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
A +ER + + ++W R +E + SGD +A +V L+R D +
Sbjct: 61 LAAAELERLWQALAE-DLPLPSVWMPRYREEQRLLASGDPFKLAALVGTLYRRDQAKPLA 119
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
SER+LYE AL + E+A S + A + L + +
Sbjct: 120 SSERRLYEDALTALASEVALSLSETLEAAKARVMGMLEALTPSP 163
>gi|325474975|gb|EGC78161.1| transcriptional regulator [Treponema denticola F0402]
Length = 209
Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 81/170 (47%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + F E +VYP GVGTIT+I ++E+AG ++++VI M + VP+ ++G
Sbjct: 2 SKKFVFSAKEVVVYPGQGVGTITDITKKEIAGEVIDYYVIYLSDSDMTVLVPITGIDNLG 61
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R++ E ALK + W R Q SG ++ VVR L++
Sbjct: 62 IRRIVTKAEAEAALKFLSEDFEPIPIDWKARYQMNMDLFKSGKILDTGSVVRSLYQRSKT 121
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
E ER+LY+SA EIAA +++ E I ++L EK
Sbjct: 122 KELPIQERKLYDSAYRIFQDEIAAALKMTKTEVEAAIHLHLEPLGGPIEK 171
>gi|42527792|ref|NP_972890.1| transcriptional regulator, putative [Treponema denticola ATCC
35405]
gi|41818620|gb|AAS12809.1| transcriptional regulator, putative [Treponema denticola ATCC
35405]
Length = 208
Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 81/170 (47%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + F E +VYP GVGTIT+I ++E+AG ++++VI M + VP+ ++G
Sbjct: 2 SKKFVFSAKEVVVYPGQGVGTITDITKKEIAGEVIDYYVIYLSDSDMTVLVPITGIDNLG 61
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R++ E ALK + W R Q SG ++ VVR L++
Sbjct: 62 IRRIVTKAEAEAALKFLSEDFEPIPIDWKARYQMNMDLFKSGKILDTGSVVRSLYQRSKT 121
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
E ER+LY+SA EIAA +++ E I ++L EK
Sbjct: 122 KELPIQERKLYDSAYRIFQDEIAAALKMTKTEVEAAIHLHLEPLGGPIEK 171
>gi|262197699|ref|YP_003268908.1| CarD family transcriptional regulator [Haliangium ochraceum DSM
14365]
gi|262081046|gb|ACY17015.1| transcriptional regulator, CarD family [Haliangium ochraceum DSM
14365]
Length = 162
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ VYPA GV + I+ +E+ F+V+ +M + VP KA +G+R +
Sbjct: 3 EFSIGDKAVYPAQGVAEVVGIENKEINSTICSFYVLKVLDTEMQILVPKDKADQVGLRPV 62
Query: 73 SEAHFVERALKLVRGKARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ VE ++R + W+RR + + KI +G L +AEV RDL+R S
Sbjct: 63 ASDEEVEEVFDILREQDIHIDKQTWNRRYRGFMEKIKTGSLFEVAEVFRDLYRLKSTKTL 122
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
S+ ER++ ++A N +V+E+A + E +E ++
Sbjct: 123 SFGERRMLDTAKNLIVKELAVARNWDEQRVEKELEKAFAA 162
>gi|283853058|ref|ZP_06370314.1| transcriptional regulator, CarD family [Desulfovibrio sp. FW1012B]
gi|283571525|gb|EFC19529.1| transcriptional regulator, CarD family [Desulfovibrio sp. FW1012B]
Length = 170
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + +VYPA GVG + I+ Q + G +FF++ + + L VPV A ++G+R L
Sbjct: 1 MFSEEQLVVYPAQGVGRVERIETQVIGGASADFFIVRILSNNVTLMVPVKNAANVGLRPL 60
Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
A + ++ ++ ++ W+RR +EY K+ SGDL +A V+++L
Sbjct: 61 CTAEEGQAIIETLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLGDVAYVLKELLLIGQNK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK-SSKTEK 178
E S+ ER+L E A + + E+A + E ++I + K E+
Sbjct: 121 ELSFGERRLLEQATSLLTLELALAMDKEQQEIKDIINEIFADVLQPKPEE 170
>gi|310826140|ref|YP_003958497.1| transcriptional regulator [Eubacterium limosum KIST612]
gi|308737874|gb|ADO35534.1| transcriptional regulator [Eubacterium limosum KIST612]
Length = 157
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 86/157 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IVYP HG G + +I+E+E+ ++++ + M + +PV KA ++G+R +
Sbjct: 1 MYEIGDKIVYPMHGAGVVKDIEEKEIFDTTQMYYLMEIVSEGMEILIPVDKADEVGVRDI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +E+ L + + WS+R Q+ + SGD+ +A+VV++L D + S
Sbjct: 61 VTSDVIEKMLDSLEEPSDQMNGNWSKRYQDNMDILKSGDIFDVAKVVKNLTLLDRKKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
E+++ SA N ++ E+ V S+ E++ +IE +
Sbjct: 121 TGEKKMLTSARNFLISEMVLVQGRSKEESLQVIEEKI 157
>gi|313887993|ref|ZP_07821671.1| CarD-like protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845948|gb|EFR33331.1| CarD-like protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 160
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ IVYP HG G I I+E+E+ G +++++ + + + VPV A +IG+R +
Sbjct: 1 MFNIGDKIVYPMHGAGEIVAIEEREILGDVHKYYIMRLPINDLKVMVPVKNAKEIGVRDI 60
Query: 73 SEAHFVERALKLV-RGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+A +E+ LK + + W+RR + KI SGDL+ IA+VVR L D +
Sbjct: 61 SDADTMEKVLKALSSEEEVSMPKNWNRRYRYNLDKIKSGDLMEIADVVRSLESLDREKSL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S ER++ A +V E+ V + E LI+ +
Sbjct: 121 STGERKILNEAKQIIVSEMVLVFEKNVEEVTKLIDDAI 158
>gi|183601479|ref|ZP_02962849.1| possible transcriptional regulator [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683979|ref|YP_002470362.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191021|ref|YP_002968415.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196427|ref|YP_002969982.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|183219085|gb|EDT89726.1| possible transcriptional regulator [Bifidobacterium animalis subsp.
lactis HN019]
gi|219621629|gb|ACL29786.1| possible transcriptional regulator [Bifidobacterium animalis subsp.
lactis AD011]
gi|240249413|gb|ACS46353.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250981|gb|ACS47920.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|295794010|gb|ADG33545.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
V9]
Length = 198
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 4/180 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM-CLKVPVGKAIDIGMRK 71
G++ G+ +VYP HG + EI ++ V G+ E+ ++ + VPV +G+R
Sbjct: 2 GYKVGDMVVYPRHGAARVEEILQRTVKGVTREYLKLSVLSSDDLEIFVPVDNLKKVGVRD 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPE 130
+ + V R +++R K WSRR + KI +GD+ IAEVVRDL + D +
Sbjct: 62 IVDGDEVSRVFEILRTPIVEKEMNWSRRYKLNVEKIATGDVNNIAEVVRDLSQRDVDEHG 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT--EKSTSENQDKAA 188
S E+++ A + + EIA +SE E L++VNL + + +E ++ A
Sbjct: 122 LSAGEKRMLTKARSILTSEIALSEELSEEETQRLLDVNLGYAEPQEGDAEHHTEVPEEPA 181
>gi|162449975|ref|YP_001612342.1| putative transcription factor [Sorangium cellulosum 'So ce 56']
gi|161160557|emb|CAN91862.1| putative transcription factor [Sorangium cellulosum 'So ce 56']
Length = 168
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 1/164 (0%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ F+ G+ VYPA GV + I+E+++AG + F+V+ + VPV A
Sbjct: 2 QARSEIQFKVGDKAVYPAQGVAEVVNIEEKDIAGNRQRFYVLRILDTDRKIMVPVSNASA 61
Query: 67 IGMRKLSEAHFVERALKLVRGKAR-VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+G+R++ + ++R + W+RR + + KI +G + +AEV+RDL+R
Sbjct: 62 VGLRQVISEQEIREIFDILRERTIAFDNQTWNRRYRGFMDKIKTGSIYDVAEVLRDLYRL 121
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + S+ ER++ ++A +V+EIA +E + IE
Sbjct: 122 KTDKQLSFGERRMLDTARTLIVKEIAIARGQTEEQVKTEIEAIF 165
>gi|256546065|ref|ZP_05473418.1| CarD family transcriptional regulator [Anaerococcus vaginalis ATCC
51170]
gi|256398182|gb|EEU11806.1| CarD family transcriptional regulator [Anaerococcus vaginalis ATCC
51170]
Length = 159
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 75/157 (47%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G I ++ +E G + E+F++ M + +P + +R +
Sbjct: 1 MFKIGDKIVYPMHGAGIIDSVETKEFLGEEKEYFILKMPIGNMDISIPKANINKMNIRDV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E L ++ + + W+ R +E + +GD+ IA +VRDL D S
Sbjct: 61 ISKKEGEEILAILEQDPKDLNSNWNLRYRENQEILKTGDIFKIANMVRDLVALDDDKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+E++L A M E+ S+ + +A +I+ ++
Sbjct: 121 TTEKKLLNRARRIMASELVMSGSLEKDDAEKMIDESI 157
>gi|302379533|ref|ZP_07268018.1| CarD-like protein [Finegoldia magna ACS-171-V-Col3]
gi|302312440|gb|EFK94436.1| CarD-like protein [Finegoldia magna ACS-171-V-Col3]
Length = 160
Score = 117 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 87/158 (55%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G ITE++ +EV G+K ++F++ +M + +PV K D+G+R +
Sbjct: 1 MFKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYFILKMPMGEMKISIPVDKINDMGIRFV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E + +++ + + W++R +E K+ GD+ A V + L+ DS S
Sbjct: 61 AEEEIIHSLRDILKNQEVDFPSNWNQRYKENLEKLRIGDIKETAVVYKGLYELDSSKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ ++ ++ EIA+ ++ EA +++ +
Sbjct: 121 MIEKKVLNTSRKMLISEIASGLNLKPSEAESMVNDLID 158
>gi|319790303|ref|YP_004151936.1| transcriptional regulator, CarD family [Thermovibrio ammonificans
HB-1]
gi|317114805|gb|ADU97295.1| transcriptional regulator, CarD family [Thermovibrio ammonificans
HB-1]
Length = 163
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ + YP HGVG I + + V G ++ ++ I M + +P G+R +
Sbjct: 1 MFKVGDKVAYPPHGVGVIESTEVRVVGGKEVTYYRITLLGKNMSILIPEVGLESSGVRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E + K W+ R + ++ +G++ +A VVR+L E S
Sbjct: 61 LSEEEIEEVFSYLAEKPTNISEKWTIRHRLNVDRLKTGNIRELATVVRNLSYRSKDKELS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YSE++++E A +++ EIA + I L
Sbjct: 121 YSEKRMFEEAFSKLAEEIALSLGEPVRKVKQRIRKILKEAQK 162
>gi|169824929|ref|YP_001692540.1| CarD family transcriptional regulator [Finegoldia magna ATCC 29328]
gi|167831734|dbj|BAG08650.1| transcriptional regulator CarD family [Finegoldia magna ATCC 29328]
Length = 160
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 87/158 (55%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G ITE++ +EV G+K ++F++ +M + +PV K D+G+R +
Sbjct: 1 MFKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYFILKMPMGEMKISIPVDKINDMGIRFV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E + +++ + + W++R +E K+ GD+ A V + L+ DS S
Sbjct: 61 AEEEIIHSLRDILKNQEVDFPSNWNQRYKENLEKLRIGDIKETAIVYKGLYELDSSKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ ++ ++ EIA+ ++ EA +++ +
Sbjct: 121 MIEKKVLNTSRKMLISEIASGLNLKPSEAESMVNDLID 158
>gi|258542109|ref|YP_003187542.1| CarD family transcriptional regulator [Acetobacter pasteurianus IFO
3283-01]
gi|256633187|dbj|BAH99162.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO
3283-01]
gi|256636244|dbj|BAI02213.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO
3283-03]
gi|256639299|dbj|BAI05261.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO
3283-07]
gi|256642353|dbj|BAI08308.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO
3283-22]
gi|256645408|dbj|BAI11356.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO
3283-26]
gi|256648463|dbj|BAI14404.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO
3283-32]
gi|256651516|dbj|BAI17450.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654507|dbj|BAI20434.1| transcriptional regulator CarD [Acetobacter pasteurianus IFO
3283-12]
Length = 196
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/166 (39%), Positives = 99/166 (59%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ F G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA
Sbjct: 31 KVKDEDPFEEGDAIVYAAHGVGRVDRIGVDEIAGTKLEVIQISFPGNQMTLRIPLSKARK 90
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G+RK+ V++A+ +++GK V + MW+RRA Y KINSGDL+ IAEV+RDL R
Sbjct: 91 AGLRKIVSREIVDKAMAIIKGKPHVSKGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNV 150
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ S+SER+L+E+A R V E+A + + E + + + +
Sbjct: 151 DSLDGSFSERKLFEAAQERFVAEVAVLENKDPTEVLESLTAVMKAA 196
>gi|146296815|ref|YP_001180586.1| CarD family transcriptional regulator [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410391|gb|ABP67395.1| transcriptional regulator, CarD family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 173
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
++ ++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R
Sbjct: 4 QRMYKVGDTIIHPLHGAGEIVEIVEEKVFDNVQKYYVVRILYNGMKILVPVNSAAEIGIR 63
Query: 71 KLSEAHFVERALKLVRG----KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + +L++ +++R +E K+ SG++ + EV++ L +
Sbjct: 64 NVISEEEANKVFELLKDNNFKVDINNCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAARE 123
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S +E+ ++ +A +V E+ + E +++ L
Sbjct: 124 KVKGLSTNEKMMFNNAKQILVSELGLAKGLDMEEVEKMVDSIL 166
>gi|85859811|ref|YP_462013.1| carD-like transcriptional regulator [Syntrophus aciditrophicus SB]
gi|85722902|gb|ABC77845.1| carD-like transcriptional regulator [Syntrophus aciditrophicus SB]
Length = 161
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ VYPA GVG I I+ +EV G +F+++ + M + +P G A +G+R+L
Sbjct: 1 MFKVGDLAVYPAQGVGVIEAIESREVMGSTQKFYIMKIMSNGMKIMIPTGSAESVGLREL 60
Query: 73 SEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V + ++++ K + + W++R +EY KI +G + IA V+RDL +
Sbjct: 61 ILEDDVPKVYEILKNKDITIDKQTWNKRYREYLEKIKTGSVFEIARVLRDLLILKNDKNL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
S+ ER++ ++A + +++EI+ ++ E + ++ S
Sbjct: 121 SFGERKMMDTAKSLLIKEISIASNAEETKIEQDLKTIFS 159
>gi|297624760|ref|YP_003706194.1| CarD family transcriptional regulator [Truepera radiovictrix DSM
17093]
gi|297165940|gb|ADI15651.1| transcriptional regulator, CarD family [Truepera radiovictrix DSM
17093]
Length = 165
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 78/160 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+++VYP+ G G + EI + V G + E+ I+F + M + VP+ K ++G+R
Sbjct: 1 MFKVGDNVVYPSQGAGRVDEITTRVVLGERHEYLKISFVRGDMDVLVPLKKGEEVGLRHT 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
V L + T W R + + GD A+A ++ L + D + +
Sbjct: 61 VALAEVGELLAAIAHSDLSLPTQWPPRHRAEQDILAGGDAYALARLIGVLAQRDLEKGLA 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ER++ E A + E+A V SIS A I+ ++++
Sbjct: 121 ATEREMLEGAKAMLASELAVVQSISLEAAHAQIDETIATQ 160
>gi|225620858|ref|YP_002722116.1| transcriptional regulator [Brachyspira hyodysenteriae WA1]
gi|225215678|gb|ACN84412.1| Transcriptional regulator [Brachyspira hyodysenteriae WA1]
Length = 194
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ ++VYP +G+ + I + +V +E +V+ + + + LKVP+ + + +RK+
Sbjct: 1 MYKLNTYVVYPMYGICKVVGISDNKVNSNLVECYVLECESENITLKVPINRVKEYRIRKI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L +++ K W R QE + K+ SGD+ EV R L + E S
Sbjct: 61 ISKAEADNLLNILQTKPHDIENNWKIRYQENEEKLRSGDIKDTIEVARSLFTRNKLKELS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
SE++LYE A +V EI+ E +++ L + K +
Sbjct: 121 ASEKRLYEKAYMFIVNEISIALKKDRDEIEDIVSNALEKSAKKFKTKP 168
>gi|296116291|ref|ZP_06834907.1| transcriptional regulator, CarD family protein [Gluconacetobacter
hansenii ATCC 23769]
gi|295977110|gb|EFG83872.1| transcriptional regulator, CarD family protein [Gluconacetobacter
hansenii ATCC 23769]
Length = 196
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 67/170 (39%), Positives = 99/170 (58%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
K + FR G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+
Sbjct: 27 KSSKPEKDEDPFREGDAIVYAAHGVGRVDRIGIDEIAGTKLEMIQISFPGNQMTLRIPLS 86
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
KA G+RK+ V++A+ +++GK V R MW+RRA Y KINSGDL+ IAEV+RDL
Sbjct: 87 KARKSGLRKIVSREIVDKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDL 146
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
R + S+SER+L+E+A R V E+A + + + + +
Sbjct: 147 RRNVDSLDGSFSERKLFEAAQERFVAEVAVLEGKEPAIVLETLTAVMKAA 196
>gi|326333885|ref|ZP_08200118.1| transcription-repair coupling factor [Nocardioidaceae bacterium
Broad-1]
gi|325948467|gb|EGD40574.1| transcription-repair coupling factor [Nocardioidaceae bacterium
Broad-1]
Length = 1198
Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++K+ + G+++V+ HGVG E+K++EV G E+ V+ + P
Sbjct: 508 MPARRKKQIDPLELKPGDYVVHEQHGVGQFIEMKQREVQGATREYLVLEY--GASKRGAP 565
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
R A +++ + V G+ + Q+ A+ AE+++
Sbjct: 566 PD-------RLYVPADALDQVTRYVGGEQPSLDRLGGADWQKRKARARKAVREIAAELIK 618
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y ++ + + + I+ ++ ++
Sbjct: 619 LYAARQATKGFQYGPDNPWQR---ELEDAFPFQETADQLAVIDEVKQDMMRPVP 669
>gi|303234185|ref|ZP_07320831.1| CarD-like protein [Finegoldia magna BVS033A4]
gi|302494726|gb|EFL54486.1| CarD-like protein [Finegoldia magna BVS033A4]
Length = 160
Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 85/158 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G ITE++ +EV G+K ++F++ +M + +PV K D+G+R +
Sbjct: 1 MFKIGDKIVYPMHGAGIITEVQNKEVLGVKKDYFILKMPMGEMKISIPVDKINDMGIRFV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E + +++ + + W++R + K+ GD+ A V + L+ DS S
Sbjct: 61 AEEEIIHSLRDILKNQEVDFPSNWNQRYKGNLEKLRIGDIKETAVVYKGLYELDSSKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+++ ++ ++ EIA+ ++ EA ++ +
Sbjct: 121 MIEKKVLNTSRKMLISEIASGLNLKPSEAEKMVNDLID 158
>gi|284048085|ref|YP_003398424.1| transcriptional regulator, CarD family [Acidaminococcus fermentans
DSM 20731]
gi|283952306|gb|ADB47109.1| transcriptional regulator, CarD family [Acidaminococcus fermentans
DSM 20731]
Length = 159
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ ++YP HG I ++++++ G + +FV+ M + +P IG+R +
Sbjct: 1 MFTVGDKVLYPMHGAAVIKNVEQKQIDGHPVNYFVLKMLLSDMKVLIPEVNVDKIGLRPI 60
Query: 73 SEAHFVERALKLVRGKA--RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ + +++ + ++KR W+RR Y K+ +GD+ +A+VVR L +++ +
Sbjct: 61 VNKAILPKVEDVLKARPENKMKRITWNRRYNMYVDKMKTGDIFEVADVVRTLAVQETEKK 120
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
S ER+L +A ++ E V S+ E ++ ++
Sbjct: 121 LSAGERRLLTTAKQILLSEFMLVESVDEEKSEKWLDQ 157
>gi|162147634|ref|YP_001602095.1| CarD family transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|209542263|ref|YP_002274492.1| CarD family transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786211|emb|CAP55793.1| Transcriptional regulator, CarD family [Gluconacetobacter
diazotrophicus PAl 5]
gi|209529940|gb|ACI49877.1| transcriptional regulator, CarD family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 196
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/166 (39%), Positives = 98/166 (59%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ FR G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA
Sbjct: 31 KVKDEDPFREGDAIVYAAHGVGRVDRIGIDEIAGTKLEMIQISFPGNQMTLRIPLAKARK 90
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G+RK+ V++A+ +++GK V R MW+RRA Y KINSGDL+ IAEV+RDL R
Sbjct: 91 AGLRKIVSREIVDKAMAIIKGKPHVSRGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNV 150
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ S+SER+L+E+A R V E+A + + + + +
Sbjct: 151 DSLDGSFSERKLFEAAQERFVAEVAVLEGKEPTAVLEALTAAMKAA 196
>gi|329114138|ref|ZP_08242900.1| Transcriptional Regulator CarD Family [Acetobacter pomorum DM001]
gi|326696214|gb|EGE47893.1| Transcriptional Regulator CarD Family [Acetobacter pomorum DM001]
Length = 196
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 65/166 (39%), Positives = 98/166 (59%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ F G+ IVY AHGVG + I E+AG KLE I+F ++M L++P+ KA
Sbjct: 31 KVKDEDPFEEGDAIVYAAHGVGRVDRIGVDEIAGTKLEVIQISFPGNQMTLRIPLSKARK 90
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G+RK+ V++A+ +++GK V + MW+RRA Y KINSGDL+ IAEV+RDL R
Sbjct: 91 AGLRKIVSREIVDKAMAIIKGKPHVSKGMWARRAVAYQEKINSGDLVQIAEVLRDLRRNV 150
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ S+SER+L+E+A R V E+A + E + + + +
Sbjct: 151 DSLDGSFSERKLFEAAQERFVAEVAVLEKKDPTEVLESLTAVMKAA 196
>gi|330813497|ref|YP_004357736.1| carD-like transcriptional regulator [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486592|gb|AEA80997.1| carD-like transcriptional regulator [Candidatus Pelagibacter sp.
IMCC9063]
Length = 273
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+K+D ++ ++ ++++YP HG+G IT +++ +AG+ + F+ I KDK+ L +P
Sbjct: 98 KIKKQDNEKRTYKIKDYVIYPKHGIGQITAVEKDTIAGIDINFYKIEITKDKLVLTIPTN 157
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+R LS V +A+ +++GKA+VKRTMWSRRAQEY+ KINSG++ IAEVVRDL
Sbjct: 158 --QQGHLRSLSSTGQVAKAISILKGKAKVKRTMWSRRAQEYEQKINSGEIYQIAEVVRDL 215
Query: 123 HRTDSQP-EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
++ P ++SYSERQL+E A R++ E+ V +E EA + L K +
Sbjct: 216 NKNTDMPVDQSYSERQLFEKAFERLLGEVTVVLEATEEEAKEKLNKALGKKPEQA 270
>gi|320538285|ref|ZP_08038170.1| CarD-like transcriptional regulator [Treponema phagedenis F0421]
gi|320144861|gb|EFW36592.1| CarD-like transcriptional regulator [Treponema phagedenis F0421]
Length = 205
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 76/163 (46%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + F + +VYP GVG ITEI ++E L+++VI + M + VPV +A ++G
Sbjct: 2 SKKFTFAVNQKVVYPGQGVGEITEICKKEFKEEMLQYYVIYLEDSDMTMMVPVMRAEELG 61
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R + E AL + + W R Q SG ++ + +VR L+
Sbjct: 62 IRTIVSKKDAESALDFLSKEVEQGPLDWKMRYQMNLDLFKSGGVLDNSTIVRSLYHRSKI 121
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E ER+LY+SA EI+A + + E +LI L
Sbjct: 122 KELPIQERKLYDSAYRIFEDEISAALGLPQNEIKSLIHTYLEK 164
>gi|58040444|ref|YP_192408.1| transcriptional regulator [Gluconobacter oxydans 621H]
gi|58002858|gb|AAW61752.1| Transcriptional regulator [Gluconobacter oxydans 621H]
Length = 184
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 99/159 (62%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
FR G+ IVY AHGVG + +I EVA +E I+F ++M L++P+ KA G+RK+
Sbjct: 26 FREGDSIVYAAHGVGRVDKIGMVEVADTVIEMIQISFPGNQMTLRIPLAKARKAGLRKIV 85
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
V++A+ +++GK V + MW+RRA Y KINSGDLI IAEV+RDL R + S+
Sbjct: 86 TRDIVDKAMTVIKGKPHVSKGMWARRAVAYQEKINSGDLIQIAEVLRDLRRNVDSLDGSF 145
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
SER+L+E+A R V E+A + ++ + + + + +
Sbjct: 146 SERKLFEAAQERFVAEVAVLENVDPAQVLENLTKTMKAA 184
>gi|300870668|ref|YP_003785539.1| CarD family transcriptional regulator [Brachyspira pilosicoli
95/1000]
gi|300688367|gb|ADK31038.1| transcriptional regulator, CarD family [Brachyspira pilosicoli
95/1000]
Length = 191
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 82/172 (47%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ ++VYP +G+ + I + +V +E +V+ + + + LKVP+ + + +RK+
Sbjct: 1 MYKVNSYVVYPMYGICKVIGIADNKVNSSVVECYVLECEGENITLKVPINRVKEYRIRKI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E L L++ K W R QE + K+ SG++ EV R L + E S
Sbjct: 61 ISKAEAENFLNLLQTKPHDIENNWKIRYQENEEKLRSGEIKDTIEVARSLFTRNKLKELS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQ 184
SE++LYE A +V EI+ + +++ L + K + +E +
Sbjct: 121 ASEKRLYEKAYMFIVNEISIALKKDRDQIEDIVSNALEKSAKKFKTKPAEKE 172
>gi|194014646|ref|ZP_03053263.1| transcriptional regulator, CarD family [Bacillus pumilus ATCC 7061]
gi|194013672|gb|EDW23237.1| transcriptional regulator, CarD family [Bacillus pumilus ATCC 7061]
Length = 157
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G IVYP HG G I ++E+E+ G E+F+I M + +P G+ +G+R++
Sbjct: 1 MFQIGNKIVYPMHGAGVIEGMEEKEILGKTEEYFLIQMP--NMQMMIPRGRINQLGIRQV 58
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + W +R E K+ +G + A+VV+DL R + + +
Sbjct: 59 ADQATLKVVMNNFAEETNDDTLTWKQRYDENMKKLKTGAIEDGADVVKDLMRRNQKKALN 118
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
SE+++ E A +V EI+ +S+ E ++ +E L
Sbjct: 119 SSEKKMLEDARGMLVSEISLAQGLSQDEVLSALENEL 155
>gi|297568584|ref|YP_003689928.1| transcriptional regulator, CarD family [Desulfurivibrio
alkaliphilus AHT2]
gi|296924499|gb|ADH85309.1| transcriptional regulator, CarD family [Desulfurivibrio
alkaliphilus AHT2]
Length = 165
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 1/164 (0%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
A + FR G+ VYPAHGVG I I+ ++V ++ F+V+ F + M + +P +
Sbjct: 2 SATLEMFRVGDMAVYPAHGVGKIESIESRKVGELEQSFYVMRFIESNMTVMIPTTTCDTV 61
Query: 68 GMRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G+R + A V++ ++ + + W++R +EY KI +G + IA V+RDL
Sbjct: 62 GLRNIISADDVQQVFAILNQRDVETESQPWNQRYREYTNKIKTGSIFEIAAVLRDLLLLR 121
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ S+ ER++ ++A +V+EIA I E + I+ S
Sbjct: 122 GDKDLSFGERKMVDTAKTLLVKEIALAKQIQEEQVAEHIDRIFS 165
>gi|303327050|ref|ZP_07357492.1| transcriptional regulator, CarD family [Desulfovibrio sp. 3_1_syn3]
gi|302863038|gb|EFL85970.1| transcriptional regulator, CarD family [Desulfovibrio sp. 3_1_syn3]
Length = 171
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + +VYPA GVG I I Q + G+ EF+++ + + L VPV A ++G+R L
Sbjct: 1 MFAPDDLVVYPAQGVGKIERIDRQNIGGIACEFYIVRIRANNITLMVPVNNAANVGLRTL 60
Query: 73 SEAHFVERALKLVRG---KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + L+ +RG K W+RR +EY ++ S DL + EV+R+L
Sbjct: 61 TPEADAQGILETLRGDTDKTIYTGQNWNRRFREYSERLKSPDLAVVTEVLRELLLISRSK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
E S+ ER+L E A+ + E+A V ++E +
Sbjct: 121 ELSFGERRLQEQAMGLVTGELAEVLHLTEDSLREELLE 158
>gi|315501932|ref|YP_004080819.1| transcription-repair coupling factor [Micromonospora sp. L5]
gi|315408551|gb|ADU06668.1| transcription-repair coupling factor [Micromonospora sp. L5]
Length = 1218
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+ +V+ HG+G E+ ++ V G E+ V ++
Sbjct: 517 MPSRRRNTIDPLELKAGDFVVHEQHGIGRYVELVQRTVNGASREYLV---------IEYA 567
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ M Q+ A+ A++++
Sbjct: 568 PSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLHKMGGSDWQKSKARARKAVREIAAQLIQ 627
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + + + AI ++ ++
Sbjct: 628 LYAARKASKGHNFGPDTPWQR---ELEDAFPWQETPDQLAAIEEVKRDMEQTVP 678
>gi|302865387|ref|YP_003834024.1| transcription-repair coupling factor [Micromonospora aurantiaca
ATCC 27029]
gi|302568246|gb|ADL44448.1| transcription-repair coupling factor [Micromonospora aurantiaca
ATCC 27029]
Length = 1218
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+ +V+ HG+G E+ ++ V G E+ V ++
Sbjct: 517 MPSRRRNTIDPLELKAGDFVVHEQHGIGRYVELVQRTVNGASREYLV---------IEYA 567
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ M Q+ A+ A++++
Sbjct: 568 PSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLHKMGGSDWQKSKARARKAVREIAAQLIQ 627
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + + + AI ++ ++
Sbjct: 628 LYAARKASKGHNFGPDTPWQR---ELEDAFPWQETPDQLAAIEEVKRDMEQTVP 678
>gi|301167408|emb|CBW26990.1| putative transcriptional regulator [Bacteriovorax marinus SJ]
Length = 176
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
F G++ V P HGVG + +I+E+EV G KL F++I + M + VP G
Sbjct: 16 TEVTMFNIGDYAVCPGHGVGQVCDIEEKEVGGDKLSFYIIKIIANGMTVMVPTNSEN--G 73
Query: 69 MRKLSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
+R+L + +L++ V + W+RR +EY KI +G L+ IA+V+R L +
Sbjct: 74 IRELVGNEEINEVYELLQDHDVEVDNSTWNRRYREYMTKIKTGSLLEIADVLRALFLLRA 133
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ S+ E+++ E + + +EI+ N E I+ +
Sbjct: 134 KKNLSFGEKKMLEQCRDLLAQEISLSNGNDTKEISTTIDDYFN 176
>gi|42782726|ref|NP_979973.1| CarD family transcriptional regulator [Bacillus cereus ATCC 10987]
gi|42738652|gb|AAS42581.1| transcriptional regulator, CarD family [Bacillus cereus ATCC 10987]
Length = 158
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP HG G I I+E+E+AG K +++VI M L +P G+ + +R ++
Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEIAGEKQQYYVIKMLGSNMELMIPAGRILSSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + L + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITAIAHILDVFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITESQIKSF 157
>gi|257456307|ref|ZP_05621504.1| transcription factor [Treponema vincentii ATCC 35580]
gi|257446393|gb|EEV21439.1| transcription factor [Treponema vincentii ATCC 35580]
Length = 198
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 2/175 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F E +VYP GVG I EI E++ L ++VI FD+ M + VP KA ++G+R +
Sbjct: 5 SFTVKERVVYPGQGVGEIVEISEKKFKDEMLTYYVIYFDESDMTVLVPAMKAAELGIRTI 64
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
A + AL + K + W R Q +G ++ A +VR L+ E
Sbjct: 65 VSADEAQAALAFLSEKFDPIPSDWKMRYQMNLDLFKTGSILDNASIVRSLYHRSKIKELP 124
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS--SKSSKTEKSTSENQD 185
ER+LY+SA E++ + E +I L SK++ K + D
Sbjct: 125 IQERKLYDSAYRIFYDELSYALQKPKSEIEAMIHSYLEVLSKNAPAGKQEQLDDD 179
>gi|328952413|ref|YP_004369747.1| transcriptional regulator, CarD family [Desulfobacca acetoxidans
DSM 11109]
gi|328452737|gb|AEB08566.1| transcriptional regulator, CarD family [Desulfobacca acetoxidans
DSM 11109]
Length = 169
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ VYPAHGVG I I+++E++G F+++ + M + +P A ++G+R +
Sbjct: 1 MFQLGDLAVYPAHGVGVIESIEDKEISGNHQTFYIMRILDNNMIIMIPTHNASNVGLRGI 60
Query: 73 SEAHFVERALKLVRGKARVKRTM-WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ V +++ K RV W+RR ++Y KI +G L +AEV+RDL +
Sbjct: 61 IDGQAVTTIYEILAKKDRVVEHQTWNRRYRDYMEKIKTGSLFHVAEVLRDLTLLKLDKDL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
S+ ER++ ++A N +V+E++ E + I L
Sbjct: 121 SFGERKMLDTAKNLLVKELSIAEKKEEDKIEQKINSLLE 159
>gi|256828487|ref|YP_003157215.1| CarD family transcriptional regulator [Desulfomicrobium baculatum
DSM 4028]
gi|256577663|gb|ACU88799.1| transcriptional regulator, CarD family [Desulfomicrobium baculatum
DSM 4028]
Length = 176
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 7/176 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F E +VYPA GVG + I+ QE+ G+ E ++ + + L VPV A ++G+R +
Sbjct: 1 MFSVDELVVYPAQGVGKVERIETQEIGGVATELIIVRILSNNVTLMVPVKNARNVGLRGV 60
Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ + W+RR +EY K+ S DL +A V+++L
Sbjct: 61 YTPEQADEIRVYLQDRTDFTGYSGQNWNRRYREYSEKLKSSDLRDVAYVLKELILIGKDK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE----VNLSSKSSKTEKSTS 181
E S+ ER+L E A+ + E++ + E IE L +K ++ E
Sbjct: 121 ELSFGERRLLEQAMGLISLELSFALKQDQAEVKKSIEDLFADILHAKDAENEAEVD 176
>gi|134301075|ref|YP_001114571.1| CarD family transcriptional regulator [Desulfotomaculum reducens
MI-1]
gi|134053775|gb|ABO51746.1| transcriptional regulator, CarD family [Desulfotomaculum reducens
MI-1]
Length = 155
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ + YP HG G I I+E+E+ G K ++V+ M + P DI +R +
Sbjct: 1 MFQIGDKVFYPMHGAGVIEAIEEKEILGNKQLYYVMQI--RNMQVMFP--MKSDIPLRPV 56
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ +A ++R + K+ SGD+ +V+RDL + +
Sbjct: 57 VDLDILDVLFTTFNEEALDLTLKPNQRYRSNMNKMKSGDIYQGVQVIRDLILMSKKRTLA 116
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
++ + ++AL ++ E+ V I+E +A++L+ ++
Sbjct: 117 TGDKAMLDNALQILISELVLVKGITEEQAVDLVNGVIN 154
>gi|296126550|ref|YP_003633802.1| CarD family transcriptional regulator [Brachyspira murdochii DSM
12563]
gi|296018366|gb|ADG71603.1| transcriptional regulator, CarD family [Brachyspira murdochii DSM
12563]
Length = 191
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 83/173 (47%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ ++VYP +G+ + I + +V +E +V+ + + + LKVP+ + + +RK+
Sbjct: 1 MYKLNTYVVYPMYGICKVIGISDSKVNSNLVECYVLECESENITLKVPINRVKEYRIRKI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + +++ K + W R QE + K+ SG++ EV R L + E S
Sbjct: 61 ISKAEADELINVLQTKPQDIENNWKIRYQENEEKLRSGNIKDTIEVARSLFTRNKLKELS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQD 185
SE++LYE A +V EI+ + E +++ L + K + E +
Sbjct: 121 ASEKRLYEKAYMFIVNEISIALKKDKDEIEDIVSNALEKSAKKFKTKPLEKEK 173
>gi|325294895|ref|YP_004281409.1| transcriptional regulator, CarD family [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065343|gb|ADY73350.1| transcriptional regulator, CarD family [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 163
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 72/158 (45%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ + P HGVG + +E+EV G K+ +F I+ M + VP + G+R +
Sbjct: 1 MFKIGDKVACPPHGVGIVEGKEEREVGGKKVIYFRISLVGKSMSILVPEESIENSGIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E + W+ R + ++ +GD+ +A VVR+L + E S
Sbjct: 61 LSEESIEEIFNYLSEIPTNISEKWTVRHRLNVDRLKTGDIKELATVVRNLSYRSKEKELS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
YSE++++E A ++ EIA + I L
Sbjct: 121 YSEKRMFEEAFGKLAEEIALSLGEPVKKVKQKIRKILK 158
>gi|75761918|ref|ZP_00741841.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74490589|gb|EAO53882.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 167
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 80/151 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ + +R ++
Sbjct: 16 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRISNSNIRPVT 75
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 76 DITALVHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 135
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 136 SEKKMLDNAYEFLISELGLIEGITENQIKSF 166
>gi|258540716|ref|YP_003175215.1| transcription-repair coupling factor [Lactobacillus rhamnosus Lc
705]
gi|257152392|emb|CAR91364.1| Transcription-repair coupling factor [Lactobacillus rhamnosus Lc
705]
Length = 1175
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G T ++ EV G+ + ++ ++ L +PV + +
Sbjct: 494 ELKPGDYVVHVNHGIGQYTGMETLEVDGVHRD-YITIVYRNNDKLFIPVDQLNLVQKYVS 552
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + Q+ K+ + E++ + +++ +
Sbjct: 553 A------------DGKTPNVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYA 600
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + E + + + I+ ++
Sbjct: 601 FGPDDDLQ---QKFEDEFPYPETPDQLRSAKEIKRDMEKPKP 639
>gi|89096669|ref|ZP_01169561.1| transcriptional regulator, CarD family protein [Bacillus sp. NRRL
B-14911]
gi|89088684|gb|EAR67793.1| transcriptional regulator, CarD family protein [Bacillus sp. NRRL
B-14911]
Length = 160
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 82/151 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ +++VYP HGVG I I+E+EV G K +++VI M + +P GK ++ G+R ++
Sbjct: 9 FQIDDNVVYPMHGVGIIKAIEEKEVLGEKQQYYVIKMLVGNMEVMIPAGKIVNSGIRPVT 68
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ +++ + + + + W +R + KI +G + EVVRDL R + +
Sbjct: 69 DIIALKQLMNIFQNGETDRLLPWKQRFKVNTDKIKTGKIQECTEVVRDLMRMKKEKALNT 128
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SERQ+ +A ++ E+ + I+E + +
Sbjct: 129 SERQMLNNAHEILISELGLMKGITENQIKSF 159
>gi|78357172|ref|YP_388621.1| CarD family transcriptional regulator [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219577|gb|ABB38926.1| transcriptional regulator, CarD family [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 171
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 3/171 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + +VYPA GVG + ++ Q V G + EF+++ + + L VPV A+++G+R L
Sbjct: 1 MFVPDQLVVYPAQGVGKVERLESQVVGGAEAEFYIVRILSNNVTLMVPVKNAVNVGLRAL 60
Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
A ++ L ++ ++ W+RR +EY K+ SG L +A V+++L
Sbjct: 61 CSAEEGQKILDSLQDRSDFTGYTGQNWNRRYREYSEKLKSGSLEDVAYVLKELLLIGKDK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
E S+ ER+L E ++ + E+A ++ + IEV E
Sbjct: 121 ELSFGERRLLEQSMGLITLELAHALDTTQEDVKARIEVFFEDVLHPEENPE 171
>gi|312135061|ref|YP_004002399.1| CarD family transcriptional regulator [Caldicellulosiruptor
owensensis OL]
gi|311775112|gb|ADQ04599.1| transcriptional regulator, CarD family [Caldicellulosiruptor
owensensis OL]
Length = 168
Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R +
Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60
Query: 73 SEAHFVERALKLVRG----KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R +L++ +++R +E K+ SG++ + EV++ L +
Sbjct: 61 ISEEEANRVFELLKDNSFKVDINSCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKI 120
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S +E+ ++ +A +V E+ + E +++ L
Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGLDMEEVERMVDSIL 161
>gi|229551616|ref|ZP_04440341.1| transcription-repair coupling factor [Lactobacillus rhamnosus
LMS2-1]
gi|229315020|gb|EEN80993.1| transcription-repair coupling factor [Lactobacillus rhamnosus
LMS2-1]
Length = 1182
Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G T ++ EV G+ + ++ ++ L +PV + +
Sbjct: 501 ELKPGDYVVHVNHGIGQYTGMETLEVDGVHRD-YITIVYRNNDKLFIPVDQLNLVQKYVS 559
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + Q+ K+ + E++ + +++ +
Sbjct: 560 A------------DGKTPNVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYA 607
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + E + + + I+ ++
Sbjct: 608 FGPDDDLQ---QKFEDEFPYPETPDQLRSAKEIKRDMEKPKP 646
>gi|199598792|ref|ZP_03212204.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus rhamnosus HN001]
gi|199590297|gb|EDY98391.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus rhamnosus HN001]
Length = 1175
Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G T ++ EV G+ + ++ ++ L +PV + +
Sbjct: 494 ELKPGDYVVHVNHGIGQYTGMETLEVDGVHRD-YITIVYRNNDKLFIPVDQLNLVQKYVS 552
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + Q+ K+ + E++ + +++ +
Sbjct: 553 A------------DGKTPNVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYA 600
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + E + + + I+ ++
Sbjct: 601 FGPDDDLQ---QKFEDEFPYPETPDQLRSAKEIKRDMEKPKP 639
>gi|310823503|ref|YP_003955861.1| transcriptional regulator CarD [Stigmatella aurantiaca DW4/3-1]
gi|27651196|emb|CAD60088.1| HMGA-type transcription factor [Stigmatella aurantiaca DW4/3-1]
gi|309396575|gb|ADO74034.1| Transcriptional regulator CarD [Stigmatella aurantiaca DW4/3-1]
Length = 305
Score = 114 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 85/174 (48%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +VYP GV I+ I+ +EVAG KL F + ++D + VP K IG+
Sbjct: 3 EGLQLSVGDRVVYPNQGVCLISAIEVKEVAGQKLTFVTMRREEDGAVVMVPQAKVQAIGV 62
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RK++ VE+ +R + W +RA+ ++ G ++ +AEVV+ L
Sbjct: 63 RKVAGPAEVEQIYAFLRSDSDKADLDWKQRARTNLDRMTQGGILGLAEVVKGLQVLSELR 122
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
ER+LY++A + +V E+AA SI E A + I++ L + K T
Sbjct: 123 PLPTKERELYDNARHLLVTEVAAALSIPEVNAEDSIDIVLFPPGKERPKRTVAE 176
>gi|302534880|ref|ZP_07287222.1| transcription-repair coupling factor [Streptomyces sp. C]
gi|302443775|gb|EFL15591.1| transcription-repair coupling factor [Streptomyces sp. C]
Length = 1179
Score = 114 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 488 MPTRRRKSIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQGATREYLL---------VEYA 538
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 539 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 598
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 599 LYSARMAAPGHTFGPDTPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKSVP 649
>gi|330837541|ref|YP_004412182.1| transcriptional regulator, CarD family [Spirochaeta coccoides DSM
17374]
gi|329749444|gb|AEC02800.1| transcriptional regulator, CarD family [Spirochaeta coccoides DSM
17374]
Length = 161
Score = 114 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 75/160 (46%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+HIVYP GVG I I+E+ G ++VI M +K+P+ KA ++G+R +
Sbjct: 2 KFSVGDHIVYPLQGVGIIKCIEERNFQGEPQPYYVIHIAISDMIVKIPIAKAAEMGIRAI 61
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A+ + K W R Q + G + +IA+VV+ L+ E
Sbjct: 62 VPPSEAQEAIDSISSKYDPLPVDWKTRYQMNVDLLQQGSIASIAQVVQALYHRSKVKELP 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
ER+LY+ AL ++ E++ E E LI L K
Sbjct: 122 VQERKLYDGALRLLIDEVSFSLKRPEDEIEKLIFSRLEKK 161
>gi|212703168|ref|ZP_03311296.1| hypothetical protein DESPIG_01209 [Desulfovibrio piger ATCC 29098]
gi|212673434|gb|EEB33917.1| hypothetical protein DESPIG_01209 [Desulfovibrio piger ATCC 29098]
Length = 172
Score = 114 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + + +VYPA GVG I I Q + G +F+++ + + L VPV A ++G+R L
Sbjct: 1 MFTSEQLVVYPAQGVGQIERIDSQNIGGSACDFYIVRIRANSITLMVPVKNASNVGLRTL 60
Query: 73 SEAHFVERALKLVRGKA---RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
E + +R W+RR +EY ++ S DL +A V+R+L
Sbjct: 61 VSTKEAEHIWEALRNNPQQTVHTGQNWNRRFREYSERLKSPDLSIVANVLRELLLIGRTK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181
+ S+ ER+L E A++ + E+ V + + + + L S +K +T+
Sbjct: 121 DLSFGERRLLEQAMSLVTGELGEVLKTEQRDLQSELIS-LYSPPAKQPATTA 171
>gi|254384864|ref|ZP_05000200.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
gi|194343745|gb|EDX24711.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
Length = 1187
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 497 MPTRRRKAIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQGATREYLL---------VEYA 547
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 548 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 607
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 608 LYSARMAAPGHTFGPDTPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKSVP 658
>gi|72160828|ref|YP_288485.1| transcription-repair coupling factor [Thermobifida fusca YX]
gi|71914560|gb|AAZ54462.1| transcription-repair coupling factor [Thermobifida fusca YX]
Length = 1210
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 59/174 (33%), Gaps = 13/174 (7%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+++V+ HG+G E+ + + G E+ V ++
Sbjct: 518 MPSRRR-GVDPLQLKPGDYVVHEQHGIGRYVEMVSRTIQGATREYLV---------IEYA 567
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R ++ + V G + M + ++ +++R
Sbjct: 568 PSKRGQPGDRLFVPTDQLDEVTRYVGGDSPTLSKMGGSDWAKAKSRARKAVREIAGDLIR 627
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++S ++ + V + + AI ++ ++
Sbjct: 628 LYSARHASPGHAFSPDTPWQR---ELEDAFPYVETPDQLAAIEEVKRDMEKPVP 678
>gi|296271090|ref|YP_003653722.1| transcription-repair coupling factor [Thermobispora bispora DSM
43833]
gi|296093877|gb|ADG89829.1| transcription-repair coupling factor [Thermobispora bispora DSM
43833]
Length = 1164
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 64/174 (36%), Gaps = 18/174 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ + G+++V+ HGVG E+ ++ V G E+ VI + K L VP
Sbjct: 476 LPSRRRNMVDPLQLKPGDYVVHEQHGVGRYVEMVQRTVQGATREYLVIEYAKGD-RLYVP 534
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ ++ V G+ M Q+ ++ AE++R
Sbjct: 535 TDQLDEVTRY--------------VGGETPTLNRMGGSDWQKTKSRARKAVREIAAELIR 580
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++S ++ + V + + EAI ++ ++
Sbjct: 581 LYSARMASPGFAFSPDTPWQREME---DAFPYVETKDQLEAIEEVKRDMERPVP 631
>gi|229162478|ref|ZP_04290439.1| Transcriptional regulator, CarD [Bacillus cereus R309803]
gi|228620957|gb|EEK77822.1| Transcriptional regulator, CarD [Bacillus cereus R309803]
Length = 158
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 82/151 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP HG G I I+E+E++G K +++VI M L +P G+ ++ +R ++
Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|302871953|ref|YP_003840589.1| transcriptional regulator, CarD family [Caldicellulosiruptor
obsidiansis OB47]
gi|302574812|gb|ADL42603.1| transcriptional regulator, CarD family [Caldicellulosiruptor
obsidiansis OB47]
Length = 168
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R +
Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60
Query: 73 SEAHFVERALKLVRG----KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R +L++ +++R +E K+ SG++ + EV++ L +
Sbjct: 61 ISEEEANRVFELLKDNSFKVDINSCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKI 120
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S +E+ ++ +A +V E+ + E +++ L
Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGLDMEEVERIVDSIL 161
>gi|288556410|ref|YP_003428345.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4]
gi|288547570|gb|ADC51453.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4]
Length = 158
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP HG G I I+E+E++G K +++VI M + +P GK + +R ++
Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGKKQQYYVIKMSIGNMQVMIPTGKILSSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ + + + W +R + KI +G L AEVVRDL + + +
Sbjct: 67 DIIALKNIIHIFQHGESDSLLSWKQRYKVNTDKIKTGKLQECAEVVRDLMQMKKEKTLNT 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGFIKGITENQIKSF 157
>gi|121535694|ref|ZP_01667498.1| transcriptional regulator, CarD family [Thermosinus carboxydivorans
Nor1]
gi|121305725|gb|EAX46663.1| transcriptional regulator, CarD family [Thermosinus carboxydivorans
Nor1]
Length = 164
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 68/150 (45%)
Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G+ +VYP HG G + ++E EV G K ++V+ M + +P + G+R +
Sbjct: 4 VGDKVVYPMHGAGIVEALEEHEVLGKKQYYYVLTMFYGGMRVMIPQDQVGQSGLRAVVGE 63
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
+ + +++ W+RR KI SG ++ +AEVVR+L + + S E
Sbjct: 64 TEIAQVKEVLSASPEQDTGNWNRRINNSLTKIKSGSILEVAEVVRNLMKQEVTRRLSTGE 123
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLI 165
R+L ++A ++ E+ +
Sbjct: 124 RRLLDTAKQILISELVLACDKDVDSVEGWV 153
>gi|108760592|ref|YP_633761.1| transcriptional regulator CarD [Myxococcus xanthus DK 1622]
gi|1022328|emb|CAA91224.1| carD [Myxococcus xanthus]
gi|108464472|gb|ABF89657.1| transcriptional regulator CarD [Myxococcus xanthus DK 1622]
Length = 316
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 87/175 (49%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +VYP GV ++ I +EVAG KL F + ++D + VP GK + IG
Sbjct: 5 SASLQLAVGDRVVYPNQGVCRVSAIDVKEVAGQKLTFVTMRREEDGAVVMVPEGKVLAIG 64
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+RK++ A VE +R + W +RA+ ++ G ++ +AEVV+ L
Sbjct: 65 VRKVASAEDVEAIFTFLRSDSDKADLDWKQRARTNLDRMTQGGIMGLAEVVKGLQVLSEL 124
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSEN 183
ER+LY++A + +V E+AA +E A + I++ L + K T+
Sbjct: 125 RPLPTKERELYDNARHLLVTEVAAALGTAEVNAEDAIDIVLFPPGRERPKRTAAE 179
>gi|291294864|ref|YP_003506262.1| CarD family transcriptional regulator [Meiothermus ruber DSM 1279]
gi|290469823|gb|ADD27242.1| transcriptional regulator, CarD family [Meiothermus ruber DSM 1279]
Length = 164
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 65/157 (41%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+R G+ +V P +GVG + I ++ VAG ++ + F + VPV +R+
Sbjct: 2 SEYRPGDKVVLPPYGVGVVAGIAQRSVAGSDRAYYQVDFPGTRSKAYVPVEAPQTTRLRR 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V L L++ W+ R ++ + GD IA + L + +
Sbjct: 62 ALSPDQVNEILALLQEGRLPLPRQWAARHRKTTEILADGDPFRIATLAGQLRAWELEKGL 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
+RQ A++ + EI+ V I+ EA L E
Sbjct: 122 PDLDRQALRRAMHLLAEEISQVLEITLDEARKLFEEA 158
>gi|238062748|ref|ZP_04607457.1| transcription-repair coupling factor [Micromonospora sp. ATCC
39149]
gi|237884559|gb|EEP73387.1| transcription-repair coupling factor [Micromonospora sp. ATCC
39149]
Length = 1229
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+H+V+ HG+G E+ ++ V G E+ V ++
Sbjct: 531 MPSRRRNTIDPLELKAGDHVVHEQHGIGRYVELVQRTVNGASREYLV---------IEYA 581
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ M Q+ A+ A++++
Sbjct: 582 PSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLHRMGGADWQKSKARARKAVKEIAAQLIQ 641
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ ++ + + + AI ++ ++
Sbjct: 642 LYAARKASKGHAFAPDSPWQR---ELEDAFPWQETPDQLAAIEEVKRDMEQTVP 692
>gi|294813058|ref|ZP_06771701.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
ATCC 27064]
gi|294325657|gb|EFG07300.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
ATCC 27064]
Length = 1206
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 516 MPTRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 566
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 567 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 626
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 627 LYSARMAAPGHAFGPDTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKTVP 677
>gi|297624690|ref|YP_003706124.1| CarD family transcriptional regulator [Truepera radiovictrix DSM
17093]
gi|297165870|gb|ADI15581.1| transcriptional regulator, CarD family [Truepera radiovictrix DSM
17093]
Length = 168
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 69/157 (43%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
++ ++ G+ +V P +GVG + + VAG ++ + F VPV G+
Sbjct: 4 AQKTYKHGDQVVLPPYGVGVVAGTTVRTVAGTDHHYYEVEFPNGTSKAFVPVAAPQAAGL 63
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
R V + L+ + W+ R + ++SGD IA + +L R D +
Sbjct: 64 RPALTKAEVHKVLERLSNGRINLPKQWAARHRRVTEILSSGDPYQIATLGSELRRWDLER 123
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166
+RQ Y AL + EI+AV I+ EA +++
Sbjct: 124 GLPDLDRQAYRRALRLLAGEISAVLGITPKEAREMMD 160
>gi|83308694|emb|CAJ01604.1| putative transcriptional factor regulator [Methylocapsa acidiphila]
Length = 175
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 101/155 (65%), Positives = 123/155 (79%)
Query: 21 VYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVER 80
VYPAHGVG I I+EQ VAG KLE FVI+F KDKM LKVP K +GMRKL+EA V++
Sbjct: 2 VYPAHGVGQIIAIEEQVVAGFKLELFVISFIKDKMILKVPTPKVASVGMRKLAEAGVVKK 61
Query: 81 ALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYE 140
AL + G+AR+KRTMWSRRAQEY+AKINSGDLIAIAEVVRDL+R+D+QPE+SYSERQLYE
Sbjct: 62 ALDTLAGRARIKRTMWSRRAQEYEAKINSGDLIAIAEVVRDLYRSDAQPEQSYSERQLYE 121
Query: 141 SALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
+AL+RM REI V ++E E++ +IE L +
Sbjct: 122 AALDRMAREIVVVQKLTETESLKVIEGQLLKGPRR 156
>gi|55980137|ref|YP_143434.1| hypothetical protein TTHA0168 [Thermus thermophilus HB8]
gi|55771550|dbj|BAD69991.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 164
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 70/161 (43%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ FR G+ +V P +GVG + I ++ V+G+ ++ + F + VPV +G+RK
Sbjct: 2 KEFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRK 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V L L++ W+ R ++ + G+ IA++ L + +
Sbjct: 62 ALAPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWEVERGL 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+RQ A++ + E+A I+ EA L E +
Sbjct: 122 PDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEEAWGEE 162
>gi|15613946|ref|NP_242249.1| transcriptional factor [Bacillus halodurans C-125]
gi|10173999|dbj|BAB05102.1| transcriptional factor [Bacillus halodurans C-125]
Length = 164
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+H+VYP HG G + +I+E+E+ G +FV+ F + + +P + G+RK+
Sbjct: 1 MFKIGDHVVYPFHGAGVVQDIEEKEILGETHSYFVLHFPLTDIKVMLPKHRIQQSGLRKV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE-- 130
+ V+ + ++ ++ +++ + + SG +I A ++ L + ++
Sbjct: 61 IDQSDVDHLIDALQKGPE-TPLSTNQFSKDTENLLKSGSIIDAAHLISGLAKKQAERTNG 119
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + A + E+ V +ISE +A I+ +L S S
Sbjct: 120 LHIQDRNFLQKAKQFIASELIVVKNISEEQAYAFIDEHLPSPSE 163
>gi|326941362|gb|AEA17258.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 153
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 81/152 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP G G I I+E+EV+G K +++VI M L +P G+ ++ +R +
Sbjct: 1 MFQIGDNIVYPMQGAGIIKAIEEKEVSGEKQQYYVIKMSASNMELMIPAGRILNSNIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 61 TDITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 121 ASEKKMLDNAYEFLISELGLIEGITENQIKSF 152
>gi|258509516|ref|YP_003172267.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
gi|257149443|emb|CAR88416.1| Transcription-repair coupling factor [Lactobacillus rhamnosus GG]
gi|259650784|dbj|BAI42946.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
Length = 1175
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G T ++ EV G+ + ++ ++ L +PV + +
Sbjct: 494 ELKPGDYVVHVNHGIGQYTGMETLEVDGVHRD-YITIVYRNNDKLFIPVDQLNLVQKYVS 552
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + Q+ + + E++ + +++ +
Sbjct: 553 A------------DGKTPNVNKLGGTEWQKTKRIVAARIEDIADELIDLYAKREAEKGYA 600
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + E + + + I+ ++
Sbjct: 601 FGPDDDLQ---QKFEDEFPYPETPDQLRSAKEIKRDMEKPKP 639
>gi|254388765|ref|ZP_05003997.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
ATCC 27064]
gi|197702484|gb|EDY48296.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
ATCC 27064]
Length = 1187
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 497 MPTRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 547
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 548 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 607
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 608 LYSARMAAPGHAFGPDTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKTVP 658
>gi|46200120|ref|YP_005787.1| transcriptional regulator [Thermus thermophilus HB27]
gi|46197748|gb|AAS82160.1| transcriptional regulator [Thermus thermophilus HB27]
Length = 164
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 70/161 (43%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ FR G+ +V P +GVG + I ++ V+G+ ++ + F + VPV +G+RK
Sbjct: 2 KEFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRK 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V L L++ W+ R ++ + G+ IA++ L + +
Sbjct: 62 ALAPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILAEGNPYRIAQMAGQLRAWEVERGL 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+RQ A++ + E+A I+ EA L E +
Sbjct: 122 PDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEEAWGEE 162
>gi|326441399|ref|ZP_08216133.1| transcription-repair coupling factor [Streptomyces clavuligerus
ATCC 27064]
Length = 1176
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 486 MPTRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 537 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 596
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 597 LYSARMAAPGHAFGPDTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKTVP 647
>gi|218898740|ref|YP_002447151.1| transcriptional regulator, CarD family [Bacillus cereus G9842]
gi|228902146|ref|ZP_04066310.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
gi|228966545|ref|ZP_04127598.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
sotto str. T04001]
gi|218545939|gb|ACK98333.1| transcriptional regulator, CarD family [Bacillus cereus G9842]
gi|228793267|gb|EEM40817.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228857572|gb|EEN02068.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
Length = 158
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 80/151 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ + +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRISNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALVHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157
>gi|228909469|ref|ZP_04073294.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200]
gi|228850246|gb|EEM95075.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200]
Length = 158
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 80/151 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+AG K +++VI M L +P G+ + +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMELMIPAGRISNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALVHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157
>gi|218294627|ref|ZP_03495481.1| transcriptional regulator, CarD family [Thermus aquaticus Y51MC23]
gi|218244535|gb|EED11059.1| transcriptional regulator, CarD family [Thermus aquaticus Y51MC23]
Length = 164
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 69/161 (42%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ FR G+ +V P +GVG + I ++ ++G+ ++ + F + VPV +GMRK
Sbjct: 2 KEFRPGDKVVLPPYGVGVVAGIAQRSISGVSRAYYQVDFPGSRSKAYVPVEAPQSVGMRK 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V L L++ W+ R ++ + G+ IA++ L + +
Sbjct: 62 ALSPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWELERGL 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+RQ A+ + E++ I+ EA L E +
Sbjct: 122 PDLDRQALRRAICLLAEEVSQTLEITVQEAKRLFEEAWGEE 162
>gi|229099195|ref|ZP_04230127.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29]
gi|229105347|ref|ZP_04235994.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28]
gi|229118208|ref|ZP_04247566.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3]
gi|228665255|gb|EEL20739.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3]
gi|228678059|gb|EEL32289.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28]
gi|228684176|gb|EEL38122.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29]
Length = 164
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 80/157 (50%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRILSKDMQVMLPMDQLQKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DKGTLNDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V +SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQDVSEHQATEFLQETIN 163
>gi|229191731|ref|ZP_04318708.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876]
gi|228591725|gb|EEK49567.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876]
Length = 158
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ ++ +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPTGRILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157
>gi|191639457|ref|YP_001988623.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
BL23]
gi|190713759|emb|CAQ67765.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
BL23]
gi|205270976|emb|CAP07849.1| transcriptional-repair coupling factor [Lactobacillus casei BL23]
gi|327383550|gb|AEA55026.1| Transcription-repair coupling factor [Lactobacillus casei LC2W]
gi|327386742|gb|AEA58216.1| Transcription-repair coupling factor [Lactobacillus casei BD-II]
Length = 1174
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G T ++ EV G+ + ++ ++ L +PV + +
Sbjct: 494 ELKPGDYVVHVNHGIGQYTGMETLEVDGVHRD-YITIVYRNNDKLFIPVDQLNLVQKYVS 552
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + Q+ K+ + E++ + +++ +
Sbjct: 553 A------------DGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFA 600
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ E + + + I+ ++
Sbjct: 601 FGPDDDLQ---HKFEAEFPYPETPDQLRSAKEIKHDMEKPKP 639
>gi|239630377|ref|ZP_04673408.1| transcription-repair coupling factor [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|239526660|gb|EEQ65661.1| transcription-repair coupling factor [Lactobacillus paracasei
subsp. paracasei 8700:2]
Length = 1174
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G T ++ EV G+ + ++ ++ L +PV + +
Sbjct: 494 ELKPGDYVVHVNHGIGQYTGMETLEVDGVHRD-YITIVYRNNDKLFIPVDQLNLVQKYVS 552
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + Q+ K+ + E++ + +++ +
Sbjct: 553 A------------DGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFA 600
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ E + + + I+ ++
Sbjct: 601 FGPDDDLQ---HKFEAEFPYPETPDQLRSAKEIKHDMEKPKP 639
>gi|315924877|ref|ZP_07921094.1| CarD family transcriptional regulator [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621776|gb|EFV01740.1| CarD family transcriptional regulator [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 159
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 83/154 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IVYP HG G I I+E ++ ++ + + M + +PV KA ++G+R++
Sbjct: 1 MYNIGDKIVYPMHGAGVIKNIQEMDIFEKTQMYYKVTIAAEGMEILIPVDKAEEVGLREI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E L+++ + WS+R Q+ ++ SGD+I +A+V R+L D + S
Sbjct: 61 PTHQDLEAMLQVLSQPEDKMTSNWSKRYQDNMDQMKSGDIIDVAKVTRNLMLLDRRKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIE 166
++++ +A N ++ E+ ++ + EA +IE
Sbjct: 121 SGDKKMLMTAKNFLISEMMLIDGKEKEEACKIIE 154
>gi|227533044|ref|ZP_03963093.1| transcription-repair coupling factor (TRCF) [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|227189445|gb|EEI69512.1| transcription-repair coupling factor (TRCF) [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
Length = 1174
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G T ++ EV G+ + ++ ++ L +PV + +
Sbjct: 494 ELKPGDYVVHVNHGIGQYTGMETLEVDGVHRD-YITIVYRNNDKLFIPVDQLNLVQKYVS 552
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + Q+ K+ + E++ + +++ +
Sbjct: 553 A------------DGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFA 600
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ E + + + I+ ++
Sbjct: 601 FGPDDDLQ---HKFEAEFPYPETPDQLRSAKEIKHDMEKPKP 639
>gi|301067528|ref|YP_003789551.1| transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus casei str. Zhang]
gi|300439935|gb|ADK19701.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus casei str. Zhang]
Length = 1174
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G T ++ EV G+ + ++ ++ L +PV + +
Sbjct: 494 ELKPGDYVVHVNHGIGQYTGMETLEVDGVHRD-YITIVYRNNDKLFIPVDQLNLVQKYVS 552
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + Q+ K+ + E++ + +++ +
Sbjct: 553 A------------DGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFA 600
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ E + + + I+ ++
Sbjct: 601 FGPDDDLQ---HKFEAEFPYPETPDQLRSAKEIKHDMEKPKP 639
>gi|30021746|ref|NP_833377.1| CarD-like transcriptional regulator [Bacillus cereus ATCC 14579]
gi|206969394|ref|ZP_03230349.1| transcriptional regulator, CarD family [Bacillus cereus AH1134]
gi|218230882|ref|YP_002368460.1| transcriptional regulator, CarD family [Bacillus cereus B4264]
gi|228953921|ref|ZP_04115959.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228959831|ref|ZP_04121505.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047328|ref|ZP_04192927.1| Transcriptional regulator, CarD [Bacillus cereus AH676]
gi|229071154|ref|ZP_04204380.1| Transcriptional regulator, CarD [Bacillus cereus F65185]
gi|229080862|ref|ZP_04213379.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2]
gi|229111070|ref|ZP_04240629.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15]
gi|229128920|ref|ZP_04257896.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4]
gi|229146213|ref|ZP_04274588.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24]
gi|229151843|ref|ZP_04280042.1| Transcriptional regulator, CarD [Bacillus cereus m1550]
gi|229179932|ref|ZP_04307278.1| Transcriptional regulator, CarD [Bacillus cereus 172560W]
gi|296504148|ref|YP_003665848.1| CarD-like transcriptional regulator [Bacillus thuringiensis BMB171]
gi|29897301|gb|AAP10578.1| CarD-like transcriptional regulator [Bacillus cereus ATCC 14579]
gi|206736435|gb|EDZ53593.1| transcriptional regulator, CarD family [Bacillus cereus AH1134]
gi|218158839|gb|ACK58831.1| transcriptional regulator, CarD family [Bacillus cereus B4264]
gi|228603613|gb|EEK61088.1| Transcriptional regulator, CarD [Bacillus cereus 172560W]
gi|228631656|gb|EEK88286.1| Transcriptional regulator, CarD [Bacillus cereus m1550]
gi|228637272|gb|EEK93727.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24]
gi|228654625|gb|EEL10487.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4]
gi|228672433|gb|EEL27718.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15]
gi|228702440|gb|EEL54909.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2]
gi|228712094|gb|EEL64043.1| Transcriptional regulator, CarD [Bacillus cereus F65185]
gi|228724070|gb|EEL75416.1| Transcriptional regulator, CarD [Bacillus cereus AH676]
gi|228799825|gb|EEM46768.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805741|gb|EEM52322.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|296325200|gb|ADH08128.1| CarD-like transcriptional regulator [Bacillus thuringiensis BMB171]
Length = 158
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E++G K +++VI M L +P G+ ++ +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157
>gi|116495978|ref|YP_807712.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
gi|116106128|gb|ABJ71270.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
Length = 1174
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G T ++ EV G+ + ++ ++ L +PV + +
Sbjct: 494 ELKPGDYVVHVNHGIGQYTGMETLEVDGVHRD-YITIVYRNNDKLFIPVDQLNLVQKYVS 552
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + Q+ K+ + E++ + +++ +
Sbjct: 553 A------------DGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFA 600
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ E + + + I+ ++
Sbjct: 601 FGPDDDLQ---HKFEAEFPYPETPDQLRSAKEIKHDMEKPKP 639
>gi|227824939|ref|ZP_03989771.1| transcriptional regulator [Acidaminococcus sp. D21]
gi|226905438|gb|EEH91356.1| transcriptional regulator [Acidaminococcus sp. D21]
Length = 162
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ ++YP HG I +++++ + G ++++FV M + VP G +G+R +
Sbjct: 4 MFTVGDKVLYPMHGAAVIRDVEQKVIDGRQIDYFVFDMLLSNMKVMVPAGNVEKVGIRPI 63
Query: 73 SEAHFVERALKLVRGKA--RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ + + ++++ + R+KR W+RR Y K+ +G + +A+VVR L + +
Sbjct: 64 VDKSVMPKVEEVLKARPENRMKRITWNRRYNMYIDKMKTGSIFEVADVVRTLAVQEEDKK 123
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S ER+L +A ++ E+ V S+ E ++ +E +
Sbjct: 124 LSTGERRLLSTAKQILLSEVMLVESVDEEKSEAWLEKFI 162
>gi|326778864|ref|ZP_08238129.1| transcription-repair coupling factor [Streptomyces cf. griseus
XylebKG-1]
gi|326659197|gb|EGE44043.1| transcription-repair coupling factor [Streptomyces cf. griseus
XylebKG-1]
Length = 1177
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 487 MPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLL---------VEYA 537
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + + A++++
Sbjct: 538 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIK 597
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 598 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKTVP 648
>gi|228940730|ref|ZP_04103293.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973650|ref|ZP_04134232.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980206|ref|ZP_04140520.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407]
gi|228779564|gb|EEM27817.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407]
gi|228786111|gb|EEM34108.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818974|gb|EEM65036.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 158
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+EV+G K +++VI M L +P G+ ++ +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEVSGEKQQYYVIKMSASNMELMIPAGRILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157
>gi|220904723|ref|YP_002480035.1| CarD family transcriptional regulator [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869022|gb|ACL49357.1| transcriptional regulator, CarD family [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 171
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + +VYPA GVG I I Q + G+ +F+++ + + L VPV A +G+R L
Sbjct: 1 MFTPNDLVVYPAQGVGKIESIDSQTIGGIACDFYIVRIQANNVTLMVPVNNAAHVGLRTL 60
Query: 73 SEAHFVERALKLVR---GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ER L+ +R GK W+RR +EY ++ S +L + EV+R+L
Sbjct: 61 TTTEEAERILEELRSSTGKVVHTGQNWNRRFREYSERLKSPELAVVTEVLRELLLIGRTK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
E S+ ER+L E A+ + E+A V + E + +
Sbjct: 121 ELSFGERRLQEQAMGLVTGELAEVLKVEEDSLRDELLE 158
>gi|117929120|ref|YP_873671.1| transcription-repair coupling factor [Acidothermus cellulolyticus
11B]
gi|117649583|gb|ABK53685.1| transcription-repair coupling factor [Acidothermus cellulolyticus
11B]
Length = 1192
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 60/179 (33%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ ++++ R G+ +V+ HGVG + +E+ G E+ VI + +
Sbjct: 501 LPSRRRKSIDPLELRPGDFVVHEQHGVGRFVGMATREIGGATREYLVIEYAPSRRGQPGD 560
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP + EA ++R W+RR +
Sbjct: 561 RLWVPTDSLDQVTRYVGGEAPTLDRI----------GGADWARR----KGRARKAVREIA 606
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE+++ + P ++ ++ + V + + I ++ ++
Sbjct: 607 AELIQLYSARMASPGHAFGPDTPWQR---ELEEAFPYVETPDQLRTIEEVKADMERPVP 662
>gi|182438215|ref|YP_001825934.1| putative transcriptional-repair coupling factor [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178466731|dbj|BAG21251.1| putative transcriptional-repair coupling factor [Streptomyces
griseus subsp. griseus NBRC 13350]
Length = 1177
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 487 MPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLL---------VEYA 537
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + + A++++
Sbjct: 538 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIK 597
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 598 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKTVP 648
>gi|303238352|ref|ZP_07324887.1| transcriptional regulator, CarD family [Acetivibrio cellulolyticus
CD2]
gi|302594056|gb|EFL63769.1| transcriptional regulator, CarD family [Acetivibrio cellulolyticus
CD2]
Length = 159
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 79/158 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IVYP HG G I I+E+E+ G K ++V+ M + +P IG+R++
Sbjct: 1 MYNVGDRIVYPMHGAGIIESIEEREILGSKQSYYVVRIPIGDMKVMIPTKNVTGIGIREV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+R ++ + + W++R +E KI SG++ +A+VVR L + + S
Sbjct: 61 ISERDADRVFSVLGAENNSANSNWNKRYRENMVKIKSGNIYEVADVVRSLMVREKEKGLS 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER++ SA ++ E+ +++ E +I L+
Sbjct: 121 TGERKMLSSAKQILISELVLAKNMNAIEIEKIISKFLN 158
>gi|163941254|ref|YP_001646138.1| CarD family transcriptional regulator [Bacillus weihenstephanensis
KBAB4]
gi|229012829|ref|ZP_04169997.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048]
gi|229061220|ref|ZP_04198570.1| Transcriptional regulator, CarD [Bacillus cereus AH603]
gi|229134451|ref|ZP_04263264.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196]
gi|229168365|ref|ZP_04296090.1| Transcriptional regulator, CarD [Bacillus cereus AH621]
gi|163863451|gb|ABY44510.1| transcriptional regulator, CarD family [Bacillus weihenstephanensis
KBAB4]
gi|228615191|gb|EEK72291.1| Transcriptional regulator, CarD [Bacillus cereus AH621]
gi|228649072|gb|EEL05094.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196]
gi|228718091|gb|EEL69731.1| Transcriptional regulator, CarD [Bacillus cereus AH603]
gi|228748431|gb|EEL98288.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048]
Length = 158
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 82/151 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP HG G I I+E+E++G K +++VI M + +P+GK + +R ++
Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGEKRQYYVIKMSASNMEVMIPMGKILSSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DIKALTNIIDIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|75760996|ref|ZP_00741000.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491513|gb|EAO54725.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 167
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 83/152 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R +
Sbjct: 15 MFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRPV 74
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 75 TDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTLN 134
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 135 TSEKKLLDDAYKFLVSELELIKGITENQIKSF 166
>gi|330465805|ref|YP_004403548.1| transcription-repair coupling factor [Verrucosispora maris
AB-18-032]
gi|328808776|gb|AEB42948.1| transcription-repair coupling factor [Verrucosispora maris
AB-18-032]
Length = 1232
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ R G+H+V+ HG+G E+ ++ V G E+ V ++
Sbjct: 535 MPSRRRNTIDPLELRAGDHVVHEQHGIGRYVELVQRTVNGASREYLV---------IEYA 585
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ M Q+ A+ A++++
Sbjct: 586 PSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLHKMGGSDWQKSKARARKAVKEIAAQLIQ 645
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + + + AI+ ++ ++
Sbjct: 646 LYAARKASKGHNFGPDTPWQR---ELEDAFPWQETPDQLAAIDEVKRDMEQSVP 696
>gi|291445280|ref|ZP_06584670.1| transcriptional-repair coupling factor [Streptomyces roseosporus
NRRL 15998]
gi|291348227|gb|EFE75131.1| transcriptional-repair coupling factor [Streptomyces roseosporus
NRRL 15998]
Length = 1184
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 494 MPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLL---------VEYA 544
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + + A++++
Sbjct: 545 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIK 604
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 605 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKTVP 655
>gi|89894787|ref|YP_518274.1| hypothetical protein DSY2041 [Desulfitobacterium hafniense Y51]
gi|89334235|dbj|BAE83830.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 174
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 3/172 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ ++YP +G G I I+E+EV G+K +++++ M + +PVGKA D+G+R++
Sbjct: 1 MFQVGDKVLYPMYGAGIIDSIEEKEVLGVKGQYYLLNIPHVNMEIMIPVGKAEDLGIRQV 60
Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ V+ L+ + + K+ SGD+ +E++RDL R +
Sbjct: 61 VNSEVVDDVLRFFFEGDTDPVMFESNNRFYRDINKKKMKSGDIYQESEIIRDLTRKSNLH 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181
+ + + +AL + EI V I +A+ +++ ++ + EK +
Sbjct: 121 KLGMEDNNMLHTALQLVTSEIVQVKGIEMEKAVEMLQSVINQAKEEKEKQEA 172
>gi|297559048|ref|YP_003678022.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296843496|gb|ADH65516.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 1201
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+++V+ HGVG E+ ++V G E+ + ++
Sbjct: 504 MPSRRRGTVDPLQLKPGDYVVHEQHGVGRYLEMVSRQVQGATREYLL---------IEYA 554
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R + + V G+A M + ++ +++R
Sbjct: 555 PSKRGQPGDRLFVPTEQLGEVTRYVGGEAPTLSKMGGAEWSKAKSRARKVVREIAGDLIR 614
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + V + + AI+ ++ ++S
Sbjct: 615 LYSARQASPGHAFGPDTPWQR---ELEDAFPYVETPDQLAAIDEVKKDMSRSVP 665
>gi|320449429|ref|YP_004201525.1| transcriptional regulator [Thermus scotoductus SA-01]
gi|320149598|gb|ADW20976.1| transcriptional regulator [Thermus scotoductus SA-01]
Length = 164
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 69/161 (42%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ FR G+ +V P +GVG + I ++ V+G+ ++ + F + VPV +GMRK
Sbjct: 2 KEFRPGDKVVLPPYGVGVVAGIAQRSVSGISRAYYQVDFPGSRSKAYVPVEAPQSVGMRK 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V L L++ W+ R ++ + G+ IA++ L + +
Sbjct: 62 ALAPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWELERGL 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+RQ A+ + E++ I+ EA L E +
Sbjct: 122 PDLDRQALRRAIYLLAEEVSQTLEITVQEAKRLFEEAWGEE 162
>gi|239941833|ref|ZP_04693770.1| putative transcriptional-repair coupling factor [Streptomyces
roseosporus NRRL 15998]
gi|239988293|ref|ZP_04708957.1| putative transcriptional-repair coupling factor [Streptomyces
roseosporus NRRL 11379]
Length = 1177
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 487 MPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLL---------VEYA 537
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + + A++++
Sbjct: 538 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIK 597
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 598 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKTVP 648
>gi|328951535|ref|YP_004368870.1| transcriptional regulator, CarD family [Marinithermus
hydrothermalis DSM 14884]
gi|328451859|gb|AEB12760.1| transcriptional regulator, CarD family [Marinithermus
hydrothermalis DSM 14884]
Length = 164
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 68/158 (43%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +R G+ +V P +GVG + I ++ VAG+ ++ + F + VPV +G+R
Sbjct: 2 KQYRPGDKVVLPPYGVGVVAGIAKRTVAGVGRSYYQVEFPGTRSKAFVPVESPGQVGLRP 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V L+ ++ W+ R + + GD IA + L R + +
Sbjct: 62 ALSREEVGEILERLKNGRVSLPKQWAARHRRVTEILAEGDPYRIAVLAGQLRRWEVERGL 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+RQ + A+N + E++ I+ EA L E
Sbjct: 122 PDLDRQAFRRAVNLLAEEVSQALEITVEEARQLFEDAW 159
>gi|40062705|gb|AAR37618.1| transcriptional regulator, CarD family [uncultured marine bacterium
314]
Length = 223
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
++ + +++VYP HGVG I I + ++ + + F+ + +K+K+ L +P+
Sbjct: 53 PNEKKLYNVKDYVVYPKHGVGKIISIDKAKMGDIDITFYKVLIEKEKLTLSIPIN--QQS 110
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT-D 126
+R +S + +A +++ K R+KRTMWSRRAQEYD KINSG L +AEVVRDL++ D
Sbjct: 111 HLRHVSSISQINKAASILKSKPRIKRTMWSRRAQEYDQKINSGKLYELAEVVRDLNKKTD 170
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
E+SYSERQL+E A NR+ E+ V +A ++ L K + +K
Sbjct: 171 IIAEQSYSERQLFEKAYNRLKSELEVVLG---EKAQQKMDKALKFKENSLQKE 220
>gi|228922354|ref|ZP_04085661.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837409|gb|EEM82743.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 158
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E++G K +++VI M L +P GK ++ +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMELMIPAGKILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALAHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAYEFLISELGLIEGITENQIKSF 157
>gi|229018847|ref|ZP_04175694.1| Transcriptional regulator, CarD [Bacillus cereus AH1273]
gi|229025088|ref|ZP_04181515.1| Transcriptional regulator, CarD [Bacillus cereus AH1272]
gi|228736198|gb|EEL86766.1| Transcriptional regulator, CarD [Bacillus cereus AH1272]
gi|228742468|gb|EEL92621.1| Transcriptional regulator, CarD [Bacillus cereus AH1273]
Length = 158
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 82/151 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP HG G I I+E+E++G K +++VI M + +P+GK ++ +R ++
Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEISGEKQQYYVIKMSASNMEVMIPMGKILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 TLKALTHIIDVFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|257057197|ref|YP_003135029.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
DSM 43017]
gi|256587069|gb|ACU98202.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
DSM 43017]
Length = 1199
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ ++G+++V+ HG+G E+ + V G E+ V ++
Sbjct: 497 MPSRRRNAVDPLALKSGDYVVHDQHGIGRFVEMVRRTVGGATREYLV---------IEYA 547
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R ++ + V G+ M ++ A+ AE+V+
Sbjct: 548 PSKRGHPGDRLFVPTDQLDEVSRYVGGETPTLNKMGGADWKKTKARARKAVKEIAAELVQ 607
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++S ++ + + + AI+ ++ ++
Sbjct: 608 LYAARQAAPGHAFSPDTPWQR---ELEDAFPFTETADQLAAIDEVKRDMERDVP 658
>gi|328882973|emb|CCA56212.1| Transcription-repair coupling factor [Streptomyces venezuelae ATCC
10712]
Length = 1221
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 531 MPAKRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLL---------VEYA 581
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 582 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 641
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + + + I ++ ++
Sbjct: 642 LYSARMAAPGHAFAPDTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKTVP 692
>gi|312793424|ref|YP_004026347.1| CarD family transcriptional regulator [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312876058|ref|ZP_07736047.1| transcriptional regulator, CarD family [Caldicellulosiruptor
lactoaceticus 6A]
gi|311797256|gb|EFR13596.1| transcriptional regulator, CarD family [Caldicellulosiruptor
lactoaceticus 6A]
gi|312180564|gb|ADQ40734.1| transcriptional regulator, CarD family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 168
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 79/161 (49%), Gaps = 4/161 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R +
Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60
Query: 73 SEAHFVERALKLVRG----KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R +L++ +++R +E K+ SG++ + EV++ L +
Sbjct: 61 ISEEEANRVFELLKDNSFKVDINSCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKV 120
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S +E+ ++ +A +V E+ I+ E +++ L
Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGIAIEEVERMVDSIL 161
>gi|282866318|ref|ZP_06275364.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
gi|282558904|gb|EFB64460.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
Length = 1176
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ + G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 486 MPARRRKSIDPLTLQAGDYIVHEQHGVGRYIEMVQRTVQGATREYLL---------VEYA 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + + A++++
Sbjct: 537 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIK 596
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + + + I ++ ++
Sbjct: 597 LYSARMAAPGHTFAPDTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKSVP 647
>gi|15616497|ref|NP_244803.1| transcriptional regulator [Bacillus halodurans C-125]
gi|10176560|dbj|BAB07654.1| transcriptional regulator [Bacillus halodurans C-125]
Length = 153
Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 78/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+H+VYP HG G I I+E+E+AG + ++FVI + M + +P K +R +
Sbjct: 1 MFQIGDHVVYPMHGAGIIKAIEEKEIAGERKQYFVIKMSINNMDVMIPADKISSTNIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ +++ + + + + W R + K+ +G + AEVVRDL R + +
Sbjct: 61 TDLTALKQIIHIFQHGESEQLLPWKERYKMNADKMKTGHIQEGAEVVRDLMRIKKEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ + A + E+ + I+E +
Sbjct: 121 PSEKKMLDDAREFLNSELGLIEGITENHIKSF 152
>gi|224368792|ref|YP_002602953.1| transcriptional regulator (CarD family protein) [Desulfobacterium
autotrophicum HRM2]
gi|223691508|gb|ACN14791.1| transcriptional regulator (CarD family protein) [Desulfobacterium
autotrophicum HRM2]
Length = 153
Score = 111 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 21 VYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVER 80
VYPAHGVG I I+ +E+ G + F+++ + M + +P +G+R++ + V
Sbjct: 3 VYPAHGVGCIESIESKEINGENMNFYMMKIVDNGMVIMIPTANVESVGLREVIKQKDVPE 62
Query: 81 ALKLVRGK-ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139
++++ K + + W+RR +EY KI +G + IAEV RDL + + + S+ ER+L
Sbjct: 63 VYRIMQEKGPDLDKQTWNRRYREYMDKIKTGSIYDIAEVFRDLFQLKLEKDLSFGERKLL 122
Query: 140 ESALNRMVREIAAVNSISEPEAINLIEVNLS 170
++A N +V+E++ ++ E + IE +
Sbjct: 123 DTAQNLLVQELSMAKNMDEAAMMTEIEQLFN 153
>gi|163942446|ref|YP_001647330.1| CarD family transcriptional regulator [Bacillus weihenstephanensis
KBAB4]
gi|163864643|gb|ABY45702.1| transcriptional regulator, CarD family [Bacillus weihenstephanensis
KBAB4]
Length = 159
Score = 111 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 81/158 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 1 MFQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIISKDMQVMLPINQLQKSGIRYI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ L W +R K+ +G+L AEVVRDL R + + +
Sbjct: 61 VDKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A ++ E+A V ++SE +A ++ ++
Sbjct: 121 ASEKQMLDNARKMVISEVALVQNVSEHQATEFLQDTIN 158
>gi|228923471|ref|ZP_04086756.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228836197|gb|EEM81553.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 164
Score = 111 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 83/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L+ AEVVRDL R + + +
Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLLDSAEVVRDLLRRNKERTLNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEYLQDTIN 163
>gi|222529236|ref|YP_002573118.1| CarD family transcriptional regulator [Caldicellulosiruptor bescii
DSM 6725]
gi|312622517|ref|YP_004024130.1| CarD family transcriptional regulator [Caldicellulosiruptor
kronotskyensis 2002]
gi|222456083|gb|ACM60345.1| transcriptional regulator, CarD family [Caldicellulosiruptor bescii
DSM 6725]
gi|312202984|gb|ADQ46311.1| transcriptional regulator, CarD family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 168
Score = 111 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 79/161 (49%), Gaps = 4/161 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R +
Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60
Query: 73 SEAHFVERALKLVRG----KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R +L++ +++R +E K+ SG++ + EV++ L +
Sbjct: 61 ISEEEANRVFELLKDNSFKVDINGCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKV 120
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S +E+ ++ +A +V E+ ++ E +++ L
Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGLAIEEVERMVDNIL 161
>gi|297193946|ref|ZP_06911344.1| transcriptional-repair coupling factor [Streptomyces
pristinaespiralis ATCC 25486]
gi|297152012|gb|EFH31470.1| transcriptional-repair coupling factor [Streptomyces
pristinaespiralis ATCC 25486]
Length = 1070
Score = 111 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 380 MPTRRRKTIDPLTLEAGDYIVHEQHGVGRYLEMVQRTVQGATREYLL---------VEYA 430
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 431 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 490
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + A V + + I ++ ++
Sbjct: 491 LYSARMAAPGHAFGPDTPWQR---ELEDAFAYVETPDQLSTIAEVKEDMEKTVP 541
>gi|228994492|ref|ZP_04154342.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442]
gi|228765250|gb|EEM13954.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442]
Length = 167
Score = 111 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 81/148 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R +
Sbjct: 15 MFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVLIPTGKILSSSIRPV 74
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + W +R + KI +G++ AEVVRDL R + +
Sbjct: 75 TDILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 134
Query: 133 YSERQLYESALNRMVREIAAVNSISEPE 160
SE+++ ++A ++ E+ + I+E +
Sbjct: 135 TSEKKMLDNAHEFLISELGLIKGITENQ 162
>gi|312127692|ref|YP_003992566.1| CarD family transcriptional regulator [Caldicellulosiruptor
hydrothermalis 108]
gi|311777711|gb|ADQ07197.1| transcriptional regulator, CarD family [Caldicellulosiruptor
hydrothermalis 108]
Length = 168
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 79/161 (49%), Gaps = 4/161 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ G+ I++P HG G I EI E++V +++V+ + M + VPV A +IG+R +
Sbjct: 1 MYKVGDTIIHPLHGAGRIVEIVEEKVFDSVQKYYVVKILYNGMKVLVPVKSASEIGIRNV 60
Query: 73 SEAHFVERALKLVRG----KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R +L++ +++R +E K+ SG++ + EV++ L +
Sbjct: 61 ISEEEANRVFELLKDNSFKVDINGCGNYNKRIRENQQKLKSGNIYCVVEVLKMLAMREKV 120
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
S +E+ ++ +A +V E+ ++ E +++ L
Sbjct: 121 KGLSTNEKMMFNTAKQILVSELGLAKGLAIEEVERMVDSIL 161
>gi|228901595|ref|ZP_04065773.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
gi|228908832|ref|ZP_04072664.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200]
gi|228850842|gb|EEM95664.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200]
gi|228858007|gb|EEN02489.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
Length = 158
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 83/152 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTLN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYKFLVSELELIKGITENQIKSF 157
>gi|229031301|ref|ZP_04187307.1| Transcriptional regulator, CarD [Bacillus cereus AH1271]
gi|228730059|gb|EEL81033.1| Transcriptional regulator, CarD [Bacillus cereus AH1271]
Length = 158
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 80/151 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+AG K +++VI M + +P G+ + +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSGSNMEVMIPAGRILSSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + L + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITAIAHILNIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITESQIKSF 157
>gi|30022787|ref|NP_834418.1| CarD family transcriptional regulator [Bacillus cereus ATCC 14579]
gi|229129995|ref|ZP_04258959.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4]
gi|29898346|gb|AAP11619.1| CarD-like transcriptional regulator [Bacillus cereus ATCC 14579]
gi|228653439|gb|EEL09313.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-Cer4]
Length = 164
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQDTIN 163
>gi|302340584|ref|YP_003805790.1| transcriptional regulator, CarD family [Spirochaeta smaragdinae DSM
11293]
gi|301637769|gb|ADK83196.1| transcriptional regulator, CarD family [Spirochaeta smaragdinae DSM
11293]
Length = 171
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 78/159 (49%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ +H+VYP GVG IT+I+E+ + G K ++VI + M + +P K + G+R +
Sbjct: 13 FKVNQHVVYPLQGVGIITDIQERVLKGKKTLYYVIYLELSDMTVMIPTDKTDERGIRAIV 72
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
E+AL+L+ + W R Q + SG + IA VVR L+ E
Sbjct: 73 PKEEAEKALQLISEEYEPVTADWKMRYQMNLDLLRSGSINDIATVVRALYHRSKVKELPI 132
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
ER+LY+ A+ ++ E+ + + LI L S+
Sbjct: 133 QERKLYDDAMKILIDEVTCSLGKKKSDVEELIFERLESE 171
>gi|229135557|ref|ZP_04264340.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196]
gi|229169450|ref|ZP_04297156.1| Transcriptional regulator, CarD [Bacillus cereus AH621]
gi|228614008|gb|EEK71127.1| Transcriptional regulator, CarD [Bacillus cereus AH621]
gi|228647899|gb|EEL03951.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196]
Length = 162
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 81/157 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 5 FQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIISKDMQVMLPINQLQKSGIRYIV 64
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L W +R K+ +G+L AEVVRDL R + + +
Sbjct: 65 DKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 124
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A ++ E+A V ++SE +A ++ ++
Sbjct: 125 SEKQMLDNARKMVISEVALVQNVSEHQATEFLQDTIN 161
>gi|75758584|ref|ZP_00738703.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74493930|gb|EAO57027.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 167
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 81/152 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R +
Sbjct: 15 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRPV 74
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ + + + K W +R + K+ +G++ AEVVRDL R + +
Sbjct: 75 IDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKVKTGEIQEGAEVVRDLMRMKKEKALN 134
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 135 TSEKKLLDDAYRFLVSELELIKGITENQIKSF 166
>gi|219669222|ref|YP_002459657.1| CarD family transcriptional regulator [Desulfitobacterium hafniense
DCB-2]
gi|219539482|gb|ACL21221.1| transcriptional regulator, CarD family [Desulfitobacterium
hafniense DCB-2]
Length = 174
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 86/172 (50%), Gaps = 3/172 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ ++YP +G G I I+E+EV G+K +++++ M + +PVGKA D+G+R++
Sbjct: 1 MFQVGDKVLYPMYGAGIIDSIEEKEVLGVKGQYYLLNIPHVNMEIMIPVGKAEDLGIRQV 60
Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ V+ L+ + + K+ SGD+ +E++RDL R +
Sbjct: 61 VNSEVVDDVLRFFFEGDTDPVMFESNNRFYRDINKKKMKSGDIYQESEIIRDLTRKSNLH 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTS 181
+ + + +AL + EI V + +A+ +++ ++ + EK +
Sbjct: 121 KLGMEDNNMLHTALQLVTSEIVQVKGVEMEKAVEMLQSVINQAKDEKEKQEA 172
>gi|218235392|ref|YP_002369513.1| transcriptional regulator, CarD family [Bacillus cereus B4264]
gi|228960989|ref|ZP_04122619.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229112178|ref|ZP_04241720.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15]
gi|229152915|ref|ZP_04281097.1| Transcriptional regulator, CarD [Bacillus cereus m1550]
gi|218163349|gb|ACK63341.1| transcriptional regulator, CarD family [Bacillus cereus B4264]
gi|228630528|gb|EEK87175.1| Transcriptional regulator, CarD [Bacillus cereus m1550]
gi|228671294|gb|EEL26596.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-15]
gi|228798706|gb|EEM45689.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 164
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DRGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQDTIN 163
>gi|297200238|ref|ZP_06917635.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
29083]
gi|197717008|gb|EDY61042.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
29083]
Length = 1190
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 500 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 550
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 551 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 610
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 611 LYSARMAAPGHTFGPDTPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKSVP 661
>gi|229080349|ref|ZP_04212874.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2]
gi|228703018|gb|EEL55479.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2]
Length = 156
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 79/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R +
Sbjct: 4 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQIMIPKGKILSSNIRPV 63
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + R + + + + W +R + KI +G++ AEV+RDL R + +
Sbjct: 64 IDILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKALN 123
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 124 TSEKKLLDDAYKFLVSELELIKGITEKQIKSF 155
>gi|89893788|ref|YP_517275.1| hypothetical protein DSY1042 [Desulfitobacterium hafniense Y51]
gi|219668161|ref|YP_002458596.1| CarD family transcriptional regulator [Desulfitobacterium hafniense
DCB-2]
gi|89333236|dbj|BAE82831.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538421|gb|ACL20160.1| transcriptional regulator, CarD family [Desulfitobacterium
hafniense DCB-2]
Length = 161
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ I YP +G G I IKE+EV G K ++ + K+ + +P+ + DIG+R++
Sbjct: 1 MFQVGDKIFYPLYGAGIIEAIKEKEVLGKKQFYYFLNIPHIKLKIMIPIERTHDIGIREV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQE--YDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ ++ L + + ++R + +KI +GD+ EV+RDL R +
Sbjct: 61 VKPDVLQHVLDDLYNGTTDPLSDNNQRYRRDMNKSKIKTGDIYKGTEVIRDLMRKSKVKK 120
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
S ++ + E+AL + E V + + +A++L+ ++
Sbjct: 121 LSAEDKAMLENALQILTSEFIQVRGVCKEQAVHLLNEVIN 160
>gi|228905590|ref|ZP_04069538.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
gi|228854065|gb|EEM98775.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
Length = 158
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 82/152 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSIRNMQVMIPTGKILSSSIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIHIFQHGESDRLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
S++++ ++A ++ E+ + I+E + +
Sbjct: 126 TSDKKMLDNAHEFLISELGLIKGITENQIKSF 157
>gi|206969561|ref|ZP_03230515.1| transcriptional regulator, CarD family [Bacillus cereus AH1134]
gi|228954994|ref|ZP_04117011.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229147285|ref|ZP_04275636.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24]
gi|229181033|ref|ZP_04308368.1| Transcriptional regulator, CarD [Bacillus cereus 172560W]
gi|296505181|ref|YP_003666881.1| CarD family transcriptional regulator [Bacillus thuringiensis
BMB171]
gi|206735249|gb|EDZ52417.1| transcriptional regulator, CarD family [Bacillus cereus AH1134]
gi|228602590|gb|EEK60076.1| Transcriptional regulator, CarD [Bacillus cereus 172560W]
gi|228636186|gb|EEK92665.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST24]
gi|228804721|gb|EEM51323.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|296326233|gb|ADH09161.1| CarD family transcriptional regulator [Bacillus thuringiensis
BMB171]
Length = 164
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V +++E +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163
>gi|218898141|ref|YP_002446552.1| transcriptional regulator, CarD family [Bacillus cereus G9842]
gi|218543299|gb|ACK95693.1| transcriptional regulator, CarD family [Bacillus cereus G9842]
Length = 153
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 83/152 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R +
Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 61 TDILALKHIIHIFQHEKSCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTLN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 121 TSEKKLLDDAYKFLVSELELIKGITENQIKSF 152
>gi|229007995|ref|ZP_04165557.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4]
gi|228753269|gb|EEM02745.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4]
Length = 167
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 81/148 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R +
Sbjct: 15 MFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVLIPTGKILSSSIRPV 74
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + W +R + KI +G++ AEVVRDL R + +
Sbjct: 75 TDILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 134
Query: 133 YSERQLYESALNRMVREIAAVNSISEPE 160
SE+++ E+A ++ E+ + I+E +
Sbjct: 135 TSEKKMLENAHEFLISELGLIKGITENQ 162
>gi|320010356|gb|ADW05206.1| transcription-repair coupling factor [Streptomyces flavogriseus
ATCC 33331]
Length = 1176
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ + G+ IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 486 MPARRRKSIDPLTLQAGDFIVHEQHGVGRYIEMVQRTVQGATREYLL---------VEYA 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + + A++++
Sbjct: 537 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIK 596
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 597 LYSARMAAPGHAFGPDTPWQR---ELEDAFPYAETPDQLSTIAEVKEDMEKSVP 647
>gi|229013922|ref|ZP_04171049.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048]
gi|229062401|ref|ZP_04199717.1| Transcriptional regulator, CarD [Bacillus cereus AH603]
gi|228716872|gb|EEL68559.1| Transcriptional regulator, CarD [Bacillus cereus AH603]
gi|228747392|gb|EEL97268.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048]
Length = 162
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 81/157 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 5 FQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIISKDMQVMLPMNQLQKSGIRYIV 64
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L W +R K+ +G+L AEVVRDL R + + +
Sbjct: 65 DKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 124
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A ++ E+A V ++SE +A ++ ++
Sbjct: 125 SEKQMLDNARKMVISEVALVQNVSEHQATEFLQDTIN 161
>gi|229019949|ref|ZP_04176742.1| Transcriptional regulator, CarD [Bacillus cereus AH1273]
gi|229026183|ref|ZP_04182547.1| Transcriptional regulator, CarD [Bacillus cereus AH1272]
gi|228735111|gb|EEL85742.1| Transcriptional regulator, CarD [Bacillus cereus AH1272]
gi|228741333|gb|EEL91540.1| Transcriptional regulator, CarD [Bacillus cereus AH1273]
Length = 164
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 81/157 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTTRQYCVIRIINKDMQVMLPMDQLQKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DKGTLDGILLEFHHGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A ++ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMVISEVALVQNVSEHQATEFLQDTIN 163
>gi|324327548|gb|ADY22808.1| transcriptional regulator, CarD family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 158
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 82/151 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP HG G I I+E+E+AG K +++VI M + +P GK ++ +R ++
Sbjct: 7 FQIGDNIVYPMHGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALIHIMDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|228941895|ref|ZP_04104439.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228974826|ref|ZP_04135389.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981418|ref|ZP_04141717.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407]
gi|228778301|gb|EEM26569.1| Transcriptional regulator, CarD [Bacillus thuringiensis Bt407]
gi|228784886|gb|EEM32902.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228817728|gb|EEM63809.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326942500|gb|AEA18396.1| CarD family transcriptional regulator [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 164
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMNQLKKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V +++E +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163
>gi|329941162|ref|ZP_08290441.1| transcriptional-repair coupling factor [Streptomyces
griseoaurantiacus M045]
gi|329299693|gb|EGG43592.1| transcriptional-repair coupling factor [Streptomyces
griseoaurantiacus M045]
Length = 1176
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 486 MPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 537 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 596
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 597 LYSARMAAPGHAFGGDTPWQR---ELEDAFPYAETPDQLTTIAEVKDDMEKSVP 647
>gi|226311543|ref|YP_002771437.1| hypothetical protein BBR47_19560 [Brevibacillus brevis NBRC 100599]
gi|226094491|dbj|BAH42933.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 167
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 78/156 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ + YP HG G I ++E+E G K ++V+ ++ + VPV K +G+RK+
Sbjct: 1 MFLVGDKVFYPIHGAGVIEAMEEKEFLGEKHLYYVLNMSLKELNIMVPVEKMSALGIRKV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
EA +E L + R ++R + + K+ SGD+ +EV+RDL +
Sbjct: 61 VEADILENVLAAMLEGQRDTALNAAQRYKLHTEKMKSGDIYEQSEVIRDLVGMSKEKVLG 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
S++ + ++A ++ EI V + +A +++
Sbjct: 121 TSDKVMLDNAQQLLISEIELVKDVDTQQATEMLKQA 156
>gi|325291324|ref|YP_004267505.1| transcriptional regulator, CarD family [Syntrophobotulus glycolicus
DSM 8271]
gi|324966725|gb|ADY57504.1| transcriptional regulator, CarD family [Syntrophobotulus glycolicus
DSM 8271]
Length = 162
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ I+YP HG+ I ++++E+ G + +++ K M + +PV KA IG+RK+
Sbjct: 1 MFQVGDKILYPMHGICIIDAVEKKELFGQQELCYILNIQKANMKITIPVDKATKIGVRKV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRA--QEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+E L ++R + K +G++ E++RDL R + +
Sbjct: 61 VGPEILENILNSFNLGDTDSNIFENQRYCKEINKKKFKTGNINQGTEIIRDLTRKSRRTK 120
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + ++A V E+ V ++ +A+ L++ L+SK
Sbjct: 121 LGQDDTNMLDNARRVFVSELMEVKGLALEQAVYLLDEALNSK 162
>gi|229048423|ref|ZP_04193990.1| Transcriptional regulator, CarD [Bacillus cereus AH676]
gi|228722938|gb|EEL74316.1| Transcriptional regulator, CarD [Bacillus cereus AH676]
Length = 164
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V +++E +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163
>gi|325970599|ref|YP_004246790.1| CarD family transcriptional regulator [Spirochaeta sp. Buddy]
gi|324025837|gb|ADY12596.1| transcriptional regulator, CarD family [Spirochaeta sp. Buddy]
Length = 167
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 76/164 (46%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ F GEH+VYP GVG I I+E+ G ++VI D M + +PV K+ ++
Sbjct: 4 PQEKVQFAVGEHVVYPLQGVGVIKRIEERTFRGAVTMYYVIYLDISDMTVMIPVEKSKEM 63
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
G+R + E + A+ + K W R Q + G + +IA+VV+ L+
Sbjct: 64 GIRPIVEQKEAQSAIDSISSKYEPMPVDWKARYQMNVDLLKQGSIASIAKVVQALYHRSK 123
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E ER+LY++AL ++ E A + E L+ L
Sbjct: 124 IKELPVQERKLYDNALRLLIDETAFSLKKDKKEIELLVFSRLEK 167
>gi|309812806|ref|ZP_07706544.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
gi|308433223|gb|EFP57117.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
Length = 1209
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+H+V+ HGVG E+ ++ V G E+ V L+
Sbjct: 503 MPSRRRNVVDPLQLKPGDHVVHEQHGVGRFVEMMQRTVGGATREYLV---------LEYA 553
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ M +K E++R
Sbjct: 554 ASKRGQPGDRLFVPTDQLDQVTRYVGGEMPTLSKMGGSDWAATKSKARRHVKQIAGELIR 613
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + A V + + +I ++ ++
Sbjct: 614 LYSARQATPGHAFAPDTPWQR---ELEDAFAYVETPDQLSSIEEVKADMEKTVP 664
>gi|229173800|ref|ZP_04301340.1| Transcriptional regulator, CarD [Bacillus cereus MM3]
gi|228609650|gb|EEK66932.1| Transcriptional regulator, CarD [Bacillus cereus MM3]
Length = 156
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 79/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R +
Sbjct: 4 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSLSNMQIMIPKGKILSSNIRPV 63
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + R + + + + W +R + KI +G++ AEV+RDL R + +
Sbjct: 64 IDILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKALN 123
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 124 TSEKKLLDDAYKFLVSELELIKGITEKQMKSF 155
>gi|229030844|ref|ZP_04186866.1| Transcriptional regulator, CarD [Bacillus cereus AH1271]
gi|228730493|gb|EEL81451.1| Transcriptional regulator, CarD [Bacillus cereus AH1271]
Length = 158
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 79/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSLSNMQIMIPKGKILSSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + R + + + + W +R + KI +G++ AEV+RDL R + +
Sbjct: 66 IDILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157
>gi|269125277|ref|YP_003298647.1| transcription-repair coupling factor [Thermomonospora curvata DSM
43183]
gi|268310235|gb|ACY96609.1| transcription-repair coupling factor [Thermomonospora curvata DSM
43183]
Length = 1168
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 18/174 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ R G+++V+ HGVG E+ + V G E+ V+ + + L VP
Sbjct: 480 MPSRRRGGIDPLQLRPGDYVVHEQHGVGRYVEMVSRTVQGATREYLVLEYARGD-RLFVP 538
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ +I V G++ + + A+ E++R
Sbjct: 539 TDQLEEITRY--------------VGGESPTLHRLGGADWAKSKARARKAVRQIAGELIR 584
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + AI ++ ++
Sbjct: 585 LYSARMATPGHAFGPDTPWQR---ELEDAFPYTETADQLAAIEEVKADMEKPVP 635
>gi|229163710|ref|ZP_04291657.1| Transcriptional regulator, CarD [Bacillus cereus R309803]
gi|228619772|gb|EEK76651.1| Transcriptional regulator, CarD [Bacillus cereus R309803]
Length = 164
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 81/157 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTLRQYCVIRILSKDMQVMLPMDQLQKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DKGTLNDILLEFQQGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V ++SE +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVSEHQATEFLQDTIN 163
>gi|229073067|ref|ZP_04206256.1| Transcriptional regulator, CarD [Bacillus cereus F65185]
gi|228710053|gb|EEL62038.1| Transcriptional regulator, CarD [Bacillus cereus F65185]
Length = 158
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 79/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQIMIPKGKILSSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + R + + + + W +R + KI +G++ AEV+RDL R + +
Sbjct: 66 IDILTLTRIIHIFQHGESGELMPWKQRYKVNTDKIKTGEIQEGAEVIRDLIRIKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157
>gi|29830092|ref|NP_824726.1| transcriptional-repair coupling factor [Streptomyces avermitilis
MA-4680]
gi|29607202|dbj|BAC71261.1| putative transcriptional-repair coupling factor [Streptomyces
avermitilis MA-4680]
Length = 1176
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 486 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 537 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 596
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 597 LYSARMAAPGHAFGSDTPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKTVP 647
>gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus
acidocaldarius LAA1]
gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus
acidocaldarius LAA1]
Length = 1183
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q G+++V+ HG+G IK EV G + ++ +++ L VPV + I
Sbjct: 501 QELNVGDYVVHVNHGIGRYMGIKTLEVDGRRNDYLYLSYAGGDS-LYVPVDQIDQIQRYI 559
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S K ++ S Q+ ++ ++++ + ++ P
Sbjct: 560 GSG------------EKEPKLHSLGSSEWQKTKNRVKKSVRDIAGDLLKLYAKREATPGH 607
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S +++ M + + AI I+ ++
Sbjct: 608 AFSPDTPWQADFENM---FPYEETPDQLRAIAEIKRDMEKPRP 647
>gi|228905766|ref|ZP_04069681.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
gi|228853883|gb|EEM98626.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
Length = 158
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 81/152 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ + + + K W +R + K+ +G++ AEVVRDL R + +
Sbjct: 66 IDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKVKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYRFLVSELELIKGITENQIKSF 157
>gi|159036485|ref|YP_001535738.1| transcription-repair coupling factor [Salinispora arenicola
CNS-205]
gi|157915320|gb|ABV96747.1| transcription-repair coupling factor [Salinispora arenicola
CNS-205]
Length = 1218
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ R G+H+V+ HG+G E+ ++ V G E+ V ++
Sbjct: 517 LPSRRRNTIDPLELRAGDHVVHEQHGIGRYVELVQRTVNGASREYLV---------IEYA 567
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ M Q+ A+ A++++
Sbjct: 568 PSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLHKMGGSDWQKSKARARKAVREIAAQLIQ 627
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + + + AI ++ ++
Sbjct: 628 LYAARKASKGHPFGPDTPWQR---ELEDAFPWQETPDQLAAIEEVKRDMEQTVP 678
>gi|206973195|ref|ZP_03234117.1| transcriptional regulator, CarD family [Bacillus cereus AH1134]
gi|229191421|ref|ZP_04318406.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876]
gi|206732079|gb|EDZ49279.1| transcriptional regulator, CarD family [Bacillus cereus AH1134]
gi|228592103|gb|EEK49937.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876]
Length = 158
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 81/152 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 IDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYRFLVSELELIKGITENQIKSF 157
>gi|297566998|ref|YP_003685970.1| CarD family transcriptional regulator [Meiothermus silvanus DSM
9946]
gi|296851447|gb|ADH64462.1| transcriptional regulator, CarD family [Meiothermus silvanus DSM
9946]
Length = 163
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F GE +VYPAHG G I + E+ V G K ++V+ + VPVG A +R
Sbjct: 1 MFAIGEAVVYPAHGAGRIVGLDERSVLGEKRIYYVLELLGQAHTVMVPVGVAQA-CLRPP 59
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
VER L ++ T+W +R +E + + SGD +A + L R S
Sbjct: 60 LAGAAVERLLDELK-TEVKLPTIWMQRHREEEKILASGDPYQVAALAGTLFRYQRGKTLS 118
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
SER ++E AL + E+A + +S EA + L +
Sbjct: 119 LSERGVFEKALAMLASELALIWGVSLDEAKARVLARLEDQE 159
>gi|229191260|ref|ZP_04318247.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876]
gi|228592177|gb|EEK50009.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876]
Length = 158
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 84/152 (55%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI KM + +P GK ++ +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISKMQVMIPTGKILNSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157
>gi|228910571|ref|ZP_04074385.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200]
gi|228849135|gb|EEM93975.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 200]
Length = 164
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMDQLKKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DRGTLDDILLEFQNGEADPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V +++E +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163
>gi|229106940|ref|ZP_04237040.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28]
gi|229118992|ref|ZP_04248336.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3]
gi|228664467|gb|EEL19964.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3]
gi|228676495|gb|EEL31241.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28]
Length = 158
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 83/152 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIMHIFQHGESDKLLPWKQRYKVNTDKIKTGEIQDGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 126 TSEKKMLDNAHEFLISELGLIKGITENQIKSF 157
>gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 1183
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q G+++V+ HG+G IK EV G + ++ +++ L VPV + I
Sbjct: 501 QELNVGDYVVHVNHGIGRYMGIKTLEVDGRRNDYLYLSYAGGDS-LYVPVDQIDQIQRYI 559
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S K ++ S Q+ ++ ++++ + ++ P
Sbjct: 560 GSG------------EKEPKLHSLGSSEWQKTKNRVKKSVRDIAGDLLKLYAKREATPGH 607
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S +++ M + + AI I+ ++
Sbjct: 608 AFSPDTPWQADFENM---FPYEETPDQLRAIAEIKRDMEKPRP 647
>gi|288555760|ref|YP_003427695.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4]
gi|288546920|gb|ADC50803.1| CarD family transcriptional regulator [Bacillus pseudofirmus OF4]
Length = 162
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+H+VYP HG GTI +I+E++V G ++++ F + L +P + G+RK+
Sbjct: 1 MFKVGDHVVYPYHGAGTIQDIEEKDVLGETHSYYILHFPLVDVKLMLPENRIDQSGLRKV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE-- 130
+ +E ++ ++ + S ++E + + SG++I A ++ L + S+
Sbjct: 61 IDQQELEVLVEALQNGPETPPST-SHFSRETENLLKSGNIIDAAHLISSLSKKQSERANG 119
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+R + A + E+ +N ++E +A I+ L
Sbjct: 120 LHIQDRNHLQKARQMIASELVLMNDMTEEQAYEFIDSAL 158
>gi|154253521|ref|YP_001414345.1| transcription-repair coupling factor [Parvibaculum lavamentivorans
DS-1]
gi|154157471|gb|ABS64688.1| transcription-repair coupling factor [Parvibaculum lavamentivorans
DS-1]
Length = 1171
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 55/176 (31%), Gaps = 21/176 (11%)
Query: 3 FQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++KR G+ +V+ HG+G ++ EV G + ++ L
Sbjct: 483 RRKKRAENFLTEASSLSPGDLVVHVDHGIGRFERLQTIEVMGAPHDCLLL-IYHGGDKLY 541
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+PV + + + R +E + +G+LI I
Sbjct: 542 LPVENIELLSRY------GSDDLDAQLDRLGGTGWQARKARLKE-RIREMAGELIKI-AA 593
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R+L + + A + + + +AI+ + +L+
Sbjct: 594 ARELKTAPAMEPQPG--------AYDEFCARFPFTETEDQEQAIDAVLEDLARGRP 641
>gi|229174309|ref|ZP_04301842.1| Transcriptional regulator, CarD [Bacillus cereus MM3]
gi|228609166|gb|EEK66455.1| Transcriptional regulator, CarD [Bacillus cereus MM3]
Length = 158
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 79/151 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+ G K +++VI M + +P G+ + +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEITGEKQQYYVIKMSGSNMEVMIPAGRILSSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + L + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITAIAHILDIFQHGESDRLLTWKQRYKLNTDKIKTGKIQEGAEVVRDLLRMQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITESQIKSF 157
>gi|290959824|ref|YP_003491006.1| transcriptional-repair coupling factor [Streptomyces scabiei 87.22]
gi|260649350|emb|CBG72465.1| putative transcriptional-repair coupling factor [Streptomyces
scabiei 87.22]
Length = 1177
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 486 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 537 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 596
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 597 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKTVP 647
>gi|126650362|ref|ZP_01722590.1| transcriptional regulator, CarD family protein [Bacillus sp.
B14905]
gi|126593012|gb|EAZ86994.1| transcriptional regulator, CarD family protein [Bacillus sp.
B14905]
Length = 158
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F G++IVYP HGVG I I+E+E++G K +++VI M + +P GK + +R ++
Sbjct: 7 FEIGDNIVYPMHGVGIIKAIEEKEISGEKQQYYVIKMLIGNMQIMIPTGKILSSSIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ + + + + W +R + KIN+G + EVVRDL R + +
Sbjct: 67 DIIALKHIINIFQHGESDRLLPWKQRYKVNTDKINTGKIQECTEVVRDLIRMKKEQGLNS 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+ + +
Sbjct: 127 SEKKMLDNAHEFLISELVLIKGITVNQIKSF 157
>gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis
MPA1U2]
gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis
MPA1U2]
Length = 1177
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G++IV+ HG+G I+ E G+ ++ I K L VPV K I
Sbjct: 498 SEIKPGDYIVHIHHGIGRFVGIETLESGGVHKDYLHI-VYKADDKLFVPVDKIDLIQKYI 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K M ++ K+++ ++++ ++
Sbjct: 557 ASE------------EKEPKLHKMGGAEWKKTRTKVSAAVQDIADDLIKLYAEREALRGF 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++SE Q + + E + + +IN ++ ++ ++
Sbjct: 605 AFSEEQDMQR---QFEAEFPYEETTDQLRSINEVKRDMENERP 644
>gi|145593442|ref|YP_001157739.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
gi|145302779|gb|ABP53361.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
Length = 1216
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ R G+H+V+ HG+G E+ ++ V G E+ V ++
Sbjct: 515 LPSRRRNTIDPLELRAGDHVVHEQHGIGRYVELVQRTVNGASREYLV---------IEYA 565
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ M Q+ A+ A++++
Sbjct: 566 PSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLHKMGGSDWQKSKARARKAVREIAAQLIQ 625
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S+ ++ + + + AI ++ ++
Sbjct: 626 LYAARKASKGHSFGPDTPWQR---ELEDAFPWQETPDQLAAIEEVKRDMEQTVP 676
>gi|157691253|ref|YP_001485715.1| transcription regulator CarD [Bacillus pumilus SAFR-032]
gi|157680011|gb|ABV61155.1| CarD family transcriptional regulator [Bacillus pumilus SAFR-032]
Length = 153
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 75/152 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E + K +++VI M + +P K +R +
Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFSDEKQQYYVIKMSISHMKVMIPTRKISGSRIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ + + + + + W R KI +GD+ AEVVRDL R + +
Sbjct: 61 TDLLALNNVMHVFQHGESDQLLTWKERHTINTNKIKTGDIQDGAEVVRDLMRMKKEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ + A ++ E+ + I+E + +
Sbjct: 121 ASEKKMLDEAHEFLLSELEVIEGITEKQIKSF 152
>gi|294629781|ref|ZP_06708341.1| transcription-repair coupling factor [Streptomyces sp. e14]
gi|292833114|gb|EFF91463.1| transcription-repair coupling factor [Streptomyces sp. e14]
Length = 1184
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 493 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 543
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 544 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 603
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 604 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKSVP 654
>gi|328949054|ref|YP_004366391.1| CarD family transcriptional regulator [Treponema succinifaciens DSM
2489]
gi|328449378|gb|AEB15094.1| transcriptional regulator, CarD family [Treponema succinifaciens
DSM 2489]
Length = 206
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 75/169 (44%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ F + +VYP+ GVG ITEI +++ ++ I + M + VPV ++ D+G+R
Sbjct: 5 KTEFSVNQKVVYPSQGVGKITEIFKKDFNNEPTYYYKIYLEVSDMNVMVPVSRSKDLGIR 64
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ + AL + + W R Q + G + IA +VR L+ E
Sbjct: 65 AIVSKDEAQTALNSISDDFEPPTSDWKLRYQMNLDLLKKGTIGDIAAIVRCLYHRSKVKE 124
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
ER+LY++A + EIA IS E ++ L K EK
Sbjct: 125 LPILERKLYDNAKKLLEDEIAEAFGISNKEVEAMLHEKLEPLGLKIEKK 173
>gi|229015358|ref|ZP_04172376.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048]
gi|228745937|gb|EEL95922.1| Transcriptional regulator, CarD [Bacillus mycoides DSM 2048]
Length = 158
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 83/152 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLIRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 126 TSEKKMLDNAHEFLISELGLIKGITENQIKSF 157
>gi|229073467|ref|ZP_04206599.1| Transcriptional regulator, CarD [Bacillus cereus F65185]
gi|228709655|gb|EEL61697.1| Transcriptional regulator, CarD [Bacillus cereus F65185]
Length = 158
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 82/152 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++FVI M + +P GK ++ +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISNMQVMIPTGKILNSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYRFLVSELELIKGITENQIKSF 157
>gi|256787262|ref|ZP_05525693.1| transcriptional-repair coupling factor [Streptomyces lividans TK24]
gi|289771157|ref|ZP_06530535.1| transcription-repair coupling factor [Streptomyces lividans TK24]
gi|289701356|gb|EFD68785.1| transcription-repair coupling factor [Streptomyces lividans TK24]
Length = 1184
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 494 MPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 544
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 545 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 604
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + V + + I ++ ++
Sbjct: 605 LYSARMAAPGHAFGSDTPWQR---ELEDAFPYVETPDQLTTIAEVKDDMEKTVP 655
>gi|21221548|ref|NP_627327.1| transcriptional-repair coupling factor [Streptomyces coelicolor
A3(2)]
gi|10241792|emb|CAC09550.1| putative transcriptional-repair coupling factor [Streptomyces
coelicolor A3(2)]
Length = 1184
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 494 MPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 544
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 545 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 604
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + V + + I ++ ++
Sbjct: 605 LYSARMAAPGHAFGSDTPWQR---ELEDAFPYVETPDQLTTIAEVKDDMEKTVP 655
>gi|52142365|ref|YP_084467.1| CarD family transcriptional regulator [Bacillus cereus E33L]
gi|51975834|gb|AAU17384.1| possible transcriptional regulator, CarD family [Bacillus cereus
E33L]
Length = 158
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 79/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQIMIPKGKILSSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 IDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYKFLVSELELIKGITENQIKSF 157
>gi|75760847|ref|ZP_00740862.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218899872|ref|YP_002448283.1| transcriptional regulator, CarD family [Bacillus cereus G9842]
gi|228903236|ref|ZP_04067369.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
gi|228967819|ref|ZP_04128833.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
sotto str. T04001]
gi|229072221|ref|ZP_04205428.1| Transcriptional regulator, CarD [Bacillus cereus F65185]
gi|229076225|ref|ZP_04209192.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18]
gi|229081972|ref|ZP_04214463.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2]
gi|229193002|ref|ZP_04319958.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876]
gi|74491661|gb|EAO54862.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218545825|gb|ACK98219.1| transcriptional regulator, CarD family [Bacillus cereus G9842]
gi|228590449|gb|EEK48312.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 10876]
gi|228701349|gb|EEL53844.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-2]
gi|228706874|gb|EEL59080.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18]
gi|228710878|gb|EEL62846.1| Transcriptional regulator, CarD [Bacillus cereus F65185]
gi|228791869|gb|EEM39457.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228856410|gb|EEN00937.1| Transcriptional regulator, CarD [Bacillus thuringiensis IBL 4222]
Length = 164
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP HG G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMHGAGIIEAIEEKEILGTSRQYCVIRIISKDMQVMLPMEQLKKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DRGTLDDILLEFQNGESDPSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERTLNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
SE+Q+ ++A M+ E+A V +++E +A ++ ++
Sbjct: 127 SEKQMLDNARKMMISEVALVQNVTEHQATEFLQDTIN 163
>gi|16077580|ref|NP_388394.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
168]
gi|81345932|sp|P96659|YDEB_BACSU RecName: Full=Uncharacterized protein ydeB
gi|1881322|dbj|BAA19349.1| ydeB [Bacillus subtilis]
gi|2632813|emb|CAB12320.1| putative transcriptional regulator [Bacillus subtilis subsp.
subtilis str. 168]
Length = 153
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 79/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E K +++VI M + +P K + +R +
Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + W +R + KI +G++ AEVVRDL R + +
Sbjct: 61 TDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 121 ASEKKMLDNAYEFLISELEVIKGITEKQIKSF 152
>gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans
Nor1]
gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans
Nor1]
Length = 1109
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 65/174 (37%), Gaps = 18/174 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ ++ + + G+++V+ HG+G ++ EV G+ ++F+I + + + VP
Sbjct: 415 AAKGQQITYFRDLKVGDYVVHVNHGIGKYAGVETLEVGGVHRDYFLIRYAGED-KIYVPT 473
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + +E L + G K S A+A++ ++
Sbjct: 474 DQVHLLQKYIGAEGEVPR--LHRMGGTE--------------WQKATSRAKAAVADLAKE 517
Query: 122 LHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + + + ++ + + + +AI+ I+ ++ +
Sbjct: 518 LIALYAARQVTPGFAFEPDTPWQKEFEEAFPYEETPDQLQAISEIKRDMEAPRP 571
>gi|111018698|ref|YP_701670.1| CarD family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110818228|gb|ABG93512.1| probable transcriptional regulator, CarD family protein
[Rhodococcus jostii RHA1]
Length = 171
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 68/155 (43%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +YP HG T+T++ + + E+ ++ + +++PV KA IG+R
Sbjct: 3 LNIGDIFLYPHHGSVTVTKLTTRMFNDLPTEYVQFEVAQNGLSIEIPVAKAESIGVRNAI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
V R ++RG + WSRR + K+ G + ++EV+RDL S
Sbjct: 63 NNDEVGRVFDILRGPTVDDPSNWSRRFKANQEKLTVGGIFTVSEVIRDLMTRSQVKPLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E++ E A+ ++ E+ E IE
Sbjct: 123 GEKRQLEHAMQLVISELVLAMKSDPDETRRRIEAI 157
>gi|172056088|ref|YP_001812548.1| transcription-repair coupling factor [Exiguobacterium sibiricum
255-15]
gi|171988609|gb|ACB59531.1| transcription-repair coupling factor [Exiguobacterium sibiricum
255-15]
Length = 1171
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 63/182 (34%), Gaps = 25/182 (13%)
Query: 2 TFQQKRDAMR---------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
++K+ Q +TG+++V+ HG+G IK +VAG ++ + +
Sbjct: 475 ARRRKQTTKLTNAERIKSYQELKTGDYVVHIHHGIGRYHGIKTIDVAGNHQDYLHLIYAG 534
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VPV + I +E GK + ++ AK+
Sbjct: 535 EDS-LYVPVDQIDLIQKYVGAE------------GKEPKIYKLGGMEWKKVKAKVQKSVE 581
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+++ ++ ++ E A ++ + +I I+ ++
Sbjct: 582 DIADELIKLYAAREAAVGFAFPEDDDSTQA---FEASFPYEETVDQLRSIEEIKKDMERP 638
Query: 173 SS 174
Sbjct: 639 RP 640
>gi|229077167|ref|ZP_04209871.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18]
gi|229100763|ref|ZP_04231596.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29]
gi|228682650|gb|EEL36695.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29]
gi|228706186|gb|EEL58471.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18]
Length = 158
Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 79/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++VI M + +P GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQLYYVIKMSISNMQVMIPTGKILSSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + +++ + + W +R + KI +G++ AEV+RDL R + +
Sbjct: 66 IDILALTHIIQIFQHGESDELLPWKQRHKVNTDKIKTGEIQEGAEVIRDLIRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157
>gi|311898036|dbj|BAJ30444.1| putative transcription-repair-coupling factor [Kitasatospora setae
KM-6054]
Length = 1202
Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 58/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ G+++V+ HGVG E+ ++ V G E+ V L+
Sbjct: 506 MPSRRRNAIDPLALAAGDYVVHEQHGVGRYVEMVQRTVQGATREYLV---------LEYA 556
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ K V G+A + + + A++++
Sbjct: 557 PAKRGHPGDRLFVPTDQLDQVTKYVGGEAPTLHRLGGADWAKTKQRAKKAVKEIAADLIK 616
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 617 LYSARMAAPGHAFGPDTPWQR---ELEDAFPYAETPDQLTTIGEVKADMEKSVP 667
>gi|163939058|ref|YP_001643942.1| CarD family transcriptional regulator [Bacillus weihenstephanensis
KBAB4]
gi|163861255|gb|ABY42314.1| transcriptional regulator, CarD family [Bacillus weihenstephanensis
KBAB4]
Length = 153
Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 84/152 (55%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R +
Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ +++ + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 61 TDILALKHIIQIFQHGESDKLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 121 TSEKKMLDNAHEFLISELGLIKGITENQIKSF 152
>gi|269219241|ref|ZP_06163095.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211388|gb|EEZ77728.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
848 str. F0332]
Length = 1194
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA---GMKLEFFVIAFDK----- 52
M ++K Q + G+++V+ HGVG ++ ++ + + E+ V+ +
Sbjct: 495 MPARRKNAVDLQALKPGDYVVHEHHGVGRFVKMAKRSIGASRETQREYLVLEYASTRRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP + G+A M + A +
Sbjct: 555 PPDQLWVPTDSLDQVSRYAG--------------GEAPSLNKMGGSDWAKTKAGARAATK 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+VR + +S ++ + A V + + + I+ ++ ++
Sbjct: 601 QIAQELVRLYAARQAAKGFQFSPDTPWQR---ELEDSFAYVETPDQLQTIDEVKADMEKP 657
Query: 173 SS 174
+
Sbjct: 658 TP 659
>gi|56963460|ref|YP_175191.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16]
gi|56909703|dbj|BAD64230.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16]
Length = 165
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F+ G+ +VYP HG GTI E++E++V G +F++ F + L +P + G+RK
Sbjct: 2 SMFKVGDKVVYPYHGAGTIQEVEEKDVLGETHLYFILHFPLVDITLMLPESRIEQSGLRK 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE- 130
+ + +E+ K ++ + S+ +++ + + +G +I A +V L + ++
Sbjct: 62 VIPSSDLEKVAKALQNGPDTPPST-SQFSRDTENLLKTGSIIDAAHLVSSLSKKQAERSN 120
Query: 131 -KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+R + A + E+ AV SE +A I+ NL
Sbjct: 121 GLHIQDRHHLQKARQVLASELVAVQDFSEEQAYEFIDNNL 160
>gi|317124068|ref|YP_004098180.1| transcription-repair coupling factor [Intrasporangium calvum DSM
43043]
gi|315588156|gb|ADU47453.1| transcription-repair coupling factor [Intrasporangium calvum DSM
43043]
Length = 1208
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ R G+H+V+ HGVG E+ ++ VAG E+ V ++
Sbjct: 506 MPSRRRNQVDPLQLRPGDHVVHEQHGVGRFVEMMQRTVAGATREYLV---------IEYA 556
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ K V G+ M ++ A+++R
Sbjct: 557 ASKRGQPGDRLYVPTDQLDQVTKYVGGEEPTLNKMGGSDWTRTKSRAKRYVKQIAADLIR 616
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S ++ + A V + + +I+ ++ ++ +
Sbjct: 617 LYSARQATKGHAFSADTPWQR---ELEDAFAYVETPDQLSSIDEVKADMEKQVP 667
>gi|221308340|ref|ZP_03590187.1| hypothetical protein Bsubs1_02893 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312662|ref|ZP_03594467.1| hypothetical protein BsubsN3_02869 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317585|ref|ZP_03598879.1| hypothetical protein BsubsJ_02828 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321861|ref|ZP_03603155.1| hypothetical protein BsubsS_02899 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|291482932|dbj|BAI84007.1| hypothetical protein BSNT_00885 [Bacillus subtilis subsp. natto
BEST195]
Length = 158
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 79/153 (51%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F+ G++IVYP HG G I I+E+E K +++VI M + +P K + +R
Sbjct: 5 DMFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTSKILSSNIRP 64
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+++ ++ + + + + W +R + KI +G++ AEVVRDL R +
Sbjct: 65 VTDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164
+ SE+++ ++A ++ E+ + I+E + +
Sbjct: 125 NASEKKMLDNAYEFLISELEVIKGITEKQIKSF 157
>gi|229002840|ref|ZP_04160720.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17]
gi|228758404|gb|EEM07571.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17]
Length = 158
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 81/148 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVLIPTGKILSSSIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIHIFQHGESDRLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPE 160
SE+++ E+A ++ E+ + I+E +
Sbjct: 126 TSEKKMLENAHEFLISELGLIKGITENQ 153
>gi|284989494|ref|YP_003408048.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
43160]
gi|284062739|gb|ADB73677.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
43160]
Length = 1179
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+ +V+ HG+G E+ + V G + ++ + ++
Sbjct: 486 MPARRRNAVDLVQLQPGDLVVHEHHGIGRYIEMVSRTVNGGQRDYLI---------VEYA 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K R +++ + V G+A + Q+ + AE++R
Sbjct: 537 PSKRNQPPDRLFVPTDALDQLTRYVGGEAPALSKLGGADWQKTKGQARRAVKQIAAELIR 596
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Y +++ + + + AI+ ++ ++
Sbjct: 597 LYSARMATRGHAYGPDTVWQR---ELEDAFPFQETPDQLAAIDEVKTDMQHPVP 647
>gi|307324345|ref|ZP_07603553.1| transcription-repair coupling factor [Streptomyces violaceusniger
Tu 4113]
gi|306890076|gb|EFN21054.1| transcription-repair coupling factor [Streptomyces violaceusniger
Tu 4113]
Length = 1236
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G+ IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 546 MPARRRKTIDPLTLEAGDFIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 596
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A+++R
Sbjct: 597 PAKRGQPGDRLFVPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIR 656
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 657 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKSVP 707
>gi|8131942|gb|AAF73146.1|AF149031_1 unknown [Sinorhizobium meliloti]
Length = 162
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 111/161 (68%), Positives = 132/161 (81%)
Query: 28 GTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRG 87
G I I+EQEVAGMKLE FVI F+KDKM LKVPV KA+ IGMRKLSE FV+RALK+V+G
Sbjct: 1 GQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVGIGMRKLSETDFVDRALKVVQG 60
Query: 88 KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMV 147
KARVKRTMWSRRAQEYDAKINSGDLI+IAEVVRDL+R ++QPE+SYSERQLYE+AL+RM
Sbjct: 61 KARVKRTMWSRRAQEYDAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMA 120
Query: 148 REIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDKAA 188
REIAAVN +SE EA+ L+E NL+ + + ++ A
Sbjct: 121 REIAAVNRMSETEAVRLVEANLNKGPKRGKAIEEDDAQDEA 161
>gi|229132055|ref|ZP_04260918.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196]
gi|228651455|gb|EEL07427.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST196]
Length = 158
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 84/152 (55%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P+GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISNMQVMIPMGKILSSSIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ +++ + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIQIFQHGESDKLLPWKQRYKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 126 TSEKKMLDNAHEFLISELGLIKGITENQIKSF 157
>gi|302519736|ref|ZP_07272078.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
gi|302428631|gb|EFL00447.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
Length = 1178
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 487 MPVRRRKSIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 537
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 538 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 597
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I+ ++ ++
Sbjct: 598 LYSARMAAPGHAFGPDTPWQR---ELEDAFPYAETPDQLTTISEVKSDMEKTVP 648
>gi|318060504|ref|ZP_07979227.1| transcription-repair coupling factor [Streptomyces sp. SA3_actG]
gi|318077247|ref|ZP_07984579.1| transcription-repair coupling factor [Streptomyces sp. SA3_actF]
Length = 1178
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 487 MPVRRRKSIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 537
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 538 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 597
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I+ ++ ++
Sbjct: 598 LYSARMAAPGHAFGPDTPWQR---ELEDAFPYAETPDQLTTISEVKSDMEKTVP 648
>gi|228966014|ref|ZP_04127081.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228793684|gb|EEM41220.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 158
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 82/152 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI M + +P GK ++ +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGEKQQYYVIKMSISNMQVMIPTGKILNSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKTLN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDVYKFLVSELELIKGITENQIKSF 157
>gi|333026450|ref|ZP_08454514.1| putative transcriptional-repair coupling factor [Streptomyces sp.
Tu6071]
gi|332746302|gb|EGJ76743.1| putative transcriptional-repair coupling factor [Streptomyces sp.
Tu6071]
Length = 1181
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 490 MPVRRRKSIDPLTLETGDYIVHVQHGVGRYIEMVQRTVQGATREYLV---------VEYA 540
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 541 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 600
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I+ ++ ++
Sbjct: 601 LYSARMAAPGHAFGPDTPWQR---ELEDAFPYAETPDQLTTISEVKSDMEKTVP 651
>gi|239981759|ref|ZP_04704283.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
gi|291453617|ref|ZP_06593007.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
gi|291356566|gb|EFE83468.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
Length = 1177
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 63/174 (36%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ +G++IV+ HGVG E+ ++ V G E+ + ++
Sbjct: 487 MPTRRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLL---------VEYA 537
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 538 PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 597
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ + ++ + + + + I ++ ++
Sbjct: 598 LYSARMAAPGHAFGQDTPWQR---ELEDAFPYMETPDQLSTIAEVKDDMEKTVP 648
>gi|312194532|ref|YP_004014593.1| transcription-repair coupling factor [Frankia sp. EuI1c]
gi|311225868|gb|ADP78723.1| transcription-repair coupling factor [Frankia sp. EuI1c]
Length = 1215
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 60/174 (34%), Gaps = 18/174 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G+ +V+ AHGVG E+ + VAG K E+ V+ + K L VP
Sbjct: 521 MPSRRRKGIDPLALAVGDLVVHEAHGVGRYIEMVTRTVAGAKREYLVLEYAKGD-RLYVP 579
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ V G+A + + ++ E++R
Sbjct: 580 TDALEQVTRY--------------VGGEAPTLDRIGGADWAKRKSRARKAVKEIAGELIR 625
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + AI+ ++ ++
Sbjct: 626 LYSARMAAPGYAFGPDNPWQR---ELEDAFPFRETPDQLSAIDEVKRDMERAVP 676
>gi|228924323|ref|ZP_04087573.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228835349|gb|EEM80740.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 158
Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 83/152 (54%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K ++FVI KM + +P GK ++ +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYFVIKMSISKMQVMIPTGKIVNSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIHIFHHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYRFLVSELELIKGITENQIKSF 157
>gi|313679234|ref|YP_004056973.1| CarD family transcriptional regulator [Oceanithermus profundus DSM
14977]
gi|313151949|gb|ADR35800.1| transcriptional regulator, CarD family [Oceanithermus profundus DSM
14977]
Length = 164
Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 71/161 (44%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +R G+ +V P +GVG + I ++ VAG+ ++ + F + VPV +G+R
Sbjct: 2 KEYRPGDKVVLPPYGVGVVAGIAQRTVAGIGRSYYQVEFPGSRSKAFVPVESPQQVGLRP 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V + L+ ++ W+ R + ++ G+ IA + L R D++
Sbjct: 62 ALTRDEVPQILEHLKHGQLPLPKQWAARHRRVTEILSEGNPHRIAILAGQLRRWDAERGL 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+RQ + A+N + E+A I+ E + E +
Sbjct: 122 PDLDRQAFRRAINLLAEEVAQALEITVSETRVVFEEAWGEE 162
>gi|295694758|ref|YP_003587996.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
gi|295410360|gb|ADG04852.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
Length = 1174
Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q + G+++V+ HG+G I+ E+ G+ ++ L VP+ + +
Sbjct: 494 QDLKVGDYVVHVNHGIGQYMGIQTLEIEGIHKDYL-YIRYAGNDKLYVPIDQIDQVQKYI 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
E K + + ++ S E+V+ + + P
Sbjct: 553 GGE------------DKQPKLYHLGGTEWAKVKNRVRSSIRDIAEELVKLYAQRMASPGH 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S ++ M + + +AI I+ ++
Sbjct: 601 AFSPDTPWQKEFEAM---FPYRETPDQLKAIEEIKRDMEQPRP 640
>gi|332298572|ref|YP_004440494.1| transcriptional regulator, CarD family [Treponema brennaborense DSM
12168]
gi|332181675|gb|AEE17363.1| transcriptional regulator, CarD family [Treponema brennaborense DSM
12168]
Length = 217
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 75/160 (46%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ F + IVYP+ GVG ITEI E++ L ++VI + M + VPV + ++G+R
Sbjct: 11 KMTFEVNQKIVYPSQGVGKITEITEKKFKDNVLPYYVIYLEVSDMTVMVPVNRVEELGIR 70
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ +A++++ + + W R Q + G + IA +VR L+ E
Sbjct: 71 AIVSQQEALQAIEMMGEEVEPVTSDWKLRYQMNLDLLKKGSVSDIATIVRCLYHRSKVKE 130
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
ER+LY+SA + EI+ + E L+ L
Sbjct: 131 LPILERKLYDSAKKLLEDEISFALEKTPKEVETLLLAKLE 170
>gi|302542946|ref|ZP_07295288.1| transcription-repair coupling factor [Streptomyces hygroscopicus
ATCC 53653]
gi|302460564|gb|EFL23657.1| transcription-repair coupling factor [Streptomyces himastatinicus
ATCC 53653]
Length = 1177
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G+ IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 487 MPARRRKTIDPLTLEAGDFIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 537
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 538 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 597
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 598 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLTTIGEVKEDMEKSVP 648
>gi|229119116|ref|ZP_04248445.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3]
gi|228664336|gb|EEL19848.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3]
Length = 158
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 80/152 (52%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E++G K ++VI M + +P GK + +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKELSGKKQLYYVIKMSISNMQVMIPTGKILSSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + +++ + + W +R + KI +G++ AEV+RDL R + +
Sbjct: 66 IDILALTHIIQIFQHGESDELLPWKQRHKVNTDKIKTGEIQKGAEVIRDLIRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A +V E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYKFLVSELELIKGITEKQIKSF 157
>gi|311743167|ref|ZP_07716975.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
15272]
gi|311313847|gb|EFQ83756.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
15272]
Length = 1169
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-----DKDKM 55
M ++++ G+H+V+ HGVG E+ + V G E+ VI + +
Sbjct: 486 MPTRRRKQVDPLELSPGDHVVHEQHGVGRYVELVNRVVQGAAREYLVIEYGSSKRGQPAD 545
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L +P+ + I E+ ++R + W+ R K
Sbjct: 546 RLFLPMDQLDQISRYVGGESPTLDRL----------GGSDWTNR----KNKARKAVRQIA 591
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ S ++ +++ + A V + + I ++ ++
Sbjct: 592 GELIKLYAARQSTQGHAFGPDTPWQA---ELEDAFAYVETPDQLSTIEEVKRDMERVVP 647
>gi|304439404|ref|ZP_07399316.1| CarD family transcriptional regulator [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372186|gb|EFM25780.1| CarD family transcriptional regulator [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 160
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 81/142 (57%), Gaps = 1/142 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +VYP HG G I +I+++E+ G ++++ +M + VPV +A +IG+R +
Sbjct: 1 MYSIGDKVVYPMHGAGVIVDIEKKEILGEIRNYYILKMPIQEMKVMVPVEQAEEIGVRPI 60
Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ L+ ++ K + W+RR + KI +GD++ IA+VVR L R D++
Sbjct: 61 YGTEEMKEVLETLQSDKKLDMPSNWNRRFRFSTEKIKTGDIVEIAKVVRCLVRMDNEKNL 120
Query: 132 SYSERQLYESALNRMVREIAAV 153
S ER+L +A +V E+A +
Sbjct: 121 STGERKLLNNAKKIIVSEMALI 142
>gi|321314162|ref|YP_004206449.1| putative transcriptional regulator [Bacillus subtilis BSn5]
gi|320020436|gb|ADV95422.1| putative transcriptional regulator [Bacillus subtilis BSn5]
Length = 158
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 79/153 (51%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F+ G++IVYP HG G I I+E+E K +++VI M + +P K + +R
Sbjct: 5 DMFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRP 64
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+++ ++ + + + + W +R + KI +G++ AEVVRDL R +
Sbjct: 65 VTDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQEGAEVVRDLMRMKKEKAL 124
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164
+ SE+++ ++A ++ E+ + I+E + +
Sbjct: 125 NASEKKMLDNAYEFLISELEVIKGITEKQIKSF 157
>gi|239930800|ref|ZP_04687753.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
ATCC 14672]
gi|291439165|ref|ZP_06578555.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
ATCC 14672]
gi|291342060|gb|EFE69016.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
ATCC 14672]
Length = 1185
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G+HIV+ HGVG E+ ++ V G E+ V ++
Sbjct: 494 MPARRRKTIDPLTLEAGDHIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 544
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 545 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 604
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 605 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKSVP 655
>gi|295838353|ref|ZP_06825286.1| transcription-repair coupling factor [Streptomyces sp. SPB74]
gi|295826975|gb|EDY42784.2| transcription-repair coupling factor [Streptomyces sp. SPB74]
Length = 1108
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ TG++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 490 MPVRRRKSIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 540
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 541 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 600
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I+ ++ ++
Sbjct: 601 LYSARMAAPGHAFGPDTPWQR---ELEDAFPYAETPDQLTTISEVKSDMEKTVP 651
>gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str.
Al Hakam]
gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str.
Al Hakam]
Length = 1207
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 513 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 571
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 572 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 619
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 620 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 675
>gi|226360810|ref|YP_002778588.1| hypothetical protein ROP_13960 [Rhodococcus opacus B4]
gi|226239295|dbj|BAH49643.1| hypothetical protein [Rhodococcus opacus B4]
Length = 169
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 69/155 (44%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +YP HG T+T++ + + E+ + + +++PV KA +G+R
Sbjct: 3 LNIGDIFLYPHHGSVTVTKLTTRMFKDLPTEYVQFEVAQTGLSIEIPVAKAEALGVRNAI 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VER ++RG + WSRR + K+ G + ++EV+RDL + S
Sbjct: 63 SNDEVERVFDILRGPTVDDPSNWSRRYKANQEKLTVGGIFTVSEVIRDLMTRAQEKPLSA 122
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
E++ E A+ ++ E+ + IE
Sbjct: 123 GEKRQLEHAMQLVISELVLAMKSDPDDTRRRIEEI 157
>gi|118478884|ref|YP_896035.1| CarD family transcriptional regulator [Bacillus thuringiensis str.
Al Hakam]
gi|118418109|gb|ABK86528.1| transcriptional regulator, CarD family [Bacillus thuringiensis str.
Al Hakam]
Length = 167
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++
Sbjct: 16 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 75
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 76 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 135
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 136 SEKKMLDNAHEFLISELGLIEGITENQIKSF 166
>gi|302560241|ref|ZP_07312583.1| transcription-repair coupling factor [Streptomyces griseoflavus
Tu4000]
gi|302477859|gb|EFL40952.1| transcription-repair coupling factor [Streptomyces griseoflavus
Tu4000]
Length = 1187
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G+HIV+ HGVG E+ ++ V G E+ V ++
Sbjct: 496 MPARRRKTIDPLTLEAGDHIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 546
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 547 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 606
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 607 LYSARMAAPGHAFGADSPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKSVP 657
>gi|194015928|ref|ZP_03054543.1| CarD family transcriptional regulator [Bacillus pumilus ATCC 7061]
gi|194012283|gb|EDW21850.1| CarD family transcriptional regulator [Bacillus pumilus ATCC 7061]
Length = 153
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 74/152 (48%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E + K +++VI M + +P K +R +
Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEFSDEKQQYYVINMSISHMKVMIPTRKISGSRIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ + + + + + W R KI +G + AEVVRDL R + +
Sbjct: 61 TDILALNNVMDIFQHGESDQIPTWKERHTINTNKIKTGSIQDGAEVVRDLMRMKKEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ + A ++ E+ + I+E + +
Sbjct: 121 ASEKKMLDDAHEFLLSELEVIKGITEKQIKSF 152
>gi|228943459|ref|ZP_04105903.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228976286|ref|ZP_04136757.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228783390|gb|EEM31498.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816239|gb|EEM62420.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 158
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 84/152 (55%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E +G K +++VI KM + +P GK ++ +R +
Sbjct: 6 MFQIGDNIVYPMHGAGIIEAIEEKEFSGKKQQYYVIKMSISKMQVMIPKGKILNSNIRPV 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + K W +R + KI +G++ AEVVRDL R + +
Sbjct: 66 TDILALKHIIHIFQHEESCKLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALN 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L + A ++ E+ + I+E + +
Sbjct: 126 TSEKKLLDDAYKFLISELELIKGITENQIKSF 157
>gi|220918135|ref|YP_002493439.1| transcriptional regulator, CarD family [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219955989|gb|ACL66373.1| transcriptional regulator, CarD family [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 404
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 76/164 (46%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +VYP GV + + +++AG KLE + ++D + VP GK IG+
Sbjct: 26 AADELKPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTREEDGAAVMVPKGKVPSIGL 85
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
R+++ +E + W R ++ ++ +G ++ +AEVV+ LH
Sbjct: 86 RRVATGAQMEGVFHYLGAVYDDPELDWKVRHRDNADRLIAGGVLGVAEVVKGLHSLSRLR 145
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
ER+ Y++A + +V E++ + A + I+ L +
Sbjct: 146 PLPTKEREQYDNARHLLVHEVSVSLGVPPGLAEDYIDYALMPPA 189
>gi|297157723|gb|ADI07435.1| transcription-repair coupling factor [Streptomyces bingchenggensis
BCW-1]
Length = 1200
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ + G+ IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 486 MPARRRKTIDPLSLQAGDFIVHEQHGVGRYIEMVQRTVQGATREYLV---------VEYA 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 537 PAKRGQPGDRLFVPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 596
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 597 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLTTIGEVKEDMEKSVP 647
>gi|90021441|ref|YP_527268.1| transcription-repair coupling protein Mfd [Saccharophagus degradans
2-40]
gi|89951041|gb|ABD81056.1| transcription-repair coupling factor [Saccharophagus degradans
2-40]
Length = 1153
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G +V+ HGVG ++ E G K EF V+ + + L VPV I
Sbjct: 482 TELKIGAPVVHIEHGVGRYLGLQTIEFDGQKDEFLVLEYAN-EAKLYVPVANLHFISRYS 540
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E + S + Q+ K AE++ + ++
Sbjct: 541 GAEDSSAP------------LNRLGSDQWQKAKRKAAEKLRDVAAELLEIYAKRQAREGF 588
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + A ++ + +AI+ + ++ S
Sbjct: 589 QYT---YPKDAYEIFAESFPFEETVDQQQAIDAVRQDMISAQP 628
>gi|134097431|ref|YP_001103092.1| transcription-repair coupling factor [Saccharopolyspora erythraea
NRRL 2338]
gi|291004579|ref|ZP_06562552.1| transcription-repair coupling factor [Saccharopolyspora erythraea
NRRL 2338]
gi|133910054|emb|CAM00166.1| transcription-repair coupling factor [Saccharopolyspora erythraea
NRRL 2338]
Length = 1195
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+ +V+ HG+G E+ ++ V G E+ V L+
Sbjct: 494 MPSRRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRTVGGATREYLV---------LEYA 544
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R ++ + V G+ + + AK AE+V+
Sbjct: 545 SSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKAVKEIAAELVQ 604
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S P ++ ++ + + + AI+ ++ ++
Sbjct: 605 LYAARQSAPGHAFGADTPWQR---ELEDAFPYTETGDQLAAIDEVKADMQRAVP 655
>gi|126729844|ref|ZP_01745657.1| transcription-repair coupling factor [Sagittula stellata E-37]
gi|126709963|gb|EBA09016.1| transcription-repair coupling factor [Sagittula stellata E-37]
Length = 1159
Score = 107 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 22/176 (12%)
Query: 2 TFQQKRD---AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K + Q G+ +V+ HG+G ++ AG E ++ + + L
Sbjct: 468 AKRRKAENFLTEHQSLSPGDLVVHVDHGIGRYMGMEVITAAGSPHECLLLQYA-EDAKLY 526
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+PV + E L + G A Q AK+ +
Sbjct: 527 LPVENIELLSKY-----GHDEGLLDRLGGGA----------WQAKKAKLKERIREMADRL 571
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + A + + AI + +L S
Sbjct: 572 IRIAAERALRKAPML---DPPPGAYESFAARFPYSETDDQLAAIEDVMDDLQSGQP 624
>gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis
DSM 12885]
gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis
DSM 12885]
Length = 1219
Score = 107 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 21/177 (11%), Positives = 56/177 (31%), Gaps = 20/177 (11%)
Query: 2 TFQQKRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T + + + G+++V+ HG+G ++ E+ G+ ++ I + L
Sbjct: 499 TAADRAETQALERLVDLKPGDYVVHVHHGIGRFLGLRTMEIQGVHRDYLTIQYAGGD-RL 557
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP + + +E H A + S + ++ E
Sbjct: 558 YVPTDQIELVQKYVGAEGHQPRLA------------KLGSGEWNKVKQRVKESVRELAGE 605
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + ++ ++ + + + EAI I+ ++
Sbjct: 606 LLALYAARQTLRGHAFGPDTPWQR---QFEDAFPYQETPDQLEAIAAIKADMERPVP 659
>gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str.
A1055]
Length = 1176
Score = 107 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|228992334|ref|ZP_04152265.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442]
gi|228767359|gb|EEM15991.1| Transcriptional regulator, CarD [Bacillus pseudomycoides DSM 12442]
Length = 158
Score = 107 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E++G K +++VI M + +P GK + +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMEVMIPTGKILSSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + R + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALTRIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKIQEGAEVVRDLMRMQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIKGITENQMKSF 157
>gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
Length = 1176
Score = 107 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 1176
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
Length = 1176
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W]
gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820]
gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus anthracis CI]
gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W]
gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820]
gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar
anthracis str. CI]
Length = 1176
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str.
Sterne]
gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Bacillus anthracis str. A2012]
gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str.
A0488]
gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str.
A0442]
gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str.
A0193]
gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str.
A0465]
gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str.
A0389]
gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str.
A0174]
gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis
Tsiankovskii-I]
gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
684]
gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str.
A0248]
gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str.
CNEVA-9066]
gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str.
Western North America USA6153]
gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str.
Kruger B]
gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str.
Vollum]
gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str.
Australia 94]
gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str.
Sterne]
gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str.
A0488]
gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str.
A0193]
gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str.
A0442]
gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str.
A0389]
gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str.
A0465]
gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str.
A0174]
gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis
Tsiankovskii-I]
gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
684]
gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str.
A0248]
Length = 1176
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|302551963|ref|ZP_07304305.1| transcription-repair coupling factor [Streptomyces
viridochromogenes DSM 40736]
gi|302469581|gb|EFL32674.1| transcription-repair coupling factor [Streptomyces
viridochromogenes DSM 40736]
Length = 1177
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HGVG E+ ++ V G E+ V ++
Sbjct: 486 MPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRVVQGATREYLV---------VEYA 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +E+ K V G+A + + A+ A++++
Sbjct: 537 PAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK 596
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + I ++ ++
Sbjct: 597 LYSARMAAPGHAFGADTPWQR---ELEDAFPYAETPDQLTTIAEVKEDMEKTVP 647
>gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L]
gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L]
Length = 1176
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|228998394|ref|ZP_04157985.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17]
gi|229005881|ref|ZP_04163575.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4]
gi|228755345|gb|EEM04696.1| Transcriptional regulator, CarD [Bacillus mycoides Rock1-4]
gi|228761315|gb|EEM10270.1| Transcriptional regulator, CarD [Bacillus mycoides Rock3-17]
Length = 158
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 80/151 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E++G K +++VI M + +P GK + +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEISGEKQQYYVIKMSASNMEVMIPTGKILSSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALTHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKIQEGAEVVRDLMRMQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIKGITENQMKSF 157
>gi|296128756|ref|YP_003636006.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
20109]
gi|296020571|gb|ADG73807.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
20109]
Length = 1214
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 16/178 (8%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMC 56
M +++ R G+ +V+ HGVG E+ ++ + E+ V+ + K
Sbjct: 513 MPSRRRNVVDPLQLRPGDFVVHEQHGVGRFVELVQRTIGSGAAAATREYLVVEYASSK-- 570
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
G R +++ K V G+A M Q+ + A
Sbjct: 571 -------RGQPGDRLYVPTDQLDQVTKYVGGEAPTLNRMGGADWQKTKGRARKAVKEIAA 623
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E++R + P ++ ++ + A V + + I ++ ++
Sbjct: 624 ELIRLYSARMATPGHAFGPDTPWQR---ELEDAFAYVETPDQLATIEEVKADMEKTVP 678
>gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187]
gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1]
gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187]
gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1]
gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
Length = 1176
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241]
gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241]
gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 1176
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis
serovar konkukian str. 97-27]
Length = 1178
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 484 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 542
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 543 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 590
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 591 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 646
>gi|229075538|ref|ZP_04208525.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18]
gi|229098087|ref|ZP_04229035.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29]
gi|229104182|ref|ZP_04234854.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28]
gi|229117105|ref|ZP_04246484.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3]
gi|228666273|gb|EEL21736.1| Transcriptional regulator, CarD [Bacillus cereus Rock1-3]
gi|228679199|gb|EEL33404.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-28]
gi|228685278|gb|EEL39208.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-29]
gi|228707517|gb|EEL59703.1| Transcriptional regulator, CarD [Bacillus cereus Rock4-18]
Length = 158
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 82/151 (54%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+AG K +++VI + M + +P GK ++ +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSANNMEIMIPEGKILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 1183
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 489 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 547
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 548 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 595
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 596 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 651
>gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
Length = 1183
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 489 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 547
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 548 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 595
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 596 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 651
>gi|229197758|ref|ZP_04324477.1| Transcriptional regulator, CarD [Bacillus cereus m1293]
gi|228585703|gb|EEK43802.1| Transcriptional regulator, CarD [Bacillus cereus m1293]
Length = 158
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 80/151 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK + +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILSSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALIHIINIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|256824567|ref|YP_003148527.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius
DSM 20547]
gi|256687960|gb|ACV05762.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius
DSM 20547]
Length = 1244
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 24/180 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
M ++++ G+ IV+ HGVG E+ ++ V G E+ V+ + +
Sbjct: 544 MPSRRRKMVDPLQLNPGDFIVHEQHGVGRFIEMVQRTVGGATREYLVLEYASSKRGQPAD 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP + I EA L + G +K S +
Sbjct: 604 RLFVPTDQLDQITRYVGGEAPS----LNRLGGAD--------------WSKTKSKARKHV 645
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +L + S + +S R + A + + + +I ++ ++
Sbjct: 646 KQIANELIQLYSARMATQGHAFAPDSPWQRELEDTFAYIETTDQLSSIEEVKADMEKSVP 705
>gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 1183
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 489 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 547
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 548 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 595
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 596 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 651
>gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 1186
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 492 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 550
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 551 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 598
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 599 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 654
>gi|161506855|ref|YP_001576809.1| transcriptional repair coupling factor [Lactobacillus helveticus
DPC 4571]
gi|160347844|gb|ABX26518.1| transcriptional repair coupling factor [Lactobacillus helveticus
DPC 4571]
Length = 1165
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGVKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 ASE------------GKTPHINKLGGSEWAKIKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 596 AFSPDDDLQ---KQFEDAFPYAETPDQLRSIKEIKEDMEKPKP 635
>gi|159899175|ref|YP_001545422.1| transcription-repair coupling factor [Herpetosiphon aurantiacus
ATCC 23779]
gi|159892214|gb|ABX05294.1| transcription-repair coupling factor [Herpetosiphon aurantiacus
ATCC 23779]
Length = 1207
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 22/179 (12%)
Query: 2 TFQQKRDAM------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
T +K+ Q + G+++V+ HG+ + E +G + EF V+ +
Sbjct: 488 TRARKQRTESDRTAFLQSLKVGDYVVHIEHGIAQYEGLSRIEASGAEREFLVLRYA-SGD 546
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + + + + G + +R RA + DL A
Sbjct: 547 KLYVPVDQVDRVSRYIGAGEG---KPTLTRLGTSDWERAKRKVRADVEELATELLDLYAA 603
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++V + + + + + AI ++ ++ +
Sbjct: 604 RQLVEGFAYSSDTSWQ------------RELEDSFPYTETDDQLRAIEEVKSDMENTRP 650
>gi|323465804|gb|ADX69491.1| Transcriptional repair coupling factor [Lactobacillus helveticus
H10]
Length = 1165
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGVKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 ASE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + ++ + +I I+ ++
Sbjct: 596 AFSPDDDLQ---KQFEDAFPYAETLDQLRSIKEIKEDMEKPKP 635
>gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|42523769|ref|NP_969149.1| putative CarD-like transcriptional regulator [Bdellovibrio
bacteriovorus HD100]
gi|39575976|emb|CAE80142.1| putative CarD-like transcriptional regulator [Bdellovibrio
bacteriovorus HD100]
Length = 164
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q F G++ VYP +GV + I+ +E+ G K F+ + + + +P G+R
Sbjct: 2 QTFDVGDNAVYPGYGVVKVVSIETKEMLGTKTTFYNMQLVDTGLKIMIPTTNVKSAGLRP 61
Query: 72 LSEAHFVERALKLVRGKA-RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ R + +++ K ++ W+RR +EY KI +G + IAEV+RDL + E
Sbjct: 62 IISKSEASRVVGILKEKDIKIDNQTWNRRYREYMEKIKTGSVFEIAEVLRDLFLLKADKE 121
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPE 160
S+ ER++ +SA + +++E+ + S+ E
Sbjct: 122 LSFGERKMLDSARSLLLKEL--TLATSQEE 149
>gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis
BMB171]
gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis
BMB171]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|49479453|ref|YP_037723.1| CarD family transcriptional regulator [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|206976148|ref|ZP_03237057.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97]
gi|217961056|ref|YP_002339624.1| transcriptional regulator, CarD family [Bacillus cereus AH187]
gi|222097108|ref|YP_002531165.1| transcriptional regulator, card family [Bacillus cereus Q1]
gi|228986740|ref|ZP_04146870.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229140266|ref|ZP_04268823.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26]
gi|49331009|gb|AAT61655.1| transcriptional regulator, CarD family [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|206745602|gb|EDZ57000.1| transcriptional regulator, CarD family [Bacillus cereus H3081.97]
gi|217063672|gb|ACJ77922.1| transcriptional regulator, CarD family [Bacillus cereus AH187]
gi|221241166|gb|ACM13876.1| transcriptional regulator, CarD family [Bacillus cereus Q1]
gi|228643199|gb|EEK99473.1| Transcriptional regulator, CarD [Bacillus cereus BDRD-ST26]
gi|228773071|gb|EEM21507.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 158
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264]
gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
C-125]
gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
C-125]
Length = 1181
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G I+ E+ G+ ++ I + + L VPV + +
Sbjct: 499 SELKVGDLVVHTNHGIGKYLGIETLEINGVHKDYLHIRYAGND-KLYVPVEQIDQVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E K ++ ++ ++ S ++++ ++
Sbjct: 558 GAE------------DKDPKLYSLGKSDWKKVKRRVQSSVEDIADDLIKLYAEREASKGF 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ E A + + AI I+ ++ +
Sbjct: 606 AFAPDG-PEQAE--FEASFPYQETEDQLRAIQEIKEDMEKERP 645
>gi|295425671|ref|ZP_06818358.1| transcription-repair coupling factor [Lactobacillus amylolyticus
DSM 11664]
gi|295064687|gb|EFG55608.1| transcription-repair coupling factor [Lactobacillus amylolyticus
DSM 11664]
Length = 1165
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGVKRD-YITITYQHGDQLFVPADQLRLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ +S+
Sbjct: 548 ASE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLINLYAARESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + V + + +I I+ ++
Sbjct: 596 AFSPDDELQR---KFDDAFPYVETPDQLRSIKEIKADMEKPKP 635
>gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
39073]
gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
39073]
Length = 1183
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 18/174 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + + + G+++V+ HG+G +++ +V G+K ++ +I + L VPV
Sbjct: 492 PREGSKISSFTDLKEGDYVVHVHHGIGRYLGLQQLDVGGVKKDYLLIQYAGKD-RLYVPV 550
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + L + G K+ S A+ E+ ++
Sbjct: 551 DQVSLVQKY--VGGEGHVPRLYRLGGNE--------------WNKVKSRVQEAVQEMAQE 594
Query: 122 LHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
L ++ E ++ R + + AI ++ ++
Sbjct: 595 LLDLYARREAIPGHAFGPDTPWQREFEEAFPYTETPDQLRAIAEVKADMEKPRP 648
>gi|260102336|ref|ZP_05752573.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
20075]
gi|260083845|gb|EEW67965.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
20075]
Length = 1165
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGVKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 ASE------------GKTPHINKLGGSEWAKIKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 596 AFSPDDDLQ---KQFEDAFPYAETPDQLRSIKEIKEDMEKPKP 635
>gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579]
gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579]
gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|47567932|ref|ZP_00238639.1| CarD-like transcriptional regulator [Bacillus cereus G9241]
gi|47555410|gb|EAL13754.1| CarD-like transcriptional regulator [Bacillus cereus G9241]
Length = 158
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 80/151 (52%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK + +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILSSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DITALIHIIDIFQHGESDRLLTWKQRYKLNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
4222]
gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
4222]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
Length = 1176
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402
065]
Length = 1168
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+ +V+ HG+G IK+ E+ G K ++ L VPV +
Sbjct: 494 KIKSFTELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYL-ELIYHSDDKLYVPVEQLDM 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GK + S + K+ ++V+
Sbjct: 553 VQRYIGSE------------GKKPKVSKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRA 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S YS+ +++ + E + + AI I+ ++ S
Sbjct: 601 SLKGYKYSDDTVWQ---KQFEEEFPYEETPDQLLAIEDIKKDMESPKP 645
>gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134]
gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134]
gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 1176
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842]
gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842]
Length = 1176
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|332971077|gb|EGK10047.1| transcription-repair coupling factor [Desmospora sp. 8437]
Length = 1181
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 62/168 (36%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q + G+++V+ HG+G + +V G+ ++ +I + + L VP+ +
Sbjct: 493 KIKDYQELQPGDYVVHVNHGIGRYAGTETLDVGGIHKDYLLIQYAGND-KLYVPIEQIDQ 551
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K ++ + K+ S +++++ +
Sbjct: 552 VQKYLGSE------------EKTPKVYSLGGSEWSKVKNKVRSSVQDIASDLIKLYAKRQ 599
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+ ++S Y+ + + + + +I I+ ++
Sbjct: 600 SERGHAFSPDTPYQREFDAL---FPYEETADQLRSIEEIKKDMEKTQP 644
>gi|165870992|ref|ZP_02215643.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0488]
gi|167641498|ref|ZP_02399747.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0193]
gi|170709170|ref|ZP_02899595.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0389]
gi|164713203|gb|EDR18729.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0488]
gi|167510580|gb|EDR85977.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0193]
gi|170125925|gb|EDS94827.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0389]
Length = 153
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 81/152 (53%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R +
Sbjct: 1 MFQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 61 TDIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 121 ASEKKMLDNAHEFLISELGLIEGITENQIKSF 152
>gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
Length = 1176
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|328463460|gb|EGF35111.1| transcription-repair coupling factor [Lactobacillus helveticus MTCC
5463]
Length = 1055
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGVKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 ASE------------GKTPHINKLGGSEWAKIKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 596 AFSPDDDLQ---KQFEDAFPYAETPDQLRSIKEIKEDMEKPKP 635
>gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 1067
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 373 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 431
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 432 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 479
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 480 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 535
>gi|320161444|ref|YP_004174668.1| transcription-repair coupling factor [Anaerolinea thermophila
UNI-1]
gi|319995297|dbj|BAJ64068.1| transcription-repair coupling factor [Anaerolinea thermophila
UNI-1]
Length = 1129
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 58/167 (34%), Gaps = 16/167 (9%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+A F+ G++IV+ +G+G + + V G++ E+ + + VPV +A +
Sbjct: 450 EAEYTDFKVGDYIVHVDYGIGRFAGLSRRTVDGVEREYL-AIEYEGGDTIFVPVYQADRL 508
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
+L + G ++ L E++ +
Sbjct: 509 TRY--VGPSGETPSLTHLGGTE----------WASVKQRVRESVLEVAQELLELYAKRQV 556
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S +++ + + + + +AI ++ ++
Sbjct: 557 AKGHAFSPDTMWQ---KELEASFPYIETEDQIKAIQAVKRDMERPRP 600
>gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
Length = 1170
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + + G+++V+ HG+G +K V G ++ V+ + + L VP +
Sbjct: 496 KISSIDELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYAGED-KLYVPTDQFNL 554
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + K + ++ K+ ++ +
Sbjct: 555 VQKYIGA------------DNKPPKLYKLGGNDWKKVKQKVKESVKEMAIGLLELYAERE 602
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S+S+ +++ + + +AI ++ ++ S +
Sbjct: 603 TIKGYSFSDDTVWQ---KEFEEAFPYEETPDQLKAIEEVKNDMESATP 647
>gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
Length = 1176
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETDDQLRSIEEIKKDMERGRP 644
>gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
Length = 1176
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
Length = 1176
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
200]
gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
200]
Length = 1176
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 644
>gi|119715169|ref|YP_922134.1| transcription-repair coupling factor [Nocardioides sp. JS614]
gi|119535830|gb|ABL80447.1| transcription-repair coupling factor [Nocardioides sp. JS614]
Length = 1224
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 60/179 (33%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF-----DKDKM 55
M ++KR G+++V+ HGVG E+K++EV G E+ V+ +
Sbjct: 526 MPARRKRQIDPLELSAGDYVVHEQHGVGRFVEMKQREVGGAVREYLVLEYGASKRGGPPD 585
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP + E ++R W++R +
Sbjct: 586 RLYVPADALDQVTRYVGGEQPSLDRL----------GGGDWTKR----KNRARKAVREIA 631
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE+++ + ++ ++ + + + ++ ++ ++
Sbjct: 632 AELIKLYAARQATRGHAFGPDTPWQR---ELEDAFPFHETPDQLSTVDEVKGDMMRTVP 687
>gi|192358851|ref|YP_001982241.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
Ueda107]
gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
Ueda107]
Length = 1184
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G +V+ HGVG ++ V EF + + L VPV I
Sbjct: 513 TELKIGAPVVHIDHGVGRYRGLETITVDNQTNEFLTLEYAD-DAKLYVPVTSLHLISRYS 571
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E + S Q+ K AE++ R ++
Sbjct: 572 GAEDDLAP------------LHKLGSESWQKAKRKAAEQIRDTAAELLEVYARRAARKGF 619
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + ++A + + AI + ++ S
Sbjct: 620 AFPD---PQTAYAAFSASFPFEETPDQQRAIEAVVKDMLSPKP 659
>gi|300790028|ref|YP_003770319.1| transcription-repair coupling factor [Amycolatopsis mediterranei
U32]
gi|299799542|gb|ADJ49917.1| transcription-repair coupling factor [Amycolatopsis mediterranei
U32]
Length = 1184
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ ++G+++V+ HG+G E+ ++ VAG E+ + L+
Sbjct: 485 MPSRRRNAVDPLALKSGDYVVHEQHGIGRFVEMVQRTVAGATREYLL---------LEYG 535
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R ++ K V G+ + + A+ AE+V+
Sbjct: 536 SSKRGHPGDRLFVPTDQLDEVSKYVGGELPTLNKLGGSDWKNTKARAKKAVKEIAAELVQ 595
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + AI+ ++ ++
Sbjct: 596 LYAARQAAPGHAFGPDTPWQ---GELEDAFPFTETNDQLAAIDEVKADMERGVP 646
>gi|149376584|ref|ZP_01894344.1| transcription-repair coupling protein Mfd [Marinobacter algicola
DG893]
gi|149359102|gb|EDM47566.1| transcription-repair coupling protein Mfd [Marinobacter algicola
DG893]
Length = 1038
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 24/180 (13%)
Query: 3 FQQKRDAMR--------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++++ R G +V+ HGVG ++ V G EF ++ +
Sbjct: 352 RRREKPTEADDAGYRDLSELRIGAPVVHIDHGVGRYQGLETITVEGEASEFLMLEYAG-G 410
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I S+ + + R K
Sbjct: 411 SKLYVPVSSLHLISRYTGSDTDHAP------------LHKLGTDRWSNAKQKALEKIRDT 458
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ R +++ ++ + + A + + AI + ++ S+
Sbjct: 459 AAELLDVYARREARKGFAFED---PKEAYRAFAAGFPFEETPDQQAAIEAVFEDMVSEKP 515
>gi|228916274|ref|ZP_04079844.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843472|gb|EEM88550.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 158
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+AG K +++VI M + +P G+ ++ +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGEILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|311066998|ref|YP_003971921.1| putative transcriptional regulator [Bacillus atrophaeus 1942]
gi|310867515|gb|ADP30990.1| putative transcriptional regulator [Bacillus atrophaeus 1942]
Length = 153
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 80/152 (52%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E+E + K +++VI M + +P K + +R +
Sbjct: 1 MFQIGDNIVYPMHGAGIIEAIEEKEYSEEKQQYYVIKMSISNMQVMIPTRKILSSSIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + + W +R + KI +G++ AEVVRDL R + +
Sbjct: 61 TDILALKHIIHIFQHGESDRLLPWKQRYKVNTNKIKTGEIQEGAEVVRDLMRMKKEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 121 SSEKKMLDNAYEFLISELEVIKGITENQIKSF 152
>gi|229917410|ref|YP_002886056.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
gi|229468839|gb|ACQ70611.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
Length = 1175
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 22/183 (12%), Positives = 62/183 (33%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDAMR---------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
+T ++++ Q + +++V+ HG+G IK EV G+ ++ + +
Sbjct: 474 VTKRKRQTKNLTNAERIKSYQELKPNDYVVHVHHGIGKYLGIKTIEVGGIHQDYLHLVYA 533
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV + + +E GK + ++ +K+
Sbjct: 534 G-DDALYVPVDQIDLVQKYVGAE------------GKEPKIYKLGGTEWKKVKSKVAKSV 580
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ ++ ++ + + + + + +I I+ ++
Sbjct: 581 KDIADELIKLYAAREASVGFAFPPD---DEEMGQFESSFPYAETEDQVRSIAEIKADMER 637
Query: 172 KSS 174
Sbjct: 638 SRP 640
>gi|84497836|ref|ZP_00996633.1| putative transcriptional-repair coupling factor [Janibacter sp.
HTCC2649]
gi|84381336|gb|EAP97219.1| putative transcriptional-repair coupling factor [Janibacter sp.
HTCC2649]
Length = 1204
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 62/174 (35%), Gaps = 10/174 (5%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+ +V+ HGVG E+ ++ V G E+ V+ +
Sbjct: 504 MPSRRRNQVDPLQLKPGDFVVHEQHGVGKFVEMMQRTVQGATREYLVLEYAPGTRGKHSQ 563
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
R +++ + V G+ M + +K AE+++
Sbjct: 564 PD-------RLFVPTDQLDQITRYVGGEQPTLNKMGGSDWKTTKSKARRYVKQIAAELIQ 616
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S+ ++ + A + + + +I+ ++ ++ +
Sbjct: 617 LYSARMATKGHAFSKDTPWQR---ELEDAFAYIETPDQLSSIDEVKADMEREVP 667
>gi|30263594|ref|NP_845971.1| CarD family transcriptional regulator [Bacillus anthracis str.
Ames]
gi|47528992|ref|YP_020341.1| CarD family transcriptional regulator [Bacillus anthracis str.
'Ames Ancestor']
gi|49186442|ref|YP_029694.1| CarD family transcriptional regulator [Bacillus anthracis str.
Sterne]
gi|52141890|ref|YP_084935.1| CarD family transcriptional regulator [Bacillus cereus E33L]
gi|65320919|ref|ZP_00393878.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD
[Bacillus anthracis str. A2012]
gi|167636360|ref|ZP_02394661.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0442]
gi|170689537|ref|ZP_02880724.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0465]
gi|177652471|ref|ZP_02934938.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0174]
gi|190564601|ref|ZP_03017522.1| transcriptional regulator, CarD family [Bacillus anthracis
Tsiankovskii-I]
gi|196034117|ref|ZP_03101527.1| transcriptional regulator, CarD family [Bacillus cereus W]
gi|196038188|ref|ZP_03105497.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99]
gi|196044624|ref|ZP_03111859.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108]
gi|218904774|ref|YP_002452608.1| transcriptional regulator, CarD family [Bacillus cereus AH820]
gi|225865630|ref|YP_002751008.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102]
gi|227813522|ref|YP_002813531.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC
684]
gi|228928695|ref|ZP_04091731.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228934921|ref|ZP_04097752.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947260|ref|ZP_04109554.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229092619|ref|ZP_04223770.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42]
gi|229123162|ref|ZP_04252368.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201]
gi|229157223|ref|ZP_04285303.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342]
gi|229185880|ref|ZP_04313053.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1]
gi|229602120|ref|YP_002867837.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0248]
gi|254686212|ref|ZP_05150071.1| CarD family transcriptional regulator [Bacillus anthracis str.
CNEVA-9066]
gi|254726022|ref|ZP_05187804.1| CarD family transcriptional regulator [Bacillus anthracis str.
A1055]
gi|254738685|ref|ZP_05196388.1| CarD family transcriptional regulator [Bacillus anthracis str.
Western North America USA6153]
gi|254744757|ref|ZP_05202435.1| CarD family transcriptional regulator [Bacillus anthracis str.
Kruger B]
gi|254753003|ref|ZP_05205039.1| CarD family transcriptional regulator [Bacillus anthracis str.
Vollum]
gi|254759274|ref|ZP_05211300.1| CarD family transcriptional regulator [Bacillus anthracis str.
Australia 94]
gi|301055137|ref|YP_003793348.1| CarD family transcriptional regulator [Bacillus anthracis CI]
gi|30258229|gb|AAP27457.1| transcriptional regulator, CarD family [Bacillus anthracis str.
Ames]
gi|47504140|gb|AAT32816.1| transcriptional regulator, CarD family [Bacillus anthracis str.
'Ames Ancestor']
gi|49180369|gb|AAT55745.1| transcriptional regulator, CarD family [Bacillus anthracis str.
Sterne]
gi|51975359|gb|AAU16909.1| transcriptional regulator, CarD family [Bacillus cereus E33L]
gi|167528287|gb|EDR91064.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0442]
gi|170666494|gb|EDT17270.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0465]
gi|172082145|gb|EDT67212.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0174]
gi|190563918|gb|EDV17882.1| transcriptional regulator, CarD family [Bacillus anthracis
Tsiankovskii-I]
gi|195993191|gb|EDX57149.1| transcriptional regulator, CarD family [Bacillus cereus W]
gi|196024659|gb|EDX63331.1| transcriptional regulator, CarD family [Bacillus cereus 03BB108]
gi|196030596|gb|EDX69194.1| transcriptional regulator, CarD family [Bacillus cereus NVH0597-99]
gi|218535293|gb|ACK87691.1| transcriptional regulator, CarD family [Bacillus cereus AH820]
gi|225788624|gb|ACO28841.1| transcriptional regulator, CarD family [Bacillus cereus 03BB102]
gi|227004447|gb|ACP14190.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC
684]
gi|228597592|gb|EEK55239.1| Transcriptional regulator, CarD [Bacillus cereus BGSC 6E1]
gi|228626287|gb|EEK83034.1| Transcriptional regulator, CarD [Bacillus cereus ATCC 4342]
gi|228660255|gb|EEL15889.1| Transcriptional regulator, CarD [Bacillus cereus 95/8201]
gi|228690772|gb|EEL44548.1| Transcriptional regulator, CarD [Bacillus cereus Rock3-42]
gi|228812507|gb|EEM58834.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824821|gb|EEM70622.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228831014|gb|EEM76615.1| Transcriptional regulator, CarD [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229266528|gb|ACQ48165.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0248]
gi|300377306|gb|ADK06210.1| transcriptional regulator, CarD family [Bacillus cereus biovar
anthracis str. CI]
Length = 158
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 81/151 (53%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G++IVYP G G I I+E+E+AG K +++VI M + +P GK ++ +R ++
Sbjct: 7 FQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + + W +R + KI +G + AEVVRDL R + +
Sbjct: 67 DIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNA 126
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 127 SEKKMLDNAHEFLISELGLIEGITENQIKSF 157
>gi|126664951|ref|ZP_01735934.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17]
gi|126630321|gb|EBA00936.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17]
Length = 1169
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 24/180 (13%)
Query: 3 FQQKRDAMR--------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++++ R G +V+ HGVG ++ V G EF ++ +
Sbjct: 475 RRREKPTELNDDGYRDLSELRIGSPVVHIDHGVGRYQGLETITVEGEASEFLMLGYAGS- 533
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I S+ + + R K
Sbjct: 534 SKLYVPVSSLHLISRYAGSDTEHAP------------LHKLGTDRWNTAKKKALEKIRDT 581
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ R +++ S+ + A + + AI + +++S+
Sbjct: 582 AAELLDVYARREARKGFSF---DNPQEAYRTFAAGFPFEETPDQEVAIQAVLEDMTSERP 638
>gi|291303253|ref|YP_003514531.1| transcription-repair coupling factor [Stackebrandtia nassauensis
DSM 44728]
gi|290572473|gb|ADD45438.1| transcription-repair coupling factor [Stackebrandtia nassauensis
DSM 44728]
Length = 1351
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
M ++K G+++V+ HGVG E+ + V G + E+ VI + +
Sbjct: 658 MPSRRKGGVNPLELSNGDYVVHEQHGVGRYIELVRRTVNGAEREYLVIEYAASKRGQPAD 717
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP + E V + Q+ ++
Sbjct: 718 RLFVPTDALDQLTRYVGGEMPSVHKL--------------GGSDWQKAKSRAKKAVREIA 763
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE+++ + ++ ++ + + + AI+ ++ ++ ++
Sbjct: 764 AELIKLYAARQATEGHAFGPDTPWQR---ELEDAFPYQETPDQAGAIDEVKSDMMGRTP 819
>gi|260887854|ref|ZP_05899117.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
35185]
gi|330838722|ref|YP_004413302.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
35185]
gi|260862360|gb|EEX76860.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
35185]
gi|329746486|gb|AEB99842.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
35185]
Length = 1118
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++R A + G+++V+ HGVG ++ +V G+K ++ I L VP
Sbjct: 415 ASKEERIAHFREINVGDYVVHVNHGVGKYLGVETLDVGGIKKDYLHIK-YGGDDKLFVPT 473
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + SE G+ M + A+ + E++
Sbjct: 474 DQVGLLQKYIGSE------------GETPRLHRMGGTEWVKAKARARASVEDIADELIAL 521
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++S ++ + + AI I+ ++
Sbjct: 522 YAKRRAAKGFAFSPDTPWQR---EFEDAFPYEETPDQRRAIEEIKADMEKPEP 571
>gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
Length = 1010
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 316 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 374
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 375 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 422
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 423 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 478
>gi|237745816|ref|ZP_04576296.1| transcription-repair coupling factor [Oxalobacter formigenes
HOxBLS]
gi|229377167|gb|EEO27258.1| transcription-repair coupling factor [Oxalobacter formigenes
HOxBLS]
Length = 1150
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 49/166 (29%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + + L VPV + I
Sbjct: 478 DLSELKIGDPVVHAHHGIGRYRGLVTVDLGEGETEFLHLQYA-RETKLYVPVSQLHVISR 536
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + L + K I + +L ++
Sbjct: 537 YAGTSPE--DAPLHTLGSGQ--------------WEKARQKAAQKIHDTAAELLDLYARR 580
Query: 130 EKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + AI+ + +++S+
Sbjct: 581 SMRKGFPFPLTKNDYEAFADSFGFEETPDQAAAISAVMEDMTSEKP 626
>gi|313902509|ref|ZP_07835910.1| transcription-repair coupling factor [Thermaerobacter subterraneus
DSM 13965]
gi|313467195|gb|EFR62708.1| transcription-repair coupling factor [Thermaerobacter subterraneus
DSM 13965]
Length = 1196
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ E+ G+ ++ + + L VP + +
Sbjct: 514 DLKPGDYVVHVHHGIGRFLGLRTMEIQGVHRDYLTLQYAGGD-RLYVPTDQIELVQKY-- 570
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
A + L + + ++ E++ S +
Sbjct: 571 VGAEGHQPRLARLGSGE----------WNKVKQRVKESVREMAGELLALYAARQSVRGHA 620
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S ++ + + + AI I+ ++
Sbjct: 621 FSPDTPWQR---QFEDAFPYQETPDQLAAIAAIKADMERPVP 659
>gi|332798184|ref|YP_004459683.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
gi|332695919|gb|AEE90376.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
Length = 1178
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ KR G+++V+ HG+G I+ EV G ++F + + L VP
Sbjct: 495 AKGKRITDFNELDVGDYVVHITHGIGKYLGIESLEVGGHIKDYFTLMYAGGD-KLYVPTN 553
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ I + + + +K E+++
Sbjct: 554 QVDLIQKYVGA------------DDTPPKLHKLGGNEWNKAKSKAKDSIKQMAEELIKLY 601
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S ++S ++ M + + AI ++ ++ S
Sbjct: 602 ATRESVSGFAFSADSPWQKEFQDM---FPYEETPDQLAAIEEVKRDMESPKP 650
>gi|229077333|ref|ZP_04210009.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
gi|228705971|gb|EEL58283.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
Length = 968
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 274 SQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 332
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 333 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 380
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I+ I+ ++
Sbjct: 381 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIDEIKKDMERGRP 436
>gi|117924949|ref|YP_865566.1| transcription-repair coupling factor [Magnetococcus sp. MC-1]
gi|117608705|gb|ABK44160.1| transcription-repair coupling factor [Magnetococcus sp. MC-1]
Length = 1198
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + EV +K +F +I + L VPV +G
Sbjct: 517 DLNEGDAVVHVDHGVGRFGGLVSLEVGQLKNDFLLIIYADGD-KLYVPVENLDRVGKHSS 575
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E +++ +R + AK L E+V + ++
Sbjct: 576 GEEVQLDKL--------------GGKRWAKTRAKARKKILEMAEELVAIQAQREATQGVV 621
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS ++ + +AI + +++S +
Sbjct: 622 YSGPDAL---YQEFASTFPFEETVDQAKAIEAVLEDMASPKA 660
>gi|186475762|ref|YP_001857232.1| transcription-repair coupling factor [Burkholderia phymatum STM815]
gi|184192221|gb|ACC70186.1| transcription-repair coupling factor [Burkholderia phymatum STM815]
Length = 1164
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 27/183 (14%)
Query: 2 TFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
T +++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 463 TGRRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLE-YQ 521
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + I ++ L + K
Sbjct: 522 GDSKLYVPVSQLHVISRYSGADPDSAP--LHALGSGQ--------------WEKAKRKAA 565
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSS 171
I + +L ++ + + + + AI + +++S
Sbjct: 566 QQIRDTAAELLNLYARRAMREGHAFPLDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTS 625
Query: 172 KSS 174
Sbjct: 626 GKP 628
>gi|302530260|ref|ZP_07282602.1| transcription-repair coupling factor [Streptomyces sp. AA4]
gi|302439155|gb|EFL10971.1| transcription-repair coupling factor [Streptomyces sp. AA4]
Length = 1192
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+++V+ HG+G E+ ++ VAG E+ + L+
Sbjct: 493 MPSRRRGAVDPLALKAGDYVVHDQHGIGRFVEMVQRTVAGATREYLL---------LEYA 543
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R ++ + V G+ + + A+ AE+V+
Sbjct: 544 SSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKARAKKAVKEIAAELVQ 603
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++S + + + AI+ ++ ++
Sbjct: 604 LYAARQAAPGHAFGPDTPWQS---ELEDAFPFTETNDQLAAIDEVKADMERGVP 654
>gi|114800270|ref|YP_760685.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
15444]
gi|114740444|gb|ABI78569.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
15444]
Length = 1145
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 23/178 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ G+ +V+ HGVG +K EV G + + + M +
Sbjct: 423 PRRKRKSASFITDATSLTPGDLVVHIDHGVGKYIGLKTLEVTGAPHDCLQLEYAGGDM-I 481
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV I + E L + G + I E
Sbjct: 482 FIPVENIDLISRY---GSEESESQLDRLGGAG--------------WQTRKAKAKKRILE 524
Query: 118 VVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L + + E +E Q + + + AI + +LSS
Sbjct: 525 MAAELMQIAAARELKRAEAVQSGQGLYEEFAARFPYEETDDQLSAIEDVLGDLSSGKP 582
>gi|56962605|ref|YP_174331.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16]
gi|56908843|dbj|BAD63370.1| CarD family transcriptional regulator [Bacillus clausii KSM-K16]
Length = 153
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 78/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG G I I+E ++ K ++++I + M + +P K ++ +R +
Sbjct: 1 MFQIGDNIVYPMHGAGVIEAIEEIDLLEEKQQYYIIKMSINNMKVMIPTSKIVNSRIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ + + + + W +R + KI G++ AEVVRDL R + +
Sbjct: 61 TDILAINHIIHIFQHGESDTLLPWKQRYKVNADKIKMGEMQEGAEVVRDLRRIKKEKTLN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE++L ++A ++ E+ V I++ + +
Sbjct: 121 TSEKELLDNAYEFLLSELEVVKGITDRQIKSF 152
>gi|56418583|ref|YP_145901.1| transcription-repair coupling factor [Geobacillus kaustophilus
HTA426]
gi|56378425|dbj|BAD74333.1| transcription-repair coupling factor [Geobacillus kaustophilus
HTA426]
Length = 1177
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G I+ E+ G+ ++ I + L VPV + +
Sbjct: 499 ELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHI-QYQGGDTLYVPVDQIDQVQKYVG 557
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + ++ K+ S ++++ ++ +
Sbjct: 558 SE------------GKEPKIYKLGGSEWKKVKRKVESSVQDIAEDLIKLYAEREASKGYA 605
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 606 FSPDTEMQR---EFEAAFPYQETEDQLRSIEEIKRDMESDKP 644
>gi|303246473|ref|ZP_07332752.1| transcriptional regulator, CarD family [Desulfovibrio
fructosovorans JJ]
gi|302492183|gb|EFL52058.1| transcriptional regulator, CarD family [Desulfovibrio
fructosovorans JJ]
Length = 170
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + +VYPA GVG + I+ Q + G +FF++ + + L VPV A ++G+R L
Sbjct: 1 MFSEEQLVVYPAQGVGRVERIETQVIGGTSADFFIVRILSNNVTLMVPVANAENVGLRPL 60
Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
A ++ ++ ++ W+RR +EY K+ SGDL +A V+++L
Sbjct: 61 CTAEEGLAIIESLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLKELLLIGQNK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
E S+ ER+L E A + + E+A + E ++I + + +
Sbjct: 121 ELSFGERRLLEQATSLLTLELALALDKDQQEIKDVINEIFADVLAPKPEE 170
>gi|148657760|ref|YP_001277965.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
gi|148569870|gb|ABQ92015.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
Length = 1265
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 19/164 (11%), Positives = 57/164 (34%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+G + G+++V+ HG+ + + V G++ ++ + L VPV + +
Sbjct: 542 RGLKPGDYVVHIEHGIAVYEGLIRRSVGGIERDYL-NLRYAEGDRLYVPVDQIDRVSRYI 600
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + L + + + A+ ++ +L +Q +
Sbjct: 601 GAGDVEPQ--LTRLGTQD--------------WERAKRKARAAVQDLAEELITLYAQRQL 644
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ R + V + + +AI ++ ++
Sbjct: 645 AEGHAFSPDTEWQRELEASFPYVETPDQLKAIIDVKRDMEQPQP 688
>gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH
391-98]
Length = 1176
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/180 (11%), Positives = 60/180 (33%), Gaps = 25/180 (13%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K+ + G+++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SRRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKDPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +++ ++A R + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAFT----PDTAEQREFESSFPYQETEDQLRSIEEIKKDMERSRP 644
>gi|237748656|ref|ZP_04579136.1| transcription-repair coupling factor [Oxalobacter formigenes
OXCC13]
gi|229380018|gb|EEO30109.1| transcription-repair coupling factor [Oxalobacter formigenes
OXCC13]
Length = 1152
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + K L VPV + I
Sbjct: 478 DLSELKIGDPVVHANHGIGRYRGLVTVDLGEGETEFLHLQYAK-DTKLYVPVSQLHVISR 536
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ A + L + K I + +L ++
Sbjct: 537 YAGTSAD--DAPLHTLGSGQ--------------WEKAKQKAAQQIHDTAAELLDLYARR 580
Query: 130 EKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + AI + +++S
Sbjct: 581 SMRKGFPFPLTKNDYEAFADSFGFEETPDQAAAIASVMEDMTSDKP 626
>gi|120554850|ref|YP_959201.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
gi|120324699|gb|ABM19014.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
Length = 1173
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 24/180 (13%)
Query: 3 FQQKRDAM--------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++++ R G +V+ HGVG ++ G EF + +
Sbjct: 479 RRRQKPTETDDAGYRDLSELRIGAPVVHIDHGVGRYKGLETLTAGGQSDEFLTLEYAG-G 537
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I ++ + + R K
Sbjct: 538 SKLYVPVSSLHLISRYAGTDEEHAP------------LHKLGTERWSNAKQKALEKIRDT 585
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ R +++ + + + A + + AI + +++S+
Sbjct: 586 AAELLDVYARREARKGFQFED---PKEAYRAFAAGFPFEETPDQQVAIESVFEDMTSERP 642
>gi|256389420|ref|YP_003110984.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
44928]
gi|256355646|gb|ACU69143.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
44928]
Length = 1182
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 63/174 (36%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + G+ +V+ HGVG E+ ++ VAG E+ V ++
Sbjct: 493 MPSRRRNVIDPLQLKAGDPVVHEQHGVGRYVEMAQRTVAGATREYLV---------IEYA 543
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ K V G+A + Q+ ++ ++V+
Sbjct: 544 AAKRGQPGDRLFVPTDQLDQVTKYVGGEAPSLHRLGGADWQKAKSRARKAVKQIAGDLVK 603
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + V + + I+ ++ ++
Sbjct: 604 LYSARMAAPGHAFAADTPWQR---ELEDAFPYVETPDQLACIDEVKSDMEKPVP 654
>gi|154685003|ref|YP_001420164.1| YdeB [Bacillus amyloliquefaciens FZB42]
gi|154350854|gb|ABS72933.1| YdeB [Bacillus amyloliquefaciens FZB42]
Length = 153
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 79/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G++IVYP HG GTI I+E++ K +++VI M + +P K + +R +
Sbjct: 1 MFQIGDNIVYPMHGAGTIEAIEEKQFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ + + + K W +R KI +G++ AEVVRDL R + +
Sbjct: 61 TDIRALKHIIHIFQHGESDKLLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ ++A ++ E+ + I+E + +
Sbjct: 121 SSEKKMLDNAYEFLISELEVIKGITEKQIKSF 152
>gi|297243627|ref|ZP_06927558.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
gi|296888378|gb|EFH27119.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
Length = 1202
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 16/182 (8%), Positives = 54/182 (29%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFD-----K 52
++++ + G+ +V+ HG+G +K++ + E+ VI +
Sbjct: 515 PKRRRKAIDLMELKPGDFVVHEQHGIGRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNA 574
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +E + + + AK
Sbjct: 575 PNDKLFIPTDQLDLVSKYIGAEIPKLNKL--------------GGSDWAQTKAKAKKHVH 620
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+++ ++S+ ++ + + + I+ ++ ++
Sbjct: 621 EIAENLIKLYSARQQSRGFAFSKDTPWQ---KELEDAFPYQETADQLTTIDEVKADMEKP 677
Query: 173 SS 174
Sbjct: 678 IP 679
>gi|153005645|ref|YP_001379970.1| CarD family transcriptional regulator [Anaeromyxobacter sp.
Fw109-5]
gi|152029218|gb|ABS26986.1| transcriptional regulator, CarD family [Anaeromyxobacter sp.
Fw109-5]
Length = 364
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 78/165 (47%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A R G +VYP GV + ++E+++AG KL+ + ++D + VP K IG
Sbjct: 24 ADAAELRPGNRVVYPNQGVCEVVGVEEKDIAGQKLQLVRMRREEDGAAVLVPRNKVPSIG 83
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R+++ +E + + W R ++ ++ +G ++ +AEVV+ LH
Sbjct: 84 LRRVATGEQIEGVFHFLAAQFEDPELDWKVRHRDNADRLIAGGVLGVAEVVKGLHSLSRI 143
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
ER+ Y++A + +V E+A + A + I+ L +
Sbjct: 144 RPLPAKEREQYDNARHLLVHEVAVSLGVPPALAEDYIDYALMPPA 188
>gi|158312659|ref|YP_001505167.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
gi|158108064|gb|ABW10261.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
Length = 1188
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 18/174 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G+ +V+ AHGVG E+ + VAG K E+ ++ + + L VP
Sbjct: 501 MPSRRRKGIDPLALSAGDLVVHDAHGVGRYVEMVTRTVAGAKREYLLLEYARGD-RLYVP 559
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I E R+ W +R ++ E++R
Sbjct: 560 TDQLEQISRYVGGEG----------PSLDRIGGADWGKR----KSRARKAVKEIAGELIR 605
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + AI+ ++ ++
Sbjct: 606 LYSARMAAPGHAFGPDSPWQR---ELEDAFPFRETPDQLAAIDEVKADMEKPVP 656
>gi|271969774|ref|YP_003343970.1| transcription-repair coupling factor [Streptosporangium roseum DSM
43021]
gi|270512949|gb|ACZ91227.1| transcription-repair coupling factor [Streptosporangium roseum DSM
43021]
Length = 1204
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 18/174 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ + G+H+V+ HGVG E+ ++ V G E+ VI + K L VP
Sbjct: 515 LPSKRRNMVDPLQLKVGDHVVHEQHGVGRYVEMVQRTVQGATREYLVIEYAKGD-RLYVP 573
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ ++ V G++ M + K E++R
Sbjct: 574 TDQLDEVTRY--------------VGGESPTLNRMGGADWAKAKTKAKKAVKEIAGELIR 619
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + EAI+ ++ ++
Sbjct: 620 LYSARMASPGHAFGPDTPWQREME---DAFPYAETGDQLEAIDEVKRDMERGIP 670
>gi|299782816|gb|ADJ40814.1| Transcription-repair coupling factor [Lactobacillus fermentum CECT
5716]
Length = 1113
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 59/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK EV G+ ++ V+ +D + VPV + +
Sbjct: 427 TDLKPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLD-YRDNAQIFVPVTQLNLVQKYV 485
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E K + + ++ + ++V + +++
Sbjct: 486 SAE------------SKTPRLNRLGGVEWAKTKRRVAAKIEDIADDLVDLYAKRETEKGF 533
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + E + + ++I I+ ++
Sbjct: 534 AFPKDDYLQ---EKFDDEFPYAETKDQLQSIQEIKADMERPRP 573
>gi|282852620|ref|ZP_06261962.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
gi|282556362|gb|EFB61982.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
Length = 935
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 490 ELKPGDYVVHVNHGIGRFEGIKTLDVDGKKRD-YITITYQHHDQLFVPADQLGLVQKYVA 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + S + ++ S +++ + +S+ +
Sbjct: 549 SE------------GKVPHINKLGSAEWAKTKKRVQSKVEDIADDLIELYAKRESEKGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 597 FSPDDDLQ---KEFEDAFPYPETPDQLRSIREIKADMESPKP 635
>gi|30264785|ref|NP_847162.1| CarD family transcriptional regulator [Bacillus anthracis str.
Ames]
gi|47778348|ref|YP_021614.2| CarD family transcriptional regulator [Bacillus anthracis str.
'Ames Ancestor']
gi|165869635|ref|ZP_02214293.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0488]
gi|167638161|ref|ZP_02396439.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0193]
gi|170705571|ref|ZP_02896035.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0389]
gi|254725089|ref|ZP_05186872.1| transcriptional regulator, CarD family protein [Bacillus anthracis
str. A1055]
gi|254736826|ref|ZP_05194532.1| transcriptional regulator, CarD family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254754539|ref|ZP_05206574.1| transcriptional regulator, CarD family protein [Bacillus anthracis
str. Vollum]
gi|254757371|ref|ZP_05209398.1| transcriptional regulator, CarD family protein [Bacillus anthracis
str. Australia 94]
gi|30259460|gb|AAP28648.1| transcriptional regulator, CarD family [Bacillus anthracis str.
Ames]
gi|47552053|gb|AAT34089.2| transcriptional regulator, CarD family [Bacillus anthracis str.
'Ames Ancestor']
gi|164714464|gb|EDR19983.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0488]
gi|167513978|gb|EDR89346.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0193]
gi|170129696|gb|EDS98559.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0389]
Length = 148
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 68/136 (50%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 1 MFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 61 VDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120
Query: 133 YSERQLYESALNRMVR 148
SE+Q+ ++A M R
Sbjct: 121 ASEKQMLDNARKMMFR 136
>gi|182420058|ref|ZP_02951292.1| transcription-repair coupling factor [Clostridium butyricum 5521]
gi|237669507|ref|ZP_04529487.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182376095|gb|EDT73682.1| transcription-repair coupling factor [Clostridium butyricum 5521]
gi|237654951|gb|EEP52511.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 1166
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ HG+G IK+ EVAG K ++ L VPV +
Sbjct: 495 KIKSFAELKPGDYVVHANHGIGVYKGIKQIEVAGHKRDYL-DIVYDKGDKLYVPVDQLDL 553
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I SE GK+ + S Q+ AK+ ++V+
Sbjct: 554 IQKYVGSE------------GKSPKVNKLGSAEWQKAKAKVRKSINEIAEDLVKLYAMRT 601
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +S+ ++ + E + + ++ I+ ++ S
Sbjct: 602 TVKGHKFSKDTQWQ---KQFEDEFPYDETPDQLTSLEEIKADMESDKP 646
>gi|197123346|ref|YP_002135297.1| CarD family transcriptional regulator [Anaeromyxobacter sp. K]
gi|196173195|gb|ACG74168.1| transcriptional regulator, CarD family [Anaeromyxobacter sp. K]
Length = 404
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 76/164 (46%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +VYP GV + + +++AG KLE + ++D + VP GK IG+
Sbjct: 26 AADELKPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTREEDGAAVMVPKGKVPSIGL 85
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
R+++ +E + W R ++ ++ +G ++ +AEVV+ LH
Sbjct: 86 RRVATGAQMEGVFHYLGAVYDDPELDWKVRHRDNADRLIAGGVLGVAEVVKGLHSLSRLR 145
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
ER+ Y++A + +V E++ + A + I+ L +
Sbjct: 146 PLPTKEREQYDNARHLLVHEVSVSLGVPPGLAEDYIDYALMPPA 189
>gi|167463169|ref|ZP_02328258.1| transcription-repair coupling factor [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 1150
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q + G+++V+ HG+G I E+ G+ ++ I + L VP+ + I
Sbjct: 486 QELKVGDYVVHVNHGIGKYVGIGTLEINGIHKDYLHILYAGGD-KLSVPIDQIDLIQKYV 544
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + K+ S ++++ S
Sbjct: 545 GSE------------EKEPKIYKLGGAEWARVKNKVRSSVKDIADDLIKLYAERQSTLGY 592
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ Y+ + + + AI I+ ++
Sbjct: 593 AFSKDSTYQ---HEFEAMFPYDETHDQLRAIEEIKKDMEKPLP 632
>gi|187923864|ref|YP_001895506.1| transcription-repair coupling factor [Burkholderia phytofirmans
PsJN]
gi|187715058|gb|ACD16282.1| transcription-repair coupling factor [Burkholderia phytofirmans
PsJN]
Length = 1160
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 463 RRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAG-D 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVAQLHVISRYSGADPESAP--LHSLGSGQ--------------WEKAKRKAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ E + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRALRQGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|111225581|ref|YP_716375.1| transcription-repair coupling factor [Frankia alni ACN14a]
gi|111153113|emb|CAJ64860.1| Transcription-repair coupling factor (TRCF) [Frankia alni ACN14a]
Length = 1246
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 64/174 (36%), Gaps = 18/174 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G+ +V+ AHGVG E+ + VAG K E+ ++ + + L VP
Sbjct: 558 MPSRRRKGIDPLALVPGDMVVHDAHGVGRYVEMVTRTVAGAKREYLLLEYARGD-RLYVP 616
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I +A R+ W++R ++ E++R
Sbjct: 617 TDQLEQITRYVGGDA----------PSLDRIGGADWAKR----KSRARKAVKEIAGELIR 662
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + + + AI+ ++ ++
Sbjct: 663 LYSARMAAPGHAFAPDNPWQR---ELEDAFPFRETPDQLAAIDEVKADMEKPVP 713
>gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
Loch Maree]
gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
Loch Maree]
Length = 1168
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G IK+ E+ G K ++ L VPV + +
Sbjct: 499 TELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYL-ELIYHSDDKLYVPVEQLDMVQRYI 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + S + K+ ++V+ +
Sbjct: 558 GSE------------GKKPKVNKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS+ +++ + E + + AI I+ ++ S
Sbjct: 606 KYSDDTVWQ---KQFEEEFPYEETPDQLLAIEDIKRDMESPKP 645
>gi|152980432|ref|YP_001353098.1| transcription-repair coupling factor [Janthinobacterium sp.
Marseille]
gi|151280509|gb|ABR88919.1| transcription-repair coupling factor (superfamily II helicase)
[Janthinobacterium sp. Marseille]
Length = 1147
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 25/180 (13%)
Query: 4 QQKRD---------AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+K++ + G+ +V+ HG+G + ++ + EF + + K
Sbjct: 462 SKKQEGATQVESMVRDLSELKIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAK-D 520
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I + + + RRA E +
Sbjct: 521 TKLYVPVSQLHVISRYSGASPEDAP-----LHALGSGQWEKAKRRAAE--------KIRD 567
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E E + + AIN + +++S
Sbjct: 568 TAAELLNLYARRALREGHSFE--YSAHDYEAFAESFGFEETADQAAAINAVIKDMTSGKP 625
>gi|326803014|ref|YP_004320832.1| transcription-repair coupling factor [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650035|gb|AEA00218.1| transcription-repair coupling factor [Aerococcus urinae
ACS-120-V-Col10a]
Length = 1183
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 24/182 (13%), Positives = 65/182 (35%), Gaps = 26/182 (14%)
Query: 3 FQQKRDAMR----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
+++++ Q + G+++V+ HG+G ++ EVAG ++
Sbjct: 481 RRRRKNTNNLSNAERLKSYQELKPGDYVVHVNHGIGQFVGVETIEVAGNHKDYL-SIVYA 539
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
D + VP+ + + +E GK+ M Q+ +++
Sbjct: 540 DNASIHVPIDQIDLVQKYVSAE------------GKSPKLNKMGGTEWQKTKQRVSKKIE 587
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V +++ ++S ++A E + + +I I+ ++ +
Sbjct: 588 DIADDLVDLYAERETRKGYAFSPDNEDQAA---FEDEFPYPETDDQLRSIKEIKADMEKE 644
Query: 173 SS 174
Sbjct: 645 KP 646
>gi|260663740|ref|ZP_05864628.1| transcription-repair coupling factor [Lactobacillus fermentum
28-3-CHN]
gi|260551791|gb|EEX24907.1| transcription-repair coupling factor [Lactobacillus fermentum
28-3-CHN]
Length = 1180
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 59/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK EV G+ ++ V+ +D + VPV + +
Sbjct: 494 TDLKPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLD-YRDNAQIFVPVTQLNLVQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E K + + ++ + ++V + +++
Sbjct: 553 SAE------------SKTPRLNRLGGVEWAKTKRRVAAKIEDIADDLVDLYAKRETEKGF 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + E + + ++I I+ ++
Sbjct: 601 AFPKDDYLQ---EKFDDEFPYAETKDQLQSIQEIKADMERPRP 640
>gi|227514331|ref|ZP_03944380.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
14931]
gi|227087303|gb|EEI22615.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
14931]
Length = 1180
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 59/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK EV G+ ++ V+ +D + VPV + +
Sbjct: 494 TDLKPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLD-YRDNAQIFVPVTQLNLVQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E K + + ++ + ++V + +++
Sbjct: 553 SAE------------SKTPRLNRLGGVEWAKTKRRVAAKIEDIADDLVDLYAKRETEKGF 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + E + + ++I I+ ++
Sbjct: 601 AFPKDDYLQ---EKFDDEFPYAETKDQLQSIQEIKADMERPRP 640
>gi|283783133|ref|YP_003373887.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
gi|283441749|gb|ADB14215.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
Length = 1202
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 16/182 (8%), Positives = 55/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFD-----K 52
++++ + G+ +V+ HG+G +K++ + E+ VI +
Sbjct: 515 PKRRRKAIDLMELKPGDFVVHEQHGIGRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNA 574
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +E + + + AK
Sbjct: 575 PNDKLFIPTDQLDLVSKYIGAEIPKLNKL--------------GGSDWAQTKAKAKKHVH 620
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+++ ++S+ ++ + + + I+ ++ ++ +
Sbjct: 621 EIAENLIKLYSARQQSRGFAFSKDTPWQ---KELEDAFPYQETADQLTTIDEVKADMENP 677
Query: 173 SS 174
Sbjct: 678 IP 679
>gi|88607738|ref|YP_504735.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ]
gi|88598801|gb|ABD44271.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ]
Length = 1139
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 19/171 (11%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++ G+ +V+ +GVG ++ V G +F V ++ L VPV
Sbjct: 453 ARRTVTNNASELTIGDVVVHKDYGVGIFIALRTLTVCGSCHDF-VEIKYRNDDKLFVPVE 511
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I ++ + L + A ++ K D+ + L
Sbjct: 512 DTDLITKYGINT----DVVLDRLGSSAWHD--------KQNKLKKRIDDI------AKTL 553
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + R L S +E V + + +AI +E +L+
Sbjct: 554 LHAEAMRKLADGSRFLPSSLYIDFCKECPYVETEDQLKAIADVENDLARGK 604
>gi|184154691|ref|YP_001843031.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
3956]
gi|183226035|dbj|BAG26551.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
3956]
Length = 1180
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 59/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK EV G+ ++ V+ +D + VPV + +
Sbjct: 494 TDLKPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLD-YRDNAQIFVPVTQLNLVQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E K + + ++ + ++V + +++
Sbjct: 553 SAE------------SKTPRLNRLGGVEWAKTKRRVAAKIEDIADDLVDLYAKRETEKGF 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + E + + ++I I+ ++
Sbjct: 601 AFPKDDYLQ---EKFDDEFPYAETKDQLQSIQEIKADMERPRP 640
>gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
Length = 1177
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQVGDYVVHINHGIGKYLGIETLEIGGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSDWKRVKKKVESSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I+ I+ ++ +
Sbjct: 605 AFSPDHEMQR---QFESAFPYQETDDQIRSIHEIKQDMERERP 644
>gi|39995128|ref|NP_951079.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
gi|39981890|gb|AAR33352.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
gi|298504158|gb|ADI82881.1| transcription-repair coupling factor [Geobacter sulfurreducens
KN400]
Length = 1157
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 55/172 (31%), Gaps = 17/172 (9%)
Query: 4 QQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K+ + G+H+V+ HGVG ++ ++G +F ++ + L +PV
Sbjct: 485 RKKQIMTSLAELKPGDHMVHLDHGVGIYRGLQHLSLSGCAGDFLLLEYAGGD-KLYLPVD 543
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + SE G + ++ K + E++R
Sbjct: 544 RLSLVQRYVGSE------------GIEPRVDRLGGTSWEKAKGKARAAVQEMAEELLRIY 591
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S A + + AI + +++S
Sbjct: 592 AARQLHEGHRFSPPDDL---YREFEASFAYEETSDQLAAIEDVIADMTSNRP 640
>gi|322381190|ref|ZP_08055193.1| transcription-repair coupling factor-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154766|gb|EFX47037.1| transcription-repair coupling factor-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 1173
Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q + G+++V+ HG+G I E+ G+ ++ I + L VP+ + I
Sbjct: 486 QELKVGDYVVHVNHGIGKYVGIGTLEINGIHKDYLHILYAGGD-KLSVPIDQIDLIQKYV 544
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + K+ S ++++ S
Sbjct: 545 GSE------------EKEPKIYKLGGAEWARVKNKVRSSVKDIADDLIKLYAERQSTLGY 592
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ Y+ + + + AI I+ ++
Sbjct: 593 AFSKDSTYQ---HEFEAMFPYDETHDQLRAIEEIKKDMEKPLP 632
>gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf]
gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4
str. 657]
gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf]
gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4
str. 657]
Length = 1168
Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G IK+ E+ G K ++ L VPV + +
Sbjct: 499 TELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYL-ELIYHSDDKLYVPVEQLDMVQRYI 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + S + K+ ++V+ +
Sbjct: 558 GSE------------GKKPKVNKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS+ +++ + E + + AI I+ ++ S
Sbjct: 606 KYSDDTVWQ---KQFEEEFPYEETPDQLLAIEDIKRDMESPKP 645
>gi|156741461|ref|YP_001431590.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
13941]
gi|156232789|gb|ABU57572.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
13941]
Length = 1246
Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 19/164 (11%), Positives = 56/164 (34%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+G + G+++V+ HG+ + + V G+ ++ + L VPV + +
Sbjct: 537 RGLKPGDYVVHIEHGIAVYEGLVRRSVGGVARDYL-NLRYAEGDRLYVPVDQIDRVSRYI 595
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + L + + + A+ ++ +L +Q +
Sbjct: 596 GAGDAEPQ--LTRLGTQD--------------WERAKRKARAAVQDLADELIGLYAQRQL 639
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ R + V + + +AI ++ ++
Sbjct: 640 AEGHAFSPDTEWQRELEASFPYVETPDQLKAIIDVKRDMEQPQP 683
>gi|254687524|ref|ZP_05151380.1| transcriptional regulator, CarD family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254741862|ref|ZP_05199549.1| transcriptional regulator, CarD family protein [Bacillus anthracis
str. Kruger B]
Length = 146
Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 66/134 (49%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 1 MFQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 61 VDKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALN 120
Query: 133 YSERQLYESALNRM 146
SE+Q+ ++A
Sbjct: 121 ASEKQMLDNARKMF 134
>gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str.
Langeland]
gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str.
Langeland]
gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str.
230613]
Length = 1168
Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G IK+ E+ G K ++ L VPV + +
Sbjct: 499 TELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYL-ELIYHSDDKLYVPVEQLDMVQRYI 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + S + K+ ++V+ +
Sbjct: 558 GSE------------GKKPKVSKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS+ +++ + E + + AI I+ ++ S
Sbjct: 606 KYSDDTVWQ---KQFEEEFPYEETPDQLLAIEDIKRDMESPKP 645
>gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC
2916]
gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
Kyoto]
gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC
2916]
gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
Kyoto]
Length = 1168
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G IK+ E+ G K ++ L VPV + +
Sbjct: 499 TELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYL-ELIYHSDDKLYVPVEQLDMVQRYI 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + S + K+ ++V+ +
Sbjct: 558 GSE------------GKKPKVSKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS+ +++ + E + + AI I+ ++ S
Sbjct: 606 KYSDDTVWQ---KQFEEEFPYEETPDQLLAIEDIKRDMESPKP 645
>gi|256844410|ref|ZP_05549896.1| transcription-repair coupling factor [Lactobacillus crispatus
125-2-CHN]
gi|256613488|gb|EEU18691.1| transcription-repair coupling factor [Lactobacillus crispatus
125-2-CHN]
Length = 1164
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGTKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + ++ I+ ++ S
Sbjct: 596 AFSPDDDLQ---KQFEDAFPYPETPDQLRSVKEIKQDMESSKP 635
>gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
Length = 1177
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQVGDYVVHINHGIGKYLGIETLEIGGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSDWKRVKKKVESSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + ++ + + +I+ I+ ++ +
Sbjct: 605 AFSPDHEMQ---HQFESAFPYQETDDQIRSIHEIKQDMERERP 644
>gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
Length = 1177
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQVGDYVVHVNHGIGKYLGIETLEINGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ + ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +IN I+ ++ +
Sbjct: 605 AFSPDHEMQR---EFESAFPYQETEDQLRSINEIKKDMERERP 644
>gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
Okra]
gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
Okra]
Length = 1168
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G IK+ E+ G K ++ L VPV + +
Sbjct: 499 TELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYL-ELIYHSDDKLYVPVEQLDMVQRYI 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + S + K+ ++V+ +
Sbjct: 558 GSE------------GKKPKVSKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS+ +++ + E + + AI I+ ++ S
Sbjct: 606 KYSDDTVWQ---KQFEEEFPYEETPDQLLAIEDIKRDMESPKP 645
>gi|239907582|ref|YP_002954323.1| hypothetical protein DMR_29460 [Desulfovibrio magneticus RS-1]
gi|239797448|dbj|BAH76437.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 170
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 4/170 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F + +VYPA GVG + I+ Q + G +FF++ + + L VPV A ++G+R L
Sbjct: 1 MFSEEQLVVYPAQGVGRVERIETQVIGGASADFFIVRILSNNVTLMVPVKNAANVGLRPL 60
Query: 73 SEAHFVERALKLVRGKAR---VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
A ++ ++ ++ W+RR +EY K+ SGDL +A V+++L
Sbjct: 61 CTAEQGAAIIESLKDRSDFTGYTGQNWNRRYREYSEKLKSGDLADVAYVLKELLLIGQNK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK-SSKTEK 178
E S+ ER+L E A + + E+A + E ++I + K E+
Sbjct: 121 ELSFGERRLLEQATSLLTLELALALDKDQQEIKDVINEIFADVLQPKPEE 170
>gi|227876324|ref|ZP_03994437.1| possible transcription-repair coupling factor [Mobiluncus mulieris
ATCC 35243]
gi|306817215|ref|ZP_07450962.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC
35239]
gi|227843097|gb|EEJ53293.1| possible transcription-repair coupling factor [Mobiluncus mulieris
ATCC 35243]
gi|304650017|gb|EFM47295.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC
35239]
Length = 1172
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 57/174 (32%), Gaps = 8/174 (4%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ ++++ GE++V+ HG+G +++++ + A ++ + L+
Sbjct: 481 LPTRRRKTIDPLSLSPGEYVVHAQHGIGRFVKLEKRTIGKGN-----KATSREYVVLEYA 535
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ ++ K V G+ M + K E+VR
Sbjct: 536 PSQRQGSKDLLWVPTDSLDMLSKYVGGETPTLSKMGGTDWNKAKQKARKAVKDIARELVR 595
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S ++S ++ + V + + I+ ++ ++
Sbjct: 596 LYAVRQSSKGHAFSPDTPWQR---ELEDSFEYVETPDQLTTIDEVKADMEKPVP 646
>gi|307701502|ref|ZP_07638520.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16]
gi|307613294|gb|EFN92545.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16]
Length = 1172
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 57/174 (32%), Gaps = 8/174 (4%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ ++++ GE++V+ HG+G +++++ + A ++ + L+
Sbjct: 481 LPTRRRKTIDPLSLSPGEYVVHAQHGIGRFVKLEKRTIGKGN-----KATSREYVVLEYA 535
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ ++ K V G+ M + K E+VR
Sbjct: 536 PSQRQGSKDLLWVPTDSLDMLSKYVGGETPTLSKMGGTDWNKAKQKARKAVKDIARELVR 595
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S ++S ++ + V + + I+ ++ ++
Sbjct: 596 LYAVRQSSKGHAFSPDTPWQR---ELEDSFEYVETPDQLTTIDEVKADMEKPVP 646
>gi|269976100|ref|ZP_06183099.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1]
gi|269935693|gb|EEZ92228.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1]
Length = 1172
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 57/174 (32%), Gaps = 8/174 (4%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ ++++ GE++V+ HG+G +++++ + A ++ + L+
Sbjct: 481 LPTRRRKTIDPLSLSPGEYVVHAQHGIGRFVKLEKRTIGKGN-----KATSREYVVLEYA 535
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ ++ K V G+ M + K E+VR
Sbjct: 536 PSQRQGSKDLLWVPTDSLDMLSKYVGGETPTLSKMGGTDWNKAKQKARKAVKDIARELVR 595
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S ++S ++ + V + + I+ ++ ++
Sbjct: 596 LYAVRQSSKGHAFSPDTPWQR---ELEDSFEYVETPDQLTTIDEVKADMEKPVP 646
>gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 3502]
gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 19397]
gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str.
Hall]
gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 3502]
gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 19397]
gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str.
Hall]
Length = 1168
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G IK+ E+ G K ++ L VPV + +
Sbjct: 499 TELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYL-ELIYHSDDKLYVPVEQLDMVQRYI 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + S + K+ ++V+ +
Sbjct: 558 GSE------------GKKPKVSKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS+ +++ + E + + AI I+ ++ S
Sbjct: 606 KYSDDTVWQ---KQFEEEFPYEETPDQLLAIEDIKRDMESPKP 645
>gi|134095113|ref|YP_001100188.1| transcription-repair ATP-dependent coupling factor [Herminiimonas
arsenicoxydans]
gi|133739016|emb|CAL62064.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
Mfd) [Herminiimonas arsenicoxydans]
Length = 1148
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 25/180 (13%)
Query: 4 QQKRD---------AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+K++ + G+ +V+ HG+G + ++ + EF + + K
Sbjct: 463 SKKQEGATQVEAMVRDLSELKIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAK-D 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I + + + RRA E +
Sbjct: 522 TKLYVPVSQLHVISRYSGASPEDAP-----LHALGSGQWEKAKRRAAE--------KIRD 568
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E E ++ + AIN + +++S
Sbjct: 569 TAAELLNLYARRALREGHSFE--YSAHDYAAFADSFGFEETVDQAAAINAVIQDMTSGKP 626
>gi|257068518|ref|YP_003154773.1| transcription-repair coupling factor Mfd [Brachybacterium faecium
DSM 4810]
gi|256559336|gb|ACU85183.1| transcription-repair coupling factor Mfd [Brachybacterium faecium
DSM 4810]
Length = 1211
Score = 104 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 16/178 (8%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGM----KLEFFVIAFDKDKMC 56
M +++ R G+H+V+ HGVG E+ + V E+ V
Sbjct: 499 MPSRRRNVVDPLQLRPGDHVVHAHHGVGRFVEMTRRAVGSGAKRTTREYLV--------- 549
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
++ K G R + +++ K V G+ M + +K
Sbjct: 550 IEYAPSKKGQPGDRLYVPSDQLDQVTKYVGGEEPSVNRMGGADWAKTKSKARKAIREIAD 609
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+VR S P ++ ++ + V + + I+ ++ ++
Sbjct: 610 ELVRLYSARQSAPGHAFGPDTPWQR---ELEDSFEFVETPDQLVTIDDVKADMEKSVP 664
>gi|317055208|ref|YP_004103675.1| CarD family transcriptional regulator [Ruminococcus albus 7]
gi|315447477|gb|ADU21041.1| transcriptional regulator, CarD family [Ruminococcus albus 7]
Length = 165
Score = 104 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 65/165 (39%), Gaps = 7/165 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR-- 70
++TG+ ++Y G+ + ++++++ G + E++++ + R
Sbjct: 1 MYKTGDVVMYGTSGICRVAAVEKRDLTGEEQEYYILRNIYSDKNIYYVPVNNEAALGRMH 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT----- 125
+ V+ + + + + ++R +EY I D I +++ L+
Sbjct: 61 PVCTKSEVDELISHMNSEGLIWIDNDNKRKEEYSRIIKDADKHEIIRLIKTLYLRRRELS 120
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
++ S+ A + + E A I E ++ IE +L+
Sbjct: 121 ENGRRLRSSDENYLGIAEDMLFEEFAYALGIDRCEVVDYIEKHLA 165
>gi|295692138|ref|YP_003600748.1| transcription-repair coupling factor [Lactobacillus crispatus ST1]
gi|295030244|emb|CBL49723.1| Transcription-repair coupling factor [Lactobacillus crispatus ST1]
Length = 1164
Score = 104 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGTKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + ++ I+ ++ S
Sbjct: 596 AFSPDDDLQ---KQFEDAFPYPETPDQLRSVKEIKQDMESSKP 635
>gi|293380357|ref|ZP_06626428.1| transcription-repair coupling factor [Lactobacillus crispatus
214-1]
gi|290923040|gb|EFD99971.1| transcription-repair coupling factor [Lactobacillus crispatus
214-1]
Length = 1164
Score = 104 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGTKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + ++ I+ ++ S
Sbjct: 596 AFSPDDDLQ---KQFEDAFPYPETPDQLRSVKEIKQDMESSKP 635
>gi|262047218|ref|ZP_06020176.1| transcription-repair coupling factor [Lactobacillus crispatus
MV-3A-US]
gi|312978409|ref|ZP_07790151.1| transcription-repair coupling factor [Lactobacillus crispatus
CTV-05]
gi|260572463|gb|EEX29025.1| transcription-repair coupling factor [Lactobacillus crispatus
MV-3A-US]
gi|310894752|gb|EFQ43824.1| transcription-repair coupling factor [Lactobacillus crispatus
CTV-05]
Length = 1164
Score = 104 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGTKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + ++ I+ ++ S
Sbjct: 596 AFSPDDDLQ---KQFEDAFPYPETPDQLRSVKEIKQDMESSKP 635
>gi|288917959|ref|ZP_06412318.1| transcription-repair coupling factor [Frankia sp. EUN1f]
gi|288350614|gb|EFC84832.1| transcription-repair coupling factor [Frankia sp. EUN1f]
Length = 1189
Score = 104 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 61/174 (35%), Gaps = 18/174 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G+ +V+ AHGVG E+ + VAG K E+ ++ + + L VP
Sbjct: 502 MPSRRRKGIDPLALTAGDLVVHDAHGVGRYVEMVTRTVAGAKREYLLLEYARGD-RLYVP 560
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ + E R+ W++R + E++R
Sbjct: 561 TDQLEQVSRYVGGEG----------PSLDRIGGADWAKR----KTRARKAVKEIAGELIR 606
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + AI+ ++ ++
Sbjct: 607 LYSARMAAPGHAFGPDTPWQR---ELEDAFPFRETPDQLSAIDEVKADMEKPVP 657
>gi|227878367|ref|ZP_03996322.1| transcriptional repair coupling factor [Lactobacillus crispatus
JV-V01]
gi|256849202|ref|ZP_05554635.1| transcriptional repair coupling factor [Lactobacillus crispatus
MV-1A-US]
gi|227862046|gb|EEJ69610.1| transcriptional repair coupling factor [Lactobacillus crispatus
JV-V01]
gi|256713978|gb|EEU28966.1| transcriptional repair coupling factor [Lactobacillus crispatus
MV-1A-US]
Length = 1164
Score = 104 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGTKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + ++ I+ ++ S
Sbjct: 596 AFSPDDDLQ---KQFEDAFPYPETPDQLRSVKEIKQDMESSKP 635
>gi|49187604|ref|YP_030857.1| CarD family transcriptional regulator [Bacillus anthracis str.
Sterne]
gi|65322084|ref|ZP_00395043.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD
[Bacillus anthracis str. A2012]
gi|177651210|ref|ZP_02934041.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0174]
gi|190568329|ref|ZP_03021237.1| transcriptional regulator, CarD family [Bacillus anthracis
Tsiankovskii-I]
gi|227817506|ref|YP_002817515.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC
684]
gi|49181531|gb|AAT56907.1| transcriptional regulator, CarD family [Bacillus anthracis str.
Sterne]
gi|172083036|gb|EDT68098.1| transcriptional regulator, CarD family [Bacillus anthracis str.
A0174]
gi|190560585|gb|EDV14562.1| transcriptional regulator, CarD family [Bacillus anthracis
Tsiankovskii-I]
gi|227003355|gb|ACP13098.1| transcriptional regulator, CarD family [Bacillus anthracis str. CDC
684]
Length = 153
Score = 104 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 68/135 (50%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ IVYP +G G I I+E+E+ G ++ VI M + +P+ + G+R +
Sbjct: 7 FQIGDKIVYPMNGAGVIEAIEEKEILGTIRQYCVIRIISKDMQVMLPMDQLQKSGIRYIV 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ L + W +R K+ +G+L AEVVRDL R + + +
Sbjct: 67 DKGTLDDILLEFQNGESDTSLSWKQRYTMNMEKMKNGNLQDSAEVVRDLLRRNKERALNA 126
Query: 134 SERQLYESALNRMVR 148
SE+Q+ ++A M R
Sbjct: 127 SEKQMLDNARKMMFR 141
>gi|325955975|ref|YP_004286585.1| transcription-repair coupling factor [Lactobacillus acidophilus
30SC]
gi|325332540|gb|ADZ06448.1| transcription-repair coupling factor [Lactobacillus acidophilus
30SC]
Length = 1164
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGVKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 596 AFSPDDDLQR---QFDDAFPYPETPDQLRSIKEIKEDMEKPKP 635
>gi|315037511|ref|YP_004031079.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
1112]
gi|312275644|gb|ADQ58284.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
1112]
Length = 1164
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGVKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 596 AFSPDDDLQR---QFDDAFPYPETPDQLRSIKEIKEDMEKPKP 635
>gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT]
gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT]
Length = 1170
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ HG+G IK+ EV G K ++ L VPV +
Sbjct: 494 KIKSFDELKPGDYVVHTNHGIGVYKGIKQLEVQGHKKDYL-ELSYNAGDTLYVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GK+ + + K+ E+V+
Sbjct: 553 VQKYIGSE------------GKSPKVNKLGGSEWTKAKKKVRKAINEIAEELVKLYAIRS 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +++ + E + + AI I+ ++ S +
Sbjct: 601 TLKGHKFGKDTVWQ---KQFEDEFPYDETPDQLTAIQEIKEDMESSKA 645
>gi|229131061|ref|ZP_04259974.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
gi|229165042|ref|ZP_04292838.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
gi|228618427|gb|EEK75456.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
gi|228652398|gb|EEL08322.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
Length = 1176
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+H+V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDHVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKEPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESLFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|284048953|ref|YP_003399292.1| transcription-repair coupling factor [Acidaminococcus fermentans
DSM 20731]
gi|283953174|gb|ADB47977.1| transcription-repair coupling factor [Acidaminococcus fermentans
DSM 20731]
Length = 1092
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 60/177 (33%), Gaps = 19/177 (10%)
Query: 1 MTFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+T + + F + G+++V+ G+G ++ EV G+ ++ + + L
Sbjct: 412 LTKTKGKGPALNYFSDIKAGDYVVHDVQGIGRYMGVETIEVNGVHRDYLQLQYAGGD-KL 470
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + + +E G M + Q+ K I E
Sbjct: 471 HVPVEQVGLLHKYVGNE------------GTPPKLSNMGRKDWQKATRKAQKAITILATE 518
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + P +++ ++ + + +AI I+ ++
Sbjct: 519 LLRLYAQRKITPGHAFAPDTHWQ---KEFEDSFPFEETPDQLKAIAEIKADMEKPVP 572
>gi|327182807|gb|AEA31254.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
1118]
Length = 1164
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGVKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 596 AFSPDDDLQR---QFDDAFPYPETPDQLRSIKEIKEDMEKPKP 635
>gi|163938061|ref|YP_001642945.1| transcription-repair coupling factor [Bacillus weihenstephanensis
KBAB4]
gi|163860258|gb|ABY41317.1| transcription-repair coupling factor [Bacillus weihenstephanensis
KBAB4]
Length = 1176
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+H+V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDHVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKEPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESLFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|284033574|ref|YP_003383505.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
gi|283812867|gb|ADB34706.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
Length = 1212
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++K+ G+ +V+ HGVG E+ ++ V ++ + ++
Sbjct: 517 MPSRRKKTIDPLELGPGDFVVHEQHGVGRYVEMMQRTVG-----TGQQKATREYVVIEFA 571
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ M + + E+++
Sbjct: 572 PSKRGQPGDRLYVPTDQLDQVTRYVGGEQPTLDKMGGGDWAKRKGRARKAVRQIAGELIK 631
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++++ +++ + V + + I+ ++ ++ +
Sbjct: 632 LYAARQATKGHAFAKDTPWQA---ELEDAFPFVETPDQLATIDDVKRDMERVTP 682
>gi|227894501|ref|ZP_04012306.1| transcriptional repair coupling factor [Lactobacillus ultunensis
DSM 16047]
gi|227863660|gb|EEJ71081.1| transcriptional repair coupling factor [Lactobacillus ultunensis
DSM 16047]
Length = 1164
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHVNHGIGRFEGIKTLENNGVKRD-YITITYQHGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 ASE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 596 AFSPDDDLQ---KQFDDAFPYPETPDQLRSIKEIKEDMEKPKP 635
>gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 1177
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQIGDYVVHINHGIGKYLGIETLEINGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ + ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++ +
Sbjct: 605 AFSPDHEMQR---EFESAFPYQETEDQLRSIHEIKKDMERERP 644
>gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp.
natto BEST195]
Length = 1177
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQIGDYVVHINHGIGKYLGIETLEINGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ + ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++ +
Sbjct: 605 AFSPDHEMQR---EFESAFPYQETEDQLRSIHEIKKDMERERP 644
>gi|124266762|ref|YP_001020766.1| transcription-repair coupling factor [Methylibium petroleiphilum
PM1]
gi|124259537|gb|ABM94531.1| transcription-repair coupling factor [Methylibium petroleiphilum
PM1]
Length = 1184
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 27/182 (14%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
++K++ + G+ +V+ HG+G + ++ EF + +
Sbjct: 491 RRRKQEQTSDVDALIKDLSELKVGDPVVHANHGIGRYVGLVNIDLGDGPSEFLHLEYAD- 549
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
K L VPV + I A E L + K
Sbjct: 550 KATLYVPVAQLQLISRYTGVSAE--EAPLHRLGSGQ--------------WEKAKRKAAE 593
Query: 114 AIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + +L ++ + + + AI+ + +L S
Sbjct: 594 QVRDTAAELLNLYARRAAREGHAFRFSPQDYEAFAASFGFEETADQRAAIHAVIQDLVSP 653
Query: 173 SS 174
Sbjct: 654 KP 655
>gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. SMY]
gi|585481|sp|P37474|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis]
gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. 168]
Length = 1177
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQIGDYVVHINHGIGKYLGIETLEINGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ + ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++ +
Sbjct: 605 AFSPDHEMQR---EFESAFPYQETEDQLRSIHEIKKDMERERP 644
>gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
Length = 1177
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQIGDYVVHINHGIGKYLGIETLEINGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ + ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++ +
Sbjct: 605 AFSPDHEMQR---EFESAFPYQETEDQLRSIHEIKKDMERERP 644
>gi|238853544|ref|ZP_04643916.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
gi|238833840|gb|EEQ26105.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
Length = 1165
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 490 ELKPGDYVVHVNHGIGRFEGIKTLDVDGKKRD-YITITYQHHDQLFVPADQLGLVQKYVA 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + S + ++ S +++ + +S+ +
Sbjct: 549 SE------------GKVPHINKLGSAEWAKTKKRVQSKVEDIADDLIELYAKRESEKGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 597 FSPDDDLQ---KEFEDAFPYPETPDQLRSIREIKADMESPKP 635
>gi|116628945|ref|YP_814117.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
33323]
gi|116094527|gb|ABJ59679.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
33323]
Length = 1165
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 490 ELKPGDYVVHVNHGIGRFEGIKTLDVDGKKRD-YITITYQHHDQLFVPADQLGLVQKYVA 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + S + ++ S +++ + +S+ +
Sbjct: 549 SE------------GKVPHINKLGSAEWAKTKKRVQSKVEDIADDLIELYAKRESEKGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 597 FSPDDDLQ---KEFEDAFPYPETPDQLRSIREIKADMESPKP 635
>gi|325838706|ref|ZP_08166621.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
gi|325490756|gb|EGC93063.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
Length = 1176
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 67/185 (36%), Gaps = 28/185 (15%)
Query: 2 TFQQKRDAMRQGF------------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
T ++K+ + F + G+++V+ HG+G I+ E G + +F +
Sbjct: 471 TKRKKQPTYKSSFKEGKKIKDFNELKIGDYVVHVQHGIGQYIGIETLESNGARKDFL-MI 529
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
+ L VP+ K + SE G + + ++ AK+
Sbjct: 530 AYRGDDKLYVPIDKIQMVQKYVGSE------------GAKPKINKLGTSEWEKTKAKVKK 577
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
++++ + + P ++S+ + + A V + + +A+ I+ ++
Sbjct: 578 TVKDIADKLIKIYAQREHLPGYAFSKDTIEQHA---FENAFPYVETEDQLKAVAEIKEDM 634
Query: 170 SSKSS 174
Sbjct: 635 EQPHP 639
>gi|229053900|ref|ZP_04195335.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
gi|228721441|gb|EEL72961.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
Length = 1176
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+H+V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDHVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKEPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESLFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC
15579]
gi|187774407|gb|EDU38209.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC
15579]
Length = 1172
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G IK+ E+ G K ++ L VPV + +
Sbjct: 503 TELKPGDFVVHANHGIGVFKGIKQLELQGNKKDYL-ELIYHSDDKLYVPVEQLDMVQRYI 561
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + S + K+ ++V+ +
Sbjct: 562 GSE------------GKKPKVNKLGSSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGY 609
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS+ +++ + E + + AI I+ ++ S
Sbjct: 610 KYSDDTVWQ---KQFEEEFPYEETPDQVLAIEDIKRDMESPKP 649
>gi|311695148|gb|ADP98021.1| transcription-repair-coupling factor [marine bacterium HP15]
Length = 1177
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 24/180 (13%)
Query: 3 FQQKRDAM--------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++++ R G +V+ HGVG ++ V G EF ++ +
Sbjct: 483 RRREKPTETDDAGFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAG-G 541
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I ++ + + R K
Sbjct: 542 SKLYVPVSSLHLISRYAGNDTEHAP------------LHKLGTDRWSTAKQKALEKIRDT 589
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ R +++ S+ + + A + + AI + +++S+
Sbjct: 590 AAELLDVYARREARKGFSFED---PKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQP 646
>gi|229009563|ref|ZP_04166790.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
gi|228751707|gb|EEM01506.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
Length = 1176
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+H+V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVGDHVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKEPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESLFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|256374814|ref|YP_003098474.1| transcription-repair coupling factor [Actinosynnema mirum DSM
43827]
gi|255919117|gb|ACU34628.1| transcription-repair coupling factor [Actinosynnema mirum DSM
43827]
Length = 1187
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 64/174 (36%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ RTG+++V+ HG+G E+ ++ VAG E+ V L+
Sbjct: 484 MPSRRRNAVDPLALRTGDYVVHEQHGIGRYVEMVQRTVAGATREYLV---------LEYA 534
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R ++ + V G+ + + AK AE+V+
Sbjct: 535 SSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKAKKAVKQIAAELVQ 594
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S P +++ ++ + ++ + AI+ ++ ++
Sbjct: 595 LYAARQSAPGHAFAPDTPWQR---ELEDAFPFTETVDQMAAIDEVKADMERGVP 645
>gi|86742605|ref|YP_483005.1| transcription-repair coupling factor [Frankia sp. CcI3]
gi|86569467|gb|ABD13276.1| transcription-repair coupling factor [Frankia sp. CcI3]
Length = 1208
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 63/174 (36%), Gaps = 18/174 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G+ +V+ AHGVG E+ + VAG K E+ ++ + + L VP
Sbjct: 519 MPSRRRKGIDPLALLPGDMVVHDAHGVGRYVEMVTRTVAGAKREYLLLEYARGD-RLYVP 577
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I +A R+ W++R + E++R
Sbjct: 578 TDQLEQITRYVGGDA----------PSLDRIGGADWAKRKSRARRAVK----EIAGELIR 623
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + + + AI+ ++ ++
Sbjct: 624 LYSARMAAPGHAFAPDSPWQR---ELEDAFPFRETPDQLAAIDEVKADMEKPVP 674
>gi|260893903|ref|YP_003240000.1| transcription-repair coupling factor [Ammonifex degensii KC4]
gi|260866044|gb|ACX53150.1| transcription-repair coupling factor [Ammonifex degensii KC4]
Length = 1123
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 60/165 (36%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ F+ GE++V+P HG+G + + V G+ E+ +I + + L +P + +
Sbjct: 456 EEREFKPGEYVVHPEHGIGIYRGLVQLSVEGVTREYALIQYAGED-RLYLPADQLG-VLE 513
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
R + R +L G+ + A++ E++R ++
Sbjct: 514 RYVGGEGAKPRLSRLGGGE-----------WKRVRARVKQAATDVARELLRLYAMRETAK 562
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S ++ + + AI ++ ++
Sbjct: 563 GHAFSPDTPWQR---EFEAAFPYEETPDQLRAIADVKADMEKPRP 604
>gi|227903169|ref|ZP_04020974.1| transcriptional repair coupling factor [Lactobacillus acidophilus
ATCC 4796]
gi|227868974|gb|EEJ76395.1| transcriptional repair coupling factor [Lactobacillus acidophilus
ATCC 4796]
Length = 1165
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHINHGIGRFEGIKTLENNGVKRD-YITITYQRGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 596 AFSPDDDLQR---KFDDAFPYPETADQLRSIKEIKEDMEKPKP 635
>gi|184201352|ref|YP_001855559.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
gi|183581582|dbj|BAG30053.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
Length = 1254
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 19/172 (11%), Positives = 57/172 (33%), Gaps = 3/172 (1%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+++ + G+++V+ HG+G E+ ++ +AG ++ + L+
Sbjct: 546 RRKRNQVDPLALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVLEYAAS 605
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
K R +++ V G+A M + E++R
Sbjct: 606 KRNGPRDRLFVPTDQLDQVSTYVGGEAPSLSKMGGADWNKTKRSAKKAVKEIANELIRLY 665
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S+ ++ + + + + + I+ ++ ++
Sbjct: 666 SARMASKGHSFGPDTPWQR---ELEQAFPYIETPDQLTTIDEVKADMERPIP 714
>gi|58336612|ref|YP_193197.1| transcriptional repair coupling factor [Lactobacillus acidophilus
NCFM]
gi|58253929|gb|AAV42166.1| transcriptional repair coupling factor [Lactobacillus acidophilus
NCFM]
Length = 1165
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK E G+K + ++ + L VP + +
Sbjct: 489 TELKPGDYVVHINHGIGRFEGIKTLENNGVKRD-YITITYQRGDQLFVPADQLSLVQKYV 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S +++ + +S+
Sbjct: 548 GSE------------GKTPHINKLGGSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 596 AFSPDDDLQR---KFDDAFPYPETADQLRSIKEIKEDMEKPKP 635
>gi|307729622|ref|YP_003906846.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003]
gi|307584157|gb|ADN57555.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003]
Length = 1161
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 463 RRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAG-D 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVAQLHVISRYSGADPESAP--LHSLGSGQ--------------WEKAKRKAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ E + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRAARSGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|323526062|ref|YP_004228215.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001]
gi|323383064|gb|ADX55155.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001]
Length = 1160
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 463 RRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAG-D 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVAQLHVISRYSGADPESAP--LHSLGSGQ--------------WEKAKRKAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ E + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRAARSGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|170692379|ref|ZP_02883542.1| transcription-repair coupling factor [Burkholderia graminis C4D1M]
gi|170142809|gb|EDT10974.1| transcription-repair coupling factor [Burkholderia graminis C4D1M]
Length = 1160
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 463 RRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAG-D 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVAQLHVISRYSGADPESAP--LHSLGSGQ--------------WEKAKRKAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ E + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRAARSGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola sp. JR]
gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR]
Length = 1178
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 59/167 (35%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+++V+ HG+G +++ EV G+ ++ +I + + L VP + +
Sbjct: 503 SHFTDLSVGDYVVHVNHGIGRYLGLQKLEVGGVTKDYLIIQYTGED-KLYVPTDQISLVQ 561
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+E + L + G+ K+ ++ E+ ++L +
Sbjct: 562 KYLGAEGAAPK--LSRLGGQD--------------WNKVKKRVKESVREMAQELLNLYAT 605
Query: 129 PEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
EK ++ + + + AI I+ ++
Sbjct: 606 REKVVGHAYPPDTVWQKEFEEAFPYEETPDQLRAIKEIKEDMERPKP 652
>gi|149182807|ref|ZP_01861269.1| transcription-repair coupling factor [Bacillus sp. SG-1]
gi|148849474|gb|EDL63662.1| transcription-repair coupling factor [Bacillus sp. SG-1]
Length = 1177
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+H+V+ HG+G I+ E+ G+ ++ I + L VPV + +
Sbjct: 498 SELKIGDHVVHVNHGIGKYLGIETLEINGVHKDYLHIK-YQGNDKLYVPVEQFDLVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + ++ K+ S ++++ ++
Sbjct: 557 ASE------------SKDPKLYKLGGTEWKKVKNKVESSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++ +
Sbjct: 605 AFSPDGDMQR---EFETSFPYQETEDQLRSIDEIKKDMERERP 644
>gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42]
gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42]
Length = 1177
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ + ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++ +
Sbjct: 605 AFSPDHEMQR---QFESAFPYQETEDQLRSIQEIKKDMERERP 644
>gi|293375931|ref|ZP_06622192.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
gi|292645453|gb|EFF63502.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
Length = 1176
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 67/185 (36%), Gaps = 28/185 (15%)
Query: 2 TFQQKRDAMRQGF------------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
T ++K+ + F + G+++V+ HG+G I+ E G + +F +
Sbjct: 471 TKRKKQPTYKSSFKEGKKIKDFNELKIGDYVVHVQHGIGQYIGIETLESNGARKDFL-MI 529
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
+ L VP+ K + SE G + + ++ AK+
Sbjct: 530 AYRGDDKLYVPIDKIQMVQKYVGSE------------GAKPKINKLGTSEWEKTKAKVKK 577
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
++++ + + P ++S+ + + A V + + +A+ I+ ++
Sbjct: 578 TVKDIADKLIKIYAQREHLPGYAFSKDTIEQHA---FENAFPYVETEDQLKAVTEIKEDM 634
Query: 170 SSKSS 174
Sbjct: 635 EQPHP 639
>gi|312796442|ref|YP_004029364.1| transcription-repair coupling factor [Burkholderia rhizoxinica HKI
454]
gi|312168217|emb|CBW75220.1| Transcription-repair coupling factor [Burkholderia rhizoxinica HKI
454]
Length = 1165
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 27/183 (14%)
Query: 2 TFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
+++++ + G+ +V+ HGVG + ++ EF + +
Sbjct: 470 ASRRRQEQASDVDSMVRDLSELKVGDPVVHSQHGVGRYMGLVTMDLGEGDTEFLHL-AYQ 528
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + I ++ L + K
Sbjct: 529 GDSKLYVPVSQLHVISRYGGADPDSAP--LHALGSGQ--------------WEKAKRRAA 572
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSS 171
I + +L ++ + R + + AI + +++S
Sbjct: 573 QQIRDTAAELLNLYARRAARQGHAFALDPRDYVRFAESFGFDETPDQAAAIAAVIGDMTS 632
Query: 172 KSS 174
Sbjct: 633 GKP 635
>gi|222056789|ref|YP_002539151.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
gi|221566078|gb|ACM22050.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
Length = 1169
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 60/173 (34%), Gaps = 17/173 (9%)
Query: 3 FQQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
++K+ + G+++V+ GVG ++ +GM+ +F ++ + L +PV
Sbjct: 496 ARRKQLLTSLAELKPGDYMVHIDFGVGIYRGLQHLTFSGMEGDFLLLEYAGAD-KLYLPV 554
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + +E G + ++ AK + E+++
Sbjct: 555 DRINLVQRYVGAE------------GVEPHVDKLGGAGWEKTKAKARAAIQEMAGELLKI 602
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S + A + + AI + +++ SK
Sbjct: 603 YAARQVEEGHAFS---PPDELYQEFEAAFAYEETPDQQAAIEDVLLDMESKKP 652
>gi|269794110|ref|YP_003313565.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
10542]
gi|269096295|gb|ACZ20731.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
10542]
Length = 1212
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 57/183 (31%), Gaps = 26/183 (14%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFD----- 51
M +++ R G+ +V+ HGVG E+ ++ + G E+ V+ +
Sbjct: 511 MPSKRRNVVDPLQLRAGDFVVHEQHGVGRFVELVQRTLGGGAAAATREYLVVEYASSRRG 570
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VP + + G++ M + +
Sbjct: 571 QPGDRLFVPTDQLDQVTKYTG--------------GESPALNKMGGSDWAKTKGRAKKAI 616
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+E++R + ++ ++ + A + + I+ ++ ++
Sbjct: 617 KEIASELIRLYSARMATKGHAFGPDTPWQR---ELEDAFAYTETPDQLATIDEVKQDMEK 673
Query: 172 KSS 174
Sbjct: 674 TIP 676
>gi|304319738|ref|YP_003853381.1| transcription-repair coupling factor [Parvularcula bermudensis
HTCC2503]
gi|303298641|gb|ADM08240.1| transcription-repair coupling factor [Parvularcula bermudensis
HTCC2503]
Length = 1163
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G+ IV+ HG+G ++ EV G + ++ + L +PV +
Sbjct: 489 TEASSLSVGDLIVHVDHGIGRYDGLETLEVGGAPHDCLIL-TYQKGDKLFLPVENIELLS 547
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G A W R + + I + +L ++
Sbjct: 548 R---FGSDDPSHPLDRLGGGA------WQSRKAKMRER--------IRLMAEELIAIAAK 590
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+E S A + + + AI+ + +LS
Sbjct: 591 RAARRAEELAPPSGAYDEFAARFPYTETDDQLNAIDDVISDLSRGRP 637
>gi|300362407|ref|ZP_07058583.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
gi|300353398|gb|EFJ69270.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
Length = 1171
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 490 ELKPGDYVVHVNHGIGRFEGIKTLDVDGKKRD-YITITYQHHDQLFVPADQLGLVQKYVA 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + S + ++ S +++ + +S+ +
Sbjct: 549 SE------------GKVPHINKLGSAEWAKTKKRVQSKVEDIADDLIELYAKRESEKGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 597 FSPDDDLQ---KEFEDAFPYPETPDQLRSIREIKADMESPKP 635
>gi|313621017|gb|EFR92140.1| transcription-repair coupling factor [Listeria innocua FSL S4-378]
Length = 899
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETDDQLRSISEIKKDMERPRP 645
>gi|315274585|ref|ZP_07869461.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
gi|313615787|gb|EFR89039.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
Length = 770
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEDAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|126737697|ref|ZP_01753427.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6]
gi|126721090|gb|EBA17794.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6]
Length = 1158
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + + L
Sbjct: 464 PKKRRKAENFLTETQSLSPGDLVVHVDHGIGRYRGLEVVTAAGAAHECILLEYA-EDSKL 522
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+
Sbjct: 523 YLPVENIELLSKY-----GHDEGLLDRLGGGA----------WQAKKAKLKERIREMADR 567
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI + +L S
Sbjct: 568 LIRIAAERALRKAPVM---DPPPHAWEEFSARFPYQETEDQLRAIEDVMEDLHSGQP 621
>gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani
DSM 16646]
gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani
DSM 16646]
Length = 1177
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 16/168 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
KR G+++V+ HG+G I+ EV G K ++F I + L VP +
Sbjct: 497 KRITSIDELSAGDYVVHITHGIGRYLGIETLEVEGHKKDYFAIQYAGGD-KLYVPTDQVE 555
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ E + + S + ++ E++
Sbjct: 556 MLHKYVGPE------------DRPPKLNKLGSSEWAKAKTRVKESVKEMAKELLELYAAR 603
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++S +++ + + + AI ++ ++ S
Sbjct: 604 QAMKGFAFSPDTVWQKEFEDL---FPYEETPDQLTAIEEVKRDMESDK 648
>gi|289642495|ref|ZP_06474639.1| transcription-repair coupling factor [Frankia symbiont of Datisca
glomerata]
gi|289507669|gb|EFD28624.1| transcription-repair coupling factor [Frankia symbiont of Datisca
glomerata]
Length = 1238
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 18/174 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ R G+ +V+ AHGVG E+ + VAG E+ V+ + K L VP
Sbjct: 547 MPHRRRKGIDPLALRAGDLVVHDAHGVGRYIEMVTRTVAGATREYLVLEYAKGD-RLYVP 605
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ + E R+ W++R + E++R
Sbjct: 606 TDQLEQVTRYVGGEG----------PSLDRIGGADWAKR----KGRARKAVKEIAGELIR 651
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + AI ++ ++
Sbjct: 652 LYSARMAAPGHAFGPDTPWQR---ELEDAFPFRETPDQLSAIEEVKADMRKPVP 702
>gi|227888873|ref|ZP_04006678.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
33200]
gi|227850566|gb|EEJ60652.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
33200]
Length = 1165
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 490 ELKPGDYVVHVNHGIGRFEGIKTLDVDGKKRD-YITITYQHHDQLFVPADQLGLVQKYVA 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE G+ + S + ++ S +++ + +S+ +
Sbjct: 549 SE------------GRVPHINKLGSSEWTKTKKRVQSKVEDIADDLIELYAKRESEKGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 597 FSPDDDLQ---KEFEDAFPYPETPDQLRSIREIKADMESPKP 635
>gi|297567462|ref|YP_003686434.1| CarD family transcriptional regulator [Meiothermus silvanus DSM
9946]
gi|296851911|gb|ADH64926.1| transcriptional regulator, CarD family [Meiothermus silvanus DSM
9946]
Length = 164
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 68/161 (42%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +R G+ +V P +GVG + I ++ ++G + ++ + F + VPV MR
Sbjct: 2 KEYRPGDKVVLPPYGVGVVASIMQRTISGNQRAYYQVEFPNTRSKAYVPVESPQSARMRP 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E L+L+R W+ R ++ + GD IA + L + +
Sbjct: 62 ALCREEIEEILELLRNGRLSLPRQWAARHRKTSEILAEGDPYRIATLAGQLRAWELERGL 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+RQ + A++ + E+ +S EA + E +
Sbjct: 122 PDLDRQAFRRAIHLLAEEVCQAMEVSLEEARAMFENAWGEE 162
>gi|269959135|ref|YP_003328924.1| transcription repair coupling factor [Anaplasma centrale str.
Israel]
gi|269848966|gb|ACZ49610.1| transcription repair coupling factor [Anaplasma centrale str.
Israel]
Length = 1122
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +V+ +GVG ++ V G +F V ++ VPV I +
Sbjct: 461 LAVGDVVVHKDYGVGIFNALRTLSVCGHLHDF-VEILYRNNDKFFVPVEDIDLITKYGTN 519
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ W R+ + +I ++ + L +++ +
Sbjct: 520 TDVVLDKLGST----------SWQERSAKLKKRIK--------DIAQTLLHSEAMRVLAE 561
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ L +E V + + +AI+ +E +L+S
Sbjct: 562 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 601
>gi|255003926|ref|ZP_05278727.1| transcription repair coupling factor (mfd) [Anaplasma marginale
str. Virginia]
Length = 1148
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +V+ +GVG ++ V G +F V ++ VPV I +
Sbjct: 487 LAVGDVVVHKDYGVGIFNALRTLSVCGHLHDF-VEILYRNNDKFFVPVEDIDLITKYGTN 545
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ W R+ + +I ++ + L +++ +
Sbjct: 546 TDVVLDKLGST----------SWQERSAKLKKRIK--------DIAQTLLHSEAMRVLAE 587
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ L +E V + + +AI+ +E +L+S
Sbjct: 588 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 627
>gi|255002792|ref|ZP_05277756.1| transcription repair coupling factor (mfd) [Anaplasma marginale
str. Puerto Rico]
Length = 1152
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +V+ +GVG ++ V G +F V ++ VPV I +
Sbjct: 491 LAVGDVVVHKDYGVGIFNALRTLSVCGHLHDF-VEILYRNNDKFFVPVEDIDLITKYGTN 549
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ W R+ + +I ++ + L +++ +
Sbjct: 550 TDVVLDKLGST----------SWQERSAKLKKRIK--------DIAQTLLHSEAMRVLAE 591
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ L +E V + + +AI+ +E +L+S
Sbjct: 592 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 631
>gi|254994680|ref|ZP_05276870.1| transcription repair coupling factor (mfd) [Anaplasma marginale
str. Mississippi]
Length = 1099
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +V+ +GVG ++ V G +F V ++ VPV I +
Sbjct: 438 LAVGDVVVHKDYGVGIFNALRTLSVCGHLHDF-VEILYRNNDKFFVPVEDIDLITKYGTN 496
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ W R+ + +I ++ + L +++ +
Sbjct: 497 TDVVLDKLGST----------SWQERSAKLKKRIK--------DIAQTLLHSEAMRVLAE 538
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ L +E V + + +AI+ +E +L+S
Sbjct: 539 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 578
>gi|222474820|ref|YP_002563235.1| transcription repair coupling factor (mfd) [Anaplasma marginale
str. Florida]
gi|222418956|gb|ACM48979.1| transcription repair coupling factor (mfd) [Anaplasma marginale
str. Florida]
Length = 1152
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +V+ +GVG ++ V G +F V ++ VPV I +
Sbjct: 491 LAVGDVVVHKDYGVGIFNALRTLSVCGHLHDF-VEILYRNNDKFFVPVEDIDLITKYGTN 549
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ W R+ + +I ++ + L +++ +
Sbjct: 550 TDVVLDKLGST----------SWQERSAKLKKRIK--------DIAQTLLHSEAMRVLAE 591
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ L +E V + + +AI+ +E +L+S
Sbjct: 592 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 631
>gi|229542275|ref|ZP_04431335.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
gi|229326695|gb|EEN92370.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
Length = 1179
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 21/178 (11%)
Query: 2 TFQQK-----RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
T +QK R G+++V+ HG+G I E+ G+ ++ I +
Sbjct: 481 TRRQKLSNAERIKNYSELNVGDYVVHVNHGIGKYLGIVTLEINGVHKDYLHIK-YQGSDK 539
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VPV + + SE GK + + K+ S
Sbjct: 540 LYVPVDQIDLVQKYVGSE------------GKEPKLYKLGGSEWKRVKRKVQSSIQDIAD 587
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++V+ ++ ++S + + + +I I+ ++ +
Sbjct: 588 DLVKLYAEREASKGFAFSPDGDMQR---EFEAAFPYKETEDQLRSIQEIKRDMEKEKP 642
>gi|56416451|ref|YP_153525.1| transcription repair coupling factor [Anaplasma marginale str. St.
Maries]
gi|56387683|gb|AAV86270.1| transcription repair coupling factor [Anaplasma marginale str. St.
Maries]
Length = 1152
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +V+ +GVG ++ V G +F V ++ VPV I +
Sbjct: 491 LAVGDVVVHKDYGVGIFNALRTLSVCGHLHDF-VEILYRNNDKFFVPVEDIDLITKYGTN 549
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ W R+ + +I ++ + L +++ +
Sbjct: 550 TDVVLDKLGST----------SWQERSAKLKKRIK--------DIAQTLLHSEAMRVLAE 591
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ L +E V + + +AI+ +E +L+S
Sbjct: 592 GNKFLANQRYLDFCKEFPYVETEDQLKAISEVEEDLASGK 631
>gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2]
gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2]
Length = 1177
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQIGDYVVHVNHGIGKYLGIETLEINGIHKDYL-NIHYQGSDKLYVPVDQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVESSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++ +
Sbjct: 605 AFSPDHEMQR---EFEAAFPYQETEDQLRSIHEIKRDMEKERP 644
>gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
14580]
gi|52783912|ref|YP_089741.1| hypothetical protein BLi00068 [Bacillus licheniformis ATCC 14580]
gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
14580]
gi|52346414|gb|AAU39048.1| Mfd [Bacillus licheniformis ATCC 14580]
Length = 1177
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQIGDYVVHVNHGIGKYLGIETLEINGIHKDYL-NIHYQGSDKLYVPVDQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVESSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++ +
Sbjct: 605 AFSPDHEMQR---EFEAAFPYQETEDQLRSIHEIKRDMEKERP 644
>gi|229494982|ref|ZP_04388731.1| transcription-repair coupling factor [Rhodococcus erythropolis
SK121]
gi|229318076|gb|EEN83948.1| transcription-repair coupling factor [Rhodococcus erythropolis
SK121]
Length = 1208
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 58/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ + G + E+ V ++
Sbjct: 507 LPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMVERTIGGARREYLV---------IEYA 557
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ + K E+V+
Sbjct: 558 PSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWANTKRKARKAVREIAGELVQ 617
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + A +I + I+ ++ ++
Sbjct: 618 LYAARQAAPGHAFGPDTPWQ---KELEDAFAFTETIDQLTVISEVKADMEKPVP 668
>gi|226307788|ref|YP_002767748.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
gi|226186905|dbj|BAH35009.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
Length = 1229
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 58/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ + G + E+ V ++
Sbjct: 528 LPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMVERTIGGARREYLV---------IEYA 578
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ + K E+V+
Sbjct: 579 PSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWANTKRKARKAVREIAGELVQ 638
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + A +I + I+ ++ ++
Sbjct: 639 LYAARQAAPGHAFGPDTPWQ---KELEDAFAFTETIDQLTVISEVKADMEKPVP 689
>gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes]
Length = 1190
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 510 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 568
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 569 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 616
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 617 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 656
>gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii
NCIMB 8052]
gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii
NCIMB 8052]
Length = 1166
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK+ +V G K ++ L VPV + I
Sbjct: 501 ELKPGDYVVHANHGIGVYKGIKQIDVGGHKRDYL-DIVYDKGDKLYVPVDQLDLIQKYIG 559
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK+ + S Q+ AK ++V+ +
Sbjct: 560 SE------------GKSPKVNKLGSAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHK 607
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ ++ + E + + ++ I++++ S
Sbjct: 608 FSKDTEWQ---KQFEDEFPFEETPDQLTSLEEIKIDMESDKP 646
>gi|313625455|gb|EFR95204.1| transcription-repair coupling factor [Listeria innocua FSL J1-023]
Length = 899
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETDDQLRSISEIKKDMERPRP 645
>gi|86159279|ref|YP_466064.1| CarD family transcriptional regulator [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775790|gb|ABC82627.1| transcriptional regulator, CarD family [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 399
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 77/163 (47%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ G+ +VYP GV + + +++AG KLE + ++D + VP GK IG+R
Sbjct: 27 ADELKPGDRVVYPNQGVCAVVGWEVKDIAGQKLELVRMTREEDGAAVMVPKGKVPSIGLR 86
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+++ +E + W R ++ ++ +G ++ +AEVV+ LH
Sbjct: 87 RVATGAQMEGVFHYLGAVYDDPELDWKIRHRDNADRLIAGGVLGVAEVVKGLHSLSRLRP 146
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
ER+ Y++A + +V E++ ++ A + I+ L +
Sbjct: 147 LPTKEREQYDNARHLLVHEVSVSLAVPPGLAEDYIDYALMPPA 189
>gi|299066652|emb|CBJ37845.1| transcription-repair ATP-dependent coupling factor, helicase
[Ralstonia solanacearum CMR15]
Length = 1143
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ + EF +
Sbjct: 459 RRKQEQATAVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLD-YDKG 517
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 518 SKLYVPVHQLHVISRYSGADPDTAP--LHQLGSGQ--------------WDKAKRKAAQQ 561
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + + AI + +++S
Sbjct: 562 IRDTAAELLNLYARRALRQGFAFPLAPNDYETFAESFGFDETPDQAAAITAVIADMTSGK 621
Query: 174 S 174
Sbjct: 622 P 622
>gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans
743B]
gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans
743B]
gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans
743B]
Length = 1173
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G+++V+ HG+G IK+ EV +K ++ + D L VPV + I
Sbjct: 500 SSFAELKPGDYVVHANHGIGVYKGIKQLEVENVKKDYL-MVSYSDGDTLYVPVEQLDLIQ 558
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
SE GKA + Q+ K + ++V+ ++
Sbjct: 559 KYIGSE------------GKAPKITKLGGSEWQKAKTKARNSINEIAQDLVKLYATREAV 606
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+S+ ++ + E + + AI I+V++
Sbjct: 607 KGYSFSKDTTWQ---QQFEAEFPYEETPDQISAIEEIKVDMEKNKP 649
>gi|332654772|ref|ZP_08420514.1| transcription-repair coupling factor [Ruminococcaceae bacterium
D16]
gi|332516115|gb|EGJ45723.1| transcription-repair coupling factor [Ruminococcaceae bacterium
D16]
Length = 1164
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 60/181 (33%), Gaps = 23/181 (12%)
Query: 2 TFQQKRDAMRQGFR------TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K RQ + G+ +V+ HGVG + + G++ ++ IA+ +
Sbjct: 479 PRQKKETTNRQKLKSYADLSPGDLVVHEHHGVGRYVGMVKMPADGIEKDYVKIAYAGSDV 538
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVE-RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VP + I E + L + G + + A
Sbjct: 539 -LYVPATQLDLISKYIGGGEDAQETKKLSKLGGTD--------------WERAKTRAKKA 583
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + L +Q ++ +S R + + + I I+ ++ S
Sbjct: 584 VQDLAKGLIELYAQRQRQPGYAFSPDSPWQREFEEQFEYTETDDQLRCIQEIKKDMESPV 643
Query: 174 S 174
Sbjct: 644 P 644
>gi|296448068|ref|ZP_06889971.1| transcription-repair coupling factor [Methylosinus trichosporium
OB3b]
gi|296254425|gb|EFH01549.1| transcription-repair coupling factor [Methylosinus trichosporium
OB3b]
Length = 1173
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/182 (13%), Positives = 52/182 (28%), Gaps = 26/182 (14%)
Query: 1 MTFQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
M ++++ G+ +V+ HG+G ++ AG + I +
Sbjct: 481 MVRRRRKTKHTENLLGEIAALSAGDLVVHVDHGIGRFIGLETITAAGAPHDCLEIHYAGG 540
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L +PV + + ++ W R +
Sbjct: 541 D-KLYLPVENIELLSRYGSEDTEAQL---------DKLGGVGWQTRKARMKNR------- 583
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I E+ + L +Q + + E + + + AI + +LSS
Sbjct: 584 -IREMAKGLIAIAAQRMLRQATKLAPPEGLYDEFCARFPYDETEDQAAAIEAVLDDLSSG 642
Query: 173 SS 174
Sbjct: 643 RP 644
>gi|329666673|gb|AEB92621.1| transcription-repair coupling factor [Lactobacillus johnsonii DPC
6026]
Length = 1165
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 490 ELKPGDYVVHVNHGIGRFEGIKTLDVDGKKRD-YITITYQHNDQLFVPADQLGLVQKYVA 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE G+ + S + ++ S +++ + +S+ +
Sbjct: 549 SE------------GRVPHINKLGSSEWTKTKKRVQSKVEDIADDLIELYAKRESEKGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 597 FSPDDDLQ---KEFEDAFPYPETPDQLRSIREIKADMESPKP 635
>gi|327439855|dbj|BAK16220.1| transcriptional regulator, similar to M. xanthus CarD [Solibacillus
silvestris StLB046]
Length = 153
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 79/152 (51%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE+I+YP HG G I ++E+E+ G K + ++I M + +P+ K + +R +
Sbjct: 1 MFQIGENIIYPMHGAGIIKAVEEKEILGEKQQCYIIKMSVGNMQITIPMDKILSSSIRPV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ ++ L + + + W +R + K+ +G ++ AEVVRDL R + +
Sbjct: 61 TDIIELKHILHIFQHGESDEVLPWRQRYKVNTDKVKTGKILECAEVVRDLMRMKEEKALN 120
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINL 164
SE+++ + ++ E+ + I+E + +
Sbjct: 121 TSEKEMLNNTHQFLISELGLIKGITENQIKSF 152
>gi|188584709|ref|YP_001916254.1| transcription-repair coupling factor [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349396|gb|ACB83666.1| transcription-repair coupling factor [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 1196
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + + + +++V+ HG+G IK EV G+ ++ I + + L VP + +
Sbjct: 506 KVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGNDS-LYVPTEQIDE 564
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I E GK ++ S Q+ ++ S ++++
Sbjct: 565 IQKYVGKE------------GKPPKLYSLGSSEWQKVKQRVKSSVKELAEDLLKLYAERS 612
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+ ++S+ ++ + + +AI+ I+ +L S+
Sbjct: 613 SRKGYAFSQDTPWQ---KEFEDYFPYELTPDQKKAISEIKEDLESEQP 657
>gi|304437107|ref|ZP_07397070.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304370058|gb|EFM23720.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 1097
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+R + G+++V+ +HG+G ++ EVAG+ ++ I L VP
Sbjct: 416 ASAGERIRHFREIAPGDYVVHISHGIGKYLGVETIEVAGVHRDYLHI-QYGGDDKLFVPT 474
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + +E G A M + AK ++
Sbjct: 475 DQVSLLQKYIGAE------------GAAPRLHRMGTADWARAQAKAQKSVEDIADHLIEL 522
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S ++ + + AI I+ ++ S+
Sbjct: 523 YAARHMSKGHAFSPD---DAGQREFEEAFPYQETDDQLRAIAEIKHDMESEKP 572
>gi|42518364|ref|NP_964294.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
533]
gi|41582649|gb|AAS08260.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
533]
Length = 1165
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 490 ELKPGDYVVHVNHGIGRFEGIKTLDVDGKKRD-YITITYQHHDQLFVPADQLGLVQKYVA 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE G+ + S + ++ S +++ + +S+ +
Sbjct: 549 SE------------GRVPHINKLGSSEWTKTKKRVQSKVEDIADDLIELYAKRESEKGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 597 FSPDDDLQ---KEFEDAFPYPETPDQLRSIREIKADMESPKP 635
>gi|331694753|ref|YP_004330992.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans
CB1190]
gi|326949442|gb|AEA23139.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans
CB1190]
Length = 1194
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 24/180 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
M +++ + G+ +V+ HG+G E++E+ V G E+ V+ + +
Sbjct: 494 MPARRRNAVDLAVLQPGDFVVHSQHGIGKFVEMRERTVQGATREYLVLEYASSKRGQPAD 553
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP +I E + + + G +K S A+
Sbjct: 554 RLFVPTDALDEISRYVGGEQPTLNK----LGGAD--------------WSKTKSRARKAV 595
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ L + + + S +S R + + + AI+ ++ ++
Sbjct: 596 RDIAAGLVQLYAARQASPGHAFASDSPWQRELEDAFPFTETPDQLAAIDEVKADMERPVP 655
>gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar
6b str. SLCC5334]
gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK + + K+ + ++++ +++
Sbjct: 558 GAE------------GKTPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|332671526|ref|YP_004454534.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
gi|332340564|gb|AEE47147.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
Length = 1222
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 16/178 (8%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKMC 56
M +++ R G+ +V+ HGVG E+ ++ + E+ VI + K
Sbjct: 520 MPSRRRNVVDPLQLRPGDFVVHEQHGVGRFVELVQRTIGTGANAATREYLVIEYASSK-- 577
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
G R + +++ K V G+A M + + A
Sbjct: 578 -------RGQPGDRLFVPSDQLDQVTKYVGGEAPTLNRMGGGDWAKTKGRARRAVKEIAA 630
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E++R + P ++ ++ + A V + + I+ ++ ++
Sbjct: 631 ELIRLYSARMATPGHAFGADTPWQR---ELEDAFAYVETPDQLATIDEVKADMEKSVP 685
>gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-175]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|209964568|ref|YP_002297483.1| transcription-repair coupling factor [Rhodospirillum centenum SW]
gi|209958034|gb|ACI98670.1| transcription-repair coupling factor [Rhodospirillum centenum SW]
Length = 1209
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 23/177 (12%)
Query: 3 FQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+++R A G G+ +V+ HG+G ++ +V G + + ++ L
Sbjct: 482 RKKRRAANFIAEASGLNPGDLVVHIDHGIGRYDGLETLDVGGAPHDCLRLVYEGGD-KLY 540
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VPV + R SE + R+ W R ++ ++
Sbjct: 541 VPVENIE-VLSRYGSEDSAGQ--------LDRLGGAGWQSRKARVKKRLK--------DM 583
Query: 119 VRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L R ++ + + + A + + + AI + +LSS
Sbjct: 584 AAALLRIAAERALRTAPPVAVPDGAWDEFCARFPYAETDDQLHAIEDVLGDLSSGRP 640
>gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
Length = 1183
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 20/179 (11%), Positives = 56/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + +++V+ HG+G I+ E+ G+ ++ +
Sbjct: 489 SQRKQKLSNAERIKSYSELKVDDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 547
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 548 KLYVPIEQIDQVQKYVGSE------------GKNPKVYKLGGNDWKKVKTKVEKSVQDIA 595
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 596 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 651
>gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes
serotype 4b str. F2365]
gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes
Clip81459]
gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-194]
gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-503]
gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes
HPB2262]
gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N1-017]
gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes
serotype 4b str. F2365]
gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-503]
gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes
HPB2262]
gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-194]
gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N1-017]
gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str.
Scott A]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes 1816]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N3-165]
gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N3-165]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
12442]
gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
12442]
Length = 1176
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 20/179 (11%), Positives = 56/179 (31%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + +++V+ HG+G I+ E+ G+ ++ +
Sbjct: 482 SQRKQKLSNAERIKSYSELKVDDYVVHVNHGIGKFLGIETLEINGVHKDYL-NIKYQGND 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + + SE GK + ++ K+
Sbjct: 541 KLYVPIEQIDQVQKYVGSE------------GKNPKVYKLGGNDWKKVKTKVEKSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ +Y+ + + + +I I+ ++
Sbjct: 589 DDLIKLYAEREASKGYAYTPDT---AEQQEFESSFPYQETEDQLRSIEEIKKDMERGRP 644
>gi|254832465|ref|ZP_05237120.1| transcription-repair coupling factor [Listeria monocytogenes
10403S]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str.
4b H7858]
gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes str.
4b H7858]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
gi|224503466|ref|ZP_03671773.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-561]
gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes
08-5578]
gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes
08-5923]
gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes
08-5578]
gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes
08-5923]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|17546361|ref|NP_519763.1| transcription-repair coupling factor protein [Ralstonia
solanacearum GMI1000]
gi|17428658|emb|CAD15344.1| probable transcription-repair coupling factor protein [Ralstonia
solanacearum GMI1000]
Length = 1157
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ + EF +
Sbjct: 473 RRKQEQATAVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLD-YDKG 531
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 532 SKLYVPVHQLHVISRYSGADPDTAP--LHQLGSGQ--------------WDKAKRKAAQQ 575
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + + AI + +++S
Sbjct: 576 IRDTAAELLNLYARRALRQGFAFPLAPNDYEAFAESFGFDETPDQAAAITAVIADMTSGK 635
Query: 174 S 174
Sbjct: 636 P 636
>gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str.
1/2a F6854]
gi|224500335|ref|ZP_03668684.1| transcription-repair coupling factor [Listeria monocytogenes
Finland 1988]
gi|254901001|ref|ZP_05260925.1| transcription-repair coupling factor [Listeria monocytogenes J0161]
gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str.
1/2a F6854]
gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|326692375|ref|ZP_08229380.1| transcription-repair coupling factor [Leuconostoc argentinum KCTC
3773]
Length = 1176
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 16/163 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G ++ V G K ++ + + +PV + I
Sbjct: 493 ELNVGDYVVHVNHGIGRYEGLQTMTVDGGKQDYL-TIAYQKNAKIFIPVTQLNLIQKYIG 551
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G AK I ++ DL +Q E
Sbjct: 552 ASDAAKAPKLNKLGGTE--------------WAKTKRQVAAKIEDIADDLLELYAQREAE 597
Query: 133 YSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++A + + + +I I+ ++
Sbjct: 598 AGYAFPPDDTAQLKFDTAFGYPETPDQIRSIEEIKADMQKPRP 640
>gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 1178
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHINHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 606 AFSPDEEMQR---EFEDAFPYQETDDQLRSIAEIKKDMERPRP 645
>gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99]
Length = 1179
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J2-071]
gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J2-071]
Length = 1179
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 645
>gi|294340382|emb|CAZ88763.1| Transcription-repair coupling factor (TRCF) (ATP-dependent helicase
mfd) [Thiomonas sp. 3As]
Length = 1160
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 52/182 (28%), Gaps = 27/182 (14%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
++K++ + G+ +V+ HG+G + E ++ EF + +
Sbjct: 466 RRRKQEQASNVDALIHDLAELQPGDPVVHANHGIGRYQGLAELDLGDGPAEFLHLVYAN- 524
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L VPV + IG + + L ++ K
Sbjct: 525 DAVLYVPVSQLHLIGRYSGAAQD--DAPLHILGSGQ--------------WDKARRKAAE 568
Query: 114 AIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + +L ++ + + + AI+ + ++ S
Sbjct: 569 QVRDAAAELLNIYARRAAHQGHAFRYSPQDYEAFAASFGFEETPDQAAAIHAVVQDMISP 628
Query: 173 SS 174
Sbjct: 629 KP 630
>gi|148554437|ref|YP_001262019.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
gi|148499627|gb|ABQ67881.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
Length = 1195
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 23/177 (12%)
Query: 3 FQQKRDA-----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K+ A G+ +V+ HG+G + VA + V L
Sbjct: 513 QKRKKSADAFLAELATLSPGDLVVHMDHGIGRYEGLTSIPVAKAPHDC-VALTYAGGDKL 571
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + R +E V+ ++ W R + I E
Sbjct: 572 YVPVENID-VLSRYGAENEGVQ--------LDKLGGVAWQARKARMKER--------IRE 614
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L +T ++ +E +S N V + + AI + +L++
Sbjct: 615 IAGELIKTAAERALRPAEAIEPDSGYNEFVDRFPYQETEDQDRAIADVIEDLAAGKP 671
>gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
Length = 1175
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I E+ G+ ++ I + L VPV + I
Sbjct: 486 TELKVGDYVVHQNHGIGKYVGIGTLEIGGIHKDYLHILYAGGD-KLSVPVEQVDMIQKYV 544
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + K+ + ++++ S P
Sbjct: 545 GSE------------EKEPKINKLGGSEWIRAKNKVRASVQDIADDLIKLYAERQSAPGF 592
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Y++ + + + AI I+ ++
Sbjct: 593 AFGQDTAYQNEFEAI---FPYDETRDQLRAIEEIKKDMQKPQP 632
>gi|312865767|ref|ZP_07725989.1| transcription-repair coupling factor [Streptococcus downei F0415]
gi|311098642|gb|EFQ56864.1| transcription-repair coupling factor [Streptococcus downei F0415]
Length = 1169
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G I+ E+ G+ ++ ++ + +PV + +
Sbjct: 490 ELQKGDYVVHNVHGIGRFLGIETIEIKGVHRDYL-TVQYQNGDTISIPVEQIELLSKYTA 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K++ ++++ +
Sbjct: 549 S------------DGKEPKINKLNDGRFQKAKQKVSKQVEDIADDLLKLYAERSQLKGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A V + + +I ++ ++ S
Sbjct: 597 FSAD---DDDQREFEEDFAYVETDDQLRSIKEVKADMESDKP 635
>gi|268608669|ref|ZP_06142396.1| transcriptional regulator, CarD family protein [Ruminococcus
flavefaciens FD-1]
Length = 165
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 67/165 (40%), Gaps = 7/165 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV--GKAIDIGMR 70
+ TG+ ++Y + G+ +T I+++++ G + E++++ + + M
Sbjct: 1 MYSTGDIVMYGSFGICKVTAIEKRDLTGEEQEYYILKHINSEKNIFYVPINNVTALSKMH 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
+ V+ + + + + +R +EY I D+ I +++ L+ +
Sbjct: 61 PICSKAEVDELISHMDSEELIWIDNDIKRKEEYSRIIKDADIHEIIRLIKTLYLRRKELA 120
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ ++ A N + E A I + E + IE +++
Sbjct: 121 VSGKKLRSTDENYLSLAENMLFEEFAYALDIDKSEVVEYIEKHIA 165
>gi|323142048|ref|ZP_08076896.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
12067]
gi|322413435|gb|EFY04306.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
12067]
Length = 1090
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 24/182 (13%)
Query: 1 MTFQQK-----RDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
M +++ + Q F + G+++V+ HG+G ++ EV G+ ++ ++A+
Sbjct: 404 MQKRKRLHTKNQGQQLQYFSDIKAGDYVVHKVHGIGRYIGVENVEVDGIHRDYLLLAYAG 463
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + + SE V +++ W R AK
Sbjct: 464 -DDKLYVPVEQVGMLHKYVGSEGS--------VPRLSKMGGNDWKR----TTAKAAKAIT 510
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E++R + P ++S + + + +AI I+ ++
Sbjct: 511 ELAEELLRLYAQRQIMPGHAFSPDCQLQ---KDFEAAFPYEETPDQLKAIAEIKADMEKP 567
Query: 173 SS 174
Sbjct: 568 QP 569
>gi|163848640|ref|YP_001636684.1| transcription-repair coupling factor [Chloroflexus aurantiacus
J-10-fl]
gi|222526576|ref|YP_002571047.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
gi|163669929|gb|ABY36295.1| transcription-repair coupling factor [Chloroflexus aurantiacus
J-10-fl]
gi|222450455|gb|ACM54721.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
Length = 1185
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 18/180 (10%), Positives = 65/180 (36%), Gaps = 22/180 (12%)
Query: 1 MTFQQKRD--AMRQGF----RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ ++++ R F + G+++V+ HG+ + + V+ ++ E+ V+ + +
Sbjct: 472 LAERRRKTGTTDRAAFLRTLKPGDYVVHIEHGIAIFDGMIRRTVSEVEREYLVLRYAGED 531
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
+ VPV + + + + ++ + K+ +
Sbjct: 532 -KIYVPVDQIDRVTRYIGAG------------DGPPTLTRLGTQDWERTKRKVRAAVQDL 578
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E++R + + ++S ++ + + + + AI ++ ++ +
Sbjct: 579 AEELLRLYAQRQLKSGYAFSPDNEWQR---ELEASFPYLETDDQLRAIAEVKADMEKPTP 635
>gi|324997533|ref|ZP_08118645.1| transcription-repair coupling factor [Pseudonocardia sp. P1]
Length = 1211
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 58/178 (32%), Gaps = 22/178 (12%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKMC 56
T +++ + G+++V+ HG+G E+KE+ V G E+ V+ + +
Sbjct: 508 TPRRRNAVDLAVLQPGDYVVHNQHGIGRFVEMKERTVQGATREYLVLEYASSKRGQPADR 567
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VP +I E V + + + A
Sbjct: 568 LFVPTDALDEISRYVGGEQPSVNKL--------------GGADWAKTKGRARKAVKDIAA 613
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+V+ + P ++ ++ + + + AI+ ++ ++
Sbjct: 614 GLVQLYAARQASPGHAFGADTPWQR---ELEDAFPYTETPDQLSAIDEVKKDMERPVP 668
>gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
5501]
gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
5501]
Length = 1175
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + + G+++V+ HG+G +K EV G ++ +I + + L VP +
Sbjct: 499 KISSFEELNVGDYVVHENHGIGKYLGVKTLEVQGHNQDYLLIKYADED-KLYVPTDQVNL 557
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + L + ++ E++ +
Sbjct: 558 IQKY--VGKEGNKPKLYSLGSND----------WARVKQRVKESVQEMAEELLDIYAERE 605
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++SE +++ + + + + I ++ ++ S
Sbjct: 606 VKDGYAFSEDTVWQ---QEFESDFPYEETPDQLKTIEEVKEDMESPQP 650
>gi|298253895|ref|ZP_06977482.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
gi|297532038|gb|EFH71013.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
Length = 1202
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 16/182 (8%), Positives = 55/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFD-----K 52
++++ + G+ +V+ HG+G +K++ + E+ VI +
Sbjct: 515 PKRRRKAIDLMELKPGDFVVHEQHGIGCFVGMKQRNIAVSGGSATREYLVIEYAPSKRNA 574
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +E + + + AK
Sbjct: 575 PNDKLFIPTDQLDLVSKYIGAEIPKLNKL--------------GGSDWAQTKAKAKKHVH 620
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+++ ++S+ ++ + + + I+ ++ ++ +
Sbjct: 621 EIAENLIKLYSARQQSRGFAFSKDTPWQ---KELEDAFPYQETADQLTTIDEVKADMENP 677
Query: 173 SS 174
Sbjct: 678 IP 679
>gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
TA208]
Length = 1177
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ + ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++ +
Sbjct: 605 AFSPDHEMQR---QFEAAFPYQETDDQLRSIQEIKKDMERERP 644
>gi|296136148|ref|YP_003643390.1| transcription-repair coupling factor [Thiomonas intermedia K12]
gi|295796270|gb|ADG31060.1| transcription-repair coupling factor [Thiomonas intermedia K12]
Length = 1160
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 51/182 (28%), Gaps = 27/182 (14%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
++K++ + G+ +V+ HG+G + E ++ EF + +
Sbjct: 466 RRRKQEQASNVDALIHDLAELQPGDPVVHANHGIGRYQGLAELDLGDGPAEFLHLVYAN- 524
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L VPV + IG + + L + K
Sbjct: 525 DAVLYVPVSQLHLIGRYSGAAQE--DAPLHTLGSGQ--------------WDKARRKAAE 568
Query: 114 AIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + +L ++ + + + AI+ + ++ S
Sbjct: 569 QVRDAAAELLNIYARRAAHQGHAFRYSPQDYEAFAASFGFEETPDQAAAIHAVVQDMISP 628
Query: 173 SS 174
Sbjct: 629 KP 630
>gi|163736366|ref|ZP_02143785.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
BS107]
gi|161390236|gb|EDQ14586.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
BS107]
Length = 1155
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + + L
Sbjct: 459 PKKRRKAENFLTETQSLSPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYA-EHSKL 517
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+
Sbjct: 518 YLPVENIELLSKY-----GHDEGLLDRLGGGA----------WQAKKAKLKERIREMADR 562
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI+ + +L S S
Sbjct: 563 LIRVAAERALRKAPMM---DPPPHAWEEFSARFPYQETDDQLRAISEVMEDLQSGSP 616
>gi|163741099|ref|ZP_02148491.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
2.10]
gi|161385452|gb|EDQ09829.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
2.10]
Length = 1155
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + + L
Sbjct: 459 PKKRRKAENFLTETQSLSPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYA-EHSKL 517
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+
Sbjct: 518 YLPVENIELLSKY-----GHDEGLLDRLGGGA----------WQAKKAKLKERIREMADR 562
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI+ + +L S S
Sbjct: 563 LIRVAAERALRKAPMM---DPPPHAWEEFSARFPYQETDDQLRAISEVMEDLQSGSP 616
>gi|256833153|ref|YP_003161880.1| transcription-repair coupling factor [Jonesia denitrificans DSM
20603]
gi|256686684|gb|ACV09577.1| transcription-repair coupling factor [Jonesia denitrificans DSM
20603]
Length = 1216
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 16/178 (8%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKMC 56
M +++ + G+ +V+ HGVG E+ ++ + E+ V
Sbjct: 520 MPSRRRNVVDPLQLKAGDFVVHEQHGVGKFVELVQRTLGAPGNQATREYLV--------- 570
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
++ + G R +++ K G+ M Q+ AK
Sbjct: 571 IEYAASRRGQPGDRLFVPMDQLDQVTKYTGGEQPSVNKMGGADWQKTKAKARKAIKQIAG 630
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E++R + +YS ++ + A + + + I+ ++ ++
Sbjct: 631 ELIRLYSARMATQGFAYSPDTPWQR---ELEDAFAYIETPDQLATIDEVKADMEKMIP 685
>gi|163841705|ref|YP_001626109.1| transcription-repair coupling factor [Renibacterium salmoninarum
ATCC 33209]
gi|162955181|gb|ABY24696.1| transcription-repair coupling factor [Renibacterium salmoninarum
ATCC 33209]
Length = 1278
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 14/176 (7%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK--LEFFVIAFDKDKMCLK 58
M +++ R G+ +V+ HG+G E+ +++VAG E+ V L+
Sbjct: 587 MPSKRRNAVDPLQLRGGDFVVHEQHGIGRFLELIQRKVAGTDGSREYLV---------LE 637
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
K G R +++ V G A M K E+
Sbjct: 638 YAPSKRGAPGDRLFVPTDQLDQITAYVGGDAPALSKMGGSDWASTKNKARKAVKEIAGEL 697
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + S+S ++ + V + + IN ++ ++ +
Sbjct: 698 IRLYSARMASRGFSFSADTPWQR---ELEEAFPYVETPDQLTTINEVKADMEREIP 750
>gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
DSM 7]
gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
DSM 7]
gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
LL3]
Length = 1177
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ + L VPV + +
Sbjct: 498 SELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYL-NIHYQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ + ++++ ++
Sbjct: 557 GSE------------GKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++ +
Sbjct: 605 AFSPDHEMQR---QFEAAFPYQETDDQLRSIQEIKKDMERERP 644
>gi|71907594|ref|YP_285181.1| transcription-repair coupling factor [Dechloromonas aromatica RCB]
gi|71847215|gb|AAZ46711.1| transcription-repair coupling factor [Dechloromonas aromatica RCB]
Length = 1147
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ +HG+G + ++ + EF ++ L VPV + I
Sbjct: 470 DLTELKVGDPVVHESHGIGRYRGLIRMDLGNGEQEFL-ELHYANEAKLFVPVAQLHVISR 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+E L + K + +L +
Sbjct: 529 YSGAEPEAAP--LHTLGSGQ--------------WEKAKRRAAEQARDTAAELLTLYAAR 572
Query: 130 EKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + +AI + ++ S
Sbjct: 573 AARQGHAFSFQENDYEAFADGFGFEETHDQAQAIAAVIEDMRSGKP 618
>gi|119960591|ref|YP_947136.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
gi|119947450|gb|ABM06361.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
Length = 1210
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 61/174 (35%), Gaps = 6/174 (3%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ G+ +V+ HG+G E+ +++VAG A ++ + L+
Sbjct: 513 MPSKRRNAVDPLQLHAGDFVVHEQHGIGRFVELIQRKVAGTSSS---DAGLREYLVLEYA 569
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G A M +K E++R
Sbjct: 570 PSKRGAPGDRLFVPTDQLDQVTRYVGGDAPALSKMGGADWASTKSKARKAVKEIAGELIR 629
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ ++ + V + + IN ++ ++ +
Sbjct: 630 LYSARMASRGHAFAPDTPWQR---ELEEAFPYVETPDQLTTINEVKADMEREIP 680
>gi|297626903|ref|YP_003688666.1| Transcription-repair coupling factor [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296922668|emb|CBL57245.1| Transcription-repair coupling factor [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 1232
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ + + G+ +V+ HGVG E+ ++ VAG E+ V ++
Sbjct: 509 MPTKRRNQVVPLELKPGDPLVHEQHGVGRFVEMTQRTVAGAIREYMV---------IEYA 559
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+A M + ++ A +++
Sbjct: 560 ASKRGQPGDRLYVPMDQLDQVTRYVGGEAPALDKMGGAEWKHRKSRARKAVRQVAAGLIK 619
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S ++ + + + I ++ ++
Sbjct: 620 LYAARQASRGHAFSPDTPWQHEME---DAFRYEETPDQLACITDVKHDMEQIVP 670
>gi|225867624|ref|YP_002743572.1| transcription-repair coupling factor [Streptococcus equi subsp.
zooepidemicus]
gi|225700900|emb|CAW97563.1| putative transcription-repair coupling factor [Streptococcus equi
subsp. zooepidemicus]
Length = 1164
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ + G+ + +V + + +PV + +
Sbjct: 487 ELSKGDYVVHSVHGIGRFLGIETINIQGVHRD-YVTIQYQQSDRISLPVDQLESLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ ++ ++++ Q
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQRVKKQVEDIADDLLKLYAERSQQKGFQ 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I ++ ++ S
Sbjct: 594 FSPDDELQKA---FEEDFAFVETDDQVRSIKEVKKDMESIKP 632
>gi|218134019|ref|ZP_03462823.1| hypothetical protein BACPEC_01909 [Bacteroides pectinophilus ATCC
43243]
gi|217991394|gb|EEC57400.1| hypothetical protein BACPEC_01909 [Bacteroides pectinophilus ATCC
43243]
Length = 191
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 66/179 (36%), Gaps = 5/179 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
++ + R+ R F G+ +V +GV I +I + + ++ ++++ +K
Sbjct: 11 ISTKGIREMERHMFEKGDMVVCGNNGVCRIEKISKLDSIDSEVLYYIMQPVYEKSSTVYI 70
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ +R + +K + + ++ R +Y A + ++R
Sbjct: 71 PVEGHSTPIRNIMTKDEAMDFIKKIPTISEIELAGDRERESQYKACMEPAQAEGWVRIIR 130
Query: 121 DLHRTDSQ-----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L+R + + + + + + A N + E+A + + E IE L
Sbjct: 131 TLYRRNEERAAAGKKTINMDERYMKMAKNCLYGELAVSLGMKKDEVEAFIESILDKDEE 189
>gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis
M23590]
gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis
M23590]
Length = 1173
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q + G+++V+ HGVG ++ EV + ++ + K L VPV +
Sbjct: 489 KIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPKLNKLGGSEWKKTKAKVQQSVEDIAEELIALYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + A + + + ++I I+ ++ +
Sbjct: 596 MSVGYQFGEDTAEQQAFEL---DFPYELTPDQAKSIEEIKADMELQKP 640
>gi|58617486|ref|YP_196685.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
Gardel]
gi|58417098|emb|CAI28211.1| Transcription-repair coupling factor [Ehrlichia ruminantium str.
Gardel]
Length = 1123
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 60/161 (37%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +++ +G+G I +++ +V +F I + + L +PV I
Sbjct: 465 DLNIGDIVIHKDYGIGKIAKLETIKVLDNYHDFLKIEYYNND-KLFLPVENINLITRYSN 523
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ R+ T W +R + I ++ ++L + ++ +
Sbjct: 524 QDSNITL---------DRLGSTSWQQRQTKLKNH--------IQKIAKELIKIEAARQLM 566
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
L + E A + + +AI IE +LSS
Sbjct: 567 QGTPFLPNNIYKNFCDEFAYTETTDQLQAIQDIENDLSSGK 607
>gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262]
gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262]
Length = 1179
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 499 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 558 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 606 AFSADDEMQR---EFEEAFPYQETDDQLRSISEIKKDMERPRP 645
>gi|281414624|ref|ZP_06246366.1| transcriptional regulator, CarD family protein [Micrococcus luteus
NCTC 2665]
Length = 137
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 69/135 (51%)
Query: 36 QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM 95
+ + G + + + + + ++VP +G+R + +A +E ++++R + + T
Sbjct: 2 RTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVVDAEGLEHVMEVLRAEHVEEPTN 61
Query: 96 WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNS 155
WSRR + K+ SGD+ +AEVVRDL R D S E+++ A +V E+A
Sbjct: 62 WSRRYKANLEKLASGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLSKARQVLVSELALAKK 121
Query: 156 ISEPEAINLIEVNLS 170
++E EA ++ L
Sbjct: 122 VTEEEAEGRLDKVLE 136
>gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str.
1873]
gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str.
1873]
Length = 1169
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ HG+G IK+ EV G K ++ L VPV +
Sbjct: 494 KIKSFAELKPGDYVVHTNHGIGVYKGIKQLEVQGHKKDYL-ELSYTAGDTLYVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GK+ + + K+ E+V+
Sbjct: 553 VQKYIGSE------------GKSPKVNKLGGSEWIKAKTKVKKAINEIAEELVKLYAIRS 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ +++ + E + + AI I+ ++ S +
Sbjct: 601 TLKGHKFNKDTIWQ---KQFEEEFPYDETPDQLTAIQEIKSDMESGKA 645
>gi|326386142|ref|ZP_08207766.1| CarD family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209367|gb|EGD60160.1| CarD family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 151
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 82/150 (54%), Positives = 111/150 (74%)
Query: 31 TEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKAR 90
E++ +E+AGMKLE +V+ F+K++M L+VPV K IGMRKLS + AL ++GK +
Sbjct: 2 VELQNEEIAGMKLELYVLRFEKERMTLRVPVNKVEAIGMRKLSSDKTLREALDTLKGKPK 61
Query: 91 VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREI 150
VKRTMWSRRAQEY+AKINSGDL+AIAEV RDL R D QPE+SYSERQ++E+A +R+ RE+
Sbjct: 62 VKRTMWSRRAQEYEAKINSGDLVAIAEVTRDLFRADDQPEQSYSERQIFEAASSRLAREL 121
Query: 151 AAVNSISEPEAINLIEVNLSSKSSKTEKST 180
AA+ EP A+ I V L+ + K ++
Sbjct: 122 AAMEKTDEPAALKKILVILNEHAPKYYETV 151
>gi|300703955|ref|YP_003745557.1| transcription-repair ATP-dependent coupling factor, helicase
[Ralstonia solanacearum CFBP2957]
gi|299071618|emb|CBJ42942.1| transcription-repair ATP-dependent coupling factor, helicase
[Ralstonia solanacearum CFBP2957]
Length = 1147
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ + EF +
Sbjct: 463 RRKQEQATAVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLD-YDKG 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVHQLHVISRYSGADPDTAP--LHQLGSGQ--------------WEKAKRRAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDETPDQAAAITAVIADMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|207743032|ref|YP_002259424.1| transcription-repair coupling factor protein [Ralstonia
solanacearum IPO1609]
gi|206594429|emb|CAQ61356.1| transcription-repair coupling factor protein [Ralstonia
solanacearum IPO1609]
Length = 1147
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ + EF +
Sbjct: 463 RRKQEQATAVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLD-YDKG 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVHQLHVISRYSGADPDTAP--LHQLGSGQ--------------WEKAKRRAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDETPDQAAAITAVIADMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|207724177|ref|YP_002254575.1| transcription-repair coupling factor protein [Ralstonia
solanacearum MolK2]
gi|206589387|emb|CAQ36349.1| transcription-repair coupling factor protein [Ralstonia
solanacearum MolK2]
Length = 1147
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ + EF +
Sbjct: 463 RRKQEQATAVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLD-YDKG 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVHQLHVISRYSGADPDTAP--LHQLGSGQ--------------WEKAKRRAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDETPDQAAAITAVIADMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|83745897|ref|ZP_00942954.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
gi|83727587|gb|EAP74708.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
Length = 1206
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ + EF +
Sbjct: 522 RRKQEQATAVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLD-YDKG 580
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 581 SKLYVPVHQLHVISRYSGADPDTAP--LHQLGSGQ--------------WEKAKRRAAQQ 624
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + + AI + +++S
Sbjct: 625 IRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDETPDQAAAITAVIADMTSGK 684
Query: 174 S 174
Sbjct: 685 P 685
>gi|219850580|ref|YP_002465013.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
9485]
gi|219544839|gb|ACL26577.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
9485]
Length = 1182
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 16/180 (8%), Positives = 64/180 (35%), Gaps = 22/180 (12%)
Query: 1 MTFQQKRDAMR------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++ ++++ + + + G+++V+ HG+ + + V ++ E+ V+ + +
Sbjct: 471 LSERRRKTTVADRTAFLRSLKPGDYVVHIEHGIAVFDGMIRRTVGEVEREYLVLRYAGED 530
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
+ VPV + + + + ++ + K+ +
Sbjct: 531 -KIYVPVDQIDRVTRYIGAG------------DGPPTLTRLGTQDWERTKRKVRAAVQEL 577
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E++ + +P ++S ++ + + + + AI ++ ++
Sbjct: 578 AEELLHLYAQRQLKPGFAFSPDNEWQR---ELEASFPYLETDDQLRAIAEVKADMERPIP 634
>gi|116333178|ref|YP_794705.1| transcription-repair coupling factor [Lactobacillus brevis ATCC
367]
gi|116098525|gb|ABJ63674.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus brevis ATCC 367]
Length = 1180
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ V G+ ++ I +D L +PV + I
Sbjct: 494 TDLKPGDYVVHVNHGIGKFIGMQTLTVDGVHQDYMTID-YQDNAQLFIPVTQLNLIQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE + + + G AK S I ++ +L ++
Sbjct: 553 SSEDKKPK--INKLGGSE--------------WAKTKSKVAAKIEDIADELVDLYAKRSA 596
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L + + + I ++ ++
Sbjct: 597 EKGYAFPVDDSLQHDFENDFPYAETPDQLRTIEEVKHDMEKPRP 640
>gi|268318833|ref|YP_003292489.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
FI9785]
gi|262397208|emb|CAX66222.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
FI9785]
Length = 1165
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 490 ELKPGDYVVHVNHGIGRFEGIKTLDVDGKKRD-YITITYQHHDQLFVPADQLGLVQKYVA 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE G+ + S + ++ S +++ + +S+ +
Sbjct: 549 SE------------GRVPHINKLGSSEWTKTKKRVQSKVEDIADDLIELYAKRESEKGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 597 FSPDDDLQ---KEFEDAFPYPETPDQLRSIREIKADMESTKP 635
>gi|28209962|ref|NP_780906.1| transcription-repair coupling factor [Clostridium tetani E88]
gi|28202397|gb|AAO34843.1| transcription-repair coupling factor [Clostridium tetani E88]
Length = 1030
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 25/180 (13%)
Query: 3 FQQKRDAMRQGF---------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
+ K+ ++GF + G++IV+ HG+G IK+ EV G + ++ + +
Sbjct: 489 RKNKKLTNKKGFSRIKSFTDLKPGDYIVHVNHGIGVYKGIKQLEVGGHRKDYLELTYYG- 547
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L VPV + + E GK + + + K
Sbjct: 548 DDKLYVPVEQLDIVQKYIGGE------------GKTPKINKLGNAEWTKTKNKAKKSIEE 595
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++V + +S+ +++ + E + + AI I+ ++ S
Sbjct: 596 IAEDLVNLYAVRSTLKGYKFSKDTVWQR---QFEEEFPHEETPDQITAIEEIKNDMQSNR 652
>gi|298244980|ref|ZP_06968786.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
44963]
gi|297552461|gb|EFH86326.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
44963]
Length = 1169
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 62/180 (34%), Gaps = 24/180 (13%)
Query: 2 TFQQKRDAMRQGF----RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ Q+++ F G+++V+ HG+G + + +AG++ E+ +I + L
Sbjct: 487 SQQRRKPVTPASFLAEVNPGDYVVHQEHGIGRFEGLTKMNLAGVEREYLLIHYAGTD-KL 545
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+P + + + AL + + S ++ +
Sbjct: 546 YIPTDQLDRV--TRFIGMGDSVPALSKLGTTE--------------WTRAKSRVKESVQD 589
Query: 118 VVRDLHRTDSQPEKSYSERQLYESAL---NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
V R+L + S E + +S + + + AI ++ ++ +
Sbjct: 590 VARELLKLYSAREAAPGYAFSPDSEQPWLQELEDAFPYEETPDQARAIEEVKADMERPKA 649
>gi|329915573|ref|ZP_08276288.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium
IMCC9480]
gi|327544874|gb|EGF30242.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium
IMCC9480]
Length = 1120
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 27/180 (15%)
Query: 5 QKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
+K++A + G+ +V+ HG+G + ++ + EF + + K +
Sbjct: 436 KKQEAATQVESMVRDLSELKIGDPVVHSNHGIGRYMGLVSMDLGEGETEFLYLDYAK-EA 494
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I + + L + K I
Sbjct: 495 KLYVPVSQLHVISRYSGASPE--DAPLHSLGSGQ--------------WEKAKRRAAQQI 538
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L ++ + ++ + AIN + +++S
Sbjct: 539 RDTAAELLNLYARRALRKGHAFEFSAHDYANFADSFGFEETVDQAAAINAVIGDMTSGKP 598
>gi|116626979|ref|YP_819598.1| transcription-repair coupling factor [Streptococcus thermophilus
LMD-9]
gi|116100256|gb|ABJ65402.1| Transcription-repair coupling factor (superfamily II helicase)
[Streptococcus thermophilus LMD-9]
gi|312277424|gb|ADQ62081.1| Transcription-repair coupling factor (Superfamily II helicase)
[Streptococcus thermophilus ND03]
Length = 1168
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ +D + +P+ + +
Sbjct: 489 ELEKGDYVVHQTHGIGQFKGIETIEIKGVHRDYL-TIQYQDAATISLPIEQIESLSKYVS 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
GK + R Q+ K++ +++ +
Sbjct: 548 V------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADNLLKLYAERSQLKGFA 595
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + E + V ++ + +I I+ ++ S
Sbjct: 596 FSPD---DDNQRDFEDEFSYVETVDQLRSIKEIKADMESDKP 634
>gi|238783787|ref|ZP_04627806.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
43970]
gi|238715338|gb|EEQ07331.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
43970]
Length = 725
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 29/184 (15%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G+A +
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADE--NAPLHKLGGEA--------------WGRARQKA 557
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +V +L +Q + + + + + +AIN + ++
Sbjct: 558 AEKVRDVAAELLDIYAQRAAKSGFKFKLDREQYQLFCQSFPFETTPDQEQAINAVLSDMC 617
Query: 171 SKSS 174
+
Sbjct: 618 QPLA 621
>gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
Length = 1186
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ + G+ ++ + + L VPV + I
Sbjct: 506 SELKVGDYVVHINHGIARYVGMETLNIGGVHKDYL-NLIYQGEDKLFVPVDQLEMIQKYV 564
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GKA + + +K+ + ++++ +++
Sbjct: 565 GSE------------GKAPRLHKLGGTEWKRVKSKVKASVQDIADDLIKLYAEREAEKGY 612
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + +I I+ ++
Sbjct: 613 AFTPDSEMQR---EFEDAFPYQETDDQIRSIKEIKKDMERPRP 652
>gi|260664822|ref|ZP_05865673.1| transcription-repair coupling factor [Lactobacillus jensenii
SJ-7A-US]
gi|260561305|gb|EEX27278.1| transcription-repair coupling factor [Lactobacillus jensenii
SJ-7A-US]
Length = 1161
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 488 DLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRD-YITITYQGHDQLFVPADQLSLVQKYVG 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE H + + + + + S ++++ +S+ +
Sbjct: 547 SEGHRPK------------VNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + A V + + + N I+ ++ +
Sbjct: 595 FSKDNDLQKA---FEDAFPYVETPDQLRSSNEIKADMEKPKA 633
>gi|238855038|ref|ZP_04645366.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
gi|282934824|ref|ZP_06340058.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
gi|238832282|gb|EEQ24591.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
gi|281301096|gb|EFA93406.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
Length = 1161
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 488 DLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRD-YITITYQGHDQLFVPADQLSLVQKYVG 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE H + + + + + S ++++ +S+ +
Sbjct: 547 SEGHRPK------------VNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + A V + + + N I+ ++ +
Sbjct: 595 FSKDNDLQKA---FEDAFPYVETPDQLRSSNEIKADMEKPKA 633
>gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1
BON]
gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1
BON]
Length = 1159
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+R G+++V+ +G+G IK+ V G ++ I + L VP
Sbjct: 478 KAGQRVTAFSDLNIGDYVVHENYGIGQYMGIKKLTVEGKSRDYLFIRYADGD-NLYVPTD 536
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + G + + + AK+ E+++
Sbjct: 537 RMSLVQRYIGG------------DGASPRLSKLGGSEWSKTKAKVRESVRKMAGELLKLY 584
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S ++++ ++ + + +AI I+ ++ S
Sbjct: 585 ASRYTTKGHAFSPDTVWQA---QLEESFPYQETPDQLQAIEEIKADMESDKP 633
>gi|312138702|ref|YP_004006038.1| transcription repair coupling factor mfd [Rhodococcus equi 103S]
gi|311888041|emb|CBH47353.1| transcription repair coupling factor Mfd [Rhodococcus equi 103S]
Length = 1228
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 58/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ G+ +V+ HG+G E+ E+ + G + E+ V ++
Sbjct: 517 MPAKRRNQVDPLALTAGDMVVHDQHGIGRFVEMVERTIGGARREYLV---------IEYA 567
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ + Q K E+V+
Sbjct: 568 ASKRGHPGDRLFVPMESLDQLSRYVGGEMPALSKLGGSDWQNTKRKARKAVREIAGELVQ 627
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + A + + I+ ++ ++
Sbjct: 628 LYAARQAAPGHAFGPDTPWQKEME---DAFAFTETHDQLTVIDEVKADMEKPVP 678
>gi|325676609|ref|ZP_08156287.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
gi|325552787|gb|EGD22471.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
Length = 1225
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 58/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ G+ +V+ HG+G E+ E+ + G + E+ V ++
Sbjct: 514 MPAKRRNQVDPLALTAGDMVVHDQHGIGRFVEMVERTIGGARREYLV---------IEYA 564
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ + Q K E+V+
Sbjct: 565 ASKRGHPGDRLFVPMESLDQLSRYVGGEMPALSKLGGSDWQNTKRKARKAVREIAGELVQ 624
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + A + + I+ ++ ++
Sbjct: 625 LYAARQAAPGHAFGPDTPWQKEME---DAFAFTETHDQLTVIDEVKADMEKPVP 675
>gi|209520701|ref|ZP_03269451.1| transcription-repair coupling factor [Burkholderia sp. H160]
gi|209498863|gb|EDZ98968.1| transcription-repair coupling factor [Burkholderia sp. H160]
Length = 1159
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 52/181 (28%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 463 RRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAG-D 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + + I ++ L + K
Sbjct: 522 SKLYVPVAQLLVISRYSGADPESAP--LHSLGSGQ--------------WEKAKRKAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ E + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRAAREGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W1]
gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W1]
Length = 1169
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E +SA + + + ++I I+ ++ +
Sbjct: 596 MSVGYKYGEDTAEQSA---FEHDFPYELTPDQDKSIEEIKSDMERERP 640
>gi|116669806|ref|YP_830739.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
gi|116609915|gb|ABK02639.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
Length = 1222
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 9/174 (5%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ G+H+V+ HG+G E+ +++VAG ++ + L+
Sbjct: 528 MPSKRRNAVDPLQLVAGDHVVHEQHGIGRFVELIQRKVAGG------GEGVREYLVLEYA 581
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G M +K E++R
Sbjct: 582 PSKRGAPGDRLFVPTDQLDQVTRYVGGDTPALSKMGGSDWASTKSKARKAVKEIAGELIR 641
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + V + + IN ++ ++ +
Sbjct: 642 LYSARMASKGFAFGPDTPWQR---ELEEAFPYVETPDQLTTINEVKADMEREIP 692
>gi|167772369|ref|ZP_02444422.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
17241]
gi|167665472|gb|EDS09602.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
17241]
Length = 1157
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 17/174 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ K+ G+++V+ AHG+G I ++++ G+ ++ I + L VPV
Sbjct: 479 PKEGKKLRDISDLTPGDYVVHTAHGIGVFEGIVKRDIQGVVKDYIKIRYAGTD-TLFVPV 537
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + R S+ K A+ ++ ++
Sbjct: 538 TQLDLVSKYIGMRDDANVRL---------------SKLNSIEWQKTRQRVKKAVEDMAKE 582
Query: 122 LHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
L ++ ++ R A + + I+ I+ ++ S
Sbjct: 583 LTELYAKRMAVKGYAFSPDTDWQNDFERRFAYDETDDQLRCIDEIKADMESSVP 636
>gi|254974810|ref|ZP_05271282.1| putative regulatory protein [Clostridium difficile QCD-66c26]
gi|255092198|ref|ZP_05321676.1| putative regulatory protein [Clostridium difficile CIP 107932]
gi|255313937|ref|ZP_05355520.1| putative regulatory protein [Clostridium difficile QCD-76w55]
gi|255516617|ref|ZP_05384293.1| putative regulatory protein [Clostridium difficile QCD-97b34]
gi|255649717|ref|ZP_05396619.1| putative regulatory protein [Clostridium difficile QCD-37x79]
gi|260682872|ref|YP_003214157.1| putative regulatory protein [Clostridium difficile CD196]
gi|260686470|ref|YP_003217603.1| putative regulatory protein [Clostridium difficile R20291]
gi|306519829|ref|ZP_07406176.1| putative regulatory protein [Clostridium difficile QCD-32g58]
gi|260209035|emb|CBA62142.1| putative regulatory protein [Clostridium difficile CD196]
gi|260212486|emb|CBE03403.1| putative regulatory protein [Clostridium difficile R20291]
Length = 165
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 74/163 (45%), Gaps = 1/163 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRK 71
++ GE ++YP G I+ + +++ +++ + + + +PV A IG+R
Sbjct: 1 MYKIGESVMYPKEGACYISGLVTKDINHHIQKYYELTVIYNSNLKISIPVLNADKIGVRP 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + VE ++ + + +R + Y K +SGD+ I ++++ L D+ +
Sbjct: 61 IMDENEVENFIQSLDKVDCLWVFDRKKRLKLYHDKFHSGDVFEIVKLIKMLMIQDNSKQL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ A + E+AA S + ++ ++ + +
Sbjct: 121 CSTDKDFLNKAQRFALSELAAAQCKSYTIVLEEMKNHILNSKN 163
>gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC
11563]
gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC
11563]
Length = 1233
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 28/186 (15%), Positives = 64/186 (34%), Gaps = 30/186 (16%)
Query: 2 TFQQKRDAMR------------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
T +++R A + Q G+++V+ HG+G T I+ E AG ++ I
Sbjct: 476 TQKKRRKAKKPLISNAERIKNYQQLEVGDYVVHVNHGIGRYTGIETIEFAGTHQDYLTIV 535
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
F + VP+ + + +E G+ M + K++S
Sbjct: 536 FADQAA-IHVPIDQIDLVQKYVSAE------------GREPKLNKMGGSEWAKTKQKVSS 582
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVN 168
E++ ++Q ++ ++A + + +I I+ +
Sbjct: 583 KIEDIADELIDLYASREAQKGFAFG----PDTAEQAEFENAFPYTETDDQVRSIAEIKKD 638
Query: 169 LSSKSS 174
+ +
Sbjct: 639 MEVEKP 644
>gi|256848382|ref|ZP_05553825.1| transcription-repair coupling factor [Lactobacillus coleohominis
101-4-CHN]
gi|256714980|gb|EEU29958.1| transcription-repair coupling factor [Lactobacillus coleohominis
101-4-CHN]
Length = 1179
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G IK V G+ ++ VI +D + VPV + +
Sbjct: 495 TDLKPGDYVVHVNHGIGIFAGIKTMTVDGVHQDYIVID-YRDHAQIFVPVTQLNLVQKYV 553
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE+ + + ++ ++V + +
Sbjct: 554 SSESTK------------PHINKLGGNEWAKTKRRVAQKVENIAGDLVDLYAQRKTAKGF 601
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + + + E + + +IN ++ ++
Sbjct: 602 AYPKDDYLQ---EKFDHEFPYSETKDQLRSINEVKADMEKPKP 641
>gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 1168
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G +K EV G ++ +D L +PV + I
Sbjct: 485 TDLKPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYL-TISYRDSAKLFIPVTQLNMIQKYV 543
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + Q+ K+ S +++ + D++
Sbjct: 544 SSE------------DKKPRINKLGGSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGY 591
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + N + + + + I+ ++
Sbjct: 592 AYPPDDSLQ---NEFEARFPYTETPDQLRSADEIKHDMEHNKP 631
>gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
Length = 1169
Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HGVG ++ EV + ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPKLNKLGGSEWKKTKAKVQQSVEDIADELIALYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E + + + + + ++I I+ ++ +
Sbjct: 596 MSVGYQYGEDT---AEQHDFEMDFPYELTPDQAKSIEEIKEDMEKERP 640
>gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
11577]
gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
11577]
Length = 1168
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G +K EV G ++ +D L +PV + I
Sbjct: 485 TDLKPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYL-TISYRDSAKLFIPVTQLNMIQKYV 543
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + Q+ K+ S +++ + D++
Sbjct: 544 SSE------------DKKPRINKLGGSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGY 591
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + N + + + + I+ ++
Sbjct: 592 AYPPDDSLQ---NEFEARFPYTETPDQLRSADEIKHDMEHNKP 631
>gi|193212321|ref|YP_001998274.1| transcription-repair coupling factor [Chlorobaculum parvum NCIB
8327]
gi|193085798|gb|ACF11074.1| transcription-repair coupling factor [Chlorobaculum parvum NCIB
8327]
Length = 1097
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 65/178 (36%), Gaps = 21/178 (11%)
Query: 2 TFQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++++ Q + G+++V+ +GVG ++ +V + E V+ +
Sbjct: 385 PHRKRKVRGISLKELQRLKVGDYVVHEDYGVGVFRSLETIQVGDSEQEC-VLVEYEGGDQ 443
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L V V + SE + +++ + WS + ++ K+ A
Sbjct: 444 LYVNVQNINLLSKYTASEGS--------LPNLSKLGSSKWSAKKEKVRKKLR----DIAA 491
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++R P ++ +++ + + +AI ++ ++ S S
Sbjct: 492 KLIRIYAERKMTPGFAFGPDSIFQR---EFEASFMFEETPDQLKAIQEVKKDMQSPSP 546
>gi|296157812|ref|ZP_06840646.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1]
gi|295892058|gb|EFG71842.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1]
Length = 1160
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 463 RRRQEQASNVDSMVRDLSELKLGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAG-D 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVAQLHVISRYSGADPESAP--LHSLGSGQ--------------WEKAKRKAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ E + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRAARSGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|91783503|ref|YP_558709.1| transcription-repair coupling factor [Burkholderia xenovorans
LB400]
gi|91687457|gb|ABE30657.1| transcription-repair coupling factor [Burkholderia xenovorans
LB400]
Length = 1160
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 463 RRRQEQASNVDSMVRDLSELKLGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAG-D 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVAQLHVISRYSGADPESAP--LHSLGSGQ--------------WEKAKRKAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ E + + + AI + +++S
Sbjct: 566 IRDTAAELLNLYARRAARSGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
hominis C80]
gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
hominis C80]
Length = 1169
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HGVG ++ EV + ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPKLNKLGGSEWKKTKAKVQQSVEDIADELIALYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E + + + + + ++I I+ ++ +
Sbjct: 596 MSVGYQYGEDT---AEQHDFEMDFPYELTPDQAKSIEEIKEDMEKERP 640
>gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453]
gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453]
Length = 1175
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I E+ G+ ++ I + L VP+ + I
Sbjct: 487 TELKVGDYVVHQNHGIGKYMGIGTLEINGIHKDYMHILYAGGD-KLSVPIEQIDLIQKYV 545
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + K+ S ++++ S P
Sbjct: 546 GSE------------DKEPKVYKLGGNEWTRVKNKVRSSVQDIADDLIKLYAERQSAPGY 593
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + S + + AI I+ ++
Sbjct: 594 GFEKDT---SEQQEFEDMFPYDETPDQLRAITEIKKDMEQNRP 633
>gi|253996787|ref|YP_003048851.1| transcription-repair coupling factor [Methylotenera mobilis JLW8]
gi|253983466|gb|ACT48324.1| transcription-repair coupling factor [Methylotenera mobilis JLW8]
Length = 1145
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 44/166 (26%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R + +V+ HGVG + ++ + EF ++ + L VPV + I
Sbjct: 476 DLSELRINDPVVHEQHGVGRYKGLINLDLGEGETEFLLLEYYG-DDKLYVPVSQLFLISR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
L + + K L I + +L +Q
Sbjct: 535 YSGGPPESAP--LHRLGSGS--------------WEKAKKKALKQIRDTAAELLNLYAQR 578
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + EAI + ++ S
Sbjct: 579 AARRGHAFTLSLQDYEAFCEGFPFEETADQLEAIENVIKDMQSGRP 624
>gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|123761497|sp|Q49V12|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 1170
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 61/173 (35%), Gaps = 18/173 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++ Q + G+++V+ HGVG ++ EV G+ ++ + K L VPV
Sbjct: 486 TNAEKIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGGVHKDYIKL-QYKGTDQLFVPVD 544
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + SE + L + G K + ++ ++ +L
Sbjct: 545 QMDQVQKYVASEDKSPK--LNKLGGTE--------------WKKTKAKVQQSVEDMADEL 588
Query: 123 HRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
E S + ++A + + + ++I I+ ++ +
Sbjct: 589 IELYKAREMSVGYKFGPDTAEQNDFEIDFPYELTPDQSKSIEEIKQDMEIERP 641
>gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
8290]
gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
8290]
Length = 1168
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G +K EV G ++ +D L +PV + I
Sbjct: 485 TDLKPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYL-TISYRDSAKLFIPVTQLNMIQKYV 543
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + Q+ K+ S +++ + D++
Sbjct: 544 SSE------------DKKPRINKLGGSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGY 591
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + N + + + + I+ ++
Sbjct: 592 AYPPDDSLQ---NEFEARFPYTETPDQLRSADEIKHDMEHNKP 631
>gi|224543056|ref|ZP_03683595.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
15897]
gi|224523996|gb|EEF93101.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
15897]
Length = 1150
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 24/180 (13%)
Query: 3 FQQK--------RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K + + + G+++V+ +G+G I+ V G+ ++ I K
Sbjct: 459 TKKKYIKYRDATKISDYNELKVGDYVVHDTNGIGQYMGIETLVVDGVHKDYLHI-AYKGN 517
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I GK + S + + A++
Sbjct: 518 DILYVPVEQFQLIRKY------------SSRDGKPPRIHALGSPKWAKEKARVRQKVDGL 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ QP ++ + E + + +A+ I+ ++ +
Sbjct: 566 ADDLINLYAERMRQPGFAFEPDGDLQL---EFESEFGYELTPDQAQAVEEIKKDMETPRP 622
>gi|187935467|ref|YP_001885252.1| CarD family transcriptional regulator [Clostridium botulinum B str.
Eklund 17B]
gi|187723620|gb|ACD24841.1| transcriptional regulator, CarD family [Clostridium botulinum B
str. Eklund 17B]
Length = 160
Score = 101 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ +VYP G+G + I+E+ G K ++ +I K+ + + +P+ + +R +
Sbjct: 1 MFKVGDKVVYPMQGIGIVQRIEEKLFCGTKRKYCIIQMLKNSLEIMIPIDRIAKSRLRMI 60
Query: 73 SEAHFVERALKLVRGK--ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
++ + +E L ++ R + KI SG L +V +L +
Sbjct: 61 NDINTLEDILNHIQDTSDPEELNLPSKERYEINLNKIKSGLLEDSLDVFYNLTLINKMKA 120
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +E+Q+ +A N ++ EI + ISE EA +++ ++S
Sbjct: 121 LNSTEKQILNTAQNFLIDEIRVIKDISENEATKILKSSIS 160
>gi|320530140|ref|ZP_08031210.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
gi|320137573|gb|EFW29485.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
Length = 1094
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ +HG+G ++ EVAG+ ++ I L VP + +
Sbjct: 426 REIAPGDYVVHVSHGIGKYLGVETLEVAGVHRDYLHI-QYGGDDKLFVPTDQVGLLQKYI 484
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E G A M + AK ++ +
Sbjct: 485 GAE------------GAAPRLHRMGTADWARARAKAQKSVEDIADHLLEIYAKRKLAAGH 532
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + AI I+ ++ S+
Sbjct: 533 AFTPDDAMQR---EFEEAFPYEETEDQLRAIEEIKRDMESERP 572
>gi|220934531|ref|YP_002513430.1| transcription-repair coupling factor [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995841|gb|ACL72443.1| transcription-repair coupling factor [Thioalkalivibrio sp.
HL-EbGR7]
Length = 1157
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 24/180 (13%)
Query: 3 FQQKRDA--------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++KR G +V+ HGVG +++ V G + EF + +
Sbjct: 466 RRRKRPTRDADAVISNLTDLHPGAPVVHEEHGVGRYLGLQKLAVGGQETEFLALEYAGGD 525
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + ++ L + G+ W++ ++ K
Sbjct: 526 -KLYVPVSSLHLVSRYTGADTEHAP--LHKLGGE------QWAKIRRKAAEKAR-----D 571
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+A + +++ + + + Q + + + AI + +++S
Sbjct: 572 VAAELLEIYARRAARQGQSFDVQA--TGYAAFADSFPFEETPDQARAIEAVLEDMASPRP 629
>gi|313894846|ref|ZP_07828406.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
137 str. F0430]
gi|312976527|gb|EFR41982.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
137 str. F0430]
Length = 1094
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ +HG+G ++ EVAG+ ++ I L VP + +
Sbjct: 426 REIAPGDYVVHVSHGIGKYLGVETLEVAGVHRDYLHI-QYGGDDKLFVPTDQVGLLQKYI 484
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E G A M + AK ++ +
Sbjct: 485 GAE------------GAAPRLHRMGTADWARARAKAQKSVEDIADHLLEIYAKRKLAAGH 532
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + + AI I+ ++ S+
Sbjct: 533 AFTPDDAMQ---HEFEEAFPYEETEDQLRAIEEIKRDMESERP 572
>gi|224282806|ref|ZP_03646128.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
41171]
gi|313139965|ref|ZP_07802158.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
41171]
gi|313132475|gb|EFR50092.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
41171]
Length = 1199
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 505 PKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGTGANKTTREYLVIEYAPSKRGA 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + I +EA + + AK
Sbjct: 565 PADKLFIPTDQLDLISKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ ++S ++ + + + I+ ++ ++
Sbjct: 611 EIAEDLVKLYSARQRTKGFAFSPDTPWQ---KELEDAFPYQETTDQLTTIDDVKSDMEKP 667
Query: 173 SS 174
Sbjct: 668 VP 669
>gi|312874973|ref|ZP_07734992.1| transcription-repair coupling factor [Lactobacillus iners LEAF
2053A-b]
gi|311089718|gb|EFQ48143.1| transcription-repair coupling factor [Lactobacillus iners LEAF
2053A-b]
Length = 1110
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGQKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEASFPYLETPDQIKAIKEIKLDMQKEKP 582
>gi|289551698|ref|YP_003472602.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
HKU09-01]
gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
HKU09-01]
Length = 1173
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q + G+++V+ HGVG ++ EV + ++ + K L VPV +
Sbjct: 489 KIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPKLNKLGGSEWKKTKAKVQQSVEDIAEELIALYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + A + + + ++I I+ ++ +
Sbjct: 596 MSVGYQFGEDTAEQQAFEL---DFPYELTPDQAKSIEEIKADMELQKP 640
>gi|296875514|ref|ZP_06899586.1| transcription-repair coupling factor [Streptococcus parasanguinis
ATCC 15912]
gi|296433438|gb|EFH19213.1| transcription-repair coupling factor [Streptococcus parasanguinis
ATCC 15912]
Length = 1167
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ + +V ++ + +PV + +
Sbjct: 487 ELEKGDYVVHQVHGIGQYLGIETIEISGVHRD-YVSIQYQNGDRISIPVDQIQMLSKYVA 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + R Q+ K+ + ++++ +
Sbjct: 546 S------------DGKAPKINKLNDGRFQKTKQKVQTQVEDIADDLIKLYAERSQLEGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS+ + ++ + + + +I I+ ++ S
Sbjct: 594 YSKD---DENQEAFEQDFPYIETDDQLRSIEEIKKDMESNRP 632
>gi|312872569|ref|ZP_07732637.1| transcription-repair coupling factor [Lactobacillus iners LEAF
2062A-h1]
gi|311091931|gb|EFQ50307.1| transcription-repair coupling factor [Lactobacillus iners LEAF
2062A-h1]
Length = 1110
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGQKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEASFPYLETPDQIKAIKEIKLDMQKEKP 582
>gi|309803761|ref|ZP_07697847.1| transcription-repair coupling factor [Lactobacillus iners LactinV
11V1-d]
gi|308164170|gb|EFO66431.1| transcription-repair coupling factor [Lactobacillus iners LactinV
11V1-d]
Length = 1110
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEASFPYLETPDQIKAIKEIKLDMQKEKP 582
>gi|311064109|ref|YP_003970834.1| transcription-repair coupling factor [Bifidobacterium bifidum
PRL2010]
gi|310866428|gb|ADP35797.1| Mfd Transcription-repair coupling factor [Bifidobacterium bifidum
PRL2010]
Length = 1199
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 505 PKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGTGANKTTREYLVIEYAPSKRGA 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + I +EA + + AK
Sbjct: 565 PADKLFIPTDQLDLISKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ ++S ++ + + + I+ ++ ++
Sbjct: 611 EIAEDLVKLYSARQRTKGFAFSPDTPWQ---KELEDAFPYQETTDQLTTIDDVKSDMEKP 667
Query: 173 SS 174
Sbjct: 668 VP 669
>gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
Length = 1175
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I E+ G+ ++ I + L VP+ + I
Sbjct: 487 TELKVGDYVVHQNHGIGKYMGIGTLEINGIHKDYMHILYAGGD-KLSVPIEQIDLIQKYV 545
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + K+ S ++++ S P
Sbjct: 546 GSE------------DKEPKVYKLGGNEWTRVKNKVRSSVQDIADDLIKLYAERQSAPGY 593
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + S + + AI I+ ++
Sbjct: 594 GFEKDT---SEQQEFEDMFPYDETPDQLRAITEIKKDMEQNRP 633
>gi|309804680|ref|ZP_07698745.1| transcription-repair coupling factor [Lactobacillus iners LactinV
09V1-c]
gi|308166072|gb|EFO68290.1| transcription-repair coupling factor [Lactobacillus iners LactinV
09V1-c]
Length = 1110
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEASFPYLETPDQIKAIKEIKLDMQKEKP 582
>gi|329850695|ref|ZP_08265540.1| transcription-repair coupling factor [Asticcacaulis biprosthecum
C19]
gi|328841010|gb|EGF90581.1| transcription-repair coupling factor [Asticcacaulis biprosthecum
C19]
Length = 1161
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 48/167 (28%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ HG+G +K V + + L +PV +
Sbjct: 486 AEASSLSPGDLVVHIEHGIGRYEGLKTLSVNDAPHDCL-ELHYAAESKLYLPVENIDLL- 543
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R S++ + R+ W R + K+ E+ L + +
Sbjct: 544 TRYGSDSDSAQ--------LDRLGSASWQARKAKAKQKLR--------EMADGLIQLAAA 587
Query: 129 PEKSYS-ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AI + +L+
Sbjct: 588 RALREGAQIDPPSGLYDEFCAQFPYEETDDQLHAIQDVLEDLAKGQP 634
>gi|55820109|ref|YP_138551.1| transcription repair coupling factor [Streptococcus thermophilus
LMG 18311]
gi|55736094|gb|AAV59736.1| transcription repair coupling factor [Streptococcus thermophilus
LMG 18311]
Length = 1168
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ +D + +P+ + +
Sbjct: 489 ELEKGDYVVHQTHGIGQFKGIETIEIRGVHRDYL-TIQYQDAATISLPIEQIESLSKYVS 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
GK + R Q+ K++ +++ +
Sbjct: 548 V------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADNLLKLYAERSQLKGFA 595
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + E + ++ + +I I+ ++ S
Sbjct: 596 FSPD---DDNQRDFEDEFSYAETVDQLRSIKEIKADMESDKP 634
>gi|225869494|ref|YP_002745441.1| transcription-repair coupling factor [Streptococcus equi subsp.
equi 4047]
gi|225698898|emb|CAW91884.1| putative transcription-repair coupling factor [Streptococcus equi
subsp. equi 4047]
Length = 1164
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ + G+ + +V + + +PV + +
Sbjct: 487 ELSKGDYVVHSVHGIGRFLGIETINIQGVHRD-YVTIQYQQSDRISLPVDQLESLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ ++ ++++ Q
Sbjct: 546 A------------DGKEPKINKLNDGRFQKAKQRVKKQVEDIADDLLKLYAERSQQKGFQ 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I ++ ++ S
Sbjct: 594 FSPDDELQRA---FEEDFAFVETDDQVRSIKEVKKDMESVRP 632
>gi|196250768|ref|ZP_03149455.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
gi|196209718|gb|EDY04490.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
Length = 1177
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G I+ E+ G+ ++ I + L VPV + +
Sbjct: 499 ELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHI-QYQGGDTLYVPVDQMDQVQKYVG 557
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + ++ K+ S ++++ ++ +
Sbjct: 558 SE------------GKEPKIYKLGGTEWKKVKKKVESSVQDIAEDLIKLYAEREASKGYA 605
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + + + +I I+ ++ S+
Sbjct: 606 FSQDTEMQR---EFEAAFPYQETEDQLRSIEEIKRDMESEKP 644
>gi|195977163|ref|YP_002122407.1| transcription-repair coupling factor [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195973868|gb|ACG61394.1| transcription-repair coupling factor [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 1164
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ + G+ + +V + + +PV + +
Sbjct: 487 ELSKGDYVVHSVHGIGRFLGIETINIQGIHRD-YVTIQYQQSDRISLPVEQLESLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ ++ ++++ Q
Sbjct: 546 A------------DGKEPKINKLNDGRFQKAKQRVKKQVEDIADDLLKLYAERSQQKGFQ 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I ++ ++ S
Sbjct: 594 FSPDDELQKA---FEEDFAFVETDDQLRSIKEVKKDMESVRP 632
>gi|138893727|ref|YP_001124180.1| transcription-repair coupling factor [Geobacillus
thermodenitrificans NG80-2]
gi|134265240|gb|ABO65435.1| Transcription-repair coupling factor [Geobacillus
thermodenitrificans NG80-2]
Length = 1177
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G I+ E+ G+ ++ I + L VPV + +
Sbjct: 499 ELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHI-QYQGGDTLYVPVDQMDQVQKYVG 557
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + ++ K+ S ++++ ++ +
Sbjct: 558 SE------------GKEPKIYKLGGTEWKKVKKKVESSVQDIAEDLIKLYAEREASKGYA 605
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + + + +I I+ ++ S+
Sbjct: 606 FSQDTEMQR---EFEAAFPYQETEDQLRSIEEIKRDMESEKP 644
>gi|15896463|ref|NP_349812.1| transcription-repair coupling factor [Clostridium acetobutylicum
ATCC 824]
gi|15026288|gb|AAK81152.1|AE007817_6 Transcription-repair coupling factor, MFD (superfamily II helicase
) [Clostridium acetobutylicum ATCC 824]
gi|325510621|gb|ADZ22257.1| Transcription-repair coupling factor, MFD (superfamily II helicase
) [Clostridium acetobutylicum EA 2018]
Length = 1171
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G++IV+ HG+G IK+ EV G K ++ +++ L VPV +
Sbjct: 495 KIKSFTELKPGDYIVHVNHGIGVFKGIKQLEVQGHKKDYLELSYA-VDDKLYVPVEQLDL 553
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GK + S + K+ E+V+
Sbjct: 554 VQKYIGSE------------GKVPKVNKLGSSEWTKAKNKVRKSINEIAEELVKLYAVRT 601
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ YS+ +++ + E + + AI+ I+ ++ S
Sbjct: 602 TVNGFKYSKDTVWQ---KQFEEEFPYNETQDQLLAIDEIKNDMESGK 645
>gi|325962661|ref|YP_004240567.1| transcription-repair coupling factor Mfd [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468748|gb|ADX72433.1| transcription-repair coupling factor Mfd [Arthrobacter
phenanthrenivorans Sphe3]
Length = 1221
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 9/174 (5%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ G+H+V+ HG+G E+ +++VAG ++ + L+
Sbjct: 527 MPSKRRNAVDPLQLVAGDHVVHEQHGIGKFVELIQRKVAGG------GDGVREYLVLEYA 580
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G V M +K E++R
Sbjct: 581 PSKRGAPGDRLFVPTDQLDQVTRYVGGDTPVLSKMGGADWASTKSKARKAVKEIAGELIR 640
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + V + + IN ++ ++ +
Sbjct: 641 LYSARMASRGHAFGPDTPWQR---ELEEAFPYVETPDQLTTINEVKADMEREIP 691
>gi|309809624|ref|ZP_07703481.1| transcription-repair coupling factor [Lactobacillus iners SPIN
2503V10-D]
gi|308170105|gb|EFO72141.1| transcription-repair coupling factor [Lactobacillus iners SPIN
2503V10-D]
Length = 1110
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEASFPYLETPDQIKAIKEIKLDMQKEKP 582
>gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
Length = 1175
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I E+ G+ ++ I + L VP+ + I
Sbjct: 487 TELKVGDYVVHQNHGIGKYMGIGTLEINGIHKDYMHILYAGGD-KLSVPIEQIDLIQKYV 545
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + K+ S ++++ S P
Sbjct: 546 GSE------------DKEPKVYKLGGNEWTRVKNKVRSSVQDIADDLIKLYAERQSAPGY 593
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + S + + AI I+ ++
Sbjct: 594 GFEKDT---SEQQEFEDMFPYDETPDQLRAITEIKKDMEQNRP 633
>gi|213692705|ref|YP_002323291.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213524166|gb|ACJ52913.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320458861|dbj|BAJ69482.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 1194
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
Length = 1179
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 23/182 (12%), Positives = 60/182 (32%), Gaps = 26/182 (14%)
Query: 3 FQQKRDAMR----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
++K + + G+++V+ HG+G I+ E+ G+ ++ I +
Sbjct: 478 TKKKARRQKLSNAERIKSYSELKVGDYVVHVNHGIGKYLGIETLEINGVHKDYLHI-RYQ 536
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + + SEA K + + K+ S
Sbjct: 537 GSDKLYVPVEQIELVQKYVGSEA------------KEPKIYKLGGNDWKRVKKKVQSSVQ 584
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++ ++S + + + +I+ I+ ++ +
Sbjct: 585 DIADDLIKLYAEREASKGYAFSPDGDMQR---EFEAAFPYQETEDQIRSIHEIKKDMERE 641
Query: 173 SS 174
Sbjct: 642 RP 643
>gi|315653944|ref|ZP_07906860.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
55195]
gi|315488640|gb|EFU78286.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
55195]
Length = 1110
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEASFPYLETPDQIKAIKEIKLDMQKEKP 582
>gi|238927163|ref|ZP_04658923.1| transcription-repair coupling factor [Selenomonas flueggei ATCC
43531]
gi|238884945|gb|EEQ48583.1| transcription-repair coupling factor [Selenomonas flueggei ATCC
43531]
Length = 1097
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+R + G+++V+ +HG+G ++ EVAG+ ++ I L VP
Sbjct: 416 ASAGERIRHFREIAPGDYVVHVSHGIGKYLGVETIEVAGVHRDYLHI-QYGGDDKLFVPT 474
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + +E G A M S AK ++
Sbjct: 475 DQVGLLQKYIGAE------------GSAPRLHRMGSADWARARAKAQKSVEDIADHLLEL 522
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ ++ + + AI I+ ++ S+
Sbjct: 523 YAARRLAKGHAFAPD---DAGQREFEEAFPYQETDDQLRAIAEIKNDMESEKP 572
>gi|154484319|ref|ZP_02026767.1| hypothetical protein EUBVEN_02032 [Eubacterium ventriosum ATCC
27560]
gi|149734796|gb|EDM50713.1| hypothetical protein EUBVEN_02032 [Eubacterium ventriosum ATCC
27560]
Length = 172
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 7/172 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
F GE+IV+ GV + +I ++ G + ++V+ K++ I MR
Sbjct: 1 MFNKGEYIVHGRKGVCKVEDITHLDIDGADKKSLYYVLIPMKNQDSKVFYPTDNDKIPMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
+ VE ++ + + +R +Y I S D + +++ LH+
Sbjct: 61 TIHTKDQVEEIVEHINEIEPIWIDNERQREYKYKEVIGSCDCKQLIGIIKTLHKRGRSRL 120
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
+ +Y + + A + E + I +P+ I N++ E
Sbjct: 121 AHGKKITYVDEKYLREAKEVLYDEFSLALDIDKPQVEKYIINNINESDKAAE 172
>gi|116513512|ref|YP_812418.1| transcription-repair coupling factor [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116092827|gb|ABJ57980.1| transcription-repair coupling factor [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 1158
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 58/180 (32%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ ++ + + G+++V+ HG+G I+ E G K + ++ +
Sbjct: 466 SKKRIKTLENAQRLRSYTELKPGDYVVHVNHGIGRFEGIQTLETDGKKRD-YITITYQKG 524
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VP + + SE GK + + ++ +
Sbjct: 525 DQLFVPADQLSLVQKYVASE------------GKQPHVNKLGGSEWAKTKKRVAARVEDI 572
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + +++ ++S ++A + + A I+ ++
Sbjct: 573 ADDLIELYAKREAEKGFAFSPDGSDQAA---FEAAFPYEPTPDQLRATAEIKADMEKAKP 629
>gi|308050222|ref|YP_003913788.1| transcription-repair coupling factor [Ferrimonas balearica DSM
9799]
gi|307632412|gb|ADN76714.1| transcription-repair coupling factor [Ferrimonas balearica DSM
9799]
Length = 1156
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E G++ EF + L VPV I
Sbjct: 480 ELKVGQPVVHLKHGIGRYLGLETLEAGGLESEFL-MLEYGGGSKLYVPVNALHMISRYSG 538
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ + S + K AE++ R +++P
Sbjct: 539 A------------DEESVTLNKLGSEAWDKARRKAAEKVRDVAAELLDIYARREAKPGHG 586
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + E R ++ + AI + +++ +
Sbjct: 587 FP---MDELEYQRFSAAFPFEETVDQAAAIGAVLRDMTKPQA 625
>gi|21673485|ref|NP_661550.1| transcription-repair coupling factor [Chlorobium tepidum TLS]
gi|21646591|gb|AAM71892.1| transcription-repair coupling factor [Chlorobium tepidum TLS]
Length = 1113
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 65/176 (36%), Gaps = 21/176 (11%)
Query: 4 QQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ Q + G+++V+ +G+G ++ +V + E V+ + L
Sbjct: 409 RKRKVRGISLKELQRLKVGDYVVHEDYGIGVFRSLETIQVGDSEQEC-VLVEYEGGDQLY 467
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V V + SE + +++ + WS + + K+ A++
Sbjct: 468 VNVQNINLLSKYTASEGS--------LPNLSKLGSSKWSAKKERVRKKLR----DIAAKL 515
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + P ++ +++ + + +AI ++ ++ S S
Sbjct: 516 IRVYAKRKMTPGFAFGPDSIFQR---EFEASFMFEETPDQLKAIQEVKKDMQSPSP 568
>gi|269957468|ref|YP_003327257.1| transcription-repair coupling factor [Xylanimonas cellulosilytica
DSM 15894]
gi|269306149|gb|ACZ31699.1| transcription-repair coupling factor [Xylanimonas cellulosilytica
DSM 15894]
Length = 1218
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 61/178 (34%), Gaps = 16/178 (8%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKMC 56
+ +++ R G+++V+ HGVG E+ ++ + E+ V
Sbjct: 518 LPSRRRNVVDPLQLRAGDYVVHEQHGVGRFVEMVQRTLGAGSNAATREYLV--------- 568
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L+ K G R +++ K V G+A M + AK
Sbjct: 569 LEYASSKRGQPGDRLFVPMDQLDQVTKYVGGEAPSLSKMGGADWKNTKAKARKHVKEIAG 628
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E++R + ++ ++ + A + + + I+ ++ ++ +
Sbjct: 629 ELIRLYSARMATQGHAFGADTPWQR---ELEDAFAYIETPDQLSTIDEVKADMEKPTP 683
>gi|317128335|ref|YP_004094617.1| transcriptional regulator, CarD family [Bacillus cellulosilyticus
DSM 2522]
gi|315473283|gb|ADU29886.1| transcriptional regulator, CarD family [Bacillus cellulosilyticus
DSM 2522]
Length = 163
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+H+VYP HG GTI +I+E+++ G KL ++V+ F + + L +P + G+RK+
Sbjct: 1 MFNVGDHVVYPYHGAGTIKDIEEKDILGEKLNYYVVFFPLNHVTLMLPENRIKSSGLRKI 60
Query: 73 SEAHFVERALKLV-RGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE- 130
+ +E + + + K+ ++E + + SG +I A V+ +L + +
Sbjct: 61 IQPKQIEEVVTAMQPTEYASKKEAARPYSKENETLLKSGSIIDAAMVIANLTSKEGERTN 120
Query: 131 -KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
+R+ + A +V E+ V +ISE EA I N
Sbjct: 121 GLHMEDRKNLDRAKQFIVSELMLVKNISEEEAYQFINEN 159
>gi|54026849|ref|YP_121091.1| putative transcription-repair coupling factor [Nocardia farcinica
IFM 10152]
gi|54018357|dbj|BAD59727.1| putative transcription-repair coupling factor [Nocardia farcinica
IFM 10152]
Length = 1205
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 58/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V ++
Sbjct: 495 LPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMIERTVGGARREYLV---------IEYA 545
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ + K E+V+
Sbjct: 546 PSKRGQPGDRLFVPMESLDQLSRYVGGEMPSLSKLGGSDWANTKRKARKAVREIAGELVQ 605
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + A ++ + AI ++ ++
Sbjct: 606 LYAARQAAPGHAFGPDTPWQKEME---DAFAFTETVDQMTAIAEVKADMEKPVP 656
>gi|330861382|emb|CBX71615.1| transcription-repair-coupling factor [Yersinia enterocolitica
W22703]
Length = 740
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I
Sbjct: 295 ELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLISRYSG 353
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A ++ + +V +L +Q
Sbjct: 354 GADE--NAPLHKLGGDA--------------WSRARQKAAEKVRDVAAELLDIYAQRAAK 397
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + + +AIN + ++ +
Sbjct: 398 SGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLA 440
>gi|325695766|gb|EGD37665.1| transcription-repair coupling factor [Streptococcus sanguinis
SK150]
Length = 1167
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDSRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|325125148|gb|ADY84478.1| Transcriptional repair coupling factor [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 1163
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 58/180 (32%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ ++ + + G+++V+ HG+G I+ E G K + ++ +
Sbjct: 466 SKKRIKTLENAQRLRSYTELKPGDYVVHVNHGIGRFEGIQTLETDGKKRD-YITITYQKG 524
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VP + + SE GK + + ++ +
Sbjct: 525 DQLFVPADQLSLVQKYVASE------------GKQPHVNKLGGSEWAKTKKRVAARVEDI 572
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + +++ ++S ++A + + A I+ ++
Sbjct: 573 ADDLIELYAKREAEKGFAFSPDGSDQAA---FEAAFPYEPTPDQLRATAEIKADMEKAKP 629
>gi|320333642|ref|YP_004170353.1| CarD family transcriptional regulator [Deinococcus maricopensis DSM
21211]
gi|319754931|gb|ADV66688.1| transcriptional regulator, CarD family [Deinococcus maricopensis
DSM 21211]
Length = 165
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 60/139 (43%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ F G+ +V P +G+G ++ + VAG ++ + F VPV + GMR
Sbjct: 2 KKFSKGDRVVLPPYGIGVVSGTCTRPVAGTPHAYYQVEFPNTTSRAFVPVDAPMTAGMRP 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ L+ ++ W+ R ++ + SGD +A + +L R + +
Sbjct: 62 ALTGEDMPALLERLQEGQLNLPRQWAARHRKVTEILVSGDPFELATLACELRRWNVERGL 121
Query: 132 SYSERQLYESALNRMVREI 150
+RQ Y AL + +E+
Sbjct: 122 PDLDRQAYRRALKLLNQEV 140
>gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus
JCSC1435]
gi|123748600|sp|Q4L3G0|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus
JCSC1435]
Length = 1169
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HGVG ++ EV + ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPKLNKLGGSEWKKTKAKVQQSVEDIADELIALYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E +SA + + + ++I+ I+ ++ +
Sbjct: 596 MSVGYQYGEDTAEQSA---FEMDFPYELTPDQAKSIDEIKGDMERERP 640
>gi|257455867|ref|ZP_05621086.1| transcription-repair coupling factor [Enhydrobacter aerosaccus
SK60]
gi|257446715|gb|EEV21739.1| transcription-repair coupling factor [Enhydrobacter aerosaccus
SK60]
Length = 1182
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 53/182 (29%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGF--------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ + F G+ +V+ G+G + E+ EF + +
Sbjct: 491 TRRRRQSDVSDEFLVKSVSELNIGDPVVHIDFGIGRYQGLITLEIDRQLQEFIHLTYAD- 549
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VPV I + L + K + L
Sbjct: 550 DASVYVPVANLQLISRY--AGGDSATAPLHTIGSGK--------------WDKAKAKALS 593
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + + + + A + + AI ++ ++
Sbjct: 594 QIHDVAAELLNVQARRDAKVGINFPIDQIQYDLFASQFAFEETPDQANAIEAVKFDMKQN 653
Query: 173 SS 174
Sbjct: 654 KP 655
>gi|55821999|ref|YP_140440.1| transcription repair coupling factor [Streptococcus thermophilus
CNRZ1066]
gi|55737984|gb|AAV61625.1| transcription repair coupling factor [Streptococcus thermophilus
CNRZ1066]
Length = 1168
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ +D + +P+ + +
Sbjct: 489 ELEKGDYVVHQTHGIGQFKGIETIEIRGVHRDYL-TIQYQDAATISLPIEQIESLSKYVS 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
GK + R Q+ K++ +++ +
Sbjct: 548 V------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADNLLKLYAERSQLKGFA 595
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + E + ++ + +I I+ ++ S
Sbjct: 596 FSPD---DDNQRDFEDEFSYAETVDQLRSIKEIKADMESDKP 634
>gi|331005187|ref|ZP_08328584.1| Transcription-repair coupling factor [gamma proteobacterium
IMCC1989]
gi|330421011|gb|EGG95280.1| Transcription-repair coupling factor [gamma proteobacterium
IMCC1989]
Length = 1163
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/184 (11%), Positives = 55/184 (29%), Gaps = 27/184 (14%)
Query: 3 FQQKRDAM---------RQGFRTGEHIVYPAHGVGTITEIKEQEVAG---MKLEFFVIAF 50
++++ + + G +V+ HGVG ++ + + F++
Sbjct: 471 RRRRKTSQDISDQVIKNLTELKIGAPVVHLDHGVGRYQGLETIVIGDGAEQETNEFLMLE 530
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ L VPV I + + S ++ K
Sbjct: 531 YANDAKLYVPVTHLHLISRYSGAAEGLAP------------LHKLGSDHWRKAKEKAVKE 578
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
AE++ R D++ ++ ++ + + + AI+ + ++
Sbjct: 579 VRDVAAELLDIYARRDARVGFAFPYNKM---DYQQFSSSFPFEETPDQEAAIHSVRNDML 635
Query: 171 SKSS 174
S
Sbjct: 636 SDKP 639
>gi|148262223|ref|YP_001228929.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
gi|146395723|gb|ABQ24356.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
Length = 1159
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 58/173 (33%), Gaps = 17/173 (9%)
Query: 3 FQQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
++K+ + G+++V+ GVG ++ M+ +F ++ + L +PV
Sbjct: 486 ARKKQLLTSLAELKPGDYMVHIDFGVGIYRGLQHLTFDRMEGDFLLLEYAGAD-KLYLPV 544
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + +E G + ++ A+ + E+++
Sbjct: 545 DRINLVQRYVGAE------------GVEPHVDKLGGAGWEKTKARARAAIQEMAGELLKI 592
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S + + A + + AI + ++ SK
Sbjct: 593 YAARQVEEGHAFSPQ---DELYQEFEASFAFEETPDQQAAIEDVLHDMESKRP 642
>gi|310287260|ref|YP_003938518.1| transcription-repair coupling factor (superfamily II helicase)
[Bifidobacterium bifidum S17]
gi|309251196|gb|ADO52944.1| Transcription-repair coupling factor (superfamily II helicase)
[Bifidobacterium bifidum S17]
Length = 1199
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 505 PKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGTGANKTTREYLVIEYAPSKRGA 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + I +EA + + AK
Sbjct: 565 PADKLFIPTDQLDLISKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ ++S ++ + + + I+ ++ ++
Sbjct: 611 EIAEDLVKLYSARQRTKGFAFSPDTPWQ---KELEDAFPYQETTDQLTTIDDVKSDMEKP 667
Query: 173 SS 174
Sbjct: 668 VP 669
>gi|226322661|ref|ZP_03798179.1| hypothetical protein COPCOM_00433 [Coprococcus comes ATCC 27758]
gi|225208998|gb|EEG91352.1| hypothetical protein COPCOM_00433 [Coprococcus comes ATCC 27758]
Length = 173
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 63/170 (37%), Gaps = 7/170 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ G+ IVY G+ +TEI ++ G+ + ++++ ++K I MR
Sbjct: 1 MYEVGDLIVYGRTGICEVTEITTLKMDGVPKDKLYYILRPVREKRGKVFTPVDNEKIVMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT----- 125
++ E ++ + + +R ++Y + S +++ L++
Sbjct: 61 RVISKEEAEELIREIPQIEGLWIGSEKQREEKYKECMKSCKCAEWVRIIKTLYQRKMSRL 120
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
+ + ++ + A + E++ I E + I ++
Sbjct: 121 KQGKKITATDERYLRMAEGNLYSELSIALGIPESGMEDYIMNQINETEEP 170
>gi|189350744|ref|YP_001946372.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
17616]
gi|189334766|dbj|BAG43836.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
17616]
Length = 1185
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 506 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVAQLHVISR 564
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 565 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 608
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 609 AAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 654
>gi|115351983|ref|YP_773822.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD]
gi|115281971|gb|ABI87488.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD]
Length = 1185
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 506 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVAQLHVISR 564
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 565 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 608
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 609 AAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 654
>gi|259416898|ref|ZP_05740818.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B]
gi|259348337|gb|EEW60114.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B]
Length = 1151
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + ++ L
Sbjct: 459 PKRRRKAENFLTEAQSLSPGDLVVHVDHGIGRYIGLEVVTAAGAAHECLLLEYA-EESKL 517
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q A++
Sbjct: 518 YLPVENIELLSKY-----GHDEGLLDKLGGGA----------WQAKKARLKERIREMADR 562
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + A + + AI + +L+S
Sbjct: 563 LIRIAAERALRKAPAM---DPPPHAWEEFSARFPYQETDDQLRAIEDVMSDLNSGQP 616
>gi|295676504|ref|YP_003605028.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002]
gi|295436347|gb|ADG15517.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002]
Length = 1159
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/181 (10%), Positives = 50/181 (27%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 463 RRRQEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAG-D 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 522 SKLYVPVAQLHVISRYSGADPESAP--LHSLGSGQ--------------WEKAKRKAAQQ 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ E + + + AI + +++
Sbjct: 566 IRDTAAELLNLYARRAAREGHAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTGGK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|283138935|gb|ADB12538.1| transcription-repair coupling factor [uncultured bacterium 9F08]
Length = 1155
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G +V+ HGVG +++ V + EF + + L VPV I
Sbjct: 486 ELQPGAAVVHEDHGVGRYLGLQKLTVGDSEAEFLTLEYAGGD-KLYVPVASLHLISRYSG 544
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + + L + K I +V +L ++ E
Sbjct: 545 ASSEHIP--LHKLGSGQ--------------WEKAKRKAGEKIRDVAAELLEIYARREAR 588
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R + A + + +AI+ + ++ ++
Sbjct: 589 QGHRYPVDEAQYGAFAAAFPFEETPDQQDAIDAVLADMRAEQP 631
>gi|167586917|ref|ZP_02379305.1| transcription-repair coupling factor [Burkholderia ubonensis Bu]
Length = 1158
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 580 AAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++V+ HG+G ++ E+ G ++ I ++ L VPV + +
Sbjct: 498 SELNVGDYVVHVNHGIGRYLGMETLEINGNHKDYIHIKYEGSD-KLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + ++ K+ S ++++ ++
Sbjct: 557 GSE------------GKEPKVYKLGGNDWKKVKRKVESSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ I+ ++ +
Sbjct: 605 AFSPDGDLQR---EFETAFPYQETEDQLRSVQEIKKDMEHERP 644
>gi|255659238|ref|ZP_05404647.1| transcription-repair coupling factor [Mitsuokella multacida DSM
20544]
gi|260848692|gb|EEX68699.1| transcription-repair coupling factor [Mitsuokella multacida DSM
20544]
Length = 1129
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/168 (10%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + + + G+++V+ +HG+G ++ +V G+ ++ I + L VP +
Sbjct: 422 KISHFRDIKPGDYVVHESHGIGKYLGVETLDVGGIHKDYLHIQYAG-DDKLFVPTDQVGL 480
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE M + A+ +++ +
Sbjct: 481 LQKYIGSEGDV------------PRLHRMGGTEWVKAKARAKKSVEDIAQKLIEIYAKRK 528
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +++ + + AI I+ ++ +
Sbjct: 529 DAKGHAFPPD---DASQREFEDAFPYEETEDQLRAIAEIKADMEREKP 573
>gi|254511931|ref|ZP_05123998.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
KLH11]
gi|221535642|gb|EEE38630.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
KLH11]
Length = 1151
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + ++ L
Sbjct: 460 PKKRRKAENFLTETQSLSPGDLVVHVDHGIGRYQGMEVVTAAGAAHECLLLEYA-EQSKL 518
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+ +
Sbjct: 519 YLPVENIELLSKY-----GHDEGLLDRLGGGA----------WQAKKAKLKERIREMADK 563
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + + AI+ + ++ S +
Sbjct: 564 LIRIAAERALRKAPIM---DPPPHAWDEFSARFPYQETDDQLRAISEVMEDMHSGAP 617
>gi|253576880|ref|ZP_04854205.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
786 str. D14]
gi|251843747|gb|EES71770.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
786 str. D14]
Length = 1177
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I EV G+ ++ I + L VP+ + I
Sbjct: 490 TELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHILYAGGD-KLSVPIEQIDMIQKYV 548
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + K+ S ++++ + P
Sbjct: 549 GSE------------DKEPKIYKLGGNEWNRVKNKVRSSVQNIADDLIKLYAERQAAPGY 596
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + AI I+ ++
Sbjct: 597 AFEKDTP---EQQEFEAMFPYEETPDQLRAIEEIKRDMEQSRP 636
>gi|254252138|ref|ZP_04945456.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158]
gi|124894747|gb|EAY68627.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158]
Length = 1164
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 485 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVAQLHVISR 543
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 544 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 587
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 588 AAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 633
>gi|99081190|ref|YP_613344.1| transcription-repair coupling factor [Ruegeria sp. TM1040]
gi|99037470|gb|ABF64082.1| transcription-repair coupling factor [Ruegeria sp. TM1040]
Length = 1149
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + ++ L
Sbjct: 459 PKRRRKAENFLTEAQSLSPGDLVVHVDHGIGRYIGLEVVTAAGAAHECLLLEYA-EESKL 517
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q A++
Sbjct: 518 YLPVENIELLSKY-----GHDEGLLDKLGGGA----------WQAKKARLKERIREMADR 562
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + A + + AI + +L+S
Sbjct: 563 LIRIAAERALRKAPAM---DPPPHAWEEFSARFPYQETDDQLRAIEDVISDLNSGQP 616
>gi|119025662|ref|YP_909507.1| transcription-repair coupling factor [Bifidobacterium adolescentis
ATCC 15703]
gi|118765246|dbj|BAF39425.1| transcription-repair coupling factor [Bifidobacterium adolescentis
ATCC 15703]
Length = 1188
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/182 (9%), Positives = 58/182 (31%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKL----EFFVIAFD-----K 52
++++ +TG+++V+ HG+G E++++ + + E+ VI +
Sbjct: 495 PKRRRKAIDLMELKTGDYVVHEQHGIGRFVEMRQRTIGKGENQTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +E + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAETPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ ++S+ ++ + + + I+ ++ ++
Sbjct: 601 EIAEDLVKLYSARQRTKGYAFSKDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 IP 659
>gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
Length = 1176
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++V+ HG+G ++ E+ G ++ I ++ L VPV + +
Sbjct: 498 SELNVGDYVVHVNHGIGRYLGMETLEINGNHKDYIHIKYEGSD-KLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + ++ K+ S ++++ ++
Sbjct: 557 GSE------------GKEPKVYKLGGNDWKKVKRKVESSVQDIADDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ I+ ++ +
Sbjct: 605 AFSPDGDLQR---EFETAFPYQETEDQLRSVQEIKKDMEHERP 644
>gi|171058689|ref|YP_001791038.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6]
gi|170776134|gb|ACB34273.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6]
Length = 1155
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 49/182 (26%), Gaps = 27/182 (14%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
++K++ + G+ +V+ HG+G + ++ EF + +
Sbjct: 458 RRRKQEQTSDVEALIKDLSELKVGDPVVHANHGIGRYQGLVSIDLGEGPTEFLFLEYADQ 517
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L VPV + I A E L + K
Sbjct: 518 -ATLYVPVSQLQLISRYTGVSAE--EAPLHKLGSGQ--------------WEKAKRKAAE 560
Query: 114 AIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + +L ++ + + + AI+ + ++ S
Sbjct: 561 QVRDAAAELLNLYARRASREGFAFRFSPQDYEAFAASFGFEETADQNAAIHAVIQDMISP 620
Query: 173 SS 174
Sbjct: 621 RP 622
>gi|313680694|ref|YP_004058433.1| CarD family transcriptional regulator [Oceanithermus profundus DSM
14977]
gi|313153409|gb|ADR37260.1| transcriptional regulator, CarD family [Oceanithermus profundus DSM
14977]
Length = 167
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
GF G+ +VYPA G G I EI E+EV G + ++VI + + VPV KA +G+
Sbjct: 2 AAMGFNVGDPVVYPAQGGGYIREIAEREVMGERNTYYVIELLRKPGTIMVPVEKAERLGL 61
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
R + ++ + G+AR + W R +E ++ D + +A ++ LHR
Sbjct: 62 RPPLAGADRDALVRAL-GEARDLASGWPARQREIGRALSESDPLELARMLASLHRRHQLR 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
S +E Q Y + + E+A + A + L++
Sbjct: 121 PLSGTEHQQYRELVGILSEELALAENGDLQAAEAYLTERLNA 162
>gi|291456465|ref|ZP_06595855.1| transcription-repair coupling factor [Bifidobacterium breve DSM
20213]
gi|291381742|gb|EFE89260.1| transcription-repair coupling factor [Bifidobacterium breve DSM
20213]
Length = 1196
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 504 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 563
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 564 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 609
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 610 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 666
Query: 173 SS 174
Sbjct: 667 VP 668
>gi|313635134|gb|EFS01462.1| transcription-repair coupling factor [Listeria seeligeri FSL
N1-067]
Length = 746
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 67 SELKVGDYVVHINHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 125
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 126 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 173
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + +I I+ ++
Sbjct: 174 AFSPDEEMQR---EFEDAFPYQETDDQLRSIAEIKKDMERPRP 213
>gi|229817916|ref|ZP_04448198.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
20098]
gi|229784520|gb|EEP20634.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
20098]
Length = 1198
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 58/182 (31%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ +TG+++V+ HG+G E++++ V E+ VI +
Sbjct: 504 PKRRRKAIDLMELKTGDYVVHEQHGIGRFIEMRQRTVGTGENKATREYLVIEYAPSKRGA 563
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 564 PADKLFIPTDQLDLVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVR 609
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ P ++S ++ + + + I+ ++ ++
Sbjct: 610 EIADDLVKLYSARQRTPGFAFSADTPWQ---KELEDAFPYQETADQLTTIDDVKADMEKP 666
Query: 173 SS 174
Sbjct: 667 RP 668
>gi|119478459|ref|ZP_01618444.1| transcription-repair coupling protein Mfd [marine gamma
proteobacterium HTCC2143]
gi|119448545|gb|EAW29792.1| transcription-repair coupling protein Mfd [marine gamma
proteobacterium HTCC2143]
Length = 1152
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 24/181 (13%)
Query: 2 TFQQKRDAMRQG--------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ R G IV+ HGVG +++ + G EF D
Sbjct: 459 TRRRRKSKDNSEAIIKNLTELRIGAPIVHIDHGVGRYRGLEDIGIEGQDTEFL-TLEYAD 517
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L VPV I ++ R+ W + ++ KI
Sbjct: 518 GAKLYVPVSSLHLISRYSGADEETAP--------LHRLGSDQWQKAKRKAAEKIR----- 564
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+A + D++ + E + + + + + AI + +L S +
Sbjct: 565 DVAAELLDIYARRAARPGQSLE--IPDQSYEAFSAGFPFEETPDQESAIKAVVADLQSDA 622
Query: 174 S 174
+
Sbjct: 623 A 623
>gi|86608683|ref|YP_477445.1| transcription-repair coupling factor [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557225|gb|ABD02182.1| transcription-repair coupling factor [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1158
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/176 (11%), Positives = 59/176 (33%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ + RQ + G+ +V+ AHG+G ++ + G E+ VI + L+
Sbjct: 469 RKRRQASSRQVDPNLLKPGDFVVHKAHGIGQFLRLETLTIGGETREYLVIQY--SDGLLR 526
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + S M ++ K+ ++
Sbjct: 527 VAADQVNSLSRYRASG------------DGPPALHKMSGSTWEKTKQKVKKSLRKVAFDL 574
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Q ++ ++ + + + A+ I+ ++ S
Sbjct: 575 LQLYAKRAEQEGYAFPPDSPWQ---QELEDSFPYPLTPDQLRAVQEIKRDMESPRP 627
>gi|295689522|ref|YP_003593215.1| transcription-repair coupling factor [Caulobacter segnis ATCC
21756]
gi|295431425|gb|ADG10597.1| transcription-repair coupling factor [Caulobacter segnis ATCC
21756]
Length = 1155
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 22/178 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R A G+ +V+ HG+G +K +V G + + L
Sbjct: 467 PRKKRRAANFLAEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCL-DLLYGGEAKL 525
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + ++A V+ ++ W R + ++
Sbjct: 526 YLPVENIDLLTRYGAADADNVQ--------LDKLGGAAWQGRKAKAKERLR--------V 569
Query: 118 VVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L + + + + E + + + AI+ + +LSS
Sbjct: 570 MAEGLIQIAAARQLKHVEETDPPHGVFDEFCARFPYEETDDQLSAIHDVLEDLSSGKP 627
>gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC
7942]
gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC
7942]
Length = 1153
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + R + G+++V+ +HG+G +++ ++G E+ V+ + L+V
Sbjct: 468 KRRRAASKQVDRDRLKPGDYVVHRSHGIGRFVKLESLSLSGEMREYLVLQYA--DGLLRV 525
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + + G+ +M S+ ++ AK +++
Sbjct: 526 AADQMGSLSRYRG------------MGGERPELSSMTSKAWEKTKAKARKAVRKVAVDLL 573
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Q +Y Q ++ + + + +A+ ++ ++ S
Sbjct: 574 KLYAQRSQQEGHAYPPDQPWQ---QELEESFPYQPTADQLKAVEAVKRDMESPQP 625
>gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC
6301]
gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC
6301]
Length = 1153
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + R + G+++V+ +HG+G +++ ++G E+ V+ + L+V
Sbjct: 468 KRRRAASKQVDRDRLKPGDYVVHRSHGIGRFVKLESLSLSGEMREYLVLQYA--DGLLRV 525
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + + G+ +M S+ ++ AK +++
Sbjct: 526 AADQMGSLSRYRG------------MGGERPELSSMTSKAWEKTKAKARKAVRKVAVDLL 573
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Q +Y Q ++ + + + +A+ ++ ++ S
Sbjct: 574 KLYAQRSQQEGHAYPPDQPWQ---QELEESFPYQPTADQLKAVEAVKRDMESPQP 625
>gi|134295974|ref|YP_001119709.1| transcription-repair coupling factor [Burkholderia vietnamiensis
G4]
gi|134139131|gb|ABO54874.1| transcription-repair coupling factor [Burkholderia vietnamiensis
G4]
Length = 1151
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 580 AAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|259501958|ref|ZP_05744860.1| transcription-repair coupling factor [Lactobacillus antri DSM
16041]
gi|259170135|gb|EEW54630.1| transcription-repair coupling factor [Lactobacillus antri DSM
16041]
Length = 1185
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G + IK EV G+ ++ +I ++ + VPV + +
Sbjct: 504 TDLKPGDYVVHVNHGIGIFSGIKTMEVDGVHQDYMIIN-YRNNAQIFVPVTQLNLVQKYV 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E K + + ++ S E+V + ++
Sbjct: 563 SAE------------SKTPRINRLGGNEWAKTKRRVASKVEDIADELVDLYAKREAAKGY 610
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + +I ++ ++
Sbjct: 611 AFPADDYLQA---QFDANFPYTETRDQLRSIKEVKRDMEKPRP 650
>gi|327467732|gb|EGF13226.1| transcription-repair coupling factor [Streptococcus sanguinis
SK330]
Length = 1167
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSTD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|312871549|ref|ZP_07731642.1| transcription-repair coupling factor [Lactobacillus iners LEAF
3008A-a]
gi|311092944|gb|EFQ51295.1| transcription-repair coupling factor [Lactobacillus iners LEAF
3008A-a]
Length = 1110
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEASFPYLETPDQIKAIREIKLDMQKEKP 582
>gi|171320492|ref|ZP_02909522.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5]
gi|171094277|gb|EDT39354.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5]
Length = 1156
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 580 AAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|300812086|ref|ZP_07092534.1| transcription-repair coupling factor [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496925|gb|EFK31999.1| transcription-repair coupling factor [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 1158
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 58/180 (32%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ ++ + + G+++V+ HG+G I+ E G K + ++ +
Sbjct: 466 SKKRIKTLENAQRLRSYTELKPGDYVVHVNHGIGRFEGIQTLETDGKKRD-YITITYQKG 524
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VP + + SE GK + + ++ +
Sbjct: 525 DQLFVPADQLSLVQKYVASE------------GKQPHVNKLGGSEWAKTKKRVAARVEDI 572
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + +++ ++S ++A + + A I+ ++
Sbjct: 573 ADDLIDLYAKREAEKGFAFSPDGSDQAA---FEAAFPYEPTPDQLRATAEIKADMEKAKP 629
>gi|188590479|ref|YP_001920384.1| transcriptional regulator, CarD family [Clostridium botulinum E3
str. Alaska E43]
gi|188500760|gb|ACD53896.1| transcriptional regulator, CarD family [Clostridium botulinum E3
str. Alaska E43]
Length = 160
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP G+G + I+E+ G K ++ +I K+ + + +P+ + + +R +
Sbjct: 1 MFNVGDKVVYPMQGIGIVQRIEEKLFCGKKKKYCIIQMLKNNLEIMIPIDRLPNSKLRMI 60
Query: 73 SEAHFVERALKLVRGK--ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
++ + +E L + +R + KI SG L +V +L +
Sbjct: 61 NDINTLEDILNNIGDTSNPEEADLPSKQRYEINLNKIKSGLLEDSLDVFYNLTLINKNKA 120
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +E+Q+ +A ++ EI + ISE EA +++ +++
Sbjct: 121 LNSTEKQILNTAQKFLIDEIRVIKDISENEATKILKSSIN 160
>gi|161524500|ref|YP_001579512.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
17616]
gi|221215034|ref|ZP_03588001.1| transcription-repair coupling factor [Burkholderia multivorans
CGD1]
gi|160341929|gb|ABX15015.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
17616]
gi|221164970|gb|EED97449.1| transcription-repair coupling factor [Burkholderia multivorans
CGD1]
Length = 1156
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 580 AAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|16126087|ref|NP_420651.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
gi|221234857|ref|YP_002517293.1| transcription-repair coupling factor [Caulobacter crescentus
NA1000]
gi|13423283|gb|AAK23819.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
gi|220964029|gb|ACL95385.1| transcription-repair coupling factor [Caulobacter crescentus
NA1000]
Length = 1155
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 22/178 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R A G+ +V+ HG+G +K +V G + + L
Sbjct: 467 PRKKRRAANFLAEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCL-DLLYGGEAKL 525
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + ++A V+ ++ W R + ++
Sbjct: 526 YLPVENIDLLTRYGAADAENVQ--------LDKLGGAAWQGRKAKAKERLR--------V 569
Query: 118 VVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L + + + E + + + AI+ + +LSS
Sbjct: 570 MAEGLIQIAAARQLKTVEETDPPSGVFDEFCARFPYEETDDQLSAIHDVLEDLSSGKP 627
>gi|103487138|ref|YP_616699.1| transcription-repair coupling factor [Sphingopyxis alaskensis
RB2256]
gi|98977215|gb|ABF53366.1| transcription-repair coupling factor [Sphingopyxis alaskensis
RB2256]
Length = 1194
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 22/176 (12%)
Query: 3 FQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K A G+ +V+ HG+G + V + V L
Sbjct: 508 KRRKSADAFLAELATLSVGDLVVHLDHGIGRYEGLTSIPVGNSPHDC-VALTYAGGDKLY 566
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VPV + AL + G+A W RR + I E+
Sbjct: 567 VPVENLDVLSRY---GGESDGVALDKLGGEA------WQRRKARMKER--------IREI 609
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+L T +Q E ++A + + AI + +++S
Sbjct: 610 AGELLATAAQRALRPGEILTQDAAYPAFADRFPYQETDDQDRAIGDVLADMASGRP 665
>gi|238795991|ref|ZP_04639503.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC
43969]
gi|238720196|gb|EEQ12000.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC
43969]
Length = 1148
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 29/184 (15%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G+A ++
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADE--NAPLHKLGGEA--------------WSRARQKA 557
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +V +L +Q + + + + + +AIN + ++
Sbjct: 558 AEKVRDVAAELLDIYAQRAAKSGFKFKLDREQYQLFCQSFPFETTPDQEQAINAVLSDMC 617
Query: 171 SKSS 174
+
Sbjct: 618 QPLA 621
>gi|325912458|ref|ZP_08174853.1| transcription-repair coupling factor [Lactobacillus iners UPII
143-D]
gi|325475800|gb|EGC78971.1| transcription-repair coupling factor [Lactobacillus iners UPII
143-D]
Length = 1110
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEASFPYLETPDQIKAIREIKLDMQKEKP 582
>gi|227546191|ref|ZP_03976240.1| transcription-repair coupling factor helicase [Bifidobacterium
longum subsp. infantis ATCC 55813]
gi|227213172|gb|EEI81044.1| transcription-repair coupling factor helicase [Bifidobacterium
longum subsp. infantis ATCC 55813]
Length = 1194
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|220912069|ref|YP_002487378.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
A6]
gi|219858947|gb|ACL39289.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
A6]
Length = 1220
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 9/174 (5%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M +++ G+H+V+ HG+G E+ +++VAG ++ + L+
Sbjct: 526 MPSKRRNAVDPLQLVAGDHVVHEQHGIGRFVELLQRKVAGGS------DGVREYLVLEYA 579
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G V M +K E++R
Sbjct: 580 PSKRGAPGDRLFVPTDQLDQVTRYVGGDTPVLSKMGGADWASTKSKARKAVKEIAGELIR 639
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + V + + IN ++ ++ +
Sbjct: 640 LYSARMASRGHAFGPDTPWQR---ELEEAFPYVETPDQLTTINEVKADMEREIP 690
>gi|291517134|emb|CBK70750.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
longum F8]
Length = 1194
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|313123080|ref|YP_004033339.1| transcription-repair coupling factor (superfamily ii helicase)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312279643|gb|ADQ60362.1| Transcription-repair coupling factor (Superfamily II helicase)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 1158
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 58/180 (32%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ ++ + + G+++V+ HG+G I+ E G K + ++ +
Sbjct: 466 SKKRIKTLENAQRLRSYTELKPGDYVVHVNHGIGRFEGIQTLETDGKKRD-YITITYQKG 524
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VP + + SE GK + + ++ +
Sbjct: 525 DQLFVPADQLSLVQKYVASE------------GKQPHVNKLGGSEWAKTKKRVAARVEDI 572
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + +++ ++S ++A + + A I+ ++
Sbjct: 573 ADDLIDLYAKREAEKGFAFSPDGSDQAA---FEAAFPYEPTPDQLRATAEIKADMEKAKP 629
>gi|254465368|ref|ZP_05078779.1| transcription-repair coupling factor [Rhodobacterales bacterium
Y4I]
gi|206686276|gb|EDZ46758.1| transcription-repair coupling factor [Rhodobacterales bacterium
Y4I]
Length = 1151
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + + L
Sbjct: 459 PKKRRKAENFLTETQSLTPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYA-EASKL 517
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+ +
Sbjct: 518 YLPVENIELLSKY-----GHEEGLLDRLGGGA----------WQAKKAKLKERIREMADK 562
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI + +L S
Sbjct: 563 LIRIAAERALRKAPVM---DPPPHAWEEFSARFPYQETDDQLRAIEDVMEDLHSGQP 616
>gi|172060905|ref|YP_001808557.1| transcription-repair coupling factor [Burkholderia ambifaria
MC40-6]
gi|171993422|gb|ACB64341.1| transcription-repair coupling factor [Burkholderia ambifaria
MC40-6]
Length = 1156
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 580 AAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|325684691|gb|EGD26845.1| transcription-repair coupling factor [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 1158
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 58/180 (32%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ ++ + + G+++V+ HG+G I+ E G K + ++ +
Sbjct: 466 SKKRIKTLENAQRLRSYTELKPGDYVVHVNHGIGRFEGIQTLETDGKKRD-YITITYQKG 524
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VP + + SE GK + + ++ +
Sbjct: 525 DQLFVPADQLSLVQKYVASE------------GKQPHVNKLGGSEWAKTKKRVAARVEDI 572
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + +++ ++S ++A + + A I+ ++
Sbjct: 573 ADDLIDLYAKREAEKGFAFSPDGSDQAA---FEAAFPYEPTPDQLRATAEIKADMEKAKP 629
>gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent coupling factor [Herbaspirillum
seropedicae SmR1]
gi|300075114|gb|ADJ64513.1| transcription-repair ATP-dependent coupling factor (helicase
superfamily II) protein [Herbaspirillum seropedicae
SmR1]
Length = 1145
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ +HG+G + ++ + EF + + K + L VPV + I
Sbjct: 475 DLSELKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAK-ETKLYVPVSQLHVISR 533
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + L + K + + +L ++
Sbjct: 534 YSGASPE--DAPLHALGSGQ--------------WEKAKRKAAQQVRDTAAELLNLYARR 577
Query: 130 EKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Q + + AIN + +++
Sbjct: 578 ALRQGHAFQYSAHDYEAFADSFGFEETADQAAAINAVIKDMTGGKP 623
>gi|258612325|ref|ZP_05711832.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
gi|258610889|gb|EEW23497.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
Length = 709
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+ ++ ++ G+ ++ ++ + + L +PV + +
Sbjct: 29 SELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLL-VYQGEDKLFIPVDQLDLVQKYV 87
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK+ + + K+ + ++++ +++
Sbjct: 88 GAE------------GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 135
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I+ ++
Sbjct: 136 AFSADDEMQR---EFEEAFPYQETEDQLRSISEIKKDMERPRP 175
>gi|170699745|ref|ZP_02890779.1| transcription-repair coupling factor [Burkholderia ambifaria
IOP40-10]
gi|170135336|gb|EDT03630.1| transcription-repair coupling factor [Burkholderia ambifaria
IOP40-10]
Length = 1156
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +++S
Sbjct: 580 AAREGHAFALEPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|23465592|ref|NP_696195.1| transcription-repair coupling factor [Bifidobacterium longum
NCC2705]
gi|23326260|gb|AAN24831.1| transcription-repair coupling factor [Bifidobacterium longum
NCC2705]
Length = 1194
Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRARGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|23335259|ref|ZP_00120496.1| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Bifidobacterium longum DJO10A]
gi|189439640|ref|YP_001954721.1| transcription-repair coupling factor (superfamily II helicase)
[Bifidobacterium longum DJO10A]
gi|189428075|gb|ACD98223.1| Transcription-repair coupling factor (superfamily II helicase)
[Bifidobacterium longum DJO10A]
Length = 1194
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|312133038|ref|YP_004000377.1| mfd [Bifidobacterium longum subsp. longum BBMN68]
gi|311774027|gb|ADQ03515.1| Mfd [Bifidobacterium longum subsp. longum BBMN68]
Length = 1194
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|239622194|ref|ZP_04665225.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239514191|gb|EEQ54058.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 1194
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
Length = 1180
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ HGVG ++ E+ G+ ++ + + + L VPV + +
Sbjct: 499 SELAVGDLVVHTNHGVGKYLGVETLEINGVHKDYLNLRYAGND-KLYVPVEQIDQVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E K + ++ K+ + ++++ ++
Sbjct: 558 GTE------------EKDPKIYALGGSDWKKVKKKVQTSVEDIADDLIKLYAEREASVGH 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S E A + + AI I+ ++ +
Sbjct: 606 RFS-SDGPEQAE--FESSFPYQETEDQLRAIKEIKEDMEKQRP 645
>gi|317481857|ref|ZP_07940884.1| transcription-repair coupling factor [Bifidobacterium sp.
12_1_47BFAA]
gi|316916648|gb|EFV38043.1| transcription-repair coupling factor [Bifidobacterium sp.
12_1_47BFAA]
Length = 1194
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|322690788|ref|YP_004220358.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320455644|dbj|BAJ66266.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 1194
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|150016433|ref|YP_001308687.1| CarD family transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149902898|gb|ABR33731.1| transcriptional regulator, CarD family [Clostridium beijerinckii
NCIMB 8052]
Length = 159
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP G+GT+ I+ + +G E+ ++ + + + +P KA + +RK+
Sbjct: 1 MFLIGDKVVYPMQGIGTVERIENKIFSGNTKEYIIVKITSNNLEIMIPSDKASNSNLRKV 60
Query: 73 SEAHFVERALKLVRGKARVKR-TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ ++ L + K+ R Q KI SG L AEVV DL + +
Sbjct: 61 CDNSTLDHILLTLENKSSEFELASSKERYQANAKKIRSGLLKDSAEVVYDLILMNKKKSL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
S SE+QL+ +A +V E++ + +ISE EA + + +NL+
Sbjct: 121 SSSEKQLFNTAYKFLVEEVSVIKNISEIEATSFLNLNLN 159
>gi|238789093|ref|ZP_04632882.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC
33641]
gi|238722857|gb|EEQ14508.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC
33641]
Length = 1099
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 29/184 (15%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A ++
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADE--NAPLHKLGGDA--------------WSRARQKA 557
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +V +L +Q + + + + + +AIN + ++
Sbjct: 558 AEKVRDVAAELLDIYAQRAVKSGFKFKLDREQYQLFCQSFPFETTPDQEQAINAVLNDMC 617
Query: 171 SKSS 174
+
Sbjct: 618 QPLA 621
>gi|322390530|ref|ZP_08064048.1| transcription-repair coupling factor [Streptococcus parasanguinis
ATCC 903]
gi|321142804|gb|EFX38264.1| transcription-repair coupling factor [Streptococcus parasanguinis
ATCC 903]
Length = 1164
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ + +V ++ + +PV + +
Sbjct: 487 ELEKGDYVVHQVHGIGQYLGIETIEISGVHRD-YVSIQYQNGDRISIPVDQIQMLSKYVA 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q K+ + ++++ +
Sbjct: 546 S------------DGKTPKINKLNDGRFQRTKQKVQTQVEDIADDLIKLYAERSQLEGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS+ + ++ + + + +I I+ ++ S
Sbjct: 594 YSQD---DENQEAFEQDFPYIETDDQLRSIEEIKKDMESNRP 632
>gi|332365100|gb|EGJ42865.1| transcription-repair coupling factor [Streptococcus sanguinis
SK355]
Length = 1167
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|325689360|gb|EGD31366.1| transcription-repair coupling factor [Streptococcus sanguinis
SK115]
Length = 1167
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
DSM 771]
gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
DSM 771]
Length = 1197
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/181 (11%), Positives = 60/181 (33%), Gaps = 26/181 (14%)
Query: 4 QQKRDAMRQ----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
++K RQ +TG+++V+ HG+G + + + +K ++ ++ + +
Sbjct: 511 RKKPSVQRQRVQDKMELFAELKTGDYVVHVNHGIGRYDGVVQLTIGDVKRDYLLVKYAGE 570
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L +P + I SE G + +K+
Sbjct: 571 D-KLYIPTDQVEMIQKYLGSE------------GGTPKLSRLGGAEWSRVKSKVKEAVKE 617
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E++ ++ +S+ +++ + + +AI ++ ++
Sbjct: 618 MAQELLALYAAREAVQGHPFSKDTVWQ---QEFEAAFPYEETPDQLKAIEEVKADMERPR 674
Query: 174 S 174
Sbjct: 675 P 675
>gi|83952089|ref|ZP_00960821.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM]
gi|83837095|gb|EAP76392.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM]
Length = 1153
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + + L
Sbjct: 460 PKRRRKAENFLTEAQSLSPGDLVVHVDHGIGRYHGMEVISAAGAAHECLLLEYA-ENARL 518
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+
Sbjct: 519 YLPVENIELLSRY-----GHDEGLLDRLGGGA----------WQAKKAKLKERIREMADR 563
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI+ + +L S
Sbjct: 564 LIRVAAERALRKAPVLEPEH---HAWEAFSARFPYQETDDQLGAISDVMEDLGSGRP 617
>gi|119505858|ref|ZP_01627923.1| transcription-repair coupling protein Mfd [marine gamma
proteobacterium HTCC2080]
gi|119458286|gb|EAW39396.1| transcription-repair coupling protein Mfd [marine gamma
proteobacterium HTCC2080]
Length = 1150
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 16/164 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G +V+ HGVG ++ E+ G EF ++ + L VPVG I
Sbjct: 476 DLTELRPGVPVVHLQHGVGRYMGLQSLEIDGAPAEFLLLQYADAD-KLYVPVGSLHLIAR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ + S + ++ + A+++ R +++
Sbjct: 535 YTGADPDTAP------------LHRLGSEQWEKARRRAREKANDVAAQLLEVYARREARQ 582
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+L E+A R E + + AI + ++ +
Sbjct: 583 GFQC---ELDETAWQRFSEEFPFEETPDQSAAIEAVRADMCATK 623
>gi|324989584|gb|EGC21530.1| transcription-repair coupling factor [Streptococcus sanguinis
SK353]
Length = 1167
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|170017776|ref|YP_001728695.1| transcription-repair coupling factor [Leuconostoc citreum KM20]
gi|169804633|gb|ACA83251.1| Transcription-repair coupling factor [Leuconostoc citreum KM20]
Length = 1178
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 21/179 (11%)
Query: 2 TFQQKRDAMRQ-----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
Q+K + G+++V+ HG+G ++ V G K ++ +
Sbjct: 477 PRQRKIANAERLKSYNELNVGDYVVHINHGIGRYEGLQTITVDGGKQDYL-SIAYQKNAK 535
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
+ +PV + I + L + G AK I
Sbjct: 536 IFIPVTQLNLIQKYIGASDAAKAPKLNKLGGAE--------------WAKTKRQVAAKIE 581
Query: 117 EVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ DL +Q E ++A + + + +I I+ ++ +
Sbjct: 582 DIADDLLDLYAQREALSGYAFPPDDTAQLQFDTTFGYPETPDQIRSIEEIKADMQKERP 640
>gi|332359490|gb|EGJ37309.1| transcription-repair coupling factor [Streptococcus sanguinis
SK1056]
Length = 1167
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|328945180|gb|EGG39335.1| transcription-repair coupling factor [Streptococcus sanguinis
SK1087]
Length = 1167
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|323350835|ref|ZP_08086494.1| transcription-repair coupling factor [Streptococcus sanguinis
VMC66]
gi|322123009|gb|EFX94712.1| transcription-repair coupling factor [Streptococcus sanguinis
VMC66]
Length = 1167
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|312869845|ref|ZP_07729986.1| transcription-repair coupling factor [Lactobacillus oris
PB013-T2-3]
gi|311094624|gb|EFQ52927.1| transcription-repair coupling factor [Lactobacillus oris
PB013-T2-3]
Length = 1178
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G + IK EV G+ ++ +I ++ + VPV + +
Sbjct: 497 TDLKPGDYVVHVNHGIGIFSGIKTMEVDGVHQDYMIIN-YRNNAQIFVPVTQLNLVQKYV 555
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE + + + ++ S E+V + ++
Sbjct: 556 SSE------------SRPPRINRLGGNEWAKTKRRVESKVEDIADELVDLYAKREAAKGY 603
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + +I ++ ++
Sbjct: 604 AFPADDYLQA---QFDANFPYNETRDQLRSIKEVKRDMEKPRP 643
>gi|308066876|ref|YP_003868481.1| transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
E681]
gi|305856155|gb|ADM67943.1| Transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
E681]
Length = 1175
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I EV G+ ++ + + L VP+ + I
Sbjct: 487 SELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHVLYAGGD-KLSVPIEQIDLIQKYV 545
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + +K+ S ++++ S P
Sbjct: 546 GSE------------DKEPKIYKLGGNEWTRVKSKVRSSVQDIADDLIKLYAERQSAPGF 593
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + AI I+ ++
Sbjct: 594 AFEKDSP---EQQEFEDMFPYDETRDQIRAIEEIKKDMEQSRP 633
>gi|125716894|ref|YP_001034027.1| transcription-repair coupling factor [Streptococcus sanguinis SK36]
gi|125496811|gb|ABN43477.1| Transcription-repair coupling factor, putative [Streptococcus
sanguinis SK36]
Length = 1167
Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|332363612|gb|EGJ41393.1| transcription-repair coupling factor [Streptococcus sanguinis
SK1059]
Length = 1167
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|212716156|ref|ZP_03324284.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
16992]
gi|212661523|gb|EEB22098.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
16992]
Length = 1182
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 18/182 (9%), Positives = 58/182 (31%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDK--- 54
++++ + G+++V+ HG+G E++++ + E+ VI + K
Sbjct: 489 PKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGAGANQTTREYLVIEYASSKRGA 548
Query: 55 --MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + ++A + + AK
Sbjct: 549 PADKLFIPTDQLDQVSKYIGADAPKLNKL--------------GGSDWAATKAKARKHVH 594
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ ++S+ ++ + + + I+ ++ ++
Sbjct: 595 EIAEDLVKLYSARQRMQGYAFSKDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 651
Query: 173 SS 174
Sbjct: 652 VP 653
>gi|149914914|ref|ZP_01903443.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b]
gi|149811102|gb|EDM70939.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b]
Length = 1155
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R Q G+ +V+ HGVG ++ AG E ++ + + L
Sbjct: 460 PKKRRRAENFLTEAQSLSPGDLVVHVDHGVGRYQGLEVITAAGAAHECLLLEYA-EGSKL 518
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV LS E L + G A Q A++
Sbjct: 519 YLPVENIEL-----LSRFGHEEGLLDKLGGGA----------WQAKKARLKERIREMADR 563
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + A + + AI + +L +
Sbjct: 564 LIRIAAERELRRAPVLEPEH---HAWEEFSARFPYTETDDQLRAIEDVLADLDAGRP 617
>gi|116617523|ref|YP_817894.1| transcription-repair coupling factor [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096370|gb|ABJ61521.1| transcription-repair coupling factor [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 1179
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 20/177 (11%)
Query: 3 FQQKRDAMR----QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++ ++ R G+++V+ HG+G ++ E G K ++ + +
Sbjct: 478 TRKIANSERLKSYNELNVGDYVVHINHGIGRYEGLQTIEADGGKQDYL-TIAYQQNAKIF 536
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+PV + I + + L + G AK I ++
Sbjct: 537 IPVTQLNLIQKYVGASDVAKKPKLNKLGGSE--------------WAKTKRQVAAKIEDI 582
Query: 119 VRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL ++ E + A + + + +I I+V++
Sbjct: 583 ADDLLELYAKREAQQGYVFPPDDHAQIKFDDSFGYPETPDQIRSIEEIKVDMQKLRP 639
>gi|289178790|gb|ADC86036.1| Transcription-repair coupling factor [Bifidobacterium animalis
subsp. lactis BB-12]
Length = 1248
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKL----EFFVIAFDKDK--- 54
++++ + G+ +V+ HG+G E++++ K E+ VI + K
Sbjct: 555 ARKRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTTGSGKNQATREYLVIEYAPSKRNA 614
Query: 55 --MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +E + + + AK
Sbjct: 615 PPDKLFIPTDQLDQVSKYIGAEIPKLNKL--------------GGSDWAQTKAKAKKHVH 660
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++R ++S+ ++ + + + I+ ++ ++
Sbjct: 661 EIAQNLIRLYSARQRAKGFAFSKDTPWQ---KELEDAFPYQETADQLTTIDDVKADMEKP 717
Query: 173 SS 174
Sbjct: 718 IP 719
>gi|227432633|ref|ZP_03914609.1| transcription-repair coupling factor [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351603|gb|EEJ41853.1| transcription-repair coupling factor [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 1179
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 20/177 (11%)
Query: 3 FQQKRDAMR----QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++ ++ R G+++V+ HG+G ++ E G K ++ + +
Sbjct: 478 TRKIANSERLKSYNELNVGDYVVHINHGIGRYEGLQTIEADGGKQDYL-TIAYQQNAKIF 536
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+PV + I + + L + G AK I ++
Sbjct: 537 IPVTQLNLIQKYVGASDVAKKPKLNKLGGSE--------------WAKTKRQVAAKIEDI 582
Query: 119 VRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL ++ E + A + + + +I I+V++
Sbjct: 583 ADDLLELYAKREAQQGYVFPPDDHAQIKFDDSFGYPETPDQIRSIEEIKVDMQKLRP 639
>gi|292669445|ref|ZP_06602871.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541]
gi|292648898|gb|EFF66870.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541]
Length = 1097
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 18/175 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M R + G+++V+ +HG+G ++ EVAG+ ++ I L VP
Sbjct: 415 MAPAGDRIRHFREIAPGDYVVHVSHGIGKYIGVETLEVAGVHRDYLHI-QYGGDDKLFVP 473
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ + +E L + A+ + ++ ++
Sbjct: 474 TDQVGLLQKYIGAEGSVPR--LHRMGTAD--------------WARARAKAQKSVEDIAD 517
Query: 121 DLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L ++ + + + A + + A+ I+ ++ S+
Sbjct: 518 KLLEIYAERQLAKGHAFTPDDAGQREFEEAFPYQETDDQLRAVAEIKRDMESEKP 572
>gi|251781081|ref|ZP_04824001.1| transcriptional regulator, CarD family [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243085396|gb|EES51286.1| transcriptional regulator, CarD family [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 160
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP G+G + I+E+ G K ++ +I K+ + + +P+ + + +R +
Sbjct: 1 MFNVGDKVVYPMQGIGIVQRIEEKLFCGKKKKYCIIQMLKNNLEIMIPLDRIPNSKLRMI 60
Query: 73 SEAHFVERALKLVRGK--ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
++ + +E L + +R + KI SG L +V +L +
Sbjct: 61 NDINTLEDILNNIGDTSNPEEADLPSKQRYEINLNKIKSGLLEDSLDVFYNLTLINKNKA 120
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +E+Q+ +A ++ EI + ISE EA +++ +++
Sbjct: 121 LNSTEKQILNTAQKFLIDEIRVIKDISENEATKILKSSIN 160
>gi|225351843|ref|ZP_03742866.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157090|gb|EEG70429.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 1182
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 18/182 (9%), Positives = 58/182 (31%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDK--- 54
++++ + G+++V+ HG+G E++++ + E+ VI + K
Sbjct: 489 PKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGAGANQTTREYLVIEYASSKRGA 548
Query: 55 --MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + ++A + + AK
Sbjct: 549 PADKLFIPTDQLDQVSKYIGADAPKLNKL--------------GGSDWAATKAKARKHVH 594
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ ++S+ ++ + + + I+ ++ ++
Sbjct: 595 EIAEDLVKLYSARQRMQGYAFSKDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 651
Query: 173 SS 174
Sbjct: 652 VP 653
>gi|167563120|ref|ZP_02356036.1| transcription-repair coupling factor [Burkholderia oklahomensis
EO147]
Length = 1157
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 476 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVSQLHVISR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 535 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 578
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +++S
Sbjct: 579 AAREGHAFALEPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 624
>gi|78186513|ref|YP_374556.1| transcription-repair coupling factor [Chlorobium luteolum DSM 273]
gi|78166415|gb|ABB23513.1| Transcription-repair coupling factor [Chlorobium luteolum DSM 273]
Length = 1109
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q + G+H+V+ +GVG ++ + E V+ + L V V +
Sbjct: 407 DLQKLKVGDHVVHEDYGVGIFRSLETITAGNSEQEC-VLVEYEGGDQLFVNVQNINLLSK 465
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
SE G V + S + K+ S +++ + Q
Sbjct: 466 YAASE------------GSRPVLSKLGSPKWAARKEKVRSKIRDIAINLIKLYAQRKMQA 513
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + +AI ++ ++ +
Sbjct: 514 GFAFGPDSIF---MREFESSFIFEETPDQLKAIEEVKKDMQATHP 555
>gi|325913119|ref|ZP_08175489.1| transcription-repair coupling factor [Lactobacillus iners UPII
60-B]
gi|325477540|gb|EGC80682.1| transcription-repair coupling factor [Lactobacillus iners UPII
60-B]
Length = 1110
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEAAFPYLETPDQIKAIKEIKLDMQKEKP 582
>gi|307822340|ref|ZP_07652572.1| transcription-repair coupling factor [Methylobacter tundripaludum
SV96]
gi|307736906|gb|EFO07751.1| transcription-repair coupling factor [Methylobacter tundripaludum
SV96]
Length = 1155
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G +V+ HGVG ++ E+ G+ EF + + L VPV IG
Sbjct: 477 NNLNELTIGSPVVHQEHGVGRYLGLQTLEIGGIASEFLTLEYANHD-KLYVPVSSLHVIG 535
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
A L + G K+ + I +V +L ++
Sbjct: 536 RYTGMSAE--NAPLHKLGGDQ--------------WGKVKQKAIKRIRDVAAELLEIHAK 579
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+ + + AI I +++S
Sbjct: 580 RAVKQGHAFSVENVEYAAFADAFPFEETPDQQTAIEAILEDMASPHP 626
>gi|118594716|ref|ZP_01552063.1| transcription-repair coupling factor [Methylophilales bacterium
HTCC2181]
gi|118440494|gb|EAV47121.1| transcription-repair coupling factor [Methylophilales bacterium
HTCC2181]
Length = 1133
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HGVG + + + EF V+ + L VPV + +
Sbjct: 462 DLTELSIGDPVVHEQHGVGRYQGLVDLDYGDGMTEFLVL-HYDKQDKLYVPVSQLHLVSR 520
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
A + + + K L+ I + +L ++
Sbjct: 521 YSGGPAESAP--IHKLGSGS--------------WEKSKKRALLQIHDTAAELLDLYAKR 564
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ V ++ + EAI + ++ S
Sbjct: 565 SLQRGYSSKINLNDYVSFVEGFPFEETVDQKEAIERVIEDMESARP 610
>gi|118589910|ref|ZP_01547314.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM
12614]
gi|118437407|gb|EAV44044.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM
12614]
Length = 1161
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 22/177 (12%)
Query: 3 FQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K G G+ +V+ HG+G +K E G + + + L
Sbjct: 477 SRRKAKGANVITEATGLSEGDLVVHVDHGIGRFIGLKTIEAVGAPHDCLELQYAGGD-KL 535
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + E L + G A Q AK+ L
Sbjct: 536 YLPVENIELLSRY---GSEDQEAQLDKLGGGA----------WQARKAKLKKRILEIADG 582
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + E + + + AI+ + +LSS
Sbjct: 583 LIKTAAQRALKTAPVV---ETPEGVYDEFATRFPYEETDDQLTAIDAVFEDLSSGRP 636
>gi|296332858|ref|ZP_06875318.1| YdeB [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305673204|ref|YP_003864876.1| putative transcriptional regulator [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150138|gb|EFG91027.1| YdeB [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305411448|gb|ADM36567.1| putative transcriptional regulator [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 158
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 81/153 (52%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F+ G++IVYP HGVG I I+E+E+ G K +++VI M + +P K + +R
Sbjct: 5 DMFQIGDNIVYPMHGVGIIEAIEEKEILGKKQQYYVIKMTISNMQVMIPTRKILSSSIRP 64
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+++ ++ + + + + W +R KI +G++ AEVVRDL R +
Sbjct: 65 VTDIRALKHIIHIFQHGESDRLLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKAL 124
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINL 164
+ SE+++ ++A ++ E+ + I+E + +
Sbjct: 125 NASEKKMLDNAYEFLISELEVIKGITENQIKSF 157
>gi|260433551|ref|ZP_05787522.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417379|gb|EEX10638.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis
ITI-1157]
Length = 1152
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ G E ++ + + L
Sbjct: 460 PKKRRKAENFLTETQSLSPGDLVVHVDHGIGRYMGMEVVTALGAAHECLLLEYA-EGAKL 518
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+
Sbjct: 519 YLPVENIELLSKY-----GHEEGLLDKLGGGA----------WQAKKAKLKERIREMADR 563
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI + +L S +
Sbjct: 564 LIRIAAERALRKAPIM---DPPPHAWEEFSARFPYQETEDQLRAIADVMEDLHSGTP 617
>gi|114327500|ref|YP_744657.1| transcription-repair coupling factor [Granulibacter bethesdensis
CGDNIH1]
gi|114315674|gb|ABI61734.1| transcription-repair coupling factor [Granulibacter bethesdensis
CGDNIH1]
Length = 1149
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++KR A G+ +V+ HG+G + V+G + + L
Sbjct: 455 PRKRKRADQFIAEATEIAEGDLVVHQDHGIGRYDGLVTLTVSGAPHDCLRL-LYDGNDKL 513
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + A AL + G W R AK+ E
Sbjct: 514 FLPVENIEMLSR---FGAETAGVALDKLGG------VSWQSR----KAKMKQRIRDMAGE 560
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + E A + + + AI + +++S
Sbjct: 561 LIRIAAERKVREAPMLTPQ---EGAWDEFCARFPFAETEDQARAIADVLEDMASGRP 614
>gi|218710049|ref|YP_002417670.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
gi|218323068|emb|CAV19245.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
Length = 1153
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV IG
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVASLNLIGRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + +V +L ++ E
Sbjct: 538 GAEDSAP--LHKLGGEA--------------WQKARKRAAEKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AIN + ++ +
Sbjct: 582 PGYKFVLDRGQYATFKSGFPFEETDDQAMAINAVMSDMCQAKA 624
>gi|308179637|ref|YP_003923765.1| transcription-repair coupling factor [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|308045128|gb|ADN97671.1| transcription-repair coupling factor [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 1175
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ EV G+ + ++ ++ + +PV + +
Sbjct: 494 TDLKPGDYVVHVNHGIGKYVGMETLEVDGVHQD-YITIAYQNNAKIFIPVTQLNLVQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + K+ + E+V + +++
Sbjct: 553 SSE------------SKTPRINKLGGTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGY 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ Y+ + + + + +IN I+ ++
Sbjct: 601 AFPPDDSYQ---DDFDNDFPYPETPDQIRSINEIKHDMERPKP 640
>gi|300768957|ref|ZP_07078848.1| transcription-repair coupling factor [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300493478|gb|EFK28655.1| transcription-repair coupling factor [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 1175
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ EV G+ + ++ ++ + +PV + +
Sbjct: 494 TDLKPGDYVVHVNHGIGKYVGMETLEVDGVHQD-YITIAYQNNAKIFIPVTQLNLVQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + K+ + E+V + +++
Sbjct: 553 SSE------------SKTPRINKLGGTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGY 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ Y+ + + + + +IN I+ ++
Sbjct: 601 AFPPDDSYQ---DDFDNDFPYPETPDQIRSINEIKHDMERPKP 640
>gi|238026956|ref|YP_002911187.1| transcription-repair coupling factor [Burkholderia glumae BGR1]
gi|237876150|gb|ACR28483.1| Transcription-repair coupling factor [Burkholderia glumae BGR1]
Length = 1157
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 47/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + + L VPV + I
Sbjct: 476 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-ESKLYVPVSQLHVISR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 535 YSGADPDSAP--LHQLGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 578
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +++S
Sbjct: 579 AAREGHAFALEPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 624
>gi|86146945|ref|ZP_01065263.1| transcription-repair coupling factor [Vibrio sp. MED222]
gi|85835195|gb|EAQ53335.1| transcription-repair coupling factor [Vibrio sp. MED222]
Length = 1153
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V + L VPV IG
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQHDAKLYVPVASLNLIGRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + +V +L ++ E
Sbjct: 538 GAEDSAP--LHKLGGEA--------------WQKARKRAAEKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AIN + ++ +
Sbjct: 582 PGYKFVLDRGQYATFKSGFPFEETDDQAMAINAVMSDMCQAKA 624
>gi|325686483|gb|EGD28512.1| transcription-repair coupling factor [Streptococcus sanguinis SK72]
Length = 1167
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|289704875|ref|ZP_06501292.1| transcription-repair coupling factor [Micrococcus luteus SK58]
gi|289558371|gb|EFD51645.1| transcription-repair coupling factor [Micrococcus luteus SK58]
Length = 1218
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/175 (10%), Positives = 60/175 (34%), Gaps = 4/175 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV-AGMKLEFFVIAFDKDKMCLKV 59
+ +++ + G+H+V+ HG+ E++ ++V G + ++ + L+
Sbjct: 520 LARKRRNAVDPLTLQPGDHVVHSQHGIARFVELQRRKVTGGPRTAPGAEESYREYLVLEY 579
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
K G R ++ V G+ M + +K E++
Sbjct: 580 APSKRGAPGDRLFVPTDQLDLISTYVGGETPSLSKMGGSDWAQTKSKAKRATREIAGELI 639
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R + +++ +++ + + + + I ++ ++ +
Sbjct: 640 RLYSARMASRGHAFAPDTPWQA---ELEEAFPFIETPDQLTTIEDVKKDMEAAVP 691
>gi|167570304|ref|ZP_02363178.1| transcription-repair coupling factor [Burkholderia oklahomensis
C6786]
Length = 1157
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 476 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-DSKLYVPVSQLHVISR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 535 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 578
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +++S
Sbjct: 579 AAREGHAFALEPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 624
>gi|296453842|ref|YP_003660985.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
longum JDM301]
gi|296183273|gb|ADH00155.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
longum JDM301]
Length = 1194
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAF-----DK 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYTPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRARGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|317126795|ref|YP_004093077.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
2522]
gi|315471743|gb|ADU28346.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
2522]
Length = 1185
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G I+ EVAG+ ++ I + + L VPV + +
Sbjct: 498 SELQVGDWVVHINHGIGKYLGIETLEVAGIHKDYMHITYAGND-KLYVPVDQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + ++ K+ S ++++ ++
Sbjct: 557 GSE------------EKEPKLYALGGNDWKKVTKKVKSSVQDIADDLIKLYAEREASKGF 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ + + AI I+ ++ +
Sbjct: 605 AFSKDGP---EQREFESSFPYQETEDQIRAIEEIKKDMELERP 644
>gi|145219954|ref|YP_001130663.1| transcription-repair coupling factor [Prosthecochloris vibrioformis
DSM 265]
gi|145206118|gb|ABP37161.1| transcription-repair coupling factor [Chlorobium phaeovibrioides
DSM 265]
Length = 1112
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/178 (10%), Positives = 58/178 (32%), Gaps = 21/178 (11%)
Query: 2 TFQQKRDA-----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
+ ++++ Q + G+ +V+ +G+G ++ + E V+ +
Sbjct: 397 SSRKRKIRGISLGDLQKLKVGDFVVHEDYGIGRFKALETITAGNSEQEC-VLVEYEGGDQ 455
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L V V + SE+ V + S + K+ +
Sbjct: 456 LFVNVQNINLLSKYAASESS------------TPVLSKLGSSKWAARKEKVRNKLRDIAI 503
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + QP ++ ++ + + + +AI ++ ++ +
Sbjct: 504 NLIKLYAQRKMQPGFAFGPDSIF---MREFEASFIFDETPDQHKAIEELKKDMQAPHP 558
>gi|254555607|ref|YP_003062024.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
gi|254044534|gb|ACT61327.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
Length = 1175
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ EV G+ + ++ ++ + +PV + +
Sbjct: 494 TDLKPGDYVVHVNHGIGKYVGMETLEVDGVHQD-YITIAYQNNAKIFIPVTQLNLVQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + K+ + E+V + +++
Sbjct: 553 SSE------------SKTPRINKLGGTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGY 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ Y+ + + + + +IN I+ ++
Sbjct: 601 AFPPDDSYQ---DDFDNDFPYPETPDQIRSINEIKHDMERPKP 640
>gi|28377424|ref|NP_784316.1| transcription-repair coupling factor [Lactobacillus plantarum
WCFS1]
gi|28270256|emb|CAD63157.1| transcription-repair coupling factor [Lactobacillus plantarum
WCFS1]
Length = 1175
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ EV G+ + ++ ++ + +PV + +
Sbjct: 494 TDLKPGDYVVHVNHGIGKYVGMETLEVDGVHQD-YITIAYQNNAKIFIPVTQLNLVQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + K+ + E+V + +++
Sbjct: 553 SSE------------SKTPRINKLGGTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGY 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ Y+ + + + + +IN I+ ++
Sbjct: 601 AFPPDDSYQ---DDFDNDFPYPETPDQIRSINEIKHDMERPKP 640
>gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus
C3-41]
gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus
C3-41]
Length = 1169
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 62/182 (34%), Gaps = 26/182 (14%)
Query: 3 FQQKRDAMR----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
++K + + G+++V+ HG+G ++ EV G ++ I +
Sbjct: 476 AKKKARTQKMTNAERIKSYTEIKPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHI-RYR 534
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + I SE + + ++ AK++S
Sbjct: 535 ADDKLYVPVEQIDLIQKYVASE------------DREPKLHKLGGAEWKKAKAKVSSAVQ 582
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ + +++ +++ A + + +I ++ ++ +
Sbjct: 583 DIADDLIKLYAKREAEKGHAFTPD---NDDQRNFEAMFAYEETEDQLRSIVEVKRDMERE 639
Query: 173 SS 174
Sbjct: 640 RP 641
>gi|84386598|ref|ZP_00989624.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
gi|84378404|gb|EAP95261.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
Length = 1153
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV IG
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVASLNLIGRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + +V +L ++ E
Sbjct: 538 GAEDSAP--LHKLGGEA--------------WQKARKRAAEKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AIN + ++ +
Sbjct: 582 PGYKFVLDRGQYATFKSGFPFEETDDQAMAINAVMSDMCQAKA 624
>gi|53803839|ref|YP_114301.1| transcription-repair coupling factor [Methylococcus capsulatus str.
Bath]
gi|53757600|gb|AAU91891.1| transcription-repair coupling factor [Methylococcus capsulatus str.
Bath]
Length = 1147
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G +V+ HGVG ++ + G++ EF + L VPV +
Sbjct: 478 EELEIGAPVVHREHGVGRYLGLQRIDTGGVESEFL-TIRYANDDKLYVPVSALGMVSRYA 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ L + E AK L + +V +L ++
Sbjct: 537 GADPEHAP--LHRLGS--------------EQWAKARRKALEQVRDVAAELLDIHARRAA 580
Query: 132 SYSERQL-YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +L++
Sbjct: 581 ASGRSFATLTEEYLSFAAQFPFEETPDQETAIQDVIRDLAAPRP 624
>gi|256822363|ref|YP_003146326.1| transcription-repair coupling factor [Kangiella koreensis DSM
16069]
gi|256795902|gb|ACV26558.1| transcription-repair coupling factor [Kangiella koreensis DSM
16069]
Length = 1140
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ G+G + + E ++ E+ + L +PV IG
Sbjct: 473 ELKEGDPVVHIEQGIGRYRGLVKLESGDIEAEYL-MIEYSGGDKLYMPVQSLHLIGRYSG 531
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ W + E K +V +L ++
Sbjct: 532 TNPELA----------------PWHKLGTEQWDKARQKAAEKARDVAAELLDIYARRAAK 575
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + R E A ++ + +IN + +++S
Sbjct: 576 EGIQYQLDETEYRRFCAEFAFEETVDQTTSINAVIRDMTSHLP 618
>gi|254520523|ref|ZP_05132579.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
Length = 1169
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 19/176 (10%)
Query: 2 TFQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+K + + G+++V+ HGVG IK+ EV G ++ L
Sbjct: 488 ASSRKGIGKIKSFAELKLGDYVVHANHGVGVYKGIKQIEVGGHTRDYL-DIVYDKGDKLY 546
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VPV + + SE GK + S + AK+ ++
Sbjct: 547 VPVDQLDLVQKYIGSE------------GKTPKVNKLGSNEWNKAKAKVKKSINEIAEDL 594
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
V+ + + + ++ + E + + ++ I+ ++ +
Sbjct: 595 VKLYATRATLKGYKFRKDTEWQ---KQFEDEFPFEETPDQLTSLEEIKHDMETDKP 647
>gi|309808765|ref|ZP_07702651.1| putative transcription-repair coupling factor [Lactobacillus iners
LactinV 01V1-a]
gi|308168001|gb|EFO70133.1| putative transcription-repair coupling factor [Lactobacillus iners
LactinV 01V1-a]
Length = 708
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGQKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQRD---FEAAFPYLETPDQIKAIREIKLDMQKEKP 582
>gi|304405853|ref|ZP_07387511.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
YK9]
gi|304345096|gb|EFM10932.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
YK9]
Length = 1177
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I E+ G+ ++ + + L VP+ + I
Sbjct: 486 TELKVGDYVVHQNHGIGKYLGIGTLEIGGIHKDYMHVMYAGGD-KLSVPIEQIDMIQKYV 544
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + K+ S E+++ + P
Sbjct: 545 GSE------------EKEPKVYKLGGNEWARVKTKVRSSVKDIADELIKLYADRQASPGF 592
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Y+ + + AI I+ ++
Sbjct: 593 AFGQDTPYQ---QEFEAMFPYDETRDQLRAIGEIKADMEMSRP 632
>gi|319937742|ref|ZP_08012145.1| hypothetical protein HMPREF9488_02981 [Coprobacillus sp. 29_1]
gi|319807177|gb|EFW03791.1| hypothetical protein HMPREF9488_02981 [Coprobacillus sp. 29_1]
Length = 169
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 68/165 (41%), Gaps = 7/165 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFV-IAFDKDKMCLKVPVGKAIDIGM-R 70
++ + +VY GV IT++ ++ A +E++V + + +P+ + +
Sbjct: 1 MYKINDMVVYGNEGVCKITDLTKRSFANKVVEYYVLKPVYNEHSIVYIPIDNEELVSKIK 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RT 125
++ + ++ + + ++R ++Y I SG+ + +++R L+
Sbjct: 61 RILSVEDIHELIRTLPNEDYCWIENDNQRKEKYREIIKSGNRKELMKMIRTLYLYQQELK 120
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ ++ + ++ A + E A V I + + ++ I
Sbjct: 121 KDGKKIHAADDKFFKDAEKVLYDEFAYVLDIEQEDVVSFICDQFE 165
>gi|94266121|ref|ZP_01289836.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1]
gi|93453318|gb|EAT03758.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1]
Length = 1162
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 18/169 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ +V+ HG+G + E+ G+ ++ + L +PV +
Sbjct: 472 KIVSHDEINPGDPVVHRRHGIGIYRGLVPIELDGITNDYL-EIHYRGADKLYIPVDQLNS 530
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+G K + + + K+ A+ +V RDL +
Sbjct: 531 VGKYKG------------LADQEPTLDKLGDNSWLATRQKVKK----AVWQVARDLLKLY 574
Query: 127 SQPEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + R + + + + +AI + +L S
Sbjct: 575 AKRQLAEGNRFSPPGEMYHELEESFPYDETPGQLKAIGEVIDDLCSSKP 623
>gi|328543941|ref|YP_004304050.1| Mfd, transcription-repair coupling factor [polymorphum gilvum
SL003B-26A1]
gi|326413685|gb|ADZ70748.1| Mfd, transcription-repair coupling factor [Polymorphum gilvum
SL003B-26A1]
Length = 1166
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G+ +V+ HG+G +K E G + + + L +PV +
Sbjct: 488 TEATALSEGDLVVHVDHGIGRFVGLKTIEAVGAPHDCLELQYAGGD-KLYLPVENIELLT 546
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ E L + G A Q A++ L ++R +
Sbjct: 547 RY---GSEETEAQLDRLGGGA----------WQARKARMKKRILEIADGLIRTAAARALK 593
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E A + + + AI+ + +L+S
Sbjct: 594 TAPVV---ETPEGAYDEFATRFPYEETEDQLNAIDAVFADLASGRP 636
>gi|239917090|ref|YP_002956648.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
2665]
gi|281414448|ref|ZP_06246190.1| transcription-repair coupling factor [Micrococcus luteus NCTC 2665]
gi|239838297|gb|ACS30094.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
2665]
Length = 1218
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/175 (10%), Positives = 59/175 (33%), Gaps = 4/175 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV-AGMKLEFFVIAFDKDKMCLKV 59
+ +++ + G+H+V+ HG+ E++ ++V G + ++ + L+
Sbjct: 520 LARKRRNAVDPLTLQPGDHVVHSQHGIARFVELQRRKVTGGPRTAPGAEESYREYLVLEY 579
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
K G R ++ V G+ M + +K E++
Sbjct: 580 APSKRGAPGDRLFVPTDQLDLISTYVGGETPSLSRMGGSDWAQTKSKAKRATREIAGELI 639
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R + +++ +++ + + + + I ++ ++
Sbjct: 640 RLYSARMASRGHAFAPDTPWQA---ELEEAFPFIETPDQLTTIEDVKKDMEEAVP 691
>gi|110634054|ref|YP_674262.1| transcription-repair coupling factor [Mesorhizobium sp. BNC1]
gi|110285038|gb|ABG63097.1| transcription-repair coupling factor [Chelativorans sp. BNC1]
Length = 1167
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K E AG E I + L +PV +
Sbjct: 492 SEASALSAGDIVVHADHGIGRFVGLKTIEAAGAPHECLEIHYAG-DDRLFLPVENIELLS 550
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ E L + G A Q AK+ L ++++ +
Sbjct: 551 RY---GSDSAEATLDKLGGGA----------WQSRKAKLKKRLLEMAGQLIKLAAERQMR 597
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P + + + AI+ + + SS
Sbjct: 598 PAAKIMPPEGL---YGEFAARFPYEETDDQQTAIDAVIEDFSSGRP 640
>gi|167619661|ref|ZP_02388292.1| transcription-repair coupling factor [Burkholderia thailandensis
Bt4]
Length = 1189
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 508 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 566
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 567 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 610
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 611 AAREGHAFALDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 656
>gi|83720153|ref|YP_442612.1| transcription-repair coupling factor [Burkholderia thailandensis
E264]
gi|83653978|gb|ABC38041.1| transcription-repair coupling factor [Burkholderia thailandensis
E264]
Length = 1217
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 536 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 594
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 595 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 638
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 639 AAREGHAFALDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 684
>gi|152965035|ref|YP_001360819.1| transcription-repair coupling factor [Kineococcus radiotolerans
SRS30216]
gi|151359552|gb|ABS02555.1| transcription-repair coupling factor [Kineococcus radiotolerans
SRS30216]
Length = 1193
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G+ +V+ HGVG E+ ++ + G E+ V L+ K
Sbjct: 497 NAVDPLTLRPGDFVVHEQHGVGRFVEMVQRTIQGATREYLV---------LEYAPSKRGQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R +++ K G+A M + + ++++
Sbjct: 548 PGDRLFVPTDTLDQVTKYTGGEAPTLSKMGGSDWAKTKSNARRAVKQIAGDLIKLYSARM 607
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + V + + +I+ ++ ++
Sbjct: 608 ATKGYQFGPDTPWQR---ELEDAFPYVETPDQLASIDEVKADMMKPVP 652
>gi|221198238|ref|ZP_03571284.1| transcription-repair coupling factor [Burkholderia multivorans
CGD2M]
gi|221209180|ref|ZP_03582172.1| transcription-repair coupling factor [Burkholderia multivorans
CGD2]
gi|221170918|gb|EEE03373.1| transcription-repair coupling factor [Burkholderia multivorans
CGD2]
gi|221182170|gb|EEE14571.1| transcription-repair coupling factor [Burkholderia multivorans
CGD2M]
Length = 1156
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 47/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-ESKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 580 AAREGHAFALDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|167581546|ref|ZP_02374420.1| transcription-repair coupling factor [Burkholderia thailandensis
TXDOH]
Length = 1175
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 494 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 552
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 553 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 596
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 597 AAREGHAFALDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 642
>gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
Length = 1175
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I EV G+ ++ I + L VP+ + I
Sbjct: 487 SELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHILYAGGD-KLSVPIEQIDLIQKYV 545
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + +K+ S ++++ S P
Sbjct: 546 GSE------------DKEPKIYKLGGNEWTRVKSKVRSSVQDIADDLIKLYAERQSAPGF 593
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + AI I+ ++
Sbjct: 594 AFEKDSP---EQQEFEDMFPYDETRDQVRAIEEIKKDMEQSRP 633
>gi|148980820|ref|ZP_01816230.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
gi|145961055|gb|EDK26376.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
Length = 1153
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV IG
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVASLNLIGRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + +V +L ++ E
Sbjct: 538 GAEESAP--LHKLGGEA--------------WQKARKRAAEKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AIN + ++ +
Sbjct: 582 PGYKFVLDRGQYATFKSGFPFEETDDQAMAINAVMSDMCQAKA 624
>gi|302877849|ref|YP_003846413.1| transcription-repair coupling factor [Gallionella capsiferriformans
ES-2]
gi|302580638|gb|ADL54649.1| transcription-repair coupling factor [Gallionella capsiferriformans
ES-2]
Length = 1134
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 47/177 (26%), Gaps = 23/177 (12%)
Query: 4 QQKRDAM-----RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+K + + G+ +V+ HG+ + ++ EF ++ + L
Sbjct: 454 AKKTNIEGMLRDLSELKVGDPVVHEQHGIARYQGLVNLDLGEGMGEFLLLEYAGSD-KLY 512
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VPV IG S L + A K + + +
Sbjct: 513 VPVSLLHVIGRY--SGGAHDTAPLHKLGNGA--------------WDKAKRRAMQQVRDT 556
Query: 119 VRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+L +Q + + AIN + +L S
Sbjct: 557 AAELLNIYAQRATRKGHAFKLTLRDYEEFAAGFGFEETPDQAAAINAVIEDLQSGKP 613
>gi|167836965|ref|ZP_02463848.1| transcription-repair coupling factor [Burkholderia thailandensis
MSMB43]
Length = 1189
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + + L VPV + I
Sbjct: 508 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYA-SDSKLYVPVAQLHVISR 566
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 567 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 610
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 611 AAREGHAFALDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 656
>gi|261367183|ref|ZP_05980066.1| conserved hypothetical protein [Subdoligranulum variabile DSM
15176]
gi|282570778|gb|EFB76313.1| conserved hypothetical protein [Subdoligranulum variabile DSM
15176]
Length = 167
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 8/169 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFV-IAFDKDKMCLKVPVGKAIDIGMRK 71
F+ G+ + Y GV TI E K +AG + E ++ M + VP + + +
Sbjct: 1 MFQVGDAVSYGTSGVCTIAEKKNVRLAGQQCECYILKPVYDSTMKICVPCNSQVLLDRMR 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE- 130
+ + + L++ A R + Y + SGD A+ ++RD++
Sbjct: 61 ALPSK--QELMDLLQEPAPEHEPDPEVRKEHYRQTLQSGDRHALLRMIRDIYTERRHRHA 118
Query: 131 ----KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
S E A N + E A I E + I L + +++
Sbjct: 119 MGKQLSSYEDSALREAQNILHSEFAYTMGIDPGEVPDFIAGVLDNAANQ 167
>gi|82701772|ref|YP_411338.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC
25196]
gi|82409837|gb|ABB73946.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC
25196]
Length = 1156
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF L VPV + IG
Sbjct: 482 DLSEIKAGDPVVHEQHGIGRYLGLVSMDLGEGETEFL-SLEYASGDKLYVPVSQLHLIGR 540
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ L + K + + + +L +Q
Sbjct: 541 YSGASPESAP--LHKLGSGQ--------------WDKAKRKAMQQVRDTAAELLNIYAQR 584
Query: 130 EKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+L E V + + AI + +L+S
Sbjct: 585 AARVGHAFRLKEQDYEAFVEGFGFEETPDQATAIAAVIDDLTSARP 630
>gi|240143904|ref|ZP_04742505.1| transcriptional regulator, CarD family [Roseburia intestinalis
L1-82]
gi|257204097|gb|EEV02382.1| transcriptional regulator, CarD family [Roseburia intestinalis
L1-82]
Length = 180
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIG 68
R+ F GE++V A GV I +I +++G E ++V+A DK + I
Sbjct: 14 RRMFEIGEYVVCGAKGVCQIRDITHIDMSGADKEKLYYVLAPVGDKNGTIYVPTDSEKII 73
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
MR+ ER + + + +R + Y + + D A +V+ L++ +
Sbjct: 74 MRRTISKEEAERLIDELPQIELLWVPDDKQREETYKEALRTCDYHAWVSIVKTLYQRKKE 133
Query: 129 -----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ + + + ++A N + E++ + + + I LS
Sbjct: 134 RLAQGKKATAVDERYMKAAENGLYGELSLTLGVPREKMEDYIRERLS 180
>gi|160931462|ref|ZP_02078858.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753]
gi|156869527|gb|EDO62899.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753]
Length = 1149
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 62/177 (35%), Gaps = 20/177 (11%)
Query: 3 FQQKRDAMRQGFR-----TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ ++ + G++IV+ AHGVG I + E+ G+ ++ + + K + L
Sbjct: 475 ARKRQKNAKEIYSLSELAPGDYIVHSAHGVGVFEGIHKLEMQGVTKDYLKVRYAKGDI-L 533
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + + + R + + Q+ A++ S E
Sbjct: 534 YVPVTQLDMVSKYIGPKEEVKVRL-----------NRLGGQDWQKAKARVRSAVKDIAKE 582
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ ++ ++ + + I I+ ++ +
Sbjct: 583 LIKLYAERMKLKGHAFPPDTGWQRD---FESRFEYEETEDQLRCIQEIKEDMEKEQP 636
>gi|104773517|ref|YP_618497.1| transcription-repair coupling factor [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103422598|emb|CAI97201.1| Transcription-repair coupling factor [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 1158
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 58/180 (32%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMR-------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ ++ + + G+++V+ HG+G I+ E G K + ++ +
Sbjct: 466 SKKRIKTLENAQRLRSYTELKPGDYVVHVNHGIGRFEGIQTLETDGKKRD-YITITYQKG 524
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VP + + SE GK + + ++ +
Sbjct: 525 DQLFVPDDQLSLVQKYVASE------------GKQPHINKLGGSEWAKTKKRVAARVEDI 572
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + +++ ++S ++A + + A I+ ++
Sbjct: 573 ADDLIELYAKREAEKGFAFSPDGSDQAA---FEAAFPYEPTPDQLRATAEIKADMEKAKP 629
>gi|255327280|ref|ZP_05368354.1| transcription-repair coupling factor [Rothia mucilaginosa ATCC
25296]
gi|255295560|gb|EET74903.1| transcription-repair coupling factor [Rothia mucilaginosa ATCC
25296]
Length = 1249
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 60/173 (34%), Gaps = 4/173 (2%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T +++ G+++V+ HG+G E+ + VAG V K+ + ++
Sbjct: 545 TRRRRNAVDPLALNPGDYVVHERHGIGRFVEMTSRPVAGASPVNGVQPM-KEYLVIEYAP 603
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K R + ++ V G+ M + ++ A++V+
Sbjct: 604 AKRGGAPDRLFVPSDQLDLISNYVGGENPSLSKMGGSDWAKTKSRARKAVKEIAADLVKL 663
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ ++ + + + AI+ ++ ++ +
Sbjct: 664 YSARQASRGHAFAADTPWQR---ELEESFPYNETPDQLTAIHEVKEDMEKEIP 713
>gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905]
gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905]
Length = 1169
Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 62/182 (34%), Gaps = 26/182 (14%)
Query: 3 FQQKRDAMR----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
++K + + G+++V+ HG+G ++ EV G ++ I +
Sbjct: 476 AKKKARTQKMTNAERIKSYTEIKPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHI-RYR 534
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + I SE + + ++ AK++S
Sbjct: 535 ADDKLYVPVEQIDLIQKYVASE------------DREPKLHKLGGAEWKKAKAKVSSAVQ 582
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ + +++ +++ A + + +I ++ ++ +
Sbjct: 583 DIADDLIKLYAKREAEKGYAFTPD---NDDQRNFEAMFAYEETEDQLRSIVEVKRDMERE 639
Query: 173 SS 174
Sbjct: 640 RP 641
>gi|238749649|ref|ZP_04611154.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380]
gi|238712304|gb|EEQ04517.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380]
Length = 1148
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I
Sbjct: 476 ELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLISRYSG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G + ++ + +V +L +Q
Sbjct: 535 GADE--NAPLHRLGG--------------DVWSRARQKAAEKVRDVAAELLDIYAQRAAK 578
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + +AIN + ++ +
Sbjct: 579 SGFKFKLDRDQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLA 621
>gi|260427548|ref|ZP_05781527.1| transcription-repair coupling factor [Citreicella sp. SE45]
gi|260422040|gb|EEX15291.1| transcription-repair coupling factor [Citreicella sp. SE45]
Length = 1160
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + + L
Sbjct: 469 PKKRRKAENFLTETQSLSPGDLVVHVDHGIGRYQGMEVITAAGAAHECLLLEYA-EGARL 527
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q A++ +
Sbjct: 528 YLPVENIELLSRY-----GHEEGLLDRLGGGA----------WQAKKARLKERIREMADK 572
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI + +++S +
Sbjct: 573 LIRVAAERALRKAPII---DPPPGAWESFCARFPYSETDDQLSAIEDVLGDMTSGNP 626
>gi|329920532|ref|ZP_08277264.1| transcription-repair coupling factor [Lactobacillus iners SPIN
1401G]
gi|328936208|gb|EGG32661.1| transcription-repair coupling factor [Lactobacillus iners SPIN
1401G]
Length = 1110
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGQKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEAAFPYLETPDQIKAIREIKLDMQKEKP 582
>gi|238762212|ref|ZP_04623184.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC
33638]
gi|238699559|gb|EEP92304.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC
33638]
Length = 1048
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 29/184 (15%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 355 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 414
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G+A ++
Sbjct: 415 GED-KLYVPVSSLHLISRYSGGADD--NAPLHKLGGEA--------------WSRARQKA 457
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +V +L +Q + + + + + +AIN + ++
Sbjct: 458 AEKVRDVAAELLDIYAQRAAKSGFKFKLDKEQYQLFCQSFPFETTPDQEQAINAVLSDMC 517
Query: 171 SKSS 174
+
Sbjct: 518 RPLA 521
>gi|88800098|ref|ZP_01115668.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
gi|88777224|gb|EAR08429.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
Length = 1151
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 24/180 (13%)
Query: 3 FQQKRDAM--------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K + G +V+ HG+G ++ +V G EF + + +
Sbjct: 463 RRRKTETDSDDQVIKSLTELHPGTPVVHLDHGIGRYRGLETLDVDGHTQEFLKLEYA-EG 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I ++ + + + R K
Sbjct: 522 SNLYVPVSNLHLISRYSGADVDYAP------------IHKLGNDRWARTKRKAAEKIRDT 569
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ R ++Q + + + + + +AI + +L
Sbjct: 570 AAELLDIYARREAQSGFGFPFD---STEYQQFAAGFGFEETDDQAQAIRKVLNDLRQPRP 626
>gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4]
gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus
OF4]
Length = 1180
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G ++ E+ G+ ++ + + L VPV + +
Sbjct: 500 SELKVGDLVVHTNHGIGKYLGVETLEINGLHKDYLHLRYAG-DDKLYVPVEQIDQVQKYV 558
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + ++ ++ S ++++ ++
Sbjct: 559 GSE------------EKDPKIYALGGNDWKKVKKRVQSSVEDIADDLIKLYAEREASKGY 606
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS+ + A + + A+ I+ ++ +
Sbjct: 607 AYSK----DGAEQADFEGTFPYQETEDQIRAVEEIKEDMEKERP 646
>gi|289424265|ref|ZP_06426048.1| transcription-repair coupling factor [Propionibacterium acnes
SK187]
gi|289154962|gb|EFD03644.1| transcription-repair coupling factor [Propionibacterium acnes
SK187]
Length = 1198
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 506 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 556
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE++R
Sbjct: 557 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIRLYAARQ 616
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 617 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTIADVKRDMEQVVP 661
>gi|239621794|ref|ZP_04664825.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|239514985|gb|EEQ54852.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
CCUG 52486]
Length = 179
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 31 TEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKA 89
I E+ V G+ E+ ++ + + VPV A +G+R + A V + ++R
Sbjct: 2 EAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDIVSASEVAKVFGILRTPI 61
Query: 90 RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-SQPEKSYSERQLYESALNRMVR 148
K WSRR + KI +GD+ IAEVVRDL + D + S E+++ A +
Sbjct: 62 IEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGLSAGEKRMLTKARAILTS 121
Query: 149 EIAAVNSISEPEAINLIEVNL--SSKSSKTEKSTSENQDKAA 188
EIA I E EA L++VNL +K + ++AA
Sbjct: 122 EIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEAA 163
>gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
Length = 1179
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ L VPV + +
Sbjct: 499 SELKIGDYVVHVNHGIGKYLGIETLEINGLHKDYL-NIRYSGSDQLYVPVDQIDLVQKYV 557
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S ++++ ++
Sbjct: 558 GSE------------GKEPKIYKLGGNDWKRVKKKVESSVQDIADDLIKLYAEREASKGY 605
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I++++ +
Sbjct: 606 AFSPDGDMQREFEL---SFPYQETEDQLRSIHEIKLDMEKERP 645
>gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
B-30929]
gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
B-30929]
Length = 1178
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G +K EV G ++ KD L +PV + I
Sbjct: 494 TDLKPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYL-TISYKDNAKLFIPVTQLNLIQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + AK+ S E++ + ++
Sbjct: 553 SSE------------DKHPRINKLGGSEWAKTKAKVASKIEDIADELIDLYAKRSAEKGY 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + ++ + + + I+ ++ ++
Sbjct: 601 AYPQDDSLQA---EFEAAFPYSETPDQLRSATEIKRDMETQHP 640
>gi|260768914|ref|ZP_05877848.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972]
gi|260616944|gb|EEX42129.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972]
Length = 1153
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 28/183 (15%)
Query: 3 FQQKRDAM----------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
++K++ + G+ +V+ HG+G ++ E GM E +V +
Sbjct: 459 QRRKKERKVTNSDAVIRNLAELKPGQPVVHIDHGIGRYVGLQTLEAGGMTTE-YVTLEYQ 517
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VPV I L + G+A K
Sbjct: 518 NDAKLYVPVSSLNLISRYSGGAEESAP--LHKLGGEA--------------WVKARRKAA 561
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +V +L ++ E + + + + AIN + ++
Sbjct: 562 EKVRDVAAELLDVYAKRELKPGYKFQLDRDQYATFKSGFPFEETDDQAMAINAVMSDMCQ 621
Query: 172 KSS 174
+
Sbjct: 622 PKA 624
>gi|332364170|gb|EGJ41947.1| transcription-repair coupling factor [Streptococcus sanguinis SK49]
Length = 1167
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIKYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R + K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFHKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|290968874|ref|ZP_06560411.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
str. 28L]
gi|290781170|gb|EFD93761.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
str. 28L]
Length = 1095
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 61/171 (35%), Gaps = 16/171 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+ ++ + ++G++IV+ AHG+G +K E+ G+ ++ I + + L VP +
Sbjct: 415 KSEKINVFTDLKSGDYIVHHAHGIGRYVGLKTIEIDGVHRDYLEIHYAGSDI-LYVPTDQ 473
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I +E G+ M + Q+ AK ++V
Sbjct: 474 LRLIQRYIGNE------------GEIPKLNKMGGKDWQKTRAKAQKSVDNLAEKLVTLYA 521
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + P +Y ++ + + +A+ I+ +
Sbjct: 522 KREVVPGFAYPPDTPFQR---EFEEAFPYEETADQLKAVAHIKAAMEKPYP 569
>gi|312866818|ref|ZP_07727031.1| putative transcription-repair coupling factor [Streptococcus
parasanguinis F0405]
gi|311097601|gb|EFQ55832.1| putative transcription-repair coupling factor [Streptococcus
parasanguinis F0405]
Length = 764
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ + +V ++ + +PV + +
Sbjct: 487 ELEKGDYVVHQVHGIGQYLGIETIEISGVHRD-YVSIQYQNGDRISIPVDQIQMLSKYVA 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ ++ + ++++ +
Sbjct: 546 S------------DGKTPKINKLNDGRFQKTKQRVQTQVEDIADDLIKLYAERSQLEGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + ++ + + + +I I+ ++ S
Sbjct: 594 YSSD---DENQEAFEQDFPYIETDDQLRSIEEIKKDMESNRP 632
>gi|319940213|ref|ZP_08014566.1| transcription-repair coupling factor [Streptococcus anginosus
1_2_62CV]
gi|319810684|gb|EFW07014.1| transcription-repair coupling factor [Streptococcus anginosus
1_2_62CV]
Length = 1164
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 487 ELEKGDYVVHNVHGIGRYLGIETIEISGIHRDYL-TIQYQNADRISIPVDQIQLLSKYVA 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + R Q+ ++ ++++ +
Sbjct: 546 S------------DGKAPKINKLNDGRFQKTKQRVQHQVEDIAEDLIKLYAERSQLKGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S Y+ + V + + +I ++ ++ S
Sbjct: 594 FSSDDSYQ---QEFDNDFPYVETEDQLRSIKEVKKDMESDHP 632
>gi|183601453|ref|ZP_02962823.1| transcription-repair coupling factor [Bifidobacterium animalis
subsp. lactis HN019]
gi|241191047|ref|YP_002968441.1| transcription-repair coupling factor [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196453|ref|YP_002970008.1| transcription-repair coupling factor [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183219059|gb|EDT89700.1| transcription-repair coupling factor [Bifidobacterium animalis
subsp. lactis HN019]
gi|240249439|gb|ACS46379.1| transcription-repair coupling factor [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251007|gb|ACS47946.1| transcription-repair coupling factor [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|295794036|gb|ADG33571.1| transcription-repair coupling factor [Bifidobacterium animalis
subsp. lactis V9]
Length = 1194
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKL----EFFVIAFDKDK--- 54
++++ + G+ +V+ HG+G E++++ K E+ VI + K
Sbjct: 501 ARKRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTTGSGKNQATREYLVIEYAPSKRNA 560
Query: 55 --MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +E + + + AK
Sbjct: 561 PPDKLFIPTDQLDQVSKYIGAEIPKLNKL--------------GGSDWAQTKAKAKKHVH 606
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++R ++S+ ++ + + + I+ ++ ++
Sbjct: 607 EIAQNLIRLYSARQRAKGFAFSKDTPWQ---KELEDAFPYQETADQLTTIDDVKADMEKP 663
Query: 173 SS 174
Sbjct: 664 IP 665
>gi|57239455|ref|YP_180591.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
Welgevonden]
gi|58579431|ref|YP_197643.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
Welgevonden]
gi|57161534|emb|CAH58461.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
Welgevonden]
gi|58418057|emb|CAI27261.1| Transcription-repair coupling factor [Ehrlichia ruminantium str.
Welgevonden]
Length = 1122
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +++ +G+G I +++ +V +F I + + L +PV I
Sbjct: 464 DLNIGDIVIHKDYGIGKIAKLETIKVLDNYHDFLKIEYYNND-KLFLPVENINLITRYSN 522
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ R+ T W +R + I ++ ++L R ++ +
Sbjct: 523 QDSNITL---------DRLGSTSWQQRQTKLKNH--------IQKIAKELIRIEAARQLM 565
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
L + E A + + +AI IE +LS
Sbjct: 566 QGTPFLPNNTYKNFCDEFAYTETTDQLQAIQDIENDLSGGK 606
>gi|256852011|ref|ZP_05557398.1| transcription-repair coupling factor [Lactobacillus jensenii
27-2-CHN]
gi|260661420|ref|ZP_05862333.1| transcription-repair coupling factor [Lactobacillus jensenii
115-3-CHN]
gi|282933683|ref|ZP_06339041.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
gi|256615423|gb|EEU20613.1| transcription-repair coupling factor [Lactobacillus jensenii
27-2-CHN]
gi|260547875|gb|EEX23852.1| transcription-repair coupling factor [Lactobacillus jensenii
115-3-CHN]
gi|281302173|gb|EFA94417.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
Length = 1162
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 489 DLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRD-YITITYQGHDQLFVPADQLSLVQKYVG 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE H + + + + + S ++++ +S+ +
Sbjct: 548 SEGHRPK------------VNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEKGYA 595
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + V + + + N I+ ++ +
Sbjct: 596 FSKDNDLQ---KEFEDAFPYVETPDQLRSSNEIKADMEKSKA 634
>gi|309807000|ref|ZP_07700982.1| transcription-repair coupling factor [Lactobacillus iners LactinV
03V1-b]
gi|308166620|gb|EFO68817.1| transcription-repair coupling factor [Lactobacillus iners LactinV
03V1-b]
Length = 1110
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEAAFPYLETPDQIKAIREIKLDMQKEKP 582
>gi|254247951|ref|ZP_04941272.1| Transcription-repair coupling factor [Burkholderia cenocepacia
PC184]
gi|124872727|gb|EAY64443.1| Transcription-repair coupling factor [Burkholderia cenocepacia
PC184]
Length = 1164
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + L VPV + I
Sbjct: 485 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLE-YSGDSKLYVPVAQLHVISR 543
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 544 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 587
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 588 AAREGHAFSLDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 633
>gi|297616314|ref|YP_003701473.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
DSM 12680]
gi|297144151|gb|ADI00908.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
DSM 12680]
Length = 1081
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 21/174 (12%)
Query: 6 KRDA-----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
K++ R G+++V+ HG+G I + EV G E+ VI + L +P
Sbjct: 411 KKETGKLRLELDHLRVGDYVVHENHGIGLFQGITKMEVEGFAKEYLVIQYAGSD-RLYLP 469
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V K + K + ++ ++ E++R
Sbjct: 470 VDKLEMLTRYTG------------PDDKEPRLSKLGGTDWEKTKNRVRESIREMAQELLR 517
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++S +++ + + A+ ++ ++ +
Sbjct: 518 VYALRQTVPGFAFSPDTVWQ---KEFEDAFEYEETADQIRAVAEVKKDMETPRP 568
>gi|119774467|ref|YP_927207.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
gi|119766967|gb|ABL99537.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
Length = 1155
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG ++ + G+ E+ + + L VPV I R
Sbjct: 480 ELKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGD-KLYVPVSALHLI-SRFA 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+R E +K + I +V +L ++ E
Sbjct: 538 VGNDESAPL---------------NRLGNESWSKAKRKAIEKIRDVAAELLDVYARREAR 582
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A + + ++ + AI + ++ +
Sbjct: 583 PGDPCTLDEAEYAQFAQGFPFEETVDQETAIKAVIDDMCQPKA 625
>gi|319943635|ref|ZP_08017916.1| transcription-repair coupling factor [Lautropia mirabilis ATCC
51599]
gi|319742868|gb|EFV95274.1| transcription-repair coupling factor [Lautropia mirabilis ATCC
51599]
Length = 1264
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF +++ L VPV IG
Sbjct: 562 DLSELKPGDPVVHAQHGIGRYMGLVNIDLGEGAAEFLHLSYAN-DATLYVPVAMLHLIGR 620
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ L + K + +L ++
Sbjct: 621 YSGAAPE--NAPLHTLGSGQ--------------WDKARRKAAEKARDTAVELLDLYARR 664
Query: 130 EKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ A + + AI+ + +L +
Sbjct: 665 AARPGHAFKFDPAGYAAFAEGFGFEETPDQQAAIHAVVQDLIAPKP 710
>gi|315640551|ref|ZP_07895659.1| transcription-repair coupling factor [Enterococcus italicus DSM
15952]
gi|315483755|gb|EFU74243.1| transcription-repair coupling factor [Enterococcus italicus DSM
15952]
Length = 1179
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 495 ELKTGDYVVHENHGIGKYIGMETLEVDGVHQDYL-TIIYQNDDKLFIPVTQLNMIQKYVA 553
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE K+ + + K++ ++++ + +++ +
Sbjct: 554 SEL------------KSPRINKLGGSEWTKTKRKVSGKIEDIADDLIQLYAQREAEKGFA 601
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + + I+ ++ +
Sbjct: 602 FGPDDGYQ---KEFEDAFPYSETEDQLRSTSEIKKDMEKEKP 640
>gi|304385533|ref|ZP_07367877.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
20284]
gi|304328037|gb|EFL95259.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
20284]
Length = 1165
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G + EV G+ ++ + L +PV + +
Sbjct: 493 TELKPGDFVVHVNHGIGKYLGMTTMEVDGVHQDYL-TIQYQGSGQLFIPVTQLNLVQKYV 551
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK + + + S +++ + +++
Sbjct: 552 AAE------------GKRPKINRLGGSDWAKTKQHVASKIEDIADDLIELYAKREAEKGF 599
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + +I ++ ++
Sbjct: 600 AFPPDDDLQL---QFENDFPYTETPDQLRSIKEVKEDMEKPRP 639
>gi|114777171|ref|ZP_01452182.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
PV-1]
gi|114552316|gb|EAU54799.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
PV-1]
Length = 1109
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 15/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G+ +V+ HGVG ++ + G +F I + K + VPV + +
Sbjct: 440 SSLAELKPGDPVVHEDHGVGRYHGLETIDEDGDLADFIKIEYAD-KAHVFVPVEELARLH 498
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
A + S + + ++ L E++ S
Sbjct: 499 RYTG--------------EDAPALNKLGSEKWKRTRERVKRDLLAMAHELIDIEAARTSA 544
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + +AI+ + +L+
Sbjct: 545 SRPPCLLQGPLLDAYEEFAARFPFEETDDQAQAIDAVLTDLALDKP 590
>gi|270290199|ref|ZP_06196425.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
gi|270281736|gb|EFA27568.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
Length = 1165
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+G + EV G+ ++ + L +PV + +
Sbjct: 493 TELKPGDFVVHVNHGIGKYLGMTTMEVDGVHQDYL-TIQYQGSGQLFIPVTQLNLVQKYV 551
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E GK + + + S +++ + +++
Sbjct: 552 AAE------------GKRPKINRLGGSDWAKTKQHVASKIEDIADDLIELYAKREAEKGF 599
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + +I ++ ++
Sbjct: 600 AFPPDDDLQL---QFENDFPYTETPDQLRSIKEVKEDMEKPRP 639
>gi|297205117|ref|ZP_06922513.1| transcription-repair coupling factor [Lactobacillus jensenii
JV-V16]
gi|297149695|gb|EFH29992.1| transcription-repair coupling factor [Lactobacillus jensenii
JV-V16]
Length = 1162
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK +V G K + ++ + L VP + +
Sbjct: 489 DLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRD-YITITYQGHDQLFVPADQLSLVQKYVG 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE H + + + + + S ++++ +S+ +
Sbjct: 548 SEGHRPK------------VNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEKGYA 595
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + V + + + N I+ ++ +
Sbjct: 596 FSKDNDLQ---KEFEDAFPYVETPDQLRSSNEIKADMEKSKA 634
>gi|78485512|ref|YP_391437.1| transcription-repair coupling factor [Thiomicrospira crunogena
XCL-2]
gi|78363798|gb|ABB41763.1| transcription-repair coupling factor [Thiomicrospira crunogena
XCL-2]
Length = 1159
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++++ + G+ IV+ HGVG ++ + G + EF +I +
Sbjct: 472 RRKRKHSEFDNAISNLIELDLGQPIVHFDHGVGRFLGLETMTIQGEEHEFLMIQYAG-DA 530
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV I + A + S + + K
Sbjct: 531 KLYVPVTSLHLISRYTGASAETAP------------LHKLGSDKWDKAKRKAAEKVRDVA 578
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++P ++ E A R + + AI + ++ S
Sbjct: 579 AELLDIYAQREARPGYAFQTD---EEAYARFRAGFPFEETPDQEAAIEAVLSDMKSDKP 634
>gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87]
gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87]
Length = 1169
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E +SA + + + ++I I+ ++ +
Sbjct: 596 MSVGYQYGEDTAEQSA---FEHDFPYELTPDQGKSIEEIKGDMERERP 640
>gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
Length = 1169
Score = 98.7 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E +SA + + + ++I I+ ++ +
Sbjct: 596 MSVGYQYGEDTAEQSA---FEHDFPYELTPDQGKSIEEIKGDMERERP 640
>gi|312874291|ref|ZP_07734323.1| transcription-repair coupling factor [Lactobacillus iners LEAF
2052A-d]
gi|311090164|gb|EFQ48576.1| transcription-repair coupling factor [Lactobacillus iners LEAF
2052A-d]
Length = 1110
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGKKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEAAFPYLETPDQIKAIREIKLDMQKEKP 582
>gi|206560380|ref|YP_002231144.1| transcription-repair coupling factor [Burkholderia cenocepacia
J2315]
gi|198036421|emb|CAR52317.1| transcription-repair coupling factor [Burkholderia cenocepacia
J2315]
Length = 1164
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + L VPV + I
Sbjct: 485 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLE-YSGDSKLYVPVAQLHVISR 543
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 544 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 587
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 588 AAREGHAFSLDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 633
>gi|107028877|ref|YP_625972.1| transcription-repair coupling factor [Burkholderia cenocepacia AU
1054]
gi|116689965|ref|YP_835588.1| transcription-repair coupling factor [Burkholderia cenocepacia
HI2424]
gi|105898041|gb|ABF80999.1| transcription-repair coupling factor [Burkholderia cenocepacia AU
1054]
gi|116648054|gb|ABK08695.1| transcription-repair coupling factor [Burkholderia cenocepacia
HI2424]
Length = 1156
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLE-YSGDSKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 580 AAREGHAFSLDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|170733304|ref|YP_001765251.1| transcription-repair coupling factor [Burkholderia cenocepacia
MC0-3]
gi|169816546|gb|ACA91129.1| transcription-repair coupling factor [Burkholderia cenocepacia
MC0-3]
Length = 1156
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLE-YSGDSKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 580 AAREGHAFSLDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|205371994|ref|ZP_03224812.1| transcription-repair coupling factor [Bacillus coahuilensis m4-4]
Length = 1181
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ + G ++ + + L VPV + +
Sbjct: 496 SELKVGDYVVHVNHGIGKYLGIETLMINGAHKDYLHL-RYQGTDKLYVPVEQIDLVQKYV 554
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + + K+ S ++++ ++
Sbjct: 555 ASE------------GKEPKLYKLGGSEWAKVKRKVESSVQDIADDLIKLYAEREAAVGY 602
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + +I I+ ++
Sbjct: 603 AFNPDGEMQR---EFESLFPYQETEDQTRSIQEIKRDMEKSRP 642
>gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens
SM101]
gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens
SM101]
Length = 1162
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ G+G IK+ EV G K ++ I L VPV +
Sbjct: 488 KIKSFAELKPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIE-YSKGDKLYVPVEQLDL 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S++ + + + G Q+ AK+ ++V+
Sbjct: 547 VQKYIGSDSASPK--ISKLGGNE----------WQKAKAKVRKSINDIAGDLVKLYAERS 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S+ ++ + E + + AI I+ ++ S
Sbjct: 595 TVKGYKFSKDTQWQ---KQFEDEFPYEETPDQLAAIEDIKSDMESNK 638
>gi|259500996|ref|ZP_05743898.1| transcription-repair-coupling factor [Lactobacillus iners DSM
13335]
gi|302190555|ref|ZP_07266809.1| transcription-repair coupling factor [Lactobacillus iners AB-1]
gi|259167690|gb|EEW52185.1| transcription-repair-coupling factor [Lactobacillus iners DSM
13335]
Length = 1110
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HG+G IK E G K + ++ ++ L VP +
Sbjct: 431 QIRSYQELNPGDYVVHINHGIGIFEGIKTLESNGQKGD-YITITYRNHDQLFVPADQLGV 489
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GK + + ++ E++
Sbjct: 490 VQKYVAS------------DGKIPKINKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRA 537
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + + +AI I++++ +
Sbjct: 538 TEKGFAFLPDDELQR---DFEAAFPYLETPDQIKAIREIKLDMQKEKP 582
>gi|314982388|gb|EFT26481.1| transcription-repair coupling factor [Propionibacterium acnes
HL110PA3]
gi|315092571|gb|EFT64547.1| transcription-repair coupling factor [Propionibacterium acnes
HL110PA4]
Length = 1208
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ E+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIATELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEDAFAYVETPDQLTTIADVKRDMEQVVP 671
>gi|300172731|ref|YP_003771896.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
18811]
gi|299887109|emb|CBL91077.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
18811]
Length = 1172
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 20/177 (11%)
Query: 3 FQQKRDAMR----QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++ +A R G+++V+ HG+G ++ V G K ++ + +
Sbjct: 476 QRKINNAERLKSYSELNVGDYVVHINHGIGRYEGLQTMTVDGGKQDYL-SIAYQKNAKIF 534
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+PV + I + L + G AK I ++
Sbjct: 535 IPVTQLNLIQKYIGASDAAKAPKLNKLGGVE--------------WAKTKRQVAAKIEDI 580
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL ++ E + + + +I I+V++
Sbjct: 581 ADDLLELYAKREAQQGYAFPPDDTEQLKFDMAFGYPETPDQIRSIEEIKVDMQKVRP 637
>gi|251781475|ref|YP_002995776.1| putative transcription-repair coupling factor [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390103|dbj|BAH80562.1| putative transcription-repair coupling factor [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 1166
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQISSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|327463840|gb|EGF10156.1| transcription-repair coupling factor [Streptococcus sanguinis
SK1057]
Length = 1167
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYM-TIQYQNSDRISIPVDQIDLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKSKKKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|313792864|gb|EFS40931.1| transcription-repair coupling factor [Propionibacterium acnes
HL110PA1]
gi|313802684|gb|EFS43906.1| transcription-repair coupling factor [Propionibacterium acnes
HL110PA2]
gi|313840319|gb|EFS78033.1| transcription-repair coupling factor [Propionibacterium acnes
HL086PA1]
gi|314964282|gb|EFT08382.1| transcription-repair coupling factor [Propionibacterium acnes
HL082PA1]
gi|315078702|gb|EFT50733.1| transcription-repair coupling factor [Propionibacterium acnes
HL053PA2]
gi|315081837|gb|EFT53813.1| transcription-repair coupling factor [Propionibacterium acnes
HL078PA1]
gi|327456823|gb|EGF03478.1| transcription-repair coupling factor [Propionibacterium acnes
HL092PA1]
Length = 1208
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTIADVKRDMEQVVP 671
>gi|289428412|ref|ZP_06430098.1| transcription-repair coupling factor [Propionibacterium acnes J165]
gi|289158384|gb|EFD06601.1| transcription-repair coupling factor [Propionibacterium acnes J165]
Length = 1198
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 506 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 556
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 557 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 616
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 617 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTIADVKRDMEQVVP 661
>gi|332674949|gb|AEE71765.1| transcription-repair-coupling factor [Propionibacterium acnes 266]
Length = 1222
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 530 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 580
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 581 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 640
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 641 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTIADVKRDMEQVVP 685
>gi|314987497|gb|EFT31588.1| transcription-repair coupling factor [Propionibacterium acnes
HL005PA2]
gi|314989037|gb|EFT33128.1| transcription-repair coupling factor [Propionibacterium acnes
HL005PA3]
gi|315082669|gb|EFT54645.1| transcription-repair coupling factor [Propionibacterium acnes
HL027PA2]
gi|328758609|gb|EGF72225.1| transcription-repair coupling factor [Propionibacterium acnes
HL020PA1]
Length = 1208
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTIADVKRDMEQVVP 671
>gi|314969382|gb|EFT13480.1| transcription-repair coupling factor [Propionibacterium acnes
HL037PA1]
Length = 1208
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTIADVKRDMEQVVP 671
>gi|314926804|gb|EFS90635.1| transcription-repair coupling factor [Propionibacterium acnes
HL036PA3]
Length = 1208
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTIADVKRDMEQVVP 671
>gi|313765341|gb|EFS36705.1| transcription-repair coupling factor [Propionibacterium acnes
HL013PA1]
gi|313806696|gb|EFS45203.1| transcription-repair coupling factor [Propionibacterium acnes
HL087PA2]
gi|313814596|gb|EFS52310.1| transcription-repair coupling factor [Propionibacterium acnes
HL025PA1]
gi|313815252|gb|EFS52966.1| transcription-repair coupling factor [Propionibacterium acnes
HL059PA1]
gi|313817239|gb|EFS54953.1| transcription-repair coupling factor [Propionibacterium acnes
HL046PA2]
gi|313821699|gb|EFS59413.1| transcription-repair coupling factor [Propionibacterium acnes
HL036PA1]
gi|313824410|gb|EFS62124.1| transcription-repair coupling factor [Propionibacterium acnes
HL036PA2]
gi|313826767|gb|EFS64481.1| transcription-repair coupling factor [Propionibacterium acnes
HL063PA1]
gi|313828557|gb|EFS66271.1| transcription-repair coupling factor [Propionibacterium acnes
HL063PA2]
gi|314916016|gb|EFS79847.1| transcription-repair coupling factor [Propionibacterium acnes
HL005PA4]
gi|314916921|gb|EFS80752.1| transcription-repair coupling factor [Propionibacterium acnes
HL050PA1]
gi|314921562|gb|EFS85393.1| transcription-repair coupling factor [Propionibacterium acnes
HL050PA3]
gi|314931114|gb|EFS94945.1| transcription-repair coupling factor [Propionibacterium acnes
HL067PA1]
gi|314954829|gb|EFS99235.1| transcription-repair coupling factor [Propionibacterium acnes
HL027PA1]
gi|314958995|gb|EFT03097.1| transcription-repair coupling factor [Propionibacterium acnes
HL002PA1]
gi|314961290|gb|EFT05391.1| transcription-repair coupling factor [Propionibacterium acnes
HL002PA2]
gi|314980484|gb|EFT24578.1| transcription-repair coupling factor [Propionibacterium acnes
HL072PA2]
gi|315086378|gb|EFT58354.1| transcription-repair coupling factor [Propionibacterium acnes
HL002PA3]
gi|315087626|gb|EFT59602.1| transcription-repair coupling factor [Propionibacterium acnes
HL072PA1]
gi|315099738|gb|EFT71714.1| transcription-repair coupling factor [Propionibacterium acnes
HL059PA2]
gi|315101957|gb|EFT73933.1| transcription-repair coupling factor [Propionibacterium acnes
HL046PA1]
gi|315106536|gb|EFT78512.1| transcription-repair coupling factor [Propionibacterium acnes
HL030PA1]
gi|315110324|gb|EFT82300.1| transcription-repair coupling factor [Propionibacterium acnes
HL030PA2]
gi|327333610|gb|EGE75330.1| transcription-repair coupling factor [Propionibacterium acnes
HL096PA3]
gi|327445362|gb|EGE92016.1| transcription-repair coupling factor [Propionibacterium acnes
HL013PA2]
gi|327454831|gb|EGF01486.1| transcription-repair coupling factor [Propionibacterium acnes
HL087PA3]
gi|327455689|gb|EGF02344.1| transcription-repair coupling factor [Propionibacterium acnes
HL083PA2]
gi|328755887|gb|EGF69503.1| transcription-repair coupling factor [Propionibacterium acnes
HL087PA1]
gi|328756670|gb|EGF70286.1| transcription-repair coupling factor [Propionibacterium acnes
HL025PA2]
Length = 1208
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTIADVKRDMEQVVP 671
>gi|50842025|ref|YP_055252.1| transcription-repair coupling factor [Propionibacterium acnes
KPA171202]
gi|50839627|gb|AAT82294.1| transcription-repair coupling factor [Propionibacterium acnes
KPA171202]
Length = 1222
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 530 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 580
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 581 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 640
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 641 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTIADVKRDMEQVVP 685
>gi|291539572|emb|CBL12683.1| Transcriptional regulators, similar to M. xanthus CarD [Roseburia
intestinalis XB6B4]
Length = 175
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIG 68
R+ F GE++V A GV I +I +++G E ++V+A DK + I
Sbjct: 9 RRMFEIGEYVVCGAKGVCQIRDITHIDMSGADKEKLYYVLAPVGDKNGTIYVPTDSEKII 68
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
MR+ ER + + + +R + Y + + D A +V+ L++ +
Sbjct: 69 MRRTISKEEAERLIDELPQIELLWVPDDKQREETYKEALRTCDYHAWVSIVKTLYQRKKE 128
Query: 129 -----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ + + + ++A N + E++ + + + I LS
Sbjct: 129 RLAQGKKATAVDERYMKAAENGLYGELSLTLGVPREKMEDYIRERLS 175
>gi|123442012|ref|YP_001005995.1| transcription-repair coupling factor [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122088973|emb|CAL11784.1| transcription-repair coupling factor [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 1148
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I
Sbjct: 476 ELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLISRYSG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A ++ + +V +L +Q
Sbjct: 535 GADE--NAPLHKLGGDA--------------WSRARQKAAEKVRDVAAELLDIYAQRAAK 578
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + + +AIN + ++ +
Sbjct: 579 SGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLA 621
>gi|182677886|ref|YP_001832032.1| transcription-repair coupling factor [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182633769|gb|ACB94543.1| transcription-repair coupling factor [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 1173
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 54/166 (32%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G+ +V+ HG+G ++ E AG++ + + L +PV +
Sbjct: 497 SEVASLQAGDLVVHVEHGIGRFIGLQTIEAAGVRHDCL-ELHYAEGTKLFLPVENLELLS 555
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q+ A++ L + +++ +++
Sbjct: 556 RY---GSEESDVPLDRLGGGA----------WQKRKARMRRHILEMASGLIKVAAARETR 602
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + I+ + +LSS
Sbjct: 603 EAPKLVPPEGL---YAEFCSGFPYEETEDQQATIDSVLEDLSSGKP 645
>gi|78066724|ref|YP_369493.1| transcription-repair coupling factor [Burkholderia sp. 383]
gi|77967469|gb|ABB08849.1| transcription-repair coupling factor [Burkholderia sp. 383]
Length = 1156
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + EF + L VPV + I
Sbjct: 477 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLE-YSGDSKLYVPVAQLHVISR 535
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 536 YSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 579
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 580 AAREGHAFSLDPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 625
>gi|300087739|ref|YP_003758261.1| transcription-repair coupling factor [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527472|gb|ADJ25940.1| transcription-repair coupling factor [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 1148
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 58/179 (32%), Gaps = 21/179 (11%)
Query: 1 MTFQQK-----RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
+ Q++ + GE+IV+ HG+G I + + AG ++ +I
Sbjct: 462 IPRQRRLPSVAKTPHVSDLSKGEYIVHVEHGIGIYRGIVKTKAAGSVSDYILIE-YSKGD 520
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I + GK T+ S +
Sbjct: 521 RLYVPVDQIGRISQYIGAT------------GKNPKLNTLGSEDWNRAKRTAENAADEIA 568
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E ++ + YSE +++ + + + +AI+ I+ ++
Sbjct: 569 EEFLQLYAARHAAVGFQYSEDTIWQR---ELEDSFPYTETSDQLQAIDEIKKDMEQPQP 624
>gi|227528907|ref|ZP_03958956.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
49540]
gi|227351181|gb|EEJ41472.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
49540]
Length = 1170
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G + I+ EV G+ ++ VI ++ + VPV + +
Sbjct: 496 DLKPGDYVVHVNHGIGIFSGIRTMEVDGVHQDYMVIN-YRNNAQIFVPVTQLNLVQKYVS 554
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E K + + ++ S E+V + +++ +
Sbjct: 555 AE------------SKTPHINKLGGNEWAKTKRRVASKVEDIADELVDLYAKRETEKGYA 602
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + +I I+ ++
Sbjct: 603 FPKDDYLQ---KQFDANFPYSETRDQLRSIAEIKEDMEKAKP 641
>gi|327335135|gb|EGE76846.1| transcription-repair coupling factor [Propionibacterium acnes
HL097PA1]
Length = 1208
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEDAFAYVETPDQLTTIADVKRDMEQVVP 671
>gi|315104557|gb|EFT76533.1| transcription-repair coupling factor [Propionibacterium acnes
HL050PA2]
Length = 1208
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEDAFAYVETPDQLTTIADVKRDMEQVVP 671
>gi|314922168|gb|EFS85999.1| transcription-repair coupling factor [Propionibacterium acnes
HL001PA1]
gi|314965251|gb|EFT09350.1| transcription-repair coupling factor [Propionibacterium acnes
HL082PA2]
gi|315094011|gb|EFT65987.1| transcription-repair coupling factor [Propionibacterium acnes
HL060PA1]
gi|327329541|gb|EGE71301.1| transcription-repair coupling factor [Propionibacterium acnes
HL103PA1]
Length = 1208
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEDAFAYVETPDQLTTIADVKRDMEQVVP 671
>gi|304310931|ref|YP_003810529.1| Transcription repair coupling factor [gamma proteobacterium HdN1]
gi|301796664|emb|CBL44876.1| Transcription repair coupling factor [gamma proteobacterium HdN1]
Length = 1162
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 28/185 (15%)
Query: 1 MTFQQKRDAM----------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50
M ++++ + + G +V+ HGVG ++ + G EF + +
Sbjct: 462 MQVRRRKRSDDGSGDQIIKNLTELKIGAPVVHIEHGVGRYHGLQTLTIDGQAQEFLTLEY 521
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
L VPV I S A L + E AK
Sbjct: 522 AG-GSKLYVPVASLQLISRY--SGAEDSSAPLHRLGT--------------EQWAKEKRK 564
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNL 169
+ +V +L ++ A V + + AI + ++
Sbjct: 565 AQEQVHDVAAELLNIYARRAAKAGYAFKLGKADYQAFVDGFRFEETPDQESAIQAVMADM 624
Query: 170 SSKSS 174
+S
Sbjct: 625 TSPRP 629
>gi|254469399|ref|ZP_05082804.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
gi|211961234|gb|EEA96429.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
Length = 1162
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 23/178 (12%)
Query: 3 FQQKRD------AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++++ G+ +V+ HG+G +K E G + + +
Sbjct: 476 QRRRKSKGANVLTEASALSPGDLVVHVEHGIGRFIGLKTIEAVGAPHDCLELQYAGSD-K 534
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L +PV + + E L + G A Q AK+ L
Sbjct: 535 LYLPVENIELLTRY---GSEDQEVQLDKLGGGA----------WQARKAKMKKRILEIAD 581
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + E A + + + AI + +++S
Sbjct: 582 GLIKIAAERALRTAPAIT---APEGAYDEFAARFVYDETDDQMTAIESVFDDMASGRP 636
>gi|114768783|ref|ZP_01446409.1| transcription-repair coupling factor [alpha proteobacterium
HTCC2255]
gi|114549700|gb|EAU52581.1| transcription-repair coupling factor [alpha proteobacterium
HTCC2255]
Length = 1151
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 25/178 (14%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +++R G+ +V+ HGVG ++ + AG + ++ + + L
Sbjct: 464 TNKKRRAKDFLTEASSLSVGDLVVHVDHGVGRYRGLETVKAAGAPHDCLLLEYANND-RL 522
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + L + G A + I E
Sbjct: 523 YLPVENVELLSRY-----GHETGLLDRLGGSA--------------WQAKKAKLKERIRE 563
Query: 118 VVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L R ++ SE ++ N V + + AI + ++SS
Sbjct: 564 MADKLLRIAAERSLRKSEILEVSPDKWNAFCARFPYVETDDQLNAIEDVVSDMSSGKP 621
>gi|330817293|ref|YP_004360998.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3]
gi|327369686|gb|AEA61042.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3]
Length = 1156
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + + L VPV + I
Sbjct: 476 DLSELKVGDPVVHTQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-ESKLYVPVSQLHVISR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 535 YSGADPDSAP--LHSLGSGQ--------------WERAKRKAAQQIRDTAAELLNLYARR 578
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +++S
Sbjct: 579 AAREGHAFALEPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKP 624
>gi|85858740|ref|YP_460942.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
gi|85721831|gb|ABC76774.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
Length = 1202
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G +++ V G++ +F +I + L +P+ + I
Sbjct: 539 DLKEGDYVVHKEHGIGLYQGLQKLSVGGIENDFLLIN-YQSGDKLYLPIDRLDQISRYIG 597
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E V ++ T W ++ E+V + +S
Sbjct: 598 PEG--------YVPKVDKLGGTSWDT----VRERVKKSIQEVAEELVAIYAAREVMERRS 645
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + AI I +++S
Sbjct: 646 FA---PPDAVYEEFSAAFPYDETPDQARAIEDIHADMNSAKP 684
>gi|288958061|ref|YP_003448402.1| transcription-repair coupling factor superfamily II helicase
[Azospirillum sp. B510]
gi|288910369|dbj|BAI71858.1| transcription-repair coupling factor superfamily II helicase
[Azospirillum sp. B510]
Length = 1171
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ A G+ +V+ HG+G ++ +V G + I ++ L
Sbjct: 440 AKKKRKAANFIAEHSALHEGDIVVHMDHGIGRYDGLETLDVTGAPHDCLRIIYEGGD-KL 498
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + E A + R ++ + +
Sbjct: 499 YVPVENIEVLSRY------GSEDANVQLDKLGGAGWQGRKARVKK-----------RLKD 541
Query: 118 VVRDLHRTDSQPEKSYSERQL-YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L + ++ ++ L E + + +AI I +L S
Sbjct: 542 MAEALLKIAAERMLKKADPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRP 599
>gi|37523406|ref|NP_926783.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
7421]
gi|35214410|dbj|BAC91778.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
7421]
Length = 1154
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 62/175 (35%), Gaps = 21/175 (12%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + G+ +V+ +HG+G ++++ V+G E+ VI + L+V
Sbjct: 473 KRRRAASKQIDLDKLNPGDFVVHRSHGIGRFAKLEKLTVSGSAREYLVIEYA--DGILRV 530
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + + G M S+ ++ K+ +++
Sbjct: 531 AADQMNSLSRYRST-------------GGTVQLSRMGSKSWEKTKQKVKKAIQKIAFDLL 577
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R + + Q ++ + + + AI +++++ S+
Sbjct: 578 DLYARRAQESRIPFPPDQPWQREME---ESFPYPLTPDQARAIQEVKIDMESERP 629
>gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus
ATCC 12755]
gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus
ATCC 12755]
Length = 1172
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+TG+++V+ HG+G ++ EV G+ ++ +++ L +PV + I
Sbjct: 495 ELKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNEDKLFIPVTQLNLIQKYVA 553
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE+ + + + G AK I ++ DL ++ E
Sbjct: 554 SESKTPK--INKLGGSE--------------WAKTKRKVTAKIEDIADDLILLYAKRESE 597
Query: 133 YSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++ +
Sbjct: 598 KGYAFQPDDAYQKEFEDAFPYSETDDQLRSTAEIKRDMEKEKP 640
>gi|332162083|ref|YP_004298660.1| transcription-repair coupling factor [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325666313|gb|ADZ42957.1| transcription-repair coupling factor [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 1148
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I
Sbjct: 476 ELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLISRYSG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A ++ + +V +L +Q
Sbjct: 535 GADE--NAPLHKLGGDA--------------WSRARQKAAEKVRDVAAELLDIYAQRAAK 578
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + + +AIN + ++ +
Sbjct: 579 SGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLA 621
>gi|315180610|gb|ADT87524.1| transcription-repair coupling factor [Vibrio furnissii NCTC 11218]
Length = 1125
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 28/183 (15%)
Query: 3 FQQKRDAM----------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
++K++ + G+ +V+ HG+G ++ E GM E +V +
Sbjct: 431 QRRKKERKVTNSDAVIRNLAELKPGQPVVHIDHGIGRYVGLQTLEAGGMTTE-YVTLEYQ 489
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VPV I L + G+A K
Sbjct: 490 NDAKLYVPVSSLNLISRYSGGAEESAP--LHKLGGEA--------------WVKARRKAA 533
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +V +L ++ E + + + + AIN + ++
Sbjct: 534 EKVRDVAAELLDVYAKRELKPGYKFQLDRDQYATFKSGFPFEETDDQAMAINAVMSDMCQ 593
Query: 172 KSS 174
+
Sbjct: 594 PKA 596
>gi|297584628|ref|YP_003700408.1| CarD family transcriptional regulator [Bacillus selenitireducens
MLS10]
gi|297143085|gb|ADH99842.1| transcriptional regulator, CarD family [Bacillus selenitireducens
MLS10]
Length = 164
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG G + +I+E+E+ G KL +FV+ F +++ L +P K + G+R +
Sbjct: 1 MFSIGDCVVYPYHGAGRVEKIEEKEILGNKLLYFVVYFPLNQVTLMLPENKIGESGLRPV 60
Query: 73 SEAHFVERALKLVRG--KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
++ ++ + +AR ++E +A + +G + A V+ L+ S+
Sbjct: 61 ITKKELDDVVESLCEEVEARETAATAKPYSRENEALLKTGSIYDAARVISLLNAKKSERA 120
Query: 131 --KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+R+ E A +V E+ +N SE +A I+ N+
Sbjct: 121 NGLHIEDRKNLERATQFLVSEVKNINGFSEEDAKLFIKNNI 161
>gi|126453184|ref|YP_001066662.1| transcription-repair coupling factor [Burkholderia pseudomallei
1106a]
gi|167846208|ref|ZP_02471716.1| transcription-repair coupling factor [Burkholderia pseudomallei
B7210]
gi|167911421|ref|ZP_02498512.1| transcription-repair coupling factor [Burkholderia pseudomallei
112]
gi|242317637|ref|ZP_04816653.1| transcription-repair coupling factor [Burkholderia pseudomallei
1106b]
gi|254198050|ref|ZP_04904472.1| transcription-repair coupling factor [Burkholderia pseudomallei
S13]
gi|126226826|gb|ABN90366.1| transcription-repair coupling factor [Burkholderia pseudomallei
1106a]
gi|169654791|gb|EDS87484.1| transcription-repair coupling factor [Burkholderia pseudomallei
S13]
gi|242140876|gb|EES27278.1| transcription-repair coupling factor [Burkholderia pseudomallei
1106b]
Length = 1189
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 508 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 566
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 567 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 610
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 611 AAREGHAFGLDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 656
>gi|318606131|emb|CBY27629.1| transcription-repair coupling factor [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 1148
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I
Sbjct: 476 ELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLISRYSG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A ++ + +V +L +Q
Sbjct: 535 GADE--NAPLHKLGGDA--------------WSRARQKVAEKVRDVAAELLDIYAQRTAK 578
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + + +AIN + ++ +
Sbjct: 579 SGFKFKFDREQYQLFCQSFPFETTPDQEQAINAVLSDMCRPLA 621
>gi|217421496|ref|ZP_03453000.1| transcription-repair coupling factor [Burkholderia pseudomallei
576]
gi|217395238|gb|EEC35256.1| transcription-repair coupling factor [Burkholderia pseudomallei
576]
Length = 1189
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 508 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 566
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 567 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 610
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 611 AAREGHAFGLDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 656
>gi|124385069|ref|YP_001029254.1| transcription-repair coupling factor [Burkholderia mallei NCTC
10229]
gi|126448727|ref|YP_001080811.1| transcription-repair coupling factor [Burkholderia mallei NCTC
10247]
gi|167919435|ref|ZP_02506526.1| transcription-repair coupling factor [Burkholderia pseudomallei
BCC215]
gi|238562222|ref|ZP_00440803.2| transcription-repair coupling factor [Burkholderia mallei GB8 horse
4]
gi|251766640|ref|ZP_02264525.2| transcription-repair coupling factor [Burkholderia mallei PRL-20]
gi|254178318|ref|ZP_04884973.1| transcription-repair coupling factor [Burkholderia mallei ATCC
10399]
gi|254200090|ref|ZP_04906456.1| transcription-repair coupling factor [Burkholderia mallei FMH]
gi|254206426|ref|ZP_04912778.1| transcription-repair coupling factor [Burkholderia mallei JHU]
gi|254297281|ref|ZP_04964734.1| transcription-repair coupling factor [Burkholderia pseudomallei
406e]
gi|254358165|ref|ZP_04974438.1| transcription-repair coupling factor [Burkholderia mallei
2002721280]
gi|124293089|gb|ABN02358.1| transcription-repair coupling factor [Burkholderia mallei NCTC
10229]
gi|126241597|gb|ABO04690.1| transcription-repair coupling factor [Burkholderia mallei NCTC
10247]
gi|147749686|gb|EDK56760.1| transcription-repair coupling factor [Burkholderia mallei FMH]
gi|147753869|gb|EDK60934.1| transcription-repair coupling factor [Burkholderia mallei JHU]
gi|148027292|gb|EDK85313.1| transcription-repair coupling factor [Burkholderia mallei
2002721280]
gi|157807451|gb|EDO84621.1| transcription-repair coupling factor [Burkholderia pseudomallei
406e]
gi|160699357|gb|EDP89327.1| transcription-repair coupling factor [Burkholderia mallei ATCC
10399]
gi|238523096|gb|EEP86537.1| transcription-repair coupling factor [Burkholderia mallei GB8 horse
4]
gi|243065028|gb|EES47214.1| transcription-repair coupling factor [Burkholderia mallei PRL-20]
Length = 1189
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 508 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 566
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 567 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 610
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 611 AAREGHAFGLDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 656
>gi|53719711|ref|YP_108697.1| transcription-repair coupling factor [Burkholderia pseudomallei
K96243]
gi|76810493|ref|YP_333905.1| transcription-repair coupling factor [Burkholderia pseudomallei
1710b]
gi|126438362|ref|YP_001059391.1| transcription-repair coupling factor [Burkholderia pseudomallei
668]
gi|134277056|ref|ZP_01763771.1| transcription-repair coupling factor [Burkholderia pseudomallei
305]
gi|167720072|ref|ZP_02403308.1| transcription-repair coupling factor [Burkholderia pseudomallei
DM98]
gi|167739084|ref|ZP_02411858.1| transcription-repair coupling factor [Burkholderia pseudomallei 14]
gi|167824679|ref|ZP_02456150.1| transcription-repair coupling factor [Burkholderia pseudomallei 9]
gi|167903188|ref|ZP_02490393.1| transcription-repair coupling factor [Burkholderia pseudomallei
NCTC 13177]
gi|226196247|ref|ZP_03791831.1| transcription-repair coupling factor [Burkholderia pseudomallei
Pakistan 9]
gi|237812718|ref|YP_002897169.1| transcription-repair coupling factor [Burkholderia pseudomallei
MSHR346]
gi|254179398|ref|ZP_04885997.1| transcription-repair coupling factor [Burkholderia pseudomallei
1655]
gi|254189215|ref|ZP_04895726.1| transcription-repair coupling factor [Burkholderia pseudomallei
Pasteur 52237]
gi|254258111|ref|ZP_04949165.1| transcription-repair coupling factor [Burkholderia pseudomallei
1710a]
gi|52210125|emb|CAH36103.1| transcription-repair coupling factor [Burkholderia pseudomallei
K96243]
gi|76579946|gb|ABA49421.1| transcription-repair coupling factor [Burkholderia pseudomallei
1710b]
gi|126217855|gb|ABN81361.1| transcription-repair coupling factor [Burkholderia pseudomallei
668]
gi|134250706|gb|EBA50785.1| transcription-repair coupling factor [Burkholderia pseudomallei
305]
gi|157936894|gb|EDO92564.1| transcription-repair coupling factor [Burkholderia pseudomallei
Pasteur 52237]
gi|184209938|gb|EDU06981.1| transcription-repair coupling factor [Burkholderia pseudomallei
1655]
gi|225931703|gb|EEH27706.1| transcription-repair coupling factor [Burkholderia pseudomallei
Pakistan 9]
gi|237506667|gb|ACQ98985.1| transcription-repair coupling factor [Burkholderia pseudomallei
MSHR346]
gi|254216800|gb|EET06184.1| transcription-repair coupling factor [Burkholderia pseudomallei
1710a]
Length = 1189
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 508 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 566
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 567 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 610
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 611 AAREGHAFGLDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 656
>gi|13470979|ref|NP_102548.1| transcription repair coupling factor [Mesorhizobium loti
MAFF303099]
gi|14021722|dbj|BAB48334.1| transcription repair coupling factor [Mesorhizobium loti
MAFF303099]
Length = 1165
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 21/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KR + TG+ +V+ HG+G ++ E G + I + L
Sbjct: 480 SKRKKRASDFIAEASALSTGDIVVHADHGIGRFIGLRTIEAVGAPHDCLEIHYAG-DDRL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + E L + G A Q AK+ L +
Sbjct: 539 FLPVENIELLSRY---GSDSAEATLDKLGGGA----------WQSRKAKLKRRLLDMAGQ 585
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + + + AI+ + +L +
Sbjct: 586 LIRIAAERQMRAAPALVPAEGL---YDEFAARFPYEETDDQQTAIDSVRDDLGAGKP 639
>gi|251779351|ref|ZP_04822271.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243083666|gb|EES49556.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 1167
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 16/161 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK+ +V+G K ++ L VPV + I
Sbjct: 502 ELKPGDYVVHINHGIGVYKGIKQIDVSGHKRDYL-DIVYDKGDKLYVPVEQLDLIQKYIG 560
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK+ + Q+ AK+ ++V+ +
Sbjct: 561 SE------------GKSPKVTKLGGAEWQKAKAKVRKSINDIAEDLVKLYATRSTIKGHK 608
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+S+ ++ + E + + ++ I+ ++ S
Sbjct: 609 FSKDTQWQR---QFEDEFPFEETPDQLTSLEEIKKDMESDK 646
>gi|188589474|ref|YP_001919598.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
Alaska E43]
gi|188499755|gb|ACD52891.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
Alaska E43]
Length = 1167
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 16/161 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK+ +V+G K ++ L VPV + I
Sbjct: 502 ELKPGDYVVHVNHGIGVYKGIKQIDVSGHKRDYL-DIVYDKGDKLYVPVEQLDLIQKYIG 560
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK+ + Q+ AK+ ++V+ +
Sbjct: 561 SE------------GKSPKVTKLGGAEWQKAKAKVRKSINDIAEDLVKLYATRSTIKGHK 608
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+S+ ++ + E + + ++ I+ ++ S
Sbjct: 609 FSKDTQWQR---QFEDEFPFEETPDQLTSLEEIKKDMESDK 646
>gi|167816296|ref|ZP_02447976.1| transcription-repair coupling factor [Burkholderia pseudomallei 91]
Length = 1175
Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 494 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 552
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 553 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 596
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 597 AAREGHAFGLDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 642
>gi|297582393|ref|YP_003698173.1| transcription-repair coupling factor [Bacillus selenitireducens
MLS10]
gi|297140850|gb|ADH97607.1| transcription-repair coupling factor [Bacillus selenitireducens
MLS10]
Length = 1186
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 60/179 (33%), Gaps = 22/179 (12%)
Query: 2 TFQQKRDAMR------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++++ + +TG+ +V+ HG+G I+ +V + ++ I++ +
Sbjct: 482 PKRRQKLSNAERIKNYSELKTGDWVVHINHGIGKYLGIETLQVGDVHKDYLHISYAGND- 540
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + + +E K ++ ++ K+ S
Sbjct: 541 KLYVPVDQIDQVQKYVANE------------DKDPKLYSLGGSEWKKVKKKVQSSVQDIA 588
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++S L + + +AI I+ ++
Sbjct: 589 DDLIKLYAERQETKGFAFSPDGL---EQREFESTFPYQETDDQLQAIEEIKKDMEQDRP 644
>gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus
hydrogenoformans Z-2901]
Length = 1160
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 16/160 (10%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F G+++V+P HG+G IK EV G ++ VI + + L VP + ++
Sbjct: 497 FSPGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVI-AYQGEDRLYVPPEQVGNLQKYVGV 555
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
G+ + Q ++ + ++ + ++P ++
Sbjct: 556 ------------DGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLELYAKRMAKPGFAF 603
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
S +++ + + +AI ++ ++
Sbjct: 604 SPDTVWQ---KEFEERFPYEETPDQLKAIEEVKRDMEKPK 640
>gi|314929229|gb|EFS93060.1| transcription-repair coupling factor [Propionibacterium acnes
HL044PA1]
Length = 1194
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
++G+ +V+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 506 NQIQPLELKSGDFVVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 556
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 557 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 616
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 617 ATKGHAFGPDTAWQR---ELEDAFAYVETPDQLTTIADVKRDMEQVVP 661
>gi|313835372|gb|EFS73086.1| transcription-repair coupling factor [Propionibacterium acnes
HL037PA2]
gi|314972378|gb|EFT16475.1| transcription-repair coupling factor [Propionibacterium acnes
HL037PA3]
gi|328908370|gb|EGG28129.1| transcription-repair coupling factor [Propionibacterium sp. P08]
Length = 1194
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
++G+ +V+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 506 NQIQPLELKSGDFVVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 556
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 557 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 616
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 617 ATKGHAFGPDTAWQR---ELEDAFAYVETPDQLTTIADVKRDMEQVVP 661
>gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
flavithermus WK1]
gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
flavithermus WK1]
Length = 1189
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ I + L VPV + +
Sbjct: 517 TDLKVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHI-QYQGNDTLYVPVDQMDLVQKYV 575
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + ++ K+ S ++++ ++
Sbjct: 576 GSE------------GKEPKIYKLGGTEWKKVKKKVESSVQDIAEDLMKLYAEREASKGY 623
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I I+ ++ S+
Sbjct: 624 AFSPDNEMQR---EFEAAFPYQETEDQLRSIREIKRDMESERP 663
>gi|53723684|ref|YP_103135.1| transcription-repair coupling factor [Burkholderia mallei ATCC
23344]
gi|121600246|ref|YP_993304.1| transcription-repair coupling factor [Burkholderia mallei SAVP1]
gi|52427107|gb|AAU47700.1| transcription-repair coupling factor [Burkholderia mallei ATCC
23344]
gi|121229056|gb|ABM51574.1| transcription-repair coupling factor [Burkholderia mallei SAVP1]
Length = 1157
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 476 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 535 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 578
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 579 AAREGHAFGLDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 624
>gi|228476811|ref|ZP_04061459.1| transcription-repair coupling factor [Streptococcus salivarius
SK126]
gi|228251548|gb|EEK10685.1| transcription-repair coupling factor [Streptococcus salivarius
SK126]
Length = 1168
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ +D + +PV + +
Sbjct: 489 ELEKGDYVVHQTHGIGQFKGIETIEIKGVHRDYL-TIQYQDSATISLPVEQIESLSKYVS 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ ++++ +
Sbjct: 548 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFA 595
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A + + +I I+ ++ S
Sbjct: 596 FSPD---DDNQKDFEDDFAYAETEDQLRSIKEIKADMESDKP 634
>gi|71902673|ref|YP_279476.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS6180]
gi|71801768|gb|AAX71121.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS6180]
Length = 1167
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|84503554|ref|ZP_01001605.1| transcription-repair coupling factor [Oceanicola batsensis
HTCC2597]
gi|84388044|gb|EAQ01092.1| transcription-repair coupling factor [Oceanicola batsensis
HTCC2597]
Length = 1152
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R Q G+ +V+ HG+G ++ AG E V+ + ++ L
Sbjct: 465 ARKKRRAENFLTEAQSLSPGDLVVHVDHGIGRYLGMEVITAAGAAHECLVLEYA-EEARL 523
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q A++
Sbjct: 524 YLPVENIELLSKY-----GHEEGLLDRLGGGA----------WQAKKARLKERIREMADR 568
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + E A + + + AI + ++ S
Sbjct: 569 LIRIAAERALRRAPIL---EPPEGAWDAFQARFPYQETDDQLAAIEDVMTDMLSGHP 622
>gi|319891456|ref|YP_004148331.1| Transcription-repair coupling factor [Staphylococcus
pseudintermedius HKU10-03]
gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus
pseudintermedius HKU10-03]
gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus
pseudintermedius ED99]
Length = 1170
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 18/169 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HGVG ++ V + ++ I + L VPV +
Sbjct: 491 KIKSYQELNVGDYVVHVHHGVGRYLGVETLAVGDVHRDYIKI-QYQGTDQLFVPVDQMEQ 549
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE + L + G K + ++ ++ +L
Sbjct: 550 VQKYVGSEDKSPK--LYKLGGSE--------------WKKTKAKVQRSVEDIADELIALY 593
Query: 127 SQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E+S + ++A + + + ++I I+ ++ S+
Sbjct: 594 KEREQSVGYQFGPDTAEQYAFEMDFPYDLTDDQAKSIIEIKNDMESQRP 642
>gi|319949680|ref|ZP_08023714.1| transcription-repair coupling factor [Dietzia cinnamea P4]
gi|319436671|gb|EFV91757.1| transcription-repair coupling factor [Dietzia cinnamea P4]
Length = 1222
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 8/172 (4%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+++ + G+ +V+ HG+G E+ E++V G + ++ + ++ G
Sbjct: 508 SKRRNQVDPLALKAGDLVVHDQHGIGRFVEMVERQVRGGD-----GSSRREYLVIEYAPG 562
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
K G R + + + V G+A M Q K E+V+
Sbjct: 563 KRGAAGDRLYVPMESLGQLSRYVGGEAPTLSKMGGADWQNTKRKARKAVREIATELVQLY 622
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S P +++ ++ + ++ + AI ++ ++ +
Sbjct: 623 AKRQSAPGRAFGPDTPWQREME---DAFPFTETVDQLSAIEEVKADMEKSAP 671
>gi|283458570|ref|YP_003363203.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
gi|283134618|dbj|BAI65383.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
Length = 1330
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 60/173 (34%), Gaps = 4/173 (2%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T +++ G+++V+ HG+G E+ + VAG V K+ + ++
Sbjct: 626 TRRRRNAVDPLALNPGDYVVHERHGIGRFVEMTSRPVAGASPVNGVQPM-KEYLVIEYAP 684
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K R + ++ V G+ M + ++ A++V+
Sbjct: 685 AKRGGAPDRLFVPSDQLDLISNYVGGENPSLSKMGGSDWAKTKSRARKAVKEIAADLVKL 744
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ ++ + + + AI+ ++ ++ +
Sbjct: 745 YSARQASRGHAFAADTPWQR---ELEESFPYNETPDQLTAIHEVKEDMEKEIP 794
>gi|291535009|emb|CBL08121.1| Transcriptional regulators, similar to M. xanthus CarD [Roseburia
intestinalis M50/1]
Length = 165
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 7/165 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
F GE++V A GV I +I +++G E ++V+A DK + I MR
Sbjct: 1 MFEIGEYVVCGAKGVCQIRDITHIDMSGADKEKLYYVLAPVGDKNGTIYVPTDSEKIIMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
+ ER + + + +R + Y + + D A +V+ L++ +
Sbjct: 61 RTISKEEAERLIDELPQIELLWVPDDKQREETYKEALRTCDYHAWVSIVKTLYQRKKERL 120
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ + + + ++A N + E++ + + + I LS
Sbjct: 121 AQGKKATAVDERYMKAAENGLYGELSLTLGVPREKMEDYIRERLS 165
>gi|254293942|ref|YP_003059965.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
gi|254042473|gb|ACT59268.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
Length = 1152
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/178 (12%), Positives = 50/178 (28%), Gaps = 22/178 (12%)
Query: 2 TFQQKRDA-----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++KR G+ IV+ HGVG ++ +V + + +
Sbjct: 466 PRKRKRKTASYIAEAAALSPGDMIVHIDHGVGRYEGLQTVDVGSAPHDCLELVYAGGD-K 524
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
+ +PV I ++ W R AK +
Sbjct: 525 ILLPVENIELISRYGADSGE---------GSMDKLGGAGWQSR----KAKAKKNIMEMAG 571
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++R + + + ++ + + + AI +L+S
Sbjct: 572 DLIRIAAEREMRKAEKTADADGL---FDEFCARFPYEETDDQLNAIEDCLSDLASGKP 626
>gi|326559271|gb|EGE09699.1| transcription-repair coupling factor [Moraxella catarrhalis
103P14B1]
gi|326560196|gb|EGE10584.1| transcription-repair coupling factor [Moraxella catarrhalis 7169]
gi|326564935|gb|EGE15137.1| transcription-repair coupling factor [Moraxella catarrhalis
46P47B1]
gi|326573327|gb|EGE23295.1| transcription-repair coupling factor [Moraxella catarrhalis
101P30B1]
gi|326576857|gb|EGE26763.1| transcription-repair coupling factor [Moraxella catarrhalis O35E]
Length = 1184
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ ++ Q F G +V+ HG+G + +V + EF + +
Sbjct: 493 TRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYAD- 551
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VP+ IG S+ V K+ GK K L
Sbjct: 552 DASIYVPITNLALIGRYSGSDLQTV-SLSKIGSGK---------------WEKAKLKALE 595
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + S + A +I + EAI+ + ++
Sbjct: 596 QIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQN 655
Query: 173 SS 174
Sbjct: 656 KP 657
>gi|28894918|ref|NP_801268.1| transcription-repair coupling factor [Streptococcus pyogenes SSI-1]
gi|28810163|dbj|BAC63101.1| putative transcription-repair coupling factor [Streptococcus
pyogenes SSI-1]
Length = 1167
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQISSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|187932793|ref|YP_001884406.1| transcription-repair coupling factor [Clostridium botulinum B str.
Eklund 17B]
gi|187720946|gb|ACD22167.1| transcription-repair coupling factor [Clostridium botulinum B str.
Eklund 17B]
Length = 1167
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 16/161 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G IK+ +V+G K ++ L VPV + I
Sbjct: 502 ELKPGDYVVHVNHGIGVYKGIKQIDVSGHKRDYL-DIVYDKGDKLYVPVEQLDLIQKYIG 560
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK+ + Q+ AK+ ++V+ +
Sbjct: 561 SE------------GKSPKVTKLGGAEWQKAKAKVRKSINDIAEDLVKLYATRSTIKGHK 608
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+S+ ++ + E + + ++ I+ ++ S
Sbjct: 609 FSKDTQWQR---QFEDEFPFEETPDQLTSLEEIKKDMESDK 646
>gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583]
gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583]
gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis
TX0309B]
gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis
TX0309A]
Length = 1189
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|15674256|ref|NP_268429.1| putative transcription-repair coupling factor [Streptococcus
pyogenes M1 GAS]
gi|71909820|ref|YP_281370.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS5005]
gi|13621331|gb|AAK33151.1| putative transcription-repair coupling factor [Streptococcus
pyogenes M1 GAS]
gi|71852602|gb|AAZ50625.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS5005]
Length = 1167
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQISSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris
StLB046]
Length = 1170
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 59/174 (33%), Gaps = 17/174 (9%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
MT ++ ++G+++V+ HG+G I+ V G ++ + ++ L VP
Sbjct: 485 MTNAER-IKSYTEIKSGDYVVHVHHGIGKYIGIETLVVNGTHQDYLHV-RYREDDKLYVP 542
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V + I S K + ++ K+++ ++++
Sbjct: 543 VDQIELIQRYVPSG------------EKEPKLHKLGGTEWKKTHKKVSNAVQDIADDLIK 590
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ ++S + + I ++ ++ +
Sbjct: 591 LYAKREAEKGYAFSPD---SDEQRGFEAAFPYEETEDQLRTIAEVKKDMERERP 641
>gi|56808860|ref|ZP_00366571.1| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Streptococcus pyogenes M49 591]
Length = 1167
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
Length = 1189
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11]
gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11]
Length = 1179
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|78224730|ref|YP_386477.1| transcription-repair coupling factor [Geobacter metallireducens
GS-15]
gi|78195985|gb|ABB33752.1| transcription-repair coupling factor [Geobacter metallireducens
GS-15]
Length = 1158
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 4 QQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K+ + G+++V+ HG+G ++ ++G +F ++ + L +PV
Sbjct: 486 RKKQIMTSLAELKPGDYMVHLDHGIGIYRGLQHISLSGCAGDFILLEYAGGD-KLYLPVD 544
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + A +E + + G + K A+ E+ +L
Sbjct: 545 RLNLVQRY--VGAEGLEPRVDKLGGTS--------------WEKAKGKARAAVQEMAGEL 588
Query: 123 HRTDSQPEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + A + + AI + +++S
Sbjct: 589 LQIYAARQLHEGHAFSPPDDLYREFEASFAYEETSDQMSAIMDVIGDMTSAKP 641
>gi|260463949|ref|ZP_05812145.1| transcription-repair coupling factor [Mesorhizobium opportunistum
WSM2075]
gi|259030324|gb|EEW31604.1| transcription-repair coupling factor [Mesorhizobium opportunistum
WSM2075]
Length = 1165
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 21/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KR + G+ +V+ HG+G ++ E G + I + L
Sbjct: 480 SKRKKRASDFIAEASALSAGDIVVHADHGIGRFIGLRTIEAVGAPHDCLEIHYAG-DDRL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + E L + G A Q AK+ L +
Sbjct: 539 FLPVENIELLSRY---GSDTAEATLDKLGGGA----------WQSRKAKLKKRLLDMAGQ 585
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + + + AI+ + +L +
Sbjct: 586 LIRIAAERQMRAAPALVPAEGL---YDEFSARFPYEETDDQQTAIDSVRDDLGAGKP 639
>gi|94987637|ref|YP_595738.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS9429]
gi|94991503|ref|YP_599602.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS2096]
gi|94541145|gb|ABF31194.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS9429]
gi|94545011|gb|ABF35058.1| Transcription-repair coupling factor [Streptococcus pyogenes
MGAS2096]
Length = 1167
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|92113691|ref|YP_573619.1| transcription-repair coupling factor [Chromohalobacter salexigens
DSM 3043]
gi|91796781|gb|ABE58920.1| transcription-repair coupling factor [Chromohalobacter salexigens
DSM 3043]
Length = 1150
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G +V+ +HGVG ++ E G EF + + L VPV I
Sbjct: 477 ELRPGAPVVHQSHGVGRYQGLETLEAGGQAAEFLALEYAG-GAKLYVPVDSLHLISRYAG 535
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + S + K AE++ R +++ +
Sbjct: 536 ATDELAP------------LHKLGSETWDKAKRKAAEKIRDTAAELLDTYARREAREGFA 583
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + R + + AI + ++++
Sbjct: 584 CA---PPDEDYARFAASFPFEETPDQHAAIEAVIGDMTAARP 622
>gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
100599]
gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
100599]
Length = 1182
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G I+ +E+ G+ ++ I + L VP+ + +
Sbjct: 501 ELKPGDFVVHVNHGIGKYLGIETKEILGIHKDYLHIQYAAGDS-LFVPIDQIDHVQKY-- 557
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + + + G + K+ S ++++ +S +
Sbjct: 558 VASEEAQPKIYSLGGSE----------WKRVKNKVQSSVKDIAEDLIKLYAARESAVGHT 607
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + AI+ ++ ++ K
Sbjct: 608 FSPDT---TEQREFEAMFPYQETQDQLRAISEVKADMERKRP 646
>gi|167629346|ref|YP_001679845.1| transcription-repair coupling factor [Heliobacterium modesticaldum
Ice1]
gi|167592086|gb|ABZ83834.1| transcription-repair coupling factor [Heliobacterium modesticaldum
Ice1]
Length = 1247
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 58/158 (36%), Gaps = 16/158 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+++V+ HG+G +++ EV G+ ++ VI + + L VP + I +E
Sbjct: 515 GDYVVHVNHGIGRYMGVEKLEVGGVHKDYLVIRYAGED-RLYVPTDQVHLIQKYVGAE-- 571
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
G A + + K+ ++++ +S+P +YS
Sbjct: 572 ----------GVAPKLYRLGGNEWHKVKQKVKDSVRELAGDLLKLYAARESKPGYAYSAD 621
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + +I ++ ++ +
Sbjct: 622 TPWQ---KEFEEAFPYEETPDQARSIAEVKTDMEKAKA 656
>gi|46202166|ref|ZP_00053648.2| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Magnetospirillum magnetotacticum MS-1]
Length = 1131
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 24/179 (13%)
Query: 2 TFQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++K+ A G+ +V+ HG+G + EV+G + +
Sbjct: 446 PARKKKKGAQFIAEASALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLRV-IYDGGDK 504
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VPV + R SE V ++ T W R + + I
Sbjct: 505 LFVPVENID-VLTRFGSEQAGV--------SLDKLGGTAWQARKAKLKKR--------IR 547
Query: 117 EVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ L +Q + E + E + + + AI +L+S
Sbjct: 548 DIADQLIGIAAQRKMRQGEALVPAEGLYDEFCARFPFAETEDQLRAIEDSIADLASGKP 606
>gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039]
gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039]
Length = 1173
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 497 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SEA KA + + K++S ++++ +S+ +
Sbjct: 556 SEA------------KAPRINKLGGSEWAKTKRKVSSKIEDIADDLIKLYAARESEKGYA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 604 FGPDDAYQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 642
>gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium
1,141,733]
gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium
1,141,733]
Length = 1173
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 497 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SEA KA + + K++S ++++ +S+ +
Sbjct: 556 SEA------------KAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 604 FGPDDAYQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 642
>gi|238758409|ref|ZP_04619586.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236]
gi|238703313|gb|EEP95853.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236]
Length = 1148
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLETGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G +WSR Q+ K+
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADE--NAPLHRLGG------DVWSRARQKAAEKVR--- 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ + + + + + +AIN + ++
Sbjct: 563 -DVAAELLDIYAQRAAKAGFKFKHDR---EQYQLFCQSFPFETTPDQEQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|254475764|ref|ZP_05089150.1| transcription-repair coupling factor [Ruegeria sp. R11]
gi|214030007|gb|EEB70842.1| transcription-repair coupling factor [Ruegeria sp. R11]
Length = 1153
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + ++ L
Sbjct: 459 PKKRRKAENFLTETQSLSPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYA-EQAKL 517
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+
Sbjct: 518 YLPVENIELLSKY-----GHDEGLLDRLGGGA----------WQAKKAKLKERIREMADR 562
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI + +L+S
Sbjct: 563 LIRVAAERALRKAPMM---DPPPHAWEEFSARFPYQETDDQLRAIGEVMADLNSGMP 616
>gi|307718846|ref|YP_003874378.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6192]
gi|306532571|gb|ADN02105.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6192]
Length = 1127
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 56/163 (34%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G IK +V + ++ + + ++ + VP+ + +
Sbjct: 463 ELSPGDYVVHVHHGIGRFLGIKRMKVGENERDYLHLEYAGEE-YVFVPIEQVNLVQRYIG 521
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S ++ + W +R + ++ ++ + L S+ + +
Sbjct: 522 SSDAA--------PRLDKLGSSSWQKRKERVKK--------SVEDLAKRLLAIYSRRKLA 565
Query: 133 YSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + I ++ ++ S
Sbjct: 566 HGFAFPPDTEWQMEFEARFPFEETEDQLRCIEEVKRDMESPRP 608
>gi|326571030|gb|EGE21054.1| transcription-repair coupling factor [Moraxella catarrhalis BC7]
Length = 1184
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ ++ Q F G +V+ HG+G + +V + EF + +
Sbjct: 493 TRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYAD- 551
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VP+ IG S+ V K+ GK K L
Sbjct: 552 DASIYVPITNLALIGRYSGSDLQTV-SLSKIGSGK---------------WEKAKLKALE 595
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + S + A +I + EAI+ + ++
Sbjct: 596 QIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQN 655
Query: 173 SS 174
Sbjct: 656 KP 657
>gi|326570293|gb|EGE20338.1| transcription-repair coupling factor [Moraxella catarrhalis BC8]
Length = 1184
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ ++ Q F G +V+ HG+G + +V + EF + +
Sbjct: 493 TRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYAD- 551
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VP+ IG S+ V K+ GK K L
Sbjct: 552 DASIYVPITNLALIGRYSGSDLQTV-SLSKIGSGK---------------WEKAKLKALE 595
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + S + A +I + EAI+ + ++
Sbjct: 596 QIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQN 655
Query: 173 SS 174
Sbjct: 656 KP 657
>gi|326567865|gb|EGE17966.1| transcription-repair coupling factor [Moraxella catarrhalis
12P80B1]
Length = 1184
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ ++ Q F G +V+ HG+G + +V + EF + +
Sbjct: 493 TRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYAD- 551
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VP+ IG S+ V K+ GK K L
Sbjct: 552 DASIYVPITNLALIGRYSGSDLQTV-SLSKIGSGK---------------WEKAKLKALE 595
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + S + A +I + EAI+ + ++
Sbjct: 596 QIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQN 655
Query: 173 SS 174
Sbjct: 656 KP 657
>gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312]
Length = 1189
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137]
Length = 1189
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980]
gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980]
Length = 1173
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 497 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SEA KA + + K++S ++++ +S+ +
Sbjct: 556 SEA------------KAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 604 FGPDDAYQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 642
>gi|326575775|gb|EGE25698.1| transcription-repair coupling factor [Moraxella catarrhalis CO72]
Length = 1184
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ ++ Q F G +V+ HG+G + +V + EF + +
Sbjct: 493 TRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYAD- 551
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VP+ IG S+ V K+ GK K L
Sbjct: 552 DASIYVPITNLALIGRYSGSDLQTV-SLSKIGSGK---------------WEKAKLKALE 595
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + S + A +I + EAI+ + ++
Sbjct: 596 QIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQN 655
Query: 173 SS 174
Sbjct: 656 KP 657
>gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302]
Length = 1189
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|302343056|ref|YP_003807585.1| transcription-repair coupling factor [Desulfarculus baarsii DSM
2075]
gi|301639669|gb|ADK84991.1| transcription-repair coupling factor [Desulfarculus baarsii DSM
2075]
Length = 1147
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ HGVG +K V + +F KD L +P + I
Sbjct: 481 AALDDLAPGDLVVHIDHGVGRYQGLKTMAVGAAESDFL-EISYKDGDRLYLPADRMALIS 539
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ AL + GKA + ++ ++V +
Sbjct: 540 KYRG--PDGAAPALDRLGGKA----------WAKAKGRVKKAVETIAHDLVELYAARQAS 587
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + A + + +AI + ++ +
Sbjct: 588 KGFAFT---PPDGAYREFEAGFPYEETPDQAQAIEDVIADMITDKP 630
>gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6]
gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6]
Length = 1179
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|227552670|ref|ZP_03982719.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
gi|257897406|ref|ZP_05677059.1| transcription-repair coupling factor [Enterococcus faecium Com12]
gi|293378835|ref|ZP_06624990.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
gi|227178199|gb|EEI59171.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
gi|257833971|gb|EEV60392.1| transcription-repair coupling factor [Enterococcus faecium Com12]
gi|292642376|gb|EFF60531.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
Length = 1173
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 497 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SEA KA + + K++S ++++ +S+ +
Sbjct: 556 SEA------------KAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAVRESEKGYA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 604 FGPDDAYQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 642
>gi|84687524|ref|ZP_01015400.1| transcription-repair coupling factor [Maritimibacter alkaliphilus
HTCC2654]
gi|84664433|gb|EAQ10921.1| transcription-repair coupling factor [Rhodobacterales bacterium
HTCC2654]
Length = 1153
Score = 97.9 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R Q GE IV+ HGVG ++ G + ++ + L
Sbjct: 462 PKRKRRAENFLTEHQSLSPGELIVHVDHGVGIYRGLETITALGAPHDCVLLEYAGGD-RL 520
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + L + G A Q A++ +
Sbjct: 521 YLPVENIELLSKY-----GHEQGLLDKLGGGA----------WQAKKARLKERIREVADK 565
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + A + + AI + ++S+ S
Sbjct: 566 LIRLAAERSLRKAPVM---EAPHHAWEEFAARFPYTETDDQLSAIADVIEDMSAGSP 619
>gi|325523528|gb|EGD01838.1| transcription-repair coupling factor [Burkholderia sp. TJI49]
Length = 827
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 19/181 (10%), Positives = 51/181 (28%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+++++ + G+ +V+ HG+G + ++ + EF + +
Sbjct: 132 RRRQEQASNVDAMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAG-D 190
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + +
Sbjct: 191 SKLYVPVAQLHVISRYSGADPDSAP--LHALGSGQ--------------WERAKRKAAQQ 234
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ E + + + AI + +++S
Sbjct: 235 IRDTAAELLNLYARRAAREGHAFALEPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK 294
Query: 174 S 174
Sbjct: 295 P 295
>gi|315187200|gb|EFU20957.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6578]
Length = 1127
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 56/163 (34%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G IK +V + ++ + + ++ + VP+ + +
Sbjct: 463 ELSPGDYVVHVHHGIGRFLGIKRMKVGENERDYLHLEYAGEE-YVFVPIEQVNLVQRYIG 521
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S ++ + W +R + ++ ++ + L S+ + +
Sbjct: 522 SSDAA--------PRLDKLGSSSWQKRKERVKK--------SVEDLAKRLLAIYSRRKLA 565
Query: 133 YSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + I ++ ++ S
Sbjct: 566 HGFAFPPDTEWQMEFEARFPFEETEDQLRCIEEVKRDMESPRP 608
>gi|323706238|ref|ZP_08117805.1| transcription-repair coupling factor [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323534402|gb|EGB24186.1| transcription-repair coupling factor [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 1166
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 53/168 (31%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G ++V+ +G+G I++ V G+ ++ I + L VPV +
Sbjct: 493 RIKNFTELTVGSYVVHVNYGIGKYEGIEKITVDGVTKDYLKIKYAG-DDKLFVPVEQLDL 551
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ E K + S + + ++++ +
Sbjct: 552 VQKYIGPE------------DKPPKLNKLGSSDWSKLKKRAKKAVEDIAKDLIKLYAKRQ 599
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S+ ++ + + + I I+ ++ S
Sbjct: 600 TMKGYAFSKDTPWQ---KDFEEKFPYEETEDQLRCIEEIKKDMESDKP 644
>gi|315222838|ref|ZP_07864723.1| transcription-repair coupling factor [Streptococcus anginosus
F0211]
gi|315188074|gb|EFU21804.1| transcription-repair coupling factor [Streptococcus anginosus
F0211]
Length = 1168
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNVHGIGRYLGIETIEISGIHRDYL-TIQYQNADRISIPVDQIHLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + R Q+ ++ ++++ +
Sbjct: 550 S------------DGKAPKINKLNDGRFQKTKQRVQHQVEDIAEDLIKLYSERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S Y+ + V + + +I ++ ++ S
Sbjct: 598 FSSDDSYQ---QEFDNDFPYVETEDQLRSIKEVKKDMESDHP 636
>gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis
AR01/DG]
gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis
ARO1/DG]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2]
gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031]
gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|169628250|ref|YP_001701899.1| transcription-repair coupling factor [Mycobacterium abscessus ATCC
19977]
gi|169240217|emb|CAM61245.1| Probable transcription-repair coupling factor (TrcF) [Mycobacterium
abscessus]
Length = 1216
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 59/174 (33%), Gaps = 8/174 (4%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 504 LPAKRRNQVDPLALSAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASGKRG---- 559
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
A R +++ + V G++ + K E+V
Sbjct: 560 -AAAGGQSDRLYVPMDSLDQLSRYVGGESPGLSRLGGSDWTNTKTKARKAVREIAGELVA 618
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + V ++ + AI ++ ++
Sbjct: 619 LYAARQAAPGHAFAPDTPWQREME---DAFGFVETVDQLTAITEVKSDMEKPVP 669
>gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
4200]
gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
4200]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
29200]
gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
29200]
gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000]
gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341]
gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|327481347|gb|AEA84657.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri DSM
4166]
Length = 1145
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G EF ++ + + L VPV I
Sbjct: 471 TELREGAPVVHIDHGVGRYQGLVTLEIEGQAQEFLLLQYAD-EAKLYVPVASLHLIARYT 529
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 530 GSDDALAP------------LHKLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARQGY 577
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Q+ + + AI+ + +L S
Sbjct: 578 AFKDPQV---DYETFAAGFPFEETPDQQAAIDAVREDLLSAKP 617
>gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712]
gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613]
gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
512]
gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
516]
gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712]
gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613]
gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
512]
gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
516]
gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017]
gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027]
gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1]
gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98]
gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1]
gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98]
gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|94989515|ref|YP_597615.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS10270]
gi|94543023|gb|ABF33071.1| Transcription-repair coupling factor [Streptococcus pyogenes
MGAS10270]
Length = 1167
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKVNKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|50913352|ref|YP_059324.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS10394]
gi|50902426|gb|AAT86141.1| Transcription-repair coupling factor [Streptococcus pyogenes
MGAS10394]
Length = 1167
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|148543499|ref|YP_001270869.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
20016]
gi|227363648|ref|ZP_03847762.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
gi|325681843|ref|ZP_08161362.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
gi|148530533|gb|ABQ82532.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
20016]
gi|227071317|gb|EEI09626.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
gi|324978934|gb|EGC15882.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 59/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G + IK EV + ++ +I +D + VPV + +
Sbjct: 498 TDLKPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIIN-YRDNAQIYVPVTQLNLVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + +++S E+V + +++
Sbjct: 557 SSE------------SKTPHINKLGGNEWAKTKRRVSSKIEDIADELVDLYAKREAEKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + +I+ I+ ++
Sbjct: 605 AFPKDDYLQ---KQFDANFPYNETRDQLRSIDEIKEDMEKPKP 644
>gi|238791842|ref|ZP_04635479.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC
29909]
gi|238728946|gb|EEQ20463.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC
29909]
Length = 1148
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G+A K
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADE--NAPLHKLGGEA----------WGRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ + + + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAAKSGFKFKHDR---EQYQLFCQSFPFETTPDQEQAINAVLSDMCR 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|303257068|ref|ZP_07343082.1| transcription-repair coupling factor [Burkholderiales bacterium
1_1_47]
gi|302860559|gb|EFL83636.1| transcription-repair coupling factor [Burkholderiales bacterium
1_1_47]
Length = 1157
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HGVG + + EF I + K + L VPV + I
Sbjct: 488 DLSELKVGDPVVHLDHGVGRYRGLTSMSTPDGEAEFLQIDYAK-EAKLYVPVAQLHLISR 546
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + K + + + +L +
Sbjct: 547 YSGADPETAP--LHSLGKGD--------------WEKARKKAALQVRDTAAELLNIYALR 590
Query: 130 EKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A A + + AIN + ++ S
Sbjct: 591 QSRKGYAFKFSLADYEAFSEAFAFEETEDQLAAINAVYRDMISDKP 636
>gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8]
gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|269837730|ref|YP_003319958.1| transcription-repair coupling factor [Sphaerobacter thermophilus
DSM 20745]
gi|269786993|gb|ACZ39136.1| transcription-repair coupling factor [Sphaerobacter thermophilus
DSM 20745]
Length = 1173
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 55/162 (33%), Gaps = 17/162 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+ + EV+G++ E+ ++ + L +PV + I +
Sbjct: 505 SLTPGQYVVHVEHGIARYGGLVTLEVSGVEREYLLLEYA-ANDRLYLPVDQIDRITPYEG 563
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ G + S ++ E+++ ++ +
Sbjct: 564 A-------------GIEPKLTRLGSPEWARVKQRVRRAVREMAFELLQLYAAREATEGVA 610
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + V + + +AI ++ ++
Sbjct: 611 FGPDTDWDR---ELEESFPYVETPGQLQAIREVKADMEKPRP 649
>gi|184152907|ref|YP_001841248.1| transcription-repair coupling factor [Lactobacillus reuteri JCM
1112]
gi|183224251|dbj|BAG24768.1| transcription-repair coupling factor [Lactobacillus reuteri JCM
1112]
Length = 1178
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 59/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G + IK EV + ++ +I +D + VPV + +
Sbjct: 497 TDLKPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIIN-YRDNAQIYVPVTQLNLVQKYV 555
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + +++S E+V + +++
Sbjct: 556 SSE------------SKTPHINKLGGNEWAKTKRRVSSKIEDIADELVDLYAKREAEKGY 603
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + +I+ I+ ++
Sbjct: 604 AFPKDDYLQ---KQFDANFPYNETRDQLRSIDEIKEDMEKPKP 643
>gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC20]
gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC20]
Length = 1172
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ +++ L +PV + I
Sbjct: 495 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNEDKLFIPVTQLNLIQKYVA 553
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE+ + + + G AK I ++ DL ++ E
Sbjct: 554 SESKTPK--INKLGGSE--------------WAKTKRKVTAKIEDIADDLILLYAKRESE 597
Query: 133 YSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++ +
Sbjct: 598 KGYAFQPDDAYQKEFEDAFPYSETDDQLRSTAEIKRDMEKEKP 640
>gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
Ef11]
gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
Ef11]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|94993402|ref|YP_601500.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS10750]
gi|94546910|gb|ABF36956.1| Transcription-repair coupling factor [Streptococcus pyogenes
MGAS10750]
Length = 1167
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC30]
gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC10]
gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC30]
gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC10]
Length = 1172
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ +++ L +PV + I
Sbjct: 495 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNEDKLFIPVTQLNLIQKYVA 553
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE+ + + + G AK I ++ DL ++ E
Sbjct: 554 SESKTPK--INKLGGSE--------------WAKTKRKVTAKIEDIADDLILLYAKRESE 597
Query: 133 YSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++ +
Sbjct: 598 KGYAFQPDDAYQKEFEDAFPYSETDDQLRSTAEIKRDMEKEKP 640
>gi|154496044|ref|ZP_02034740.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC
29799]
gi|150274599|gb|EDN01663.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC
29799]
Length = 1169
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 15/173 (8%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+++ G+ +V+ HG+G + + V G++ ++ IA+ + L VP
Sbjct: 480 TNRQKLGSYADLSVGDLVVHEHHGIGRYQGMVKMPVDGIQKDYVKIAYAGADV-LYVPAT 538
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + + E G A K + A+ ++ + L
Sbjct: 539 QLDLVSKYIGAGEDAQETKKLSKLGGAD-------------WEKAKTRAKKAVKDLAKGL 585
Query: 123 HRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Q ++ +S + + + + I I+ ++ +
Sbjct: 586 IQLYAQRQRQPGFAFSPDSEWMREFEEQFEYTETDDQLRCIAEIKGDMEAPRP 638
>gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645]
gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630]
Length = 1189
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 562
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 563 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 608
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 609 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 652
>gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis
HIP11704]
gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis
HIP11704]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|332524809|ref|ZP_08401002.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus
JA2]
gi|332108111|gb|EGJ09335.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus
JA2]
Length = 1145
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 27/182 (14%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
++K++ + G+ +V+ HG+G + + EF + +
Sbjct: 455 RRRKQEQTSNVDALIKDLSELKLGDPVVHMNHGIGRYRGLVNIDTGEGPSEFLHLEYAD- 513
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
K L VPV + I A E L + K
Sbjct: 514 KATLYVPVAQLHLISRYTGVSAD--EAPLHKLGSGQ--------------WDKARRKAAE 557
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + +L ++ Y A + + AI+ + +L S
Sbjct: 558 QVRDTAAELLNLYARRAAREGYAHRYSPADYEAFAASFGFEETPDQRAAIHAVIQDLVSP 617
Query: 173 SS 174
Sbjct: 618 RP 619
>gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
Length = 1173
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 497 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SEA KA + + K++S ++++ +S+ +
Sbjct: 556 SEA------------KAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 604 FGPDDAYQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 642
>gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3]
gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G ++ EV G+ ++ ++ L +PV + I +K
Sbjct: 496 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLI--QK 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G K I ++ DL + E
Sbjct: 553 FVASESKTPKINKLGGSE--------------WTKTKRKVASKIEDIADDLILLYATRES 598
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + + I+ ++
Sbjct: 599 EKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRP 642
>gi|323136889|ref|ZP_08071969.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242]
gi|322397650|gb|EFY00172.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242]
Length = 1181
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 19/166 (11%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G ++ AG + + + L +PV +
Sbjct: 505 EVAALTAGDLVVHVDHGIGRFIGLETITAAGAPHDCLELHYAGGD-KLYLPVENIELLTR 563
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+A R+ W R + I E+ + L +Q
Sbjct: 564 YGGEDAEAQL---------DRLGGVGWQTRKARMKNR--------IREMAKGLIAIAAQR 606
Query: 130 EKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + E + + + AI + +L+S
Sbjct: 607 QLRQAPKLAPPEGLYDEFCARFPYDETEDQLAAIEAVLDDLASGRP 652
>gi|194467674|ref|ZP_03073661.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
gi|194454710|gb|EDX43607.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
Length = 1179
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 59/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G + IK EV + ++ +I +D + VPV + +
Sbjct: 498 TDLKPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIIN-YRDNAQIYVPVTQLNLVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + +++S E+V + +++
Sbjct: 557 SSE------------SKTPHINKLGGNEWAKTKRRVSSKIEDIADELVDLYAKREAEKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + +I+ I+ ++
Sbjct: 605 AFPKDDYLQ---KQFDANFPYNETRDQLRSIDEIKEDMEKPKP 644
>gi|90416638|ref|ZP_01224568.1| transcription-repair coupling protein Mfd [marine gamma
proteobacterium HTCC2207]
gi|90331391|gb|EAS46627.1| transcription-repair coupling protein Mfd [marine gamma
proteobacterium HTCC2207]
Length = 1173
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G +V+ HGVG + EV EF + + L VPV I R
Sbjct: 500 ELQHGAPVVHMDHGVGRFQGLVTLEVDKSVQEFL-MLVYANDAKLYVPVSSLHLI-SRFG 557
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ KL K + K AE++ R ++ +
Sbjct: 558 GGDQSMAPLHKLGTDK-----------WSKAKEKAAKQIRDTAAELLDIYARRAARKGFA 606
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ E + E + + EAI+ + +L S
Sbjct: 607 FNDN---EEDYRKFSGEFPFEETADQLEAIDAVRRDLLSPQP 645
>gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO]
gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium
1,230,933]
gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium
1,231,502]
gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium
1,231,410]
gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium
1,231,408]
gi|258614282|ref|ZP_05712052.1| transcription-repair coupling factor [Enterococcus faecium DO]
gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68]
gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162]
gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071]
gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636]
gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317]
gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium
TX0133a04]
gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium
TX0133a01]
gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO]
gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium
1,230,933]
gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium
1,231,502]
gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium
1,231,410]
gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium
1,231,408]
gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68]
gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071]
gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636]
gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317]
gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162]
gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium
TX0133a01]
gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium
TX0133a04]
Length = 1173
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 497 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SEA KA + + K++S ++++ +S+ +
Sbjct: 556 SEA------------KAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 604 FGPDDAYQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 642
>gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679]
gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679]
Length = 1173
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 497 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SEA KA + + K++S ++++ +S+ +
Sbjct: 556 SEA------------KAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 604 FGPDDAYQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 642
>gi|85705340|ref|ZP_01036439.1| transcription-repair coupling factor [Roseovarius sp. 217]
gi|85670213|gb|EAQ25075.1| transcription-repair coupling factor [Roseovarius sp. 217]
Length = 1150
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 47/166 (28%), Gaps = 19/166 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
Q G+ +V+ HG+G ++ AG E V+ + + L +PV +
Sbjct: 470 TEAQSLSIGDLVVHVDHGIGRYLGLEVVTAAGAAHECLVLEYA-ESSKLYLPVENIELLS 528
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
E L + G A Q A++ ++R +
Sbjct: 529 KY-----GHEEGFLDRLGGGA----------WQAKKARLKERIREMADRLIRVAAERALR 573
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + + AI + +L S S
Sbjct: 574 RAPVIEPEH---HAWEAFAARFPYQETDDQLHAIEDVLSDLGSGSP 616
>gi|326566625|gb|EGE16767.1| transcription-repair coupling factor [Moraxella catarrhalis BC1]
Length = 1184
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ ++ Q F G +V+ HG+G + +V + EF + +
Sbjct: 493 TRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYAD- 551
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VP+ IG S+ V K+ GK K L
Sbjct: 552 DASIYVPITNLALIGRYSGSDLQTV-SLSKIGSGK---------------WEKAKLKALE 595
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + S + A +I + EAI+ + ++
Sbjct: 596 QIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQS 655
Query: 173 SS 174
Sbjct: 656 KP 657
>gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis
W23144]
gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis
W23144]
Length = 1166
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 544
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 545 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 592
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + +SA + + + ++I+ I+ ++
Sbjct: 593 MSVGYQYGQDTAEQSA---FEHDFPYELTPDQSKSIDEIKGDMEKARP 637
>gi|149192400|ref|ZP_01870600.1| transcription-repair coupling factor [Vibrio shilonii AK1]
gi|148833765|gb|EDL50802.1| transcription-repair coupling factor [Vibrio shilonii AK1]
Length = 702
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 28/183 (15%)
Query: 3 FQQKRDA----------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
++K++ + G+ +V+ HG+G ++ E GM E +V +
Sbjct: 8 QRRKKEKRSINSDTVIRNLAELKPGQPVVHIDHGIGRYVGLQTLEAGGMTTE-YVTLEYQ 66
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VPV IG ++ E AK
Sbjct: 67 NDAKLYVPVASLNLIGRYSGGAEESA----------------PLNKLGSESWAKARRKAA 110
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +V +L ++ E + + + + +AIN + ++
Sbjct: 111 EKVRDVAAELLDVYAKRELKPGFKFSLDRDQYATFKAGFPFEETDDQAQAINAVMSDMCQ 170
Query: 172 KSS 174
+
Sbjct: 171 PKA 173
>gi|322688798|ref|YP_004208532.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
infantis 157F]
gi|320460134|dbj|BAJ70754.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
infantis 157F]
Length = 1194
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ + G+++V+ HG+G E++++ + E+ VI +
Sbjct: 495 PKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRIIGTGANKTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +EA + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ ++S ++ + + + I+ ++ ++
Sbjct: 601 EIADDLIKLYSARQRAKGFAFSPDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|313884578|ref|ZP_07818339.1| transcription-repair coupling factor [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620362|gb|EFR31790.1| transcription-repair coupling factor [Eremococcus coleocola
ACS-139-V-Col8]
Length = 1181
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+++V+ HGVG T ++ E+ G+ + ++ + +PV K
Sbjct: 494 KIKSYNELSVGDYVVHLNHGVGRYTGMETLEMNGVHRDML-AIEYQNNARVLIPVDKIHL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I SE K + + K+ + ++++ + +
Sbjct: 553 IQKYVSSE------------SKTPKINKLGGTEWAKTKQKVQATVEDIADDLIKLYAKRE 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +S +S + V + + + I+ ++
Sbjct: 601 AEKGYRFSPDTPEQS---EFEQAFGFVETPDQLTSSQEIKADMEKSRP 645
>gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15]
gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15]
Length = 1173
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 497 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SEA KA + + K++S ++++ +S+ +
Sbjct: 556 SEA------------KAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 604 FGPDDAYQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 642
>gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium
1,231,501]
gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium
1,231,501]
Length = 1173
Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 497 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SEA KA + + K++S ++++ +S+ +
Sbjct: 556 SEA------------KAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 604 FGPDDAYQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 642
>gi|21909542|ref|NP_663810.1| putative transcription-repair coupling factor [Streptococcus
pyogenes MGAS315]
gi|21903722|gb|AAM78613.1| putative transcription-repair coupling factor [Streptococcus
pyogenes MGAS315]
Length = 1139
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 459 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQISSLSKYVS 517
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 518 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 565
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 566 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 604
>gi|169830290|ref|YP_001716272.1| transcription-repair coupling factor [Candidatus Desulforudis
audaxviator MP104C]
gi|169637134|gb|ACA58640.1| transcription-repair coupling factor [Candidatus Desulforudis
audaxviator MP104C]
Length = 1176
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +V+ HG+G I E+ +K E+ +I + + L VP + + +
Sbjct: 501 LAPGDFVVHVNHGIGRYHGIVLLEIGEVKREYLLINYLGED-KLYVPTDQLGLVQKYIGA 559
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
E R R S A+ ++ E+++ S P +
Sbjct: 560 E-----------GETPRCSRLGGSEWAR-SKKRVREAVREMAQELLKLYAARQSLPGYRF 607
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + +AI ++ ++
Sbjct: 608 PADNPWQREFEL---AFPFEETPDQLKAIMQVKKDMERPRP 645
>gi|306826404|ref|ZP_07459718.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
10782]
gi|304431399|gb|EFM34394.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
10782]
Length = 1167
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ +V G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQVQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|227544685|ref|ZP_03974734.1| transcription-repair coupling factor [Lactobacillus reuteri
CF48-3A]
gi|300909073|ref|ZP_07126536.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
gi|227185331|gb|EEI65402.1| transcription-repair coupling factor [Lactobacillus reuteri
CF48-3A]
gi|300894480|gb|EFK87838.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
Length = 1179
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 59/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G + IK EV + ++ +I +D + VPV + +
Sbjct: 498 TDLKPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIIN-YRDNAQIYVPVTQLNLVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + +++S E+V + +++
Sbjct: 557 SSE------------SKTPHINKLGGNEWAKTKRRVSSKIEDIADELVDLYAKREAEKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + +I+ I+ ++
Sbjct: 605 AFPKDDYLQ---KQFDANFPYNETRDQLRSIDEIKEDMEKPKP 644
>gi|209558593|ref|YP_002285065.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
gi|209539794|gb|ACI60370.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
Length = 1139
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 459 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 517
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 518 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 565
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 566 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 604
>gi|146282996|ref|YP_001173149.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
A1501]
gi|145571201|gb|ABP80307.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
A1501]
Length = 1148
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G EF ++ + + L VPV I
Sbjct: 474 TELREGAPVVHIDHGVGRYQGLVTLEIEGQAQEFLLLQYAD-EAKLYVPVASLHLIARYT 532
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 533 GSDDALAP------------LHKLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARQGY 580
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Q+ + + AI+ + +L S
Sbjct: 581 AFKDPQV---DYETFAAGFPFEETPDQQAAIDAVREDLLSAKP 620
>gi|19745206|ref|NP_606342.1| transcription-repair coupling factor [Streptococcus pyogenes
MGAS8232]
gi|19747295|gb|AAL96841.1| putative transcription-repair coupling factor [Streptococcus
pyogenes MGAS8232]
Length = 1167
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|139472894|ref|YP_001127609.1| transcription-repair coupling factor [Streptococcus pyogenes str.
Manfredo]
gi|134271140|emb|CAM29350.1| putative transcription-repair coupling factor [Streptococcus
pyogenes str. Manfredo]
Length = 1167
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ +V G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQVQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + A V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFAFVETEDQLRSIKEIKADMESMQP 632
>gi|153010961|ref|YP_001372175.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC
49188]
gi|151562849|gb|ABS16346.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC
49188]
Length = 1170
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KRD + G+ +V+ HG+G +K AG + I + L
Sbjct: 487 SKRRKRDQDFISEVASLNAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRL 545
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + + L + G A Q AK+ L
Sbjct: 546 FLPVENIELLSRY---GSESSDAVLDKLGGGA----------WQMRKAKLKKRLLEIAGH 592
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + + AI + +L++
Sbjct: 593 LIQIAAERQMRGAPVMTPPDGL---YAEFSARFPYDETDDQLTAIESVADDLAAGKP 646
>gi|167646581|ref|YP_001684244.1| transcription-repair coupling factor [Caulobacter sp. K31]
gi|167349011|gb|ABZ71746.1| transcription-repair coupling factor [Caulobacter sp. K31]
Length = 1155
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R A G+ +V+ HG+G +K +V G + + L
Sbjct: 467 PRKKRRAANFLAEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCL-DLLYGGEAKL 525
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + ++ W R S +
Sbjct: 526 YLPVENIDLLTRYGTDAENVQL---------DKLGGAAWQGR--------KSKAKERLRV 568
Query: 118 VVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L + + + E + + + AI + +L S
Sbjct: 569 MAEGLIQIAAARQLKSVEETDPPHGVFDEFCARFPYEETDDQLSAIADVLEDLGSGKP 626
>gi|157150453|ref|YP_001451365.1| transcription-repair coupling factor [Streptococcus gordonii str.
Challis substr. CH1]
gi|157075247|gb|ABV09930.1| transcription-repair coupling factor [Streptococcus gordonii str.
Challis substr. CH1]
Length = 1167
Score = 97.5 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ + +V ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGIHRD-YVTIQYQNADRVSIPVDQIQLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ S
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKTKQKVQHQVEDIADDLIKLYAERSQLEGFS 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + V + + +I I+ ++ SK
Sbjct: 598 FSSD---DENQIEFDNDFPYVETEDQLRSIQEIKKDMESKQP 636
>gi|323141388|ref|ZP_08076279.1| CarD-like protein [Phascolarctobacterium sp. YIT 12067]
gi|322414137|gb|EFY04965.1| CarD-like protein [Phascolarctobacterium sp. YIT 12067]
Length = 161
Score = 97.2 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP HG I +I+ G ++++++ D M + VPV A +G+R +
Sbjct: 1 MFAMGDRVVYPLHGGAIIKDIEAHIQDGETVKYYILQMLFDNMTVSVPVENAEKLGLRYI 60
Query: 73 SEAHF---VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ L V VK W+RR Q Y KI SG + +A + + L + +
Sbjct: 61 GDDETLAIIQNTLHEVPDVQTVKAISWNRRFQLYMQKIKSGSVAEVARIFKILTILERRK 120
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ S ER+L S + EI + + +A N +E
Sbjct: 121 KISVGERRLLHSTKQILQSEIMLIKDVDAEKAGNWLER 158
>gi|148653434|ref|YP_001280527.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
gi|148572518|gb|ABQ94577.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
Length = 1271
Score = 97.2 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ + + F G +V+ G+G + ++ + EF + +
Sbjct: 574 TRRRRQSDVSEEFLVKSVTELTEGSPVVHIDQGIGRYHGLITLDIGEGEQEFIHLKYAD- 632
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VPV I + K+ GK K L
Sbjct: 633 DASIYVPVANLQLISRYSGGDPALA-PLHKIGSGK---------------WDKAKQKALE 676
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + E+A + A + + AI+ + ++
Sbjct: 677 QIHDVAAELLNMQARRQAKEGIHFKVETAQYELFASQFAFEETPDQANAIDAVMHDMKQN 736
Query: 173 SS 174
Sbjct: 737 KP 738
>gi|291548411|emb|CBL21519.1| Transcriptional regulators, similar to M. xanthus CarD
[Ruminococcus sp. SR1/5]
Length = 183
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 61/174 (35%), Gaps = 7/174 (4%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGM 69
+ F TGE++VY G+ +T + V G E ++V+ + + +
Sbjct: 6 KMFETGEYVVYGRTGICQVTGVTTMRVDGSSGEKLYYVLRPGGETDGKIFTPVEGGKQVL 65
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
R + ER + + + R Y I + + + +++ ++
Sbjct: 66 RGIITREEAERLIDEIPSIETLSIENEKFREDSYKKCIRTCECRDLLRIIKTIYVRKQAR 125
Query: 130 EKS-----YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
++ + + A + + E + + I + + IE + + E+
Sbjct: 126 LSHGKKTTATDERYLKLAEDHLYSEFSMLLDIPKEHMADYIEQRVHQQEEAEEQ 179
>gi|189346300|ref|YP_001942829.1| transcription-repair coupling factor [Chlorobium limicola DSM 245]
gi|189340447|gb|ACD89850.1| transcription-repair coupling factor [Chlorobium limicola DSM 245]
Length = 1116
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 54/175 (30%), Gaps = 19/175 (10%)
Query: 3 FQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++ + + + G+++V+ +G+G ++ V + E V+ + L V
Sbjct: 402 KRKIKGISLKDLHRLKIGDYVVHEDYGIGIFKSLETITVGNSEQEC-VLVEYEGGDQLFV 460
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
V + +E G + S + K+ ++
Sbjct: 461 NVQNINLLSKYTAAE------------GALPSLSKLGSSKWAAKKEKVRKKIRDIAINLI 508
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R +P ++ ++ + + + +AI ++ ++
Sbjct: 509 RLYAERTMKPGFAFCADTIF---MREFEASFIFEETPDQLKAIEEVKADMQKPHP 560
>gi|270159982|ref|ZP_06188638.1| transcription-repair coupling factor [Legionella longbeachae
D-4968]
gi|289165275|ref|YP_003455413.1| Transcription-repair coupling factor [Legionella longbeachae
NSW150]
gi|269988321|gb|EEZ94576.1| transcription-repair coupling factor [Legionella longbeachae
D-4968]
gi|288858448|emb|CBJ12326.1| Transcription-repair coupling factor [Legionella longbeachae
NSW150]
Length = 1146
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G +V+ GVG ++ E GM EF V+A+ + + VPV I
Sbjct: 475 DMAELRIGSPVVHLQFGVGRYQGLQHIESNGMASEFLVLAYAGED-KIYVPVTSLHLISR 533
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ ++ W R ++ KI+ + + + + Q
Sbjct: 534 YTGVDSEHAP--------LHKLGSDQWQREKKKAAEKIHDVAIELLDLYAKREAQPGHQY 585
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +S+ + + + AI I ++ S
Sbjct: 586 QVDHSD-------YAKFASGFPFTETPDQLNAIEQIIKDMESSKP 623
>gi|293400065|ref|ZP_06644211.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306465|gb|EFE47708.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 1149
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q G+++V+ HG+G I +EV G+ +F I K L VP+ + I RK
Sbjct: 477 QELHIGDYVVHNQHGIGKYLGIVNKEVDGIHKDFLHI-AYKGDDVLLVPLEQFQLI--RK 533
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
L + K IAE+ L + ++
Sbjct: 534 FVSKEGAAPKLNKLGSGE--------------WEKTKKKVSAKIAELADRLIHLYANRDE 579
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++A+ + + +I + +A+ I+ ++ S
Sbjct: 580 HIGHAFAKDTAMQKEFEDDFDYELTIDQAKAVKEIKSDMESSKP 623
>gi|262281636|ref|ZP_06059405.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
gi|262262090|gb|EEY80787.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
Length = 1167
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ + +V ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGIHRD-YVTIQYQNADRVSIPVDQIQLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ S
Sbjct: 550 S------------DGKTPKVNKLNDGRFQKTKQKVQHQVEDIADDLIKLYAERSQLEGFS 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + V + + +I I+ ++ SK
Sbjct: 598 FSSD---DENQIEFDNDFPYVETEDQLRSIQEIKKDMESKQP 636
>gi|171743238|ref|ZP_02919045.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
27678]
gi|283455784|ref|YP_003360348.1| transcription-repair coupling factor [Bifidobacterium dentium Bd1]
gi|171278852|gb|EDT46513.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
27678]
gi|283102418|gb|ADB09524.1| Transcription-repair coupling factor [Bifidobacterium dentium Bd1]
Length = 1173
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 20/182 (10%), Positives = 60/182 (32%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDK--- 54
++++ ++G+++V+ HG+G E++++ + E+ VI + +K
Sbjct: 480 PKRRRKAIDLMELKSGDYVVHEQHGIGRFVEMRQRTIGTGANKTTREYLVIEYAPNKRGA 539
Query: 55 --MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + I +EA + + AK
Sbjct: 540 PADKLFIPTDQLDQISKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 585
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ P ++ + ++ + + + I+ ++ ++
Sbjct: 586 EIAEDLVKLYSARQRTPGYAFGKDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMERS 642
Query: 173 SS 174
Sbjct: 643 VP 644
>gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D
str. JGS1721]
gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D
str. JGS1721]
Length = 1168
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ G+G IK+ EV G K ++ I L VPV +
Sbjct: 494 KIKSFAELKPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIE-YSKGDKLYVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S++ + + + G Q+ AK+ ++V+
Sbjct: 553 VQKYIGSDSASPK--ISKLGGNE----------WQKAKAKVRKSINDIAGDLVKLYAERS 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S+ ++ + E + + AI I+ ++ +
Sbjct: 601 TVKGYKFSKDTQWQ---KQFEDEFPYEETPDQLSAIEDIKSDMEANK 644
>gi|331268338|ref|YP_004394830.1| transcription-repair coupling factor [Clostridium botulinum
BKT015925]
gi|329124888|gb|AEB74833.1| transcription-repair coupling factor [Clostridium botulinum
BKT015925]
Length = 1169
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 61/175 (34%), Gaps = 19/175 (10%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+K + + G+++V+ HG+G IK+ EV G K ++ L V
Sbjct: 487 TNKKGIGKIKSFAELKPGDYVVHTNHGIGVYKGIKQLEVQGHKKDYL-ELSYTAGDTLYV 545
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV + + SE GK+ + + K+ E+V
Sbjct: 546 PVEQLDLVQKYIGSE------------GKSPKVNKLGGSEWTKAKTKVKKAINEIAEELV 593
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +++ +++ + E + + AI I+ ++ S +
Sbjct: 594 KLYAIRSTLKGHKFNKDTIWQ---KQFEEEFPYDETPDQLTAIQEIKADMESGKA 645
>gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B
str. ATCC 3626]
gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E
str. JGS1987]
gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E
str. JGS1987]
gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B
str. ATCC 3626]
Length = 1168
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ G+G IK+ EV G K ++ I L VPV +
Sbjct: 494 KIKSFAELKPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIE-YSKGDKLYVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S++ + + + G Q+ AK+ ++V+
Sbjct: 553 VQKYIGSDSASPK--ISKLGGNE----------WQKAKAKVRKSINDIAGDLVKLYAERS 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S+ ++ + E + + AI I+ ++ +
Sbjct: 601 TVKGYKFSKDTQWQ---KQFEDEFPYEETPDQLSAIEDIKSDMEANK 644
>gi|225181416|ref|ZP_03734859.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
1]
gi|225167814|gb|EEG76622.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
1]
Length = 1177
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 56/162 (34%), Gaps = 18/162 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q + G+ +V+ HG+G ++ +V G + ++ L +P+ + + RK
Sbjct: 502 QELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRDYL-YIQYSGNDKLYIPIEQIDVV--RK 558
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + G +++ + ++ E+ ++L + E
Sbjct: 559 YIGVEGKKPKMSALGGGE--------------WSRVKARVQASVQELAKELLALYAARET 604
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + + + +AI ++ ++
Sbjct: 605 EPGHAFSPDHSWQKDFEAAFPYEETPDQLQAIAEVKQDMEKS 646
>gi|50955304|ref|YP_062592.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli
str. CTCB07]
gi|50951786|gb|AAT89487.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 1204
Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 58/174 (33%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ ++K + G+H+V+ HG+G E+ ++EV+ + + L+
Sbjct: 503 LATRRKSVVDPLQLKPGDHVVHETHGIGRFVELTQREVSSGGRNAVKSKREY--LVLEYA 560
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G + ++ + V G+A M + E+V+
Sbjct: 561 PSKRGYPGDKLYVPTDQLDLLTRYVGGEAPQLSKMGGSDWAAAKGRARRAVRDIAVELVK 620
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S++ ++ + + + + I+ ++ ++
Sbjct: 621 LYSARMSSKGHSFAPDTPWQR---ELEEAFPFAETPDQLQTIDEVKADMERPIP 671
>gi|324991860|gb|EGC23783.1| transcription-repair coupling factor [Streptococcus sanguinis
SK405]
gi|324996250|gb|EGC28160.1| transcription-repair coupling factor [Streptococcus sanguinis
SK678]
gi|325698026|gb|EGD39907.1| transcription-repair coupling factor [Streptococcus sanguinis
SK160]
gi|327458484|gb|EGF04834.1| transcription-repair coupling factor [Streptococcus sanguinis SK1]
gi|327490344|gb|EGF22131.1| transcription-repair coupling factor [Streptococcus sanguinis
SK1058]
Length = 1167
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSK--- 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
GK + R Q+ K+ ++++ +
Sbjct: 547 ---------FVASDGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|254440320|ref|ZP_05053814.1| transcription-repair coupling factor [Octadecabacter antarcticus
307]
gi|198255766|gb|EDY80080.1| transcription-repair coupling factor [Octadecabacter antarcticus
307]
Length = 1177
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +++R Q G+ +V+ HGVG ++ AG E V+ + + L
Sbjct: 489 TKRKRRAENFLTETQSLTLGDLVVHVDHGVGRYLGLEVITAAGAAHECLVLEYA-ESSRL 547
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + L + G A Q AK+
Sbjct: 548 YLPVENIELLSRY-----GHEVGLLDKLGGGA----------WQAKKAKLKERIREMAER 592
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + E E + + + + AI + +L S
Sbjct: 593 LIRVAAERELR---TAPELTPPEDMWEQFLARFPYAETDDQLSAIEDVLDDLGSGKP 646
>gi|253698851|ref|YP_003020040.1| transcription-repair coupling factor [Geobacter sp. M21]
gi|251773701|gb|ACT16282.1| transcription-repair coupling factor [Geobacter sp. M21]
Length = 1157
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 60/176 (34%), Gaps = 18/176 (10%)
Query: 1 MTFQQKRD--AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++ +K+ + G+H+V+ GV ++ + G++ +F ++ + L
Sbjct: 481 LSEAKKQQLLTSLAELKPGDHMVHVDFGVAIYRGLQHLSLTGLEGDFLLLEYAGGD-KLY 539
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+PV + + +E G + + ++ AK + AE+
Sbjct: 540 LPVDRINLVQRYVGAE------------GIEPRLDRLGAAGWEKAKAKARAEVQEMAAEL 587
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Q +S A + + AI+ + ++ S
Sbjct: 588 LKIHAAREVQQGFKFSPADDM---YRAFEASFAFEETPDQAAAIDQVIADMESPRP 640
>gi|197116614|ref|YP_002137041.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
gi|197085974|gb|ACH37245.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
Length = 1157
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 59/172 (34%), Gaps = 18/172 (10%)
Query: 5 QKRD--AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+K+ + G+H+V+ GV ++ + G++ +F ++ + L +PV
Sbjct: 485 KKQQLLTSLAELKPGDHMVHVDFGVAIYRGLQHLSLTGLEGDFLLLEYAGGD-KLYLPVD 543
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + +E G + + ++ AK + AE+++
Sbjct: 544 RINLVQRYVGAE------------GIEPRLDRLGAAGWEKAKAKARAEVQEMAAELLKIH 591
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q +S A + + +AI+ + ++ S
Sbjct: 592 AAREVQQGFKFSPADDM---YRAFEASFAFEETPDQAQAIDQVIADMESPRP 640
>gi|114320951|ref|YP_742634.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227345|gb|ABI57144.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii
MLHE-1]
Length = 1166
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G +V+ HGVG ++ E G+ EF + + K L VPV I
Sbjct: 487 DLTDLAIGAPVVHEDHGVGRYLGLQTLEAGGLTTEFLTLEYAKGD-KLYVPVASLHLISR 545
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+E G A + S + ++ + A AE++ D++ +
Sbjct: 546 YTGAE------------GDAVPVHQLGSDKWEKAKKRAAKRARDAAAELL-DIYARRAAR 592
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E E + + + + AI +E ++ S
Sbjct: 593 EGHAYEWR--DEDYQAFADAFPFEETPDQESAIAAVEADMRSSRP 635
>gi|260437232|ref|ZP_05791048.1| transcriptional regulator, CarD family [Butyrivibrio crossotus DSM
2876]
gi|292810545|gb|EFF69750.1| transcriptional regulator, CarD family [Butyrivibrio crossotus DSM
2876]
Length = 162
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 17/162 (10%), Positives = 55/162 (33%), Gaps = 5/162 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ + +VY +GV ++ I + ++ + +K + + I MR++
Sbjct: 1 MFQINDLVVYGKNGVCSVKGIGTLSLINNDRIYYTLVPVYNKEEIIYAPVENGRIVMREV 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-----S 127
+ + + R Y + + +A +++ ++
Sbjct: 61 ISREDAKELIDIFPDLEETVVADERDRENCYKQTLLGCNCEKLASMIKTIYNRKCKRISE 120
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + + + + A ++ E+A + + + +I
Sbjct: 121 GKKVTVVDEKYFRQAEEQLFGELAFALDVDKTKISEMISERF 162
>gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC
8239]
gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC
8239]
Length = 1168
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ G+G IK+ EV G K ++ I L VPV +
Sbjct: 494 KIKSFAELKPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIE-YSKGDKLYVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S++ + + + G Q+ AK+ ++V+
Sbjct: 553 VQKYIGSDSASPK--ISKLGGNE----------WQKAKAKVRKSINDIAGDLVKLYAERS 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S+ ++ + E + + AI I+ ++ +
Sbjct: 601 TVKGYKFSKDTQWQ---KQFEDEFPYEETPDQLSAIEDIKSDMEANK 644
>gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU144]
Length = 1166
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 544
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 545 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 592
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + +SA + + + ++I+ I+ ++
Sbjct: 593 MSVGYQYGQDTAEQSA---FEHDFPYELTPDQSKSIDEIKGDMERARP 637
>gi|325981304|ref|YP_004293706.1| transcription-repair coupling factor [Nitrosomonas sp. AL212]
gi|325530823|gb|ADZ25544.1| transcription-repair coupling factor [Nitrosomonas sp. AL212]
Length = 1154
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 22/170 (12%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ G+ +V+ HG+G + +V G EF L VPV +
Sbjct: 477 DLSEIKPGDPVVHEQHGIGRYLGLISMDVGEGEPGELSEFL-SLEYDGGDKLYVPVSQLY 535
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
IG + L + K + + + +L
Sbjct: 536 LIGRYSGAAPESAP--LHKLGSGQ--------------WDKAKRKAMQQVRDTAAELLNL 579
Query: 126 DSQPEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Q + + + + AI + +L+S
Sbjct: 580 YAQRAAREGHTFTLKQHDYDAFAEGFGFEETADQAAAIKAVIEDLTSGKP 629
>gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis
BCM-HMP0060]
gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis
BCM-HMP0060]
Length = 1166
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 544
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 545 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 592
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + +SA + + + ++I+ I+ ++
Sbjct: 593 MSVGYQYGQDTAEQSA---FEHDFPYELTPDQSKSIDEIKGDMERARP 637
>gi|254468808|ref|ZP_05082214.1| transcription-repair coupling factor [beta proteobacterium KB13]
gi|207087618|gb|EDZ64901.1| transcription-repair coupling factor [beta proteobacterium KB13]
Length = 1120
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HGVG + + ++ G EF ++ ++K+ L VPV + I
Sbjct: 450 DLSEISVGDPVVHENHGVGRYQGLVQLDMLGSINEFLLLTYEKED-KLYVPVTQLNSISR 508
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ S + ++ K AE++ + +
Sbjct: 509 YTGGPIESAP------------LHKLGSGQWEKEKRKALKQVYDTAAELLNLYALREKKK 556
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + E + + AI + ++ S
Sbjct: 557 GLVSKIDFL---EYQKFANEFPFEETPDQMLAIESVIKDMESARP 598
>gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus 68-397]
gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M876]
gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C160]
gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M899]
gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C427]
gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C101]
gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M809]
gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M1015]
gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MN8]
gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus 68-397]
gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M876]
gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C101]
gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C427]
gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M899]
gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C160]
gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M1015]
gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M809]
gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MN8]
gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH60]
Length = 1168
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV + ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQIHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|306823175|ref|ZP_07456551.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
27679]
gi|309801612|ref|ZP_07695733.1| transcription-repair coupling factor [Bifidobacterium dentium
JCVIHMP022]
gi|304553807|gb|EFM41718.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
27679]
gi|308221744|gb|EFO78035.1| transcription-repair coupling factor [Bifidobacterium dentium
JCVIHMP022]
Length = 1173
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 58/182 (31%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++++ ++G+++V+ HG+G E++++ + E+ VI +
Sbjct: 480 PKRRRKAIDLMELKSGDYVVHEQHGIGRFVEMRQRTIGTGANKTTREYLVIEYAPSKRGA 539
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + I +EA + + AK
Sbjct: 540 PADKLFIPTDQLDQISKYIGAEAPKLNKL--------------GGSDWAATKAKARKHVH 585
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ P ++ + ++ + + + I+ ++ ++
Sbjct: 586 EIAEDLVKLYSARQRTPGYAFGKDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMERS 642
Query: 173 SS 174
Sbjct: 643 VP 644
>gi|303239799|ref|ZP_07326323.1| transcription-repair coupling factor [Acetivibrio cellulolyticus
CD2]
gi|302592736|gb|EFL62460.1| transcription-repair coupling factor [Acetivibrio cellulolyticus
CD2]
Length = 1177
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ K+ + G+ +V+ +HG+G I++ V +K ++ I +D L VP
Sbjct: 500 SKGKKINVFTDLNIGDFVVHQSHGIGKYIGIEQLVVENIKKDYLKI-QYQDDAFLYVPTN 558
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ I SE GK+ + + K E+++
Sbjct: 559 QLDIIQKYIGSE------------GKSPKLSKLGGSDWIKTKTKAKESLKELAEELIKLY 606
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ +++ + + + + + I I+ ++ S
Sbjct: 607 AMREASEGHAFGSDTIWQ---KQFEEQFPYQETDDQLKCIEEIKRDMESNKP 655
>gi|255524039|ref|ZP_05391001.1| transcription-repair coupling factor [Clostridium carboxidivorans
P7]
gi|296186896|ref|ZP_06855297.1| transcription-repair coupling factor [Clostridium carboxidivorans
P7]
gi|255512326|gb|EET88604.1| transcription-repair coupling factor [Clostridium carboxidivorans
P7]
gi|296048610|gb|EFG88043.1| transcription-repair coupling factor [Clostridium carboxidivorans
P7]
Length = 1173
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ HG+G IK+ E+ G K ++ + L VPV +
Sbjct: 497 KIKSFAELKPGDYVVHANHGIGVYKGIKQLELQGHKKDYL-ELIYESDDKLYVPVEQLDM 555
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ +E GK + S + K+ ++V+
Sbjct: 556 VQKYIGTE------------GKIPKINKLGSAEWAKAKKKVKKSIEEIAEDLVKLYAVRS 603
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ YS+ +++ + E + + +I I+ ++ S
Sbjct: 604 TLKGYKYSKDTVWQ---KQFEEEFPYEETPDQVTSIEDIKSDMESDKP 648
>gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU028]
Length = 1166
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 544
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 545 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 592
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + +SA + + + ++I+ I+ ++
Sbjct: 593 MSVGYQYGQDTAEQSA---FEHDFPYELTPDQSKSIDEIKGDMERARP 637
>gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU045]
Length = 1166
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 544
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 545 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 592
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + +SA + + + ++I+ I+ ++
Sbjct: 593 MSVGYQYGQDTAEQSA---FEHDFPYELTPDQSKSIDEIKGDMERARP 637
>gi|297528423|ref|YP_003669698.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
gi|297251675|gb|ADI25121.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
Length = 1177
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G I+ E+ G+ ++ I + L VPV + +
Sbjct: 499 ELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHI-QYQGGDTLYVPVDQIDQVQKYVG 557
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + ++ K+ S ++++ ++ +
Sbjct: 558 SE------------GKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREASKGYA 605
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 606 FSPDTEMQR---EFEAAFPYQETEDQLRSIEEIKRDMESDKP 644
>gi|261417548|ref|YP_003251230.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
gi|319765205|ref|YP_004130706.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
gi|261374005|gb|ACX76748.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
gi|317110071|gb|ADU92563.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
Length = 1177
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G I+ E+ G+ ++ I + L VPV + +
Sbjct: 499 ELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHI-QYQGGDTLYVPVDQIDQVQKYVG 557
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + ++ K+ S ++++ ++ +
Sbjct: 558 SE------------GKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREASKGYA 605
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + +I I+ ++ S
Sbjct: 606 FSPDTEMQR---EFEAAFPYQETEDQLRSIEEIKRDMESDKP 644
>gi|164685710|ref|ZP_01946737.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat
Q177']
gi|212218583|ref|YP_002305370.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154]
gi|164601218|gb|EAX32680.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat
Q177']
gi|212012845|gb|ACJ20225.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154]
Length = 1157
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ HGVG ++ + + + E+ + + + + VPV I
Sbjct: 489 TELHIGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSSLYLISRYA 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++A + + S++ ++ K A AE++ R +
Sbjct: 548 GADASHAP------------LQKLGSKQWEKIKEKTQKHIRDAAAELLDIYSRRQAATGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++S + E + + + + AIN + V++SSK
Sbjct: 596 TFS---IPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKR 634
>gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA252]
gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|81828081|sp|Q6GJG8|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus
aureus subsp. aureus MRSA252]
gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus EMRSA16]
Length = 1168
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV + ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQIHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 1172
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q + G+++V+ HGVG ++ EV + ++ I K L VPV + +
Sbjct: 495 QDLKIGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKI-QYKGTDQLFVPVDQMDQVQKYV 553
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + ++ AK+ E++ +
Sbjct: 554 ASE------------DKTPRLNKLGGTEWKKTKAKVQQSVEDIADELIELYREREMAQGY 601
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + + + + ++I I+ ++ +
Sbjct: 602 QYGAD---SEQQHEFEMDFPYDLTADQSKSIVEIKDDMEKERP 641
>gi|83311564|ref|YP_421828.1| transcription-repair coupling factor [Magnetospirillum magneticum
AMB-1]
gi|82946405|dbj|BAE51269.1| Transcription-repair coupling factor [Magnetospirillum magneticum
AMB-1]
Length = 1134
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 24/179 (13%)
Query: 2 TFQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++K+ A G+ +V+ HG+G + EV+G + +
Sbjct: 449 PARKKKKGAQFIAEASALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLRV-LYDGGDK 507
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VPV + R SE V ++ T W R + + I
Sbjct: 508 LFVPVENID-VLTRFGSEQAGV--------SLDKLGGTAWQARKAKLKKR--------IR 550
Query: 117 EVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ L +Q + E + E + + + AI +L+S
Sbjct: 551 DIADQLIGIAAQRKMRQGEALVPAEGLYDEFCARFPFAETEDQMRAIEDSIADLASGKP 609
>gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis
SK135]
gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis
SK135]
Length = 1169
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + +SA + + + ++I+ I+ ++
Sbjct: 596 MSVGYQYGQDTAEQSA---FEHDFPYELTPDQSKSIDEIKGDMERARP 640
>gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis
ATCC 12228]
gi|81842450|sp|Q8CMT1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis
ATCC 12228]
Length = 1169
Score = 97.2 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + +SA + + + ++I+ I+ ++
Sbjct: 596 MSVGYQYGQDTAEQSA---FEHDFPYELTPDQSKSIDEIKGDMERARP 640
>gi|322833632|ref|YP_004213659.1| transcription-repair coupling factor [Rahnella sp. Y9602]
gi|321168833|gb|ADW74532.1| transcription-repair coupling factor [Rahnella sp. Y9602]
Length = 1147
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 29/184 (15%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R R G+ +V+ HGVG + E G+ E+ ++ +
Sbjct: 455 ARRRQDSRRSINTDTLIRNLAELRPGQPVVHVEHGVGRYLGLTTLETGGITAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G+A +K
Sbjct: 515 GED-KLYVPVSSLHLISRYAGGADESAP--LHKLGGEA--------------WSKARQKA 557
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +V +L +Q E ++ A + + + +AIN + +++
Sbjct: 558 AEKVRDVAAELLDIYAQREAKSGFAFKHDKAQYQLFCQAFPFETTPDQAQAINAVLTDMT 617
Query: 171 SKSS 174
+
Sbjct: 618 QPLA 621
>gi|166031178|ref|ZP_02234007.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
27755]
gi|166029025|gb|EDR47782.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
27755]
Length = 1114
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ ++ + G+++V+ HG+G I++ EV + ++ I++ K L +P
Sbjct: 429 TYEGRKIQSFSELKPGDYVVHENHGLGIYQGIEKIEVDKISKDYMKISYAK-GGNLYIPA 487
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S K + ++ + AK+ ++V
Sbjct: 488 TQLDLIQKYAGS------------DSKKPKLNRLGTQEWTKTKAKVRGAVKEIAKDLVEL 535
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+Q Y E +++ M + + AIN ++ ++ S
Sbjct: 536 YAARQNQDGFVYGEDTVWQKEFEEM---FPYEETEDQLLAINAVKKDMESHK 584
>gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis
RP62A]
gi|81819455|sp|Q5HRQ2|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis
RP62A]
Length = 1169
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 548 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + +SA + + + ++I+ I+ ++
Sbjct: 596 MSVGYQYGQDTAEQSA---FEHDFPYELTPDQSKSIDEIKGDMERARP 640
>gi|322373973|ref|ZP_08048507.1| transcription-repair coupling factor [Streptococcus sp. C150]
gi|321276939|gb|EFX54010.1| transcription-repair coupling factor [Streptococcus sp. C150]
Length = 1168
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ +D + +PV + +
Sbjct: 489 ELEKGDYVVHQTHGIGQFKGIETIEIKGVHRDYL-TIQYQDAATISLPVEQIESLSKYVS 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q K++ ++++ +
Sbjct: 548 A------------DGKEPKINKLNDGRFQRTKQKVSKQVEDIADDLLKLYAERSQLKGFA 595
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A ++ + +I I+ ++ S
Sbjct: 596 FSPD---DDNQRDFEDDFAYAETVDQLRSIKEIKADMESDKP 634
>gi|24378538|ref|NP_720493.1| putative transcription-repair coupling factor [Streptococcus mutans
UA159]
gi|24376386|gb|AAN57799.1|AE014853_6 putative transcription-repair coupling factor [Streptococcus mutans
UA159]
Length = 1162
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ EV+G+ ++ ++ + +P+ + +
Sbjct: 487 ELEKGDYVVHNVHGIGRFLGIETIEVSGVHRDYL-TIQYQNADRISIPIEQIELLSKYVA 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q K++ ++++ +
Sbjct: 546 S------------DGKEPKINKLNDGRFQRIKQKVSKQVEDIADDLLKLYAERSQLKGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A V + + +I ++ ++
Sbjct: 594 FSPD---DKNQEEFDNDFAYVETEDQLRSIKEVKKDMEKDQP 632
>gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus E1410]
gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus E1410]
Length = 1168
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV + ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQIHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|257138824|ref|ZP_05587086.1| transcription-repair coupling factor [Burkholderia thailandensis
E264]
Length = 898
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 217 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAG-DSKLYVPVAQLHVISR 275
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + + I + +L ++
Sbjct: 276 YSGADPDSAP--LHALGSGQ--------------WERAKRRAAQQIRDTAAELLNLYARR 319
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S
Sbjct: 320 AAREGHAFALDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKP 365
>gi|127512559|ref|YP_001093756.1| transcription-repair coupling factor [Shewanella loihica PV-4]
gi|126637854|gb|ABO23497.1| transcription-repair coupling factor [Shewanella loihica PV-4]
Length = 1160
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ IV+ HGV ++ + G+ E+ + + L VPV I
Sbjct: 481 DLAELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGD-KLYVPVASLNLISQ 539
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + ++ E K + I +V +L ++
Sbjct: 540 YSVGADDAPQL----------------NKLGNESWTKAKRKAIEKIRDVAAELLDVYARR 583
Query: 130 EKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ E +L + ++ + AI+ + ++ S
Sbjct: 584 QARPGEACRLDREEYAQFAGSFPFEETVDQETAIDAVLTDMCSP 627
>gi|239833942|ref|ZP_04682270.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG
3301]
gi|239822005|gb|EEQ93574.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG
3301]
Length = 1171
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 54/177 (30%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KRD + G+ +V+ HG+G +K AG + I + L
Sbjct: 487 SKRRKRDQDFISEVASLSAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRL 545
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + + L + G A Q AK+ L +
Sbjct: 546 FLPVENIELLSRY---GSEGSDAVLDKLGGGA----------WQMRKAKLKKRLLEIAGQ 592
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + + AI + +L++
Sbjct: 593 LIQIAAERQMRGAPVMTPPDGL---YAEFAARFPYDETDDQLTAIESVADDLAAGKP 646
>gi|309790907|ref|ZP_07685449.1| transcription-repair coupling factor [Oscillochloris trichoides
DG6]
gi|308227021|gb|EFO80707.1| transcription-repair coupling factor [Oscillochloris trichoides
DG6]
Length = 1171
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 55/164 (33%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+G + G+++V+ HG+ + + V ++ E+ V+ + + VPV + +
Sbjct: 487 RGLKVGDYVVHIEHGIAIYDGLIRRTVGEIEREYLVLRYA-AGDKIYVPVDQIDRVTRYI 545
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ L + + + A+ ++ +DL +Q +
Sbjct: 546 GAGDSSP--TLTRLGTQD--------------WERAKRKARAAVQDLAQDLLALYAQRQT 589
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ R + + + + + ++ ++
Sbjct: 590 KRGHAFNPDNEWQRELEGSFPYIETEDQLRVLAEVKTDMEHDVP 633
>gi|282853612|ref|ZP_06262949.1| transcription-repair coupling factor [Propionibacterium acnes J139]
gi|282583065|gb|EFB88445.1| transcription-repair coupling factor [Propionibacterium acnes J139]
Length = 1209
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 517 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRAVGGATREYLV---------IEYAPSKKGQ 567
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ E+++
Sbjct: 568 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIATELIKLYAARQ 627
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + I ++ ++
Sbjct: 628 ATKGHAFGPDTAWQR---ELEDAFAYVETPDQLTTIADVKRDMEQVVP 672
>gi|262201520|ref|YP_003272728.1| transcription-repair coupling factor [Gordonia bronchialis DSM
43247]
gi|262084867|gb|ACY20835.1| transcription-repair coupling factor [Gordonia bronchialis DSM
43247]
Length = 1195
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 58/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ V+G + E+ V L+
Sbjct: 499 LPAKRRNQVDPLALTAGDLVVHDQHGIGKFVEMIERTVSGARREYLV---------LEYA 549
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ + Q K E+V+
Sbjct: 550 PSKRGQPGDRLYVPMDALDQLSRYVGGEQPSLSKLGGSDWQNTKRKARKAVREIAGELVQ 609
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + ++ + I ++ ++
Sbjct: 610 LYAARHAAPGHAFGPDTPWQQEME---DAFDFTETVDQMTVIGEVKADMERPVP 660
>gi|320094383|ref|ZP_08026169.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978684|gb|EFW10241.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
178 str. F0338]
Length = 1194
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 54/174 (31%), Gaps = 8/174 (4%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
M ++++ G++IV+ HG+G E+ + V A +D + ++
Sbjct: 502 MPSRRRKGVDPLTLHPGDYIVHEQHGIGRFVELVSRTVGRAD-----AAATRDYLVIEYA 556
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ K M + A+ E++R
Sbjct: 557 PSKRGQPGDRLFVPTDALDQISKYTGSDEPSLTKMGGADWAKTKARAKKAVNEVAKELIR 616
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + V + + I+ ++ ++
Sbjct: 617 LYAVRQQTKGHAFGPDTPWQR---ELEDAFPYVETPDQLVTIDEVKADMEKPVP 667
>gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis
FRI909]
Length = 1166
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKL-QYKGTDQLFVPVDQMDQ 544
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ +
Sbjct: 545 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKERE 592
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + +SA + + + ++I+ I+ ++
Sbjct: 593 MSVGYQYGQDTAEQSA---FEHDFPYELTPDQSKSIDEIKGDMERARP 637
>gi|296113202|ref|YP_003627140.1| transcription-repair coupling factor [Moraxella catarrhalis RH4]
gi|295920896|gb|ADG61247.1| transcription-repair coupling factor [Moraxella catarrhalis RH4]
Length = 1184
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ ++ Q F G +V+ HG+G + +V + EF + +
Sbjct: 493 TRRRRQSSISQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYAD- 551
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VP+ IG S+ V K+ GK K L
Sbjct: 552 DASIYVPITNLALIGRYSGSDLQTV-SLSKIGSGK---------------WEKAKLKALE 595
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + S + A +I + EAI+ + ++
Sbjct: 596 QIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQS 655
Query: 173 SS 174
Sbjct: 656 KP 657
>gi|297569280|ref|YP_003690624.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus
AHT2]
gi|296925195|gb|ADH86005.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus
AHT2]
Length = 1179
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ A GE +V+ HG+G +K + G+ ++ + L +PV +
Sbjct: 485 KAADFDELNPGELVVHRRHGIGIYQGLKPIAINGITNDYL-TIRYRGDDKLFIPVDQINS 543
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+G K + L + K +I ++++ +
Sbjct: 544 VGKYKGIAEQ--QPTLDKLGDKT----------WLATRNRIKKAVWQVAQDLLKLYAKRQ 591
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P S+S + + + + +AI+ + +L +
Sbjct: 592 LAPGTSFSTPGEL---YSELEESFPYDETPGQLKAIDEVLADLQADKP 636
>gi|326385186|ref|ZP_08206853.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
B-59395]
gi|326196090|gb|EGD53297.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
B-59395]
Length = 1193
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ V+G + E+ V ++
Sbjct: 498 LPAKRRNQVDPLALTAGDLVVHDQHGIGKFVEMIERTVSGARREYLV---------IEYA 548
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
GK G R +++ + V G+ + K E+VR
Sbjct: 549 PGKRGQPGDRLYVPMDALDQLSRYVGGEQPGLSKLGGSDWANTKRKARKAVREIAGELVR 608
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++S ++ + ++ + I ++ ++
Sbjct: 609 LYAARHAAPGFAFSADTPWQREME---DAFDYTETVDQMTVIGEVKSDMEKPVP 659
>gi|261367666|ref|ZP_05980549.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
15176]
gi|282570458|gb|EFB75993.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
15176]
Length = 1153
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQGFR------TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
T Q+K+ + G+ +V+ HG+G I+ V G+ ++ I K
Sbjct: 468 TAQKKKKRNKDALNSLSEISPGDLVVHQNHGIGRYAGIQRMAVQGVTKDYLRIE-YDKKD 526
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + + R + L + G AK A
Sbjct: 527 VLYVPVTQLDLL-SRYTAPGDKDNVKLSRLGGSD--------------WAKTRKKVRAAT 571
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++L ++ +++ + + A + + I+ ++
Sbjct: 572 EAMAKELIELYARRKQAKGYAFPADDTWQGDFEQRFAYEETPDQLTCAADIKHDMEQPWP 631
>gi|238754400|ref|ZP_04615756.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
gi|238707433|gb|EEP99794.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
Length = 1148
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 29/184 (15%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A ++
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADE--NAPLHKLGGDA--------------WSRARQKA 557
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +V +L +Q + + + + + +AIN + ++
Sbjct: 558 AEKVRDVAAELLDIYAQRAVKSGFKFKLDREQYPLFCQSFPFETTPDQEQAINAVLSDMC 617
Query: 171 SKSS 174
+
Sbjct: 618 QPLA 621
>gi|90419666|ref|ZP_01227576.1| transcription-repair coupling factor [Aurantimonas manganoxydans
SI85-9A1]
gi|90336603|gb|EAS50344.1| transcription-repair coupling factor [Aurantimonas manganoxydans
SI85-9A1]
Length = 1121
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 23/176 (13%)
Query: 4 QQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++KR A G G+ +V+ HG+G +K E AG + + L +
Sbjct: 434 RKKRAANFIAEASGLDEGDIVVHVDHGIGRFVGLKTIEAAGAPHDCL-ELRYQGDDRLFL 492
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV + E L + G A W R + + E+
Sbjct: 493 PVENIELLSRY---GGEGSEAMLDKLGGGA------WQARKAKLKK--------QLLEMA 535
Query: 120 RDLHRTDSQPEKSYSERQL-YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L R + + + R L E + + + AI+ + +L++
Sbjct: 536 DGLIRIAAARQMRGAPRLLPPEGLWDEFAARFPYEETEDQLNAIDAVADDLAAGRP 591
>gi|270490329|ref|ZP_06207403.1| transcription-repair coupling factor [Yersinia pestis KIM D27]
gi|270338833|gb|EFA49610.1| transcription-repair coupling factor [Yersinia pestis KIM D27]
Length = 901
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 208 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 267
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I + S K
Sbjct: 268 GED-KLYVPVSSLHLISRYSGGADDNAP------------LHRLGSDVWSRARQKAAEKV 314
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + + + + + + + +AIN + ++
Sbjct: 315 RDVAAELLDIYAQRAVKSGFKFKHDR---EQYQLFCQSFPFETTPDQEQAINAVLSDMCQ 371
Query: 172 KSS 174
+
Sbjct: 372 PLA 374
>gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE
str. F4969]
gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE
str. F4969]
Length = 1168
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ G+G IK+ EV G K ++ I L VPV +
Sbjct: 494 KIKSFAELKPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIE-YSKGDKLYVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S++ + + + G Q+ AK+ ++V+
Sbjct: 553 VQKYIGSDSASPK--ISKLGGNE----------WQKAKAKVRKSINDIAGDLVKLYAERS 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S+ ++ + E + + AI I+ ++ +
Sbjct: 601 TVKGYKFSKDTQWQ---KQFEDEFPYEETPDQLSAIEDIKSDMETNK 644
>gi|71066039|ref|YP_264766.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4]
gi|71039024|gb|AAZ19332.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4]
Length = 1243
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ + + F G +V+ HG+G + +V + EF + +
Sbjct: 547 TRRRRQSGVSEEFLVKSVTEITDGSPVVHIEHGIGRYNGLITLDVGDGEQEFIHLKYAN- 605
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VPV I + K+ GK K L
Sbjct: 606 DASIYVPVANLQMINRYSGGDPALA-PLHKIGSGK---------------WDKAKQKALE 649
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ E + S + A + + AI+ + ++
Sbjct: 650 QIHDVAAELLNMQARREAKVGIHFKIDPSQYELFASQFAFEETPDQANAIHAVMEDMRQN 709
Query: 173 SS 174
Sbjct: 710 QP 711
>gi|258593268|emb|CBE69607.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
mfd) [NC10 bacterium 'Dutch sediment']
Length = 1152
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q G+ +V+ HG+G +++ V G + ++ +I + L VP GK I
Sbjct: 470 QELTYGDFVVHEDHGIGVYKGLRQLTVGGTEGDYLLI-LYAEHAKLYVPTGKLHLIHRYA 528
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++++ + S + ++ + E++
Sbjct: 529 GADSN------------PPTLDRLGSASWAKAKERVKASVREMAQELLALYASRQVIKGH 576
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + +AI ++ ++
Sbjct: 577 ALPPDTPWQR---EFEAGFPYEETPDQLQAIADVKADMERDRP 616
>gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str.
13]
gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str.
13]
Length = 1162
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ G+G IK+ EV G K ++ I L VPV +
Sbjct: 488 KIKSFAELKPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIE-YSKGDKLYVPVEQLDL 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S++ + + + G Q+ AK+ ++V+
Sbjct: 547 VQKYIGSDSASPK--ISKLGGNE----------WQKAKAKVRKSINDIAGDLVKLYAERS 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S+ ++ + E + + AI I+ ++ +
Sbjct: 595 TVKGYKFSKDTQWQ---KQFEDEFPYEETPDQLSAIEDIKSDMEANK 638
>gi|89068292|ref|ZP_01155702.1| transcription-repair coupling factor [Oceanicola granulosus
HTCC2516]
gi|89046209|gb|EAR52267.1| transcription-repair coupling factor [Oceanicola granulosus
HTCC2516]
Length = 1151
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R Q G+ +V+ HGVG ++ AG E V+ + + L
Sbjct: 464 PKRKRRAENFLTETQSLGPGDLVVHVDHGVGRYRGLEVITAAGAAHECLVLEYA-EGAKL 522
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q A++
Sbjct: 523 YLPVENIELLSRY-----GHEEGLLDRLGGGA----------WQAKKARLKERIREMAER 567
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + + + AI + ++ + +
Sbjct: 568 LIRVAAERALRHAPILTPPDGL---WEQFLARFPYQETDDQLAAIEQVLEDMEAGTP 621
>gi|224369910|ref|YP_002604074.1| Mfd [Desulfobacterium autotrophicum HRM2]
gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2]
Length = 1165
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 62/172 (36%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ + + + G+ +V+ HG+G + ++ G+ +F +I+F +D L +PV
Sbjct: 486 RAKSQFITPEELKEGDIVVHLEHGLGRYEGLVTLKLEGISGDFILISF-RDDDRLYLPVD 544
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + G + + + + Q+ AK E+++
Sbjct: 545 RMEMVEKYIGV------------DGYSPILDKIGGKTWQKSRAKAKKEVEKMAGELLKLY 592
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + N + + +AI+ + V++ S+
Sbjct: 593 AERRVAKGFAFSRPDHF---FNDFEASFPFEETPDQLKAIDDVLVDMESERP 641
>gi|93006488|ref|YP_580925.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
K5]
gi|92394166|gb|ABE75441.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
K5]
Length = 1243
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ + + F G +V+ HG+G + +V + EF + +
Sbjct: 547 TRRRRQSGVSEEFLVKSVTEITDGSPVVHIEHGIGRYNGLITLDVGDGEQEFIHLKYAD- 605
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VPV I + K+ GK K L
Sbjct: 606 DASIYVPVANLQMINRYSGGDPALA-PLHKIGSGK---------------WDKAKQKALE 649
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ E + S + A + + AI+ + ++
Sbjct: 650 QIHDVAAELLNIQARREAKVGIHFKIDISQYELFASQFAFEETPDQASAIHAVMEDMKQN 709
Query: 173 SS 174
Sbjct: 710 QP 711
>gi|319638036|ref|ZP_07992800.1| transcription-repair coupling factor [Neisseria mucosa C102]
gi|317400681|gb|EFV81338.1| transcription-repair coupling factor [Neisseria mucosa C102]
Length = 1134
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G + ++ G E ++ + + L VPV + I
Sbjct: 461 DLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EAQLYVPVSQLHLISR 519
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S AL + A W++ ++ K A + +L+ +
Sbjct: 520 Y--SGQAHENVALHKLGSGA------WNKSKRKAAEKAR-----DTAAELLNLYAQRAAQ 566
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +L+
Sbjct: 567 SGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 609
>gi|255655277|ref|ZP_05400686.1| putative regulatory protein [Clostridium difficile QCD-23m63]
gi|296451261|ref|ZP_06893001.1| probable regulatory protein [Clostridium difficile NAP08]
gi|296880387|ref|ZP_06904350.1| probable regulatory protein [Clostridium difficile NAP07]
gi|296259867|gb|EFH06722.1| probable regulatory protein [Clostridium difficile NAP08]
gi|296428628|gb|EFH14512.1| probable regulatory protein [Clostridium difficile NAP07]
Length = 165
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRK 71
++ GE ++YP G + +I +++ +++ + + + +PV A IG+R
Sbjct: 1 MYKIGESVMYPKEGACCVNDIVTKKINHQMQKYYELSVIFNSNLKISIPVLNADRIGIRP 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + V++ ++ + V +R + Y K +SGD+ I ++++ L D +
Sbjct: 61 VMDGNDVDKFIQSIDKTDGVWVFDRKQRLKLYHDKFHSGDVFEIVKLIKMLMIQDCSKQL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
++++ A + E+AA S + ++ ++ + SK
Sbjct: 121 CSTDKEFLNKAQRFALSELAAAQCKSYTVVLEEMKKHILNSKSKN 165
>gi|50120752|ref|YP_049919.1| transcription-repair coupling factor [Pectobacterium atrosepticum
SCRI1043]
gi|49611278|emb|CAG74725.1| transcription-repair coupling factor [Pectobacterium atrosepticum
SCRI1043]
Length = 1149
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G+A K
Sbjct: 515 GED-KLYVPVSSLHLISRYAGGADE--NAPLHKLGGEA----------WSRARQKAAERV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ ++ + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAAKSGFAFKHD---KTQYQLFCESFPFETTPDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|163793172|ref|ZP_02187148.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
gi|159181818|gb|EDP66330.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
Length = 1162
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G+ +V+ HG+G + E+ G + + + L VPV +
Sbjct: 489 QEVAALEAGDFVVHAEHGIGQYIGLDTLEIGGAPHDCLRLVYAGGD-KLFVPVENIDVLS 547
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G A Q A++ ++ + +
Sbjct: 548 RY---GSEESNAQLDRLGGAA----------WQARKARVKKRLRDMAEGLIAIAAEREVR 594
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI+ + +L S
Sbjct: 595 RTQPL---NPPSGVYDEFCARFPYTETEDQLRAIDDVLSDLGSGKP 637
>gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC
13124]
gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC
13124]
Length = 1162
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ G+G IK+ EV G K ++ I L VPV +
Sbjct: 488 KIKSFAELKPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIE-YSKGDKLYVPVEQLDL 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S++ + + + G Q+ AK+ ++V+
Sbjct: 547 VQKYIGSDSASPK--ISKLGGNE----------WQKAKAKVRKSINDIAGDLVKLYAERS 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S+ ++ + E + + AI I+ ++ +
Sbjct: 595 TVKGYKFSKDTQWQ---KQFEDEFPYEETPDQLSAIEDIKSDMETNK 638
>gi|330999600|ref|ZP_08323311.1| transcription-repair coupling factor [Parasutterella
excrementihominis YIT 11859]
gi|329574453|gb|EGG56023.1| transcription-repair coupling factor [Parasutterella
excrementihominis YIT 11859]
Length = 1157
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HGVG + + EF I + K + L VPV + I
Sbjct: 488 DLSELKVGDPVVHLDHGVGRYRGLTSMSTPDGEAEFLQIDYAK-EAKLYVPVAQLHLISR 546
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + K + + + +L +
Sbjct: 547 YSGADPETAP--LHSLGKGD--------------WEKARKKAALQVRDTTAELLNIYALR 590
Query: 130 EKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A A + + AIN + ++ S
Sbjct: 591 QSRKGYAFKFSLADYEAFSEAFAFEETEDQLAAINAVYRDMISDKP 636
>gi|320352705|ref|YP_004194044.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
2032]
gi|320121207|gb|ADW16753.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
2032]
Length = 1177
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 61/168 (36%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+ +V+ HG+G + E++G + +F IAF +D L VPV +
Sbjct: 492 QPVQIEQLAEGDVVVHRDHGIGVFQGLVNMEISGQRGDFLQIAF-RDDDKLYVPVDRLHW 550
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + + + ++ S+R Q K+ E++ +
Sbjct: 551 VSRYQG------------LTDQQPKLDSLGSQRWQTTKKKVTEAVWKIAQELLEIYAQRA 598
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +S ++ + + +AI+ + +L+ +
Sbjct: 599 MRQGHRFSPPGDL---YRQLEESFPYDETKGQAKAIDEVIDDLTHEQP 643
>gi|149204032|ref|ZP_01881000.1| transcription-repair coupling factor [Roseovarius sp. TM1035]
gi|149142474|gb|EDM30519.1| transcription-repair coupling factor [Roseovarius sp. TM1035]
Length = 1150
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 19/166 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
Q G+ +V+ HG+G ++ AG E V+ + + L +PV +
Sbjct: 470 TEAQSLSVGDLVVHVDHGIGRYLGLEVVTAAGAAHECLVLEYA-ESSKLYLPVENIELLS 528
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
E L + G A Q A++ ++R +
Sbjct: 529 KY-----GHEEGLLDRLGGGA----------WQAKKARLKERIREMADRLIRVAAERALR 573
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + + AI + +L S +
Sbjct: 574 SAPVIEPEH---HAWEAFAARFPYQETDDQLHAIEDVLNDLGSGAP 616
>gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
35311]
gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
35311]
Length = 1181
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/184 (11%), Positives = 59/184 (32%), Gaps = 27/184 (14%)
Query: 1 MTFQQ--KRDAMRQG-------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
+T ++ ++ + G+++V+ HG+G ++ EV G+ + ++
Sbjct: 475 VTKKRTHRQTTPNAERLKSYNDLKVGDYVVHANHGIGKYIGMETLEVDGIHQD-YITILY 533
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
++ L +PV + I +K + + + G K
Sbjct: 534 QNDDKLFIPVTQLNLI--QKFVASEAKAPKINKLGGSE--------------WNKTKQKV 577
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLS 170
I ++ DL + + E + A + + + + I+ ++
Sbjct: 578 STKIEDIADDLIQLYAAREAEKGFAFPPDDAYQKEFEDAFPYTETDDQLRSAAEIKHDME 637
Query: 171 SKSS 174
Sbjct: 638 KIRP 641
>gi|242239055|ref|YP_002987236.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
gi|242131112|gb|ACS85414.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
Length = 1147
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I
Sbjct: 474 ELRPGQPVVHLEHGVGRYVGLTTLEAGGVKAEYLILHYAGED-KLYVPVSSLHLISRYAG 532
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 533 GAED--NAPLHKLGGDA----------WARARQKAAEKVRDVAAELLDVYAQRAAKTGFA 580
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + +AIN + ++ +
Sbjct: 581 FRHNR---EQYQLFCQRFPFETTPDQEQAINAVLSDMCQPLA 619
>gi|319940955|ref|ZP_08015292.1| transcription-repair coupling factor [Sutterella wadsworthensis
3_1_45B]
gi|319805528|gb|EFW02323.1| transcription-repair coupling factor [Sutterella wadsworthensis
3_1_45B]
Length = 1194
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G + E EF K+ L VP+ I
Sbjct: 484 ELKPGDAVVHADHGIGRYQGLVHMETPDGDAEFL-EITYKNDAKLFVPITNLQLISRYAG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ L + K + + +L +
Sbjct: 543 ADPEHAP--LHQLGRGD--------------WEKAKRKAAQEVRDTAAELLNLYAIRRTR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
R + A A + + AIN + +++S
Sbjct: 587 EGIRFKIDPADYQAFREGFAFDETPDQSTAINAVVDDMTSGK 628
>gi|212634585|ref|YP_002311110.1| transcription-repair coupling factor [Shewanella piezotolerans WP3]
gi|212556069|gb|ACJ28523.1| Transcription-repair coupling factor [Shewanella piezotolerans WP3]
Length = 1158
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 52/161 (32%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV ++ + G+ E+ V+ L VPV I +
Sbjct: 485 ELKVGQPIVHLEHGVARYQGLETLDTGGLVAEYLVLE-YSGGDKLYVPVSSLHLISRYSV 543
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ E +K + I +V +L ++ +
Sbjct: 544 GPDEEANL----------------NKLGNETWSKAKRKAIEKIRDVAAELLDVYARRQAR 587
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ ++ + + ++ + AI + ++ +
Sbjct: 588 PGDACKIDQEEYAQFASSFPFEETVDQETAITAVLDDMRTP 628
>gi|323126266|gb|ADX23563.1| Transcription-repair coupling factor [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 1166
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +P+ + +
Sbjct: 487 ELAVGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPIDQIGSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ E+++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVARQVEDIADELLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ S
Sbjct: 594 FSPDDDLQRA---FDDDFTFVETEDQLRSIKEIKADMESMQP 632
>gi|161831377|ref|YP_001597022.1| transcription-repair coupling factor [Coxiella burnetii RSA 331]
gi|161763244|gb|ABX78886.1| transcription-repair coupling factor [Coxiella burnetii RSA 331]
Length = 1157
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ HGVG ++ + + + E+ + + + + VPV I
Sbjct: 489 TELHIGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSSLYLISRYA 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++A + + S++ ++ K AE++ R +
Sbjct: 548 GADASHAP------------LQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAATGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++S + E + + + + AIN + V++SSK
Sbjct: 596 TFS---IPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKR 634
>gi|290579532|ref|YP_003483924.1| putative transcription-repair coupling factor [Streptococcus mutans
NN2025]
gi|254996431|dbj|BAH87032.1| putative transcription-repair coupling factor [Streptococcus mutans
NN2025]
Length = 1162
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ EV+G+ ++ ++ + +P+ + +
Sbjct: 487 ELEKGDYVVHNVHGIGRFLGIETIEVSGVHRDYL-TIQYQNADRISIPIEQIELLSKYVA 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q K++ ++++ +
Sbjct: 546 S------------DGKEPKINKLNDGRFQRVKQKVSKQVEDIADDLLKLYAERSRLKGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A V + + +I ++ ++
Sbjct: 594 FSPD---DKNQEEFDNDFAYVETEDQLRSIKEVKKDMEKDQP 632
>gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C
str. JGS1495]
gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C
str. JGS1495]
Length = 1168
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ G+G IK+ EV G K ++ I L VPV +
Sbjct: 494 KIKSFAELKPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIE-YSKGDKLYVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S++ + + + G Q+ AK+ ++V+
Sbjct: 553 VQKYIGSDSASPK--ISKLGGNE----------WQKAKAKVRKSINDIAGDLVKLYAERS 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S+ ++ + E + + AI I+ ++ +
Sbjct: 601 TVKGYKFSKDTQWQ---KQFEDEFPYEETPDQLSAIEDIKSDMETNK 644
>gi|261822040|ref|YP_003260146.1| transcription-repair coupling factor [Pectobacterium wasabiae
WPP163]
gi|261606053|gb|ACX88539.1| transcription-repair coupling factor [Pectobacterium wasabiae
WPP163]
Length = 1150
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 456 SRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILTYA 515
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G+A K
Sbjct: 516 GED-KLYVPVSSLHLISRYAGGADE--NAPLHKLGGEA----------WSRARQKAAERV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ ++ + + +AIN + ++
Sbjct: 563 RDVAAELLDIYAQRAAKSGFAFKHD---KTQYQLFCESFPFETTPDQAQAINAVLSDMCQ 619
Query: 172 KSS 174
+
Sbjct: 620 PLA 622
>gi|165923977|ref|ZP_02219809.1| transcription-repair coupling factor [Coxiella burnetii RSA 334]
gi|165916585|gb|EDR35189.1| transcription-repair coupling factor [Coxiella burnetii RSA 334]
Length = 1157
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ HGVG ++ + + + E+ + + + + VPV I
Sbjct: 489 TELHIGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSSLYLISRYA 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++A + + S++ ++ K AE++ R +
Sbjct: 548 GADASHAP------------LQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAATGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++S + E + + + + AIN + V++SSK
Sbjct: 596 TFS---IPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKR 634
>gi|22125678|ref|NP_669101.1| transcription-repair coupling factor [Yersinia pestis KIM 10]
gi|45441565|ref|NP_993104.1| transcription-repair coupling factor [Yersinia pestis biovar
Microtus str. 91001]
gi|108807895|ref|YP_651811.1| transcription-repair coupling factor [Yersinia pestis Antiqua]
gi|108812169|ref|YP_647936.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
gi|145599106|ref|YP_001163182.1| transcription-repair coupling factor [Yersinia pestis Pestoides F]
gi|149366410|ref|ZP_01888444.1| transcription-repair coupling factor [Yersinia pestis CA88-4125]
gi|162421681|ref|YP_001607245.1| transcription-repair coupling factor [Yersinia pestis Angola]
gi|165925529|ref|ZP_02221361.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938427|ref|ZP_02226984.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008143|ref|ZP_02229041.1| transcription-repair coupling factor [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166210634|ref|ZP_02236669.1| transcription-repair coupling factor [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401750|ref|ZP_02307241.1| transcription-repair coupling factor [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421853|ref|ZP_02313606.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426319|ref|ZP_02318072.1| transcription-repair coupling factor [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|218928761|ref|YP_002346636.1| transcription-repair coupling factor [Yersinia pestis CO92]
gi|229841610|ref|ZP_04461768.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229843727|ref|ZP_04463870.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. India 195]
gi|229894469|ref|ZP_04509651.1| transcription-repair coupling factor [Yersinia pestis Pestoides A]
gi|229902491|ref|ZP_04517610.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
gi|294504177|ref|YP_003568239.1| transcription-repair coupling factor [Yersinia pestis Z176003]
gi|21958592|gb|AAM85352.1|AE013781_3 transcription-repair coupling factor [Yersinia pestis KIM 10]
gi|45436426|gb|AAS61981.1| transcription-repair coupling factor [Yersinia pestis biovar
Microtus str. 91001]
gi|108775817|gb|ABG18336.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
gi|108779808|gb|ABG13866.1| transcription-repair coupling factor [Yersinia pestis Antiqua]
gi|115347372|emb|CAL20270.1| transcription-repair coupling factor [Yersinia pestis CO92]
gi|145210802|gb|ABP40209.1| transcription-repair coupling factor [Yersinia pestis Pestoides F]
gi|149290784|gb|EDM40859.1| transcription-repair coupling factor [Yersinia pestis CA88-4125]
gi|162354496|gb|ABX88444.1| transcription-repair coupling factor [Yersinia pestis Angola]
gi|165913542|gb|EDR32162.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922638|gb|EDR39789.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992525|gb|EDR44826.1| transcription-repair coupling factor [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166207814|gb|EDR52294.1| transcription-repair coupling factor [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960338|gb|EDR56359.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048855|gb|EDR60263.1| transcription-repair coupling factor [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054674|gb|EDR64478.1| transcription-repair coupling factor [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229680537|gb|EEO76634.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
gi|229689335|gb|EEO81398.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694073|gb|EEO84121.1| transcription-repair coupling factor [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229703488|gb|EEO90505.1| transcription-repair coupling factor [Yersinia pestis Pestoides A]
gi|262362294|gb|ACY59015.1| transcription-repair coupling factor [Yersinia pestis D106004]
gi|294354636|gb|ADE64977.1| transcription-repair coupling factor [Yersinia pestis Z176003]
gi|320014765|gb|ADV98336.1| transcription-repair coupling factor [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 1148
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I + S K
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADDNAP------------LHRLGSDVWSRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + + + + + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAVKSGFKFKHDR---EQYQLFCQSFPFETTPDQEQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|319945976|ref|ZP_08020225.1| transcription-repair coupling factor [Streptococcus australis ATCC
700641]
gi|319747784|gb|EFW00029.1| transcription-repair coupling factor [Streptococcus australis ATCC
700641]
Length = 1170
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G ++ E++G+ + +V ++ + +PV + +
Sbjct: 491 ELEKGDYVVHQVHGIGQYLGLETIEISGVHRD-YVSIQYQNGDRISIPVDQIQMLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + R Q+ K+ ++++ +
Sbjct: 550 S------------DGKPPKINKLNDGRFQKAKQKVRQEVEDIADDLIQLYAERSQLQGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + V + + +I I+ ++ S S
Sbjct: 598 FTPD---DENQEAFDQAFPYVETDDQIRSIQEIKKDMESSSP 636
>gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST398]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|153948693|ref|YP_001400575.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
IP 31758]
gi|152960188|gb|ABS47649.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
IP 31758]
Length = 1148
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I + S K
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADDNAP------------LHRLGSDVWSRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + + + + + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAVKSGFKFKHDR---EQYQLFCQSFPFETTPDQEQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|170023947|ref|YP_001720452.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
YPIII]
gi|169750481|gb|ACA67999.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
YPIII]
Length = 1148
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I + S K
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADDNAP------------LHRLGSDVWSRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + + + + + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAVKSGFKFKHDR---EQYQLFCQSFPFETTPDQEQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|51596765|ref|YP_070956.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
IP 32953]
gi|186895833|ref|YP_001872945.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
PB1/+]
gi|51590047|emb|CAH21681.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
IP 32953]
gi|186698859|gb|ACC89488.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
PB1/+]
Length = 1148
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I + S K
Sbjct: 515 GED-KLYVPVSSLHLISRYSGGADDNAP------------LHRLGSDVWSRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + + + + + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAVKSGFKFKHDR---EQYQLFCQSFPFETTPDQEQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|300214981|gb|ADJ79397.1| Transcription-repair coupling factor [Lactobacillus salivarius CECT
5713]
Length = 908
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G +K EV G ++ +D L +PV + I
Sbjct: 228 TELKKGDYVVHVNHGIGRYIGMKTLEVGGHHHDYM-TILYQDDAKLFIPVSQLDKIQKYV 286
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + ++ + E+V + +++
Sbjct: 287 SSE------------SKTPRVNKLGGSEWAKTKRRVANKIEDIADELVDLYAKREAEKGY 334
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ Y+ + + + I+ ++
Sbjct: 335 AFTPDDSYQ---KEFEDAFPYTETPDQLRSAKEIKQDMEKTKP 374
>gi|29654454|ref|NP_820146.1| transcription-repair coupling factor [Coxiella burnetii RSA 493]
gi|29541721|gb|AAO90660.1| transcription-repair coupling factor [Coxiella burnetii RSA 493]
Length = 1157
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ HGVG ++ + + + E+ + + + + VPV I
Sbjct: 489 TELHIGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSSLYLISRYA 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++A + + S++ ++ K AE++ R +
Sbjct: 548 GADASHAP------------LQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAATGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++S + E + + + + AIN + V++SSK
Sbjct: 596 TFS---IPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKR 634
>gi|206900533|ref|YP_002251220.1| transcription-repair coupling factor [Dictyoglomus thermophilum
H-6-12]
gi|206739636|gb|ACI18694.1| transcription-repair coupling factor [Dictyoglomus thermophilum
H-6-12]
Length = 1070
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 60/168 (35%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ +G+G +K+ ++ ++ EF + + L VP+ +
Sbjct: 420 KPKDLYLLKDGDYVVHVNYGIGIFRGLKKLKIDDVEKEF-IYIEYANNSFLYVPLEEMHL 478
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I S + S + +E K+ E+++ + +
Sbjct: 479 IQRYVSSSPE------------PPQISRLESHQWEETKRKVKESAKEIAEELLKVYAQRE 526
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + V + + +A+ I+ ++ SK
Sbjct: 527 LTEGFAFSPDSPLQ---EELEASFPYVETEDQIKALKEIKRDMESKKP 571
>gi|154707070|ref|YP_001424606.1| transcription-repair coupling factor [Coxiella burnetii Dugway
5J108-111]
gi|154356356|gb|ABS77818.1| transcription-repair coupling factor [Coxiella burnetii Dugway
5J108-111]
Length = 1157
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ HGVG ++ + + + E+ + + + + VPV I
Sbjct: 489 TELHIGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSSLYLISRYA 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++A + + S++ ++ K AE++ R +
Sbjct: 548 GADASHAP------------LQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAATGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++S + E + + + + AIN + V++SSK
Sbjct: 596 TFS---IPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKR 634
>gi|126736472|ref|ZP_01752213.1| transcription-repair coupling factor [Roseobacter sp. CCS2]
gi|126714010|gb|EBA10880.1| transcription-repair coupling factor [Roseobacter sp. CCS2]
Length = 1148
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +++R + G+ +V+ HGVG T ++ G E ++ + + L
Sbjct: 459 TKRKRRAENFLSEANSLSPGDLVVHVDHGVGRYTGMEVVTALGAAHECLLLEYA-EDSKL 517
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + L + G A Q AK+
Sbjct: 518 YLPVENIELLSKY-----GHETGLLDKLGGGA----------WQAKKAKLKERIRQIAER 562
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + ++ + V + + AI + +L S
Sbjct: 563 LIRVAAERELRTAPAL---DPPDGLWDQFLARFPYVETDDQLAAIEDVLTDLGSGKP 616
>gi|322392420|ref|ZP_08065880.1| transcription-repair coupling factor [Streptococcus peroris ATCC
700780]
gi|321144412|gb|EFX39813.1| transcription-repair coupling factor [Streptococcus peroris ATCC
700780]
Length = 1167
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 490 ELQKGDYVVHQIHGIGQYLGIETIEIKGIHRD-YVTIQYQNGDRISIPVEQIQTLSKYVS 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 549 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYAERSQLRGYA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + A V + + +I I+ ++ +
Sbjct: 597 FSKDDEDQVA---FDEAFPYVETEDQLRSIEEIKKDMQTPQP 635
>gi|226354827|ref|YP_002784567.1| CarD family transcriptional regulator [Deinococcus deserti VCD115]
gi|226316817|gb|ACO44813.1| putative Transcriptional regulator, CarD family [Deinococcus
deserti VCD115]
Length = 178
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 65/164 (39%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F+ G+ +V P +G+G + E+ VAG ++ + F VPV G+
Sbjct: 2 KHTAFQIGDRVVLPPYGIGVVCGTCERPVAGQAHAYYQVEFPATASRAYVPVADPACTGI 61
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
R+ + L + WS R + + + G +A + +L R + Q
Sbjct: 62 RRALNDQDLPDLLNQLCHGELELPRQWSARHRVVNDILAGGKPYELAALTCELRRWNMQR 121
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+RQ + A+ + +E++ + + + + ++ + +
Sbjct: 122 GLPDLDRQAFRRAIRLLEQEVSDLRNHLARQIEDFLQEVWNEQP 165
>gi|327471614|gb|EGF17057.1| transcription-repair coupling factor [Streptococcus sanguinis
SK408]
Length = 1167
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E++G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEISGVHRDYL-TIQYQNSDRISIPVDQIDLLSK--- 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
GK + R Q+ K+ ++++ +
Sbjct: 547 ---------FVASDGKTPKVNKLNDGRFQKSKQKVQHQVQDIADDLIKLYAERSQLKCFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +S + V + + +I ++ ++ S
Sbjct: 598 FSAD---DSNQEEFDNDFPYVETEDQLRSIQEVKKDMESSRP 636
>gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri
L37603]
gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri
L37603]
Length = 1169
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HGVG ++ EV ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGEQHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ + +
Sbjct: 548 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKQRE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + ++I I+ ++ +
Sbjct: 596 MSVGYQFGPDT---EEQSTFELDFPYELTPDQSKSIEEIKGDMERERP 640
>gi|261337278|ref|ZP_05965162.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
20093]
gi|270277644|gb|EFA23498.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
20093]
Length = 1205
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 57/182 (31%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDK--- 54
++++ + G+ +V+ HG+G E+K++ K E+ VI + K
Sbjct: 502 PKRRRKQIDLMELKPGDFVVHDQHGIGRFVELKQRSGGSGRNEAKREYLVIEYAPSKRNA 561
Query: 55 --MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +E + + A+
Sbjct: 562 PPDKLFIPTDQLDQVSKYIGAEVPKLNKL--------------GGSDWAATKARAKKHVH 607
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+++ S ++S+ ++ + + + I+ ++ ++ +
Sbjct: 608 EIAENLIKLYAARQSSKGYAFSKDTPWQ---KELEDAFPYQETADQLTTIDDVKSDMEKE 664
Query: 173 SS 174
Sbjct: 665 IP 666
>gi|310815553|ref|YP_003963517.1| transcription-repair coupling factor [Ketogulonicigenium vulgare
Y25]
gi|308754288|gb|ADO42217.1| transcription-repair coupling factor [Ketogulonicigenium vulgare
Y25]
Length = 1152
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T ++KR G+ +V+ HGVG ++ AG E V+ + + L
Sbjct: 461 TRRKKRAENFLTEAASLSPGDLVVHVEHGVGRYLGLEVITAAGAPYECLVLEYA-ESAKL 519
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q A++ +
Sbjct: 520 YLPVVNIELLSRY-----GHEEGLLDKLGGGA----------WQAKKARLKERIRMIADS 564
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + E + + + + +AI + +L + S
Sbjct: 565 LIRVAAERALR---TAPEVDPPSEIWEQFLARFPYQETDDQLQAIGDVIGDLQAGSP 618
>gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
Length = 1173
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G ++ EV G+ ++ ++ L +PV + I
Sbjct: 495 ELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVA 553
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE K + + K+++ +++ + +S+ +
Sbjct: 554 SE------------SKTPKINKLGGSEWAKTKRKVSAKIEDIADDLILLYAKRESEKGYA 601
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + I+ ++ +
Sbjct: 602 FQPDDGYQ---KEFEDAFPYSETDDQLRSTAEIKRDMEKEKP 640
>gi|222111676|ref|YP_002553940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY]
gi|221731120|gb|ACM33940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY]
Length = 1167
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 32/190 (16%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------ 44
T ++++ + + G+ +V+ HG+G + +V +
Sbjct: 460 TTRRRKKQEQASDVEALIKDLSELKVGDPVVHNQHGIGRYRGLIHMDVGNKNPDGSPALQ 519
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ DK L VPV + IG A + S + ++
Sbjct: 520 EFLHLEYADKAVLYVPVSQLQLIGRYTGVSAD------------EAPLHKLGSGQWEKAK 567
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
K A AE++ R ++ ++ + + + + + + AI+
Sbjct: 568 RKAAEQVRDAAAELLNIYARRAAREGHAF---RYSPNDYEQFANDFGFEETADQKAAIHA 624
Query: 165 IEVNLSSKSS 174
+ ++ S
Sbjct: 625 VVQDMISPRP 634
>gi|171778202|ref|ZP_02919431.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171283026|gb|EDT48450.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 1169
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ + + +PV + +
Sbjct: 491 ELSKGDYVVHHVHGIGQFLGIETIEIHGVHRDYL-TIQYQGSSTISLPVEQIESLSKYVS 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ ++++ +
Sbjct: 550 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A V + + +I I+ ++ +
Sbjct: 598 FSPDDDLQ---KEFDDDFAYVETEDQLRSIKEIKHDMEEEKP 636
>gi|71278327|ref|YP_268864.1| transcription-repair coupling factor [Colwellia psychrerythraea
34H]
gi|71144067|gb|AAZ24540.1| transcription-repair coupling factor [Colwellia psychrerythraea
34H]
Length = 1207
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 16/161 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HG+G ++ E G+ EF V+++ + L VPV IG
Sbjct: 539 ELTIGQPVVHIEHGIGRYLGLQTIENGGIVTEFLVLSYAN-EAKLYVPVSSLHLIGRYSG 597
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ ++ WS+ Q+ K+ +A + D++ +
Sbjct: 598 ADSDHAP--------LHKLGNDTWSKAKQKAAEKVR-----DVAAELLDIYAKRASNHGY 644
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+R + + + +AIN + ++ S
Sbjct: 645 SFKRD--KQDYQAFSDSFGFEETFDQKQAINAVVSDMLSPK 683
>gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11]
gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|226365233|ref|YP_002783016.1| transcription-repair coupling factor [Rhodococcus opacus B4]
gi|226243723|dbj|BAH54071.1| transcription-repair coupling factor [Rhodococcus opacus B4]
Length = 1215
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ + G + E+ V ++
Sbjct: 512 LPAKRRNQVDPLALTAGDMVVHDQHGIGRFVEMVERTIGGARREYLV---------IEYA 562
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ + K E+V+
Sbjct: 563 ASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWANTKRKARKAVREIAGELVQ 622
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + A + + I+ ++ ++
Sbjct: 623 LYAARQAAPGHAFGPDTPWQKEME---DAFAFTETHDQLTVISEVKADMEKAVP 673
>gi|111022724|ref|YP_705696.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
gi|110822254|gb|ABG97538.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
Length = 1215
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ + G + E+ V ++
Sbjct: 512 LPAKRRNQVDPLALTAGDMVVHDQHGIGRFVEMVERTIGGARREYLV---------IEYA 562
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ + V G+ + K E+V+
Sbjct: 563 ASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWANTKRKARKAVREIAGELVQ 622
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + A + + I+ ++ ++
Sbjct: 623 LYAARQAAPGHAFGPDTPWQKEME---DAFAFTETHDQLTVISEVKADMEKAVP 673
>gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|121595462|ref|YP_987358.1| transcription-repair coupling factor [Acidovorax sp. JS42]
gi|120607542|gb|ABM43282.1| transcription-repair coupling factor [Acidovorax sp. JS42]
Length = 1164
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 32/190 (16%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------ 44
T ++++ + + G+ +V+ HG+G + +V +
Sbjct: 457 TTRRRKKQEQASDVEALIKDLSELKVGDPVVHNQHGIGRYRGLIHMDVGNKNPDGSPALQ 516
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ DK L VPV + IG A + S + ++
Sbjct: 517 EFLHLEYADKAVLYVPVSQLQLIGRYTGVSAD------------EAPLHKLGSGQWEKAK 564
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
K A AE++ R ++ ++ + + + + + + AI+
Sbjct: 565 RKAAEQVRDAAAELLNIYARRAAREGHAF---RYSPNDYEQFANDFGFEETADQKAAIHA 621
Query: 165 IEVNLSSKSS 174
+ ++ S
Sbjct: 622 VVQDMISPRP 631
>gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21193]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus COL]
gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newman]
gi|81859647|sp|Q5HIH2|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus COL]
gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newman]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|319783816|ref|YP_004143292.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317169704|gb|ADV13242.1| transcription-repair coupling factor [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 1165
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 21/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KR + G+ +V+ HG+G ++ E G + I + L
Sbjct: 480 SKRKKRPSDFIAEASALSAGDIVVHADHGIGRFIGLRTIEAVGAPHDCLEIHYAG-DDRL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + E L + G A Q A++ L +
Sbjct: 539 FLPVENIELLSRY---GSDTAEATLDKLGGGA----------WQSRKARLRKRLLDMAGQ 585
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + AI+ + +L++
Sbjct: 586 LIRIAAERQMRSAPPLVPAEGL---YGEFAARFPYEETDDQQTAIDSVRDDLAAGKP 639
>gi|77165119|ref|YP_343644.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
19707]
gi|254433553|ref|ZP_05047061.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
gi|76883433|gb|ABA58114.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
19707]
gi|207089886|gb|EDZ67157.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
Length = 1158
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDAMRQ---------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M ++++++ R G +V+ HGVG ++ EV ++ EF + +
Sbjct: 465 MQYRRRKERTRDADAVVRDLVELSIGAPVVHEEHGVGRYLGLQTLEVGKVRTEFMALEYA 524
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I + A + S + K
Sbjct: 525 GGD-KLYVPVSSLHLINRYTGATPE------------AAPLHKLGSNHWERAKRKARERV 571
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ + +S R + + +AI + +L+S
Sbjct: 572 RDVAAELLAIYAQRAARKKLPLPT---PDSHYTAFARAFPFEETPDQADAIQAVIADLTS 628
Query: 172 KSS 174
Sbjct: 629 DQP 631
>gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED133]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30]
gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 132]
gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
gi|123098062|sp|Q2G0R8|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|123722412|sp|Q2FJD8|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30]
gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus
aureus subsp. aureus CGS01]
gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21189]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MW2]
gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MSSA476]
gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH70]
gi|81827911|sp|Q6GBY5|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|81847858|sp|Q8NXZ6|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MW2]
gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus
aureus subsp. aureus MSSA476]
gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH70]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus
aureus subsp. aureus TW20]
gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus T0131]
Length = 1168
Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|294677347|ref|YP_003577962.1| transcription-repair coupling factor [Rhodobacter capsulatus SB
1003]
gi|294476167|gb|ADE85555.1| transcription-repair coupling factor [Rhodobacter capsulatus SB
1003]
Length = 1148
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 53/180 (29%), Gaps = 29/180 (16%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HGVG ++ G + ++ + L
Sbjct: 455 PRRKRKAENFLTEAQSLSPGDLVVHVDHGVGRYKGLETVTALGAPHDCVLLEYAGGD-RL 513
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A + I +
Sbjct: 514 YLPVENIELLSRY-----GHEEGLLDKLGGGA--------------WQAKKAKLKERIRQ 554
Query: 118 VVRDLHRTDSQPEKSYSERQLYESA---LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L R ++ + + E+A + + AI + +L++
Sbjct: 555 IADRLMRIAAERLLRPAP--ILEAAHHDWEAFAARFPYTETDDQMAAIEDVVTDLAAGRP 612
>gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
gi|123768536|sp|Q2YVY2|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
Length = 1168
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|329948064|ref|ZP_08294965.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
170 str. F0386]
gi|328523203|gb|EGF50304.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
170 str. F0386]
Length = 1079
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 8/174 (4%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ + +R G+ +V+ HGVG E+ + V G + ++ + ++
Sbjct: 359 VARRARRSVDPLSLHAGDLVVHAQHGVGRFIELSRRTVGGA-----RSSATREYLVIEYA 413
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R L +++ K V G + M + +K E+VR
Sbjct: 414 PSKRGQPGDRLLVPTDALDQVTKYVGGDSPALSKMGGADWAKTKSKARKAVREIAGELVR 473
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S +++ + + + I+ ++ ++
Sbjct: 474 LYAARAATTGHAFSPDTPWQT---ELEEAFPYTETPDQLSTIDEVKADMEKAQP 524
>gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
Length = 1168
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
Length = 1168
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH9]
gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH1]
gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH9]
gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH1]
gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus
04-02981]
gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CGS03]
gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21172]
Length = 1168
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus N315]
gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu3]
gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
gi|81832560|sp|Q7A7B2|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|81855990|sp|Q99WA0|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus N315]
gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu50]
gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu3]
gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
Length = 1168
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei]
Length = 1045
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ EV G+ + ++ +D L +PV + +
Sbjct: 495 SELKPGDYVVHVNHGIGEYVGMETLEVDGVHQD-YITILYRDNGKLFIPVTQLDMVQKYV 553
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E K + Q+ +K+++ +++ + +++
Sbjct: 554 SAE------------SKTPKINKLGGAEWQKTKSKVSAKIEDIADDLIELYAQREAEKGY 601
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + ++ + A + + + I+ ++
Sbjct: 602 AFPKDDQLQA---DFENQFAYPETDDQLRSTAEIKHDMEKVRP 641
>gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
Length = 1168
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|154487169|ref|ZP_02028576.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
L2-32]
gi|154085032|gb|EDN84077.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
L2-32]
Length = 1188
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 18/182 (9%), Positives = 57/182 (31%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKL----EFFVIAFD-----K 52
++++ +TG ++V+ HG+G E++++ + + E+ VI +
Sbjct: 495 PKRRRKAIDLMELKTGNYVVHEQHGIGRFVEMRQRTIGKGENQTTREYLVIEYAPSKRGA 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +E + + AK
Sbjct: 555 PADKLFIPTDQLDQVSKYIGAETPKLNKL--------------GGSDWAATKAKARKHVH 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ ++S+ ++ + + + I+ ++ ++
Sbjct: 601 EIAEDLVKLYSARQRTKGYAFSKDTPWQ---KELEDAFPYQETADQLTTIDEVKSDMEKP 657
Query: 173 SS 174
Sbjct: 658 IP 659
>gi|150016777|ref|YP_001309031.1| CarD family transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149903242|gb|ABR34075.1| transcriptional regulator, CarD family [Clostridium beijerinckii
NCIMB 8052]
Length = 165
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP+ G+G I I+E+E+ G K++ ++I + M L +P+ A +R +
Sbjct: 1 MFNIGDKVVYPSQGIGIIDVIEEKELKGEKIKCYIIHLINNTMKLTLPISAANTFNIRLV 60
Query: 73 SEAHFVERALKLVR----GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
S+ +E +LK + + + + R K+ SG EV+ DL +
Sbjct: 61 SDIKTLENSLKHLDRFMTEAEKFSKINYKERRNISKIKMKSGTFDEFIEVIFDLTQLKRW 120
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ SE+Q+ +V EIA ++ EA L++++++
Sbjct: 121 HSLNSSEKQMLNHIKKIVVEEIAQAKCLTSDEASELLDISMN 162
>gi|319934923|ref|ZP_08009368.1| transcription-repair coupling factor [Coprobacillus sp. 29_1]
gi|319810300|gb|EFW06662.1| transcription-repair coupling factor [Coprobacillus sp. 29_1]
Length = 1141
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 49/170 (28%), Gaps = 18/170 (10%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K G+++V+ HG+G IK E G K ++ K L +PV
Sbjct: 468 KIINDYTELNIGDYVVHDTHGIGQYMGIKTLETKGAKKDYL-YIAYKGNDTLYIPVENFK 526
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ RK + + + K + ++ L
Sbjct: 527 LV--RKYASRDGKSPKIHSLNSSE--------------WQKTKQRVRKKVDDLADKLIEL 570
Query: 126 DSQPEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKSS 174
+ K + AL E + + EA+ I+ ++
Sbjct: 571 YAARMKQAGFAYPKDDALQIQFEECFGYELTPDQQEAVKEIKADMELPRP 620
>gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED98]
gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MR1]
gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED98]
Length = 1168
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|90962332|ref|YP_536248.1| transcription-repair coupling factor [Lactobacillus salivarius
UCC118]
gi|90821526|gb|ABE00165.1| Transcription-repair coupling factor [Lactobacillus salivarius
UCC118]
Length = 1174
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ EV G ++ +D L +PV + I
Sbjct: 494 TELKKGDYVVHVNHGIGRYMGMQTLEVGGHHHDYM-TILYQDDAKLFIPVSQLDKIQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + ++ + E+V + +++
Sbjct: 553 SSE------------SKTPRVNKLGGSEWAKTKRRVANKIEDIADELVDLYAKREAEKGY 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ Y+ + + + I+ ++
Sbjct: 601 AFTPDDSYQ---KEFEDAFPYTETPDQLRSAKEIKQDMEKTKP 640
>gi|315656087|ref|ZP_07908978.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315493089|gb|EFU82689.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 1165
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 59/183 (32%), Gaps = 26/183 (14%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GMK---LEFFVIAFD----- 51
+ ++++ G+++V+ HG+G ++ ++ + G + E+ V+ +
Sbjct: 473 LPARRRKAIDPLTLTQGDYVVHLHHGIGRFVKLAKRTMGRGRETTSKEYVVLEYAPSKRN 532
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VP + V G++ M + +K
Sbjct: 533 GPADQLWVPTDSLDLLSKY--------------VGGESPTLSKMGGADWAKTKSKARKAV 578
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+VR + ++S ++ + V + + I+ ++ ++
Sbjct: 579 KEIARELVRLYAIRQASKGHAFSPDTPWQR---ELEDSFEFVETPDQLTVIDEVKHDMEQ 635
Query: 172 KSS 174
Sbjct: 636 TVP 638
>gi|315656036|ref|ZP_07908934.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
51333]
gi|315490100|gb|EFU79727.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
51333]
Length = 1165
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 59/183 (32%), Gaps = 26/183 (14%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GMK---LEFFVIAFD----- 51
+ ++++ G+++V+ HG+G ++ ++ + G + E+ V+ +
Sbjct: 473 LPARRRKAIDPLTLTQGDYVVHLHHGIGRFVKLAKRTMGRGRETTSKEYVVLEYAPSKRN 532
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VP + V G++ M + +K
Sbjct: 533 GPADQLWVPTDSLDLLSKY--------------VGGESPTLSKMGGADWAKTKSKARKAV 578
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+VR + ++S ++ + V + + I+ ++ ++
Sbjct: 579 KEIARELVRLYAIRQASKGHAFSPDTPWQR---ELEDSFEFVETPDQLTVIDEVKHDMEQ 635
Query: 172 KSS 174
Sbjct: 636 TVP 638
>gi|313832012|gb|EFS69726.1| transcription-repair coupling factor [Propionibacterium acnes
HL007PA1]
Length = 1208
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTFADVKRDMEQVVP 671
>gi|313772670|gb|EFS38636.1| transcription-repair coupling factor [Propionibacterium acnes
HL074PA1]
gi|313810893|gb|EFS48607.1| transcription-repair coupling factor [Propionibacterium acnes
HL083PA1]
gi|313834448|gb|EFS72162.1| transcription-repair coupling factor [Propionibacterium acnes
HL056PA1]
gi|314974450|gb|EFT18545.1| transcription-repair coupling factor [Propionibacterium acnes
HL053PA1]
gi|314977360|gb|EFT21455.1| transcription-repair coupling factor [Propionibacterium acnes
HL045PA1]
gi|314985541|gb|EFT29633.1| transcription-repair coupling factor [Propionibacterium acnes
HL005PA1]
gi|315097614|gb|EFT69590.1| transcription-repair coupling factor [Propionibacterium acnes
HL038PA1]
gi|327331627|gb|EGE73366.1| transcription-repair coupling factor [Propionibacterium acnes
HL096PA2]
gi|327446976|gb|EGE93630.1| transcription-repair coupling factor [Propionibacterium acnes
HL043PA1]
gi|327449987|gb|EGE96641.1| transcription-repair coupling factor [Propionibacterium acnes
HL043PA2]
gi|328761618|gb|EGF75134.1| transcription-repair coupling factor [Propionibacterium acnes
HL099PA1]
Length = 1208
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 516 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 566
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 567 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 626
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + ++ ++
Sbjct: 627 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTFADVKRDMEQVVP 671
>gi|304391135|ref|ZP_07373087.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326018|gb|EFL93264.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 1165
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 59/183 (32%), Gaps = 26/183 (14%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GMK---LEFFVIAFD----- 51
+ ++++ G+++V+ HG+G ++ ++ + G + E+ V+ +
Sbjct: 473 LPARRRKAIDPLTLTQGDYVVHLHHGIGRFVKLAKRTMGRGRETTSKEYVVLEYAPSKRN 532
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VP + V G++ M + +K
Sbjct: 533 GPADQLWVPTDSLDLLSKY--------------VGGESPTLSKMGGADWAKTKSKARKAV 578
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+VR + ++S ++ + V + + I+ ++ ++
Sbjct: 579 KEIARELVRLYAIRQASKGHAFSPDTPWQR---ELEDSFEFVETPDQLTVIDEVKHDMEQ 635
Query: 172 KSS 174
Sbjct: 636 TVP 638
>gi|295130108|ref|YP_003580771.1| transcription-repair coupling factor [Propionibacterium acnes
SK137]
gi|291376182|gb|ADE00037.1| transcription-repair coupling factor [Propionibacterium acnes
SK137]
Length = 1222
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ IV+ HGVG E+ ++ V G E+ V ++ K
Sbjct: 530 NQIQPLELKPGDLIVHEQHGVGRYVEMVQRTVGGATREYLV---------IEYAPSKKGQ 580
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
G R + +++ + V G A M ++ A+ AE+++
Sbjct: 581 PGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQ 640
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + A V + + ++ ++
Sbjct: 641 ATKGHAFGPDTAWQR---ELEGAFAYVETPDQLTTFADVKRDMEQVVP 685
>gi|298345580|ref|YP_003718267.1| putative transcription-repair coupling factor [Mobiluncus curtisii
ATCC 43063]
gi|298235641|gb|ADI66773.1| possible transcription-repair coupling factor [Mobiluncus curtisii
ATCC 43063]
Length = 1165
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 59/183 (32%), Gaps = 26/183 (14%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GMK---LEFFVIAFD----- 51
+ ++++ G+++V+ HG+G ++ ++ + G + E+ V+ +
Sbjct: 473 LPARRRKAIDPLTLTQGDYVVHLHHGIGRFVKLAKRTMGRGRETTSKEYVVLEYAPSKRN 532
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VP + V G++ M + +K
Sbjct: 533 GPADQLWVPTDSLDLLSKY--------------VGGESPTLSKMGGADWAKTKSKARKAV 578
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+VR + ++S ++ + V + + I+ ++ ++
Sbjct: 579 KEIARELVRLYAIRQASKGHAFSPDTPWQR---ELEDSFEFVETPDQLTVIDEVKHDMEQ 635
Query: 172 KSS 174
Sbjct: 636 TVP 638
>gi|254514466|ref|ZP_05126527.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3]
gi|219676709|gb|EED33074.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3]
Length = 1152
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 16/160 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G +V+ HG+G + EV G EF + + L VPV I
Sbjct: 474 DLNELRHGAPVVHAEHGIGRYVGLTHLEVDGAAAEFLTLEYADQ-SKLYVPVSSLQLISR 532
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S+ + S + + K A+++ R +++
Sbjct: 533 YAGSDPEHAP------------LHRLGSEQWDKAQRKAREKANDVAAQLLEVYARREARQ 580
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+++ E R + + AI +E ++
Sbjct: 581 GVQFTD---PEEDYERFAAGFPFEETPDQAAAIEAVERDM 617
>gi|306834606|ref|ZP_07467718.1| transcription-repair coupling factor [Streptococcus bovis ATCC
700338]
gi|304423242|gb|EFM26396.1| transcription-repair coupling factor [Streptococcus bovis ATCC
700338]
Length = 1169
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ + + +PV + +
Sbjct: 491 ELSKGDYVVHHVHGIGKFLGIETIEIHGVHRDYL-TIQYQGSSTISLPVEQIESLSKYVS 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ ++++ +
Sbjct: 550 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A V + + +I I+ ++
Sbjct: 598 FSPDDDLQR---EFDEDFAFVETEDQLRSIKEIKNDMEEDKP 636
>gi|319762021|ref|YP_004125958.1| transcription-repair coupling factor [Alicycliphilus denitrificans
BC]
gi|317116582|gb|ADU99070.1| transcription-repair coupling factor [Alicycliphilus denitrificans
BC]
Length = 1163
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 32/190 (16%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------ 44
T ++++ + + G+ +V+ HG+G + ++ +
Sbjct: 457 TTRRRKKQEQASDVEALIKDLSELKVGDPVVHNQHGIGRYRGLVHMDLGSKNPDGTPALQ 516
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ DK L VPV + IG A + S + ++
Sbjct: 517 EFLHLEYADKAVLYVPVSQLQLIGRYTGVSAD------------EAPLHKLGSGQWEKAK 564
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
K A AE++ R ++ ++ + + V + + + AI+
Sbjct: 565 RKAAEQVRDAAAELLNIYARRAARQGHAF---RYSPQDYEQFVADFGFEETADQKAAIHA 621
Query: 165 IEVNLSSKSS 174
+ ++ S
Sbjct: 622 VVQDMISPRP 631
>gi|332703850|ref|ZP_08423938.1| transcription-repair coupling factor [Desulfovibrio africanus str.
Walvis Bay]
gi|332553999|gb|EGJ51043.1| transcription-repair coupling factor [Desulfovibrio africanus str.
Walvis Bay]
Length = 1158
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ +G+G ++ + + ++ +I FD + L +PV + + +
Sbjct: 485 ELRPGDLLVHRDYGLGRFGGLERLTIGDVANDYLLIHFDGED-KLFLPVDRLRLVQRYQG 543
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ +L +RG R + + E+V +
Sbjct: 544 --PEGLDPSLDSLRG----------TRWKHTTERAKKAIEKIAQELVEMYAYRKVAKGYA 591
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + + AI + ++
Sbjct: 592 YG---PINELYPEFEATFGFEETPDQARAIRDVIEDMERAEP 630
>gi|295396690|ref|ZP_06806836.1| transcription-repair coupling factor [Brevibacterium mcbrellneri
ATCC 49030]
gi|294970436|gb|EFG46365.1| transcription-repair coupling factor [Brevibacterium mcbrellneri
ATCC 49030]
Length = 1202
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 16/171 (9%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFDKDKMCLKVPVGK 63
+ G+++V+ HGVG E+ ++ + E+ V ++ K
Sbjct: 495 QVDPLDLKPGDYVVHEQHGVGRFVELVQRTTRKGKNSLTREYLV---------IEYAPSK 545
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
G R + +++ + V G++ M + + E+VR
Sbjct: 546 RGHPGDRLFVPSDSLDQITRYVGGESPSVNKMGGADWAKTKQRARKAVKEIAGELVRLYS 605
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +S ++ + V + + I+ ++ ++
Sbjct: 606 ARMASKGFQFSPDTPWQR---ELEDAFRYVETADQLTTIDEVKEDMEKPLP 653
>gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus D139]
gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus D139]
Length = 1168
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|85717289|ref|ZP_01048243.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A]
gi|85695878|gb|EAQ33782.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A]
Length = 1174
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G ++ EV G + + + + L +PV +
Sbjct: 497 SEVTSLAAGDLVVHVEHGIGRFVGLQTLEVGGAPHDCLELRYAN-ETKLFLPVENIELLS 555
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G Q AK+ S E++R ++
Sbjct: 556 RY---GSDHASVELDRLGGGG----------WQARKAKLKSRIREIAGELIR----IAAE 598
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +S + + + AI +L S
Sbjct: 599 RHLRDAPKLPVQSGLYDEFCARFPYEETEDQLSAIQASLEDLESGKP 645
>gi|188534138|ref|YP_001907935.1| transcription-repair coupling factor [Erwinia tasmaniensis Et1/99]
gi|188029180|emb|CAO97052.1| Transcription-repair coupling factor (ATP-dependent helicase mfd)
[Erwinia tasmaniensis Et1/99]
Length = 1148
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R G+ +V+ HGVG + E G++ E+ ++A+
Sbjct: 455 SRRRQDSRRTINPDVLIRNLAELHPGQPVVHLEHGVGRYIGLTTLETGGIQAEYLMLAYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I ++ WSR Q+ K+
Sbjct: 515 G-DAKLYVPVSSLHLISRYAGGAEENAP--------LHKLGSDAWSRARQKAAEKVR--- 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+A + D++ + + + +I + +AIN + ++
Sbjct: 563 --DVAAELLDIYAQRAAKTGFAF--KHDKQQYQLFCESFPFETTIDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|319746177|gb|EFV98447.1| transcription-repair coupling factor [Streptococcus agalactiae ATCC
13813]
Length = 1165
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HGVG I+ E+ G+ ++ ++ + +PV + +
Sbjct: 487 ELSVGDYVVHNVHGVGKFLGIETIEIQGIHRDYL-TIQYQNADRISIPVEQIELLTKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK T+ R ++ ++ ++++ +
Sbjct: 546 A------------DGKEPKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYAERSQLQGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + N + A V + + +I I+ ++
Sbjct: 594 FSPDDNMQ---NDFDNDFAYVETEDQLRSIKEIKQDMEGNRP 632
>gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus H19]
gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus H19]
Length = 1168
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G++IV+ HGVG ++ EV ++ + K L VPV +
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKL-QYKGTDQLFVPVDQMDQ 546
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K + ++ AK+ E++ +
Sbjct: 547 VQKYVASE------------DKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKERE 594
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y E ++ + + + ++I+ I+ ++
Sbjct: 595 MAEGYQYGEDTAEQT---TFELDFPYELTPDQAKSIDEIKDDMQKSRP 639
>gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13]
gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13]
Length = 1178
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++V+ HG+G I+ ++ G+ ++ I + L VPV + +
Sbjct: 498 TELNVGDYVVHINHGIGKYLGIETLDINGLHKDYIHIK-YQGSDKLYVPVEQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + ++ K+ S ++++ ++
Sbjct: 557 GSE------------GKEPKVYKLGGTDWKKVKNKVESSVQDIADDLIKLYAEREASVGH 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I+ I++++
Sbjct: 605 AFSPDGEMQR---EFEATFPYQETEDQLRSIHEIKLDMEKTRP 644
>gi|301300308|ref|ZP_07206515.1| transcription-repair coupling factor [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852081|gb|EFK79758.1| transcription-repair coupling factor [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 1174
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ EV G ++ +D L +PV + I
Sbjct: 494 TELKKGDYVVHVNHGIGRYMGMQTLEVGGHHHDYM-TILYQDDAKLFIPVSQLDKIQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + ++ + E+V + +++
Sbjct: 553 SSE------------SKTPRVNKLGGSEWAKTKRRVANKIEDIADELVDLYAKREAEKGY 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ Y+ + + + I+ ++
Sbjct: 601 AFTPDDSYQ---KEFEDAFPYTETPDQLRSAKEIKQDMEKTKP 640
>gi|118578938|ref|YP_900188.1| transcription-repair coupling factor [Pelobacter propionicus DSM
2379]
gi|118501648|gb|ABK98130.1| transcription-repair coupling factor [Pelobacter propionicus DSM
2379]
Length = 1177
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 19/173 (10%)
Query: 4 QQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K+ + + G+H+V+ HG+G ++ V+G+ +F ++ L +PV
Sbjct: 496 RKKQILSSLAELKPGDHMVHVDHGIGLYRGLQHISVSGVGGDFLLLE-YNGGDKLYLPVD 554
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + +L + G + K AI E+ +L
Sbjct: 555 RLALVQRY--VGPEGSSPSLDKLGGVS--------------WEKSKGKARKAIEELAGEL 598
Query: 123 HRTDSQPEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + A + + AIN + ++
Sbjct: 599 LEIYAKRQICEGFSFSPPDEMYREFEASFAWEETPDQLSAINDVLADMQHSRP 651
>gi|313112804|ref|ZP_07798451.1| transcription-repair coupling factor [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624874|gb|EFQ08182.1| transcription-repair coupling factor [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 1157
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 60/178 (33%), Gaps = 21/178 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T ++K++ + + G+++V+ +HG+G I+ EV G ++ + + + L
Sbjct: 472 TKKRKKNRNALSSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGATKDYLKVQYSGSDV-L 530
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + + + KL + + + A E
Sbjct: 531 YVPVTQLDLLSRYTAPGDEEKVKLAKLGGAE---------------WQRTRAKVKKATEE 575
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++L ++ ++ + R + + A I+ ++
Sbjct: 576 MAQELIELYARRRQATGYAFPPDGDWQRDFETRFDYDETDDQLNATAEIKQDMEKGWP 633
>gi|76788164|ref|YP_328735.1| transcription-repair coupling factor [Streptococcus agalactiae
A909]
gi|77405617|ref|ZP_00782706.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
gi|76563221|gb|ABA45805.1| transcription-repair coupling factor [Streptococcus agalactiae
A909]
gi|77175761|gb|EAO78541.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
Length = 1165
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HGVG I+ E+ G+ ++ ++ + +PV + +
Sbjct: 487 ELSVGDYVVHNVHGVGKFLGIETIEIQGIHRDYL-TIQYQNADRISIPVEQIELLTKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK T+ R ++ ++ ++++ +
Sbjct: 546 A------------DGKEPKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYAERSQLQGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + N + A V + + +I I+ ++
Sbjct: 594 FSPDDNMQ---NDFDNDFAYVETEDQLRSIKEIKQDMEGNRP 632
>gi|326792245|ref|YP_004310066.1| CarD family transcriptional regulator [Clostridium lentocellum DSM
5427]
gi|326543009|gb|ADZ84868.1| transcriptional regulator, CarD family [Clostridium lentocellum DSM
5427]
Length = 160
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ + P G G + I+E+++ E+ +I + +P K R +
Sbjct: 1 MFKVGDKVFCPLRGAGIVATIEERKMLDETKEYIIIKLQSSNTTVMIPTDKVEASHFRFV 60
Query: 73 SEAHFVERALKLVRGKAR--VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
S+ L+ + K T+ +R + ++ +G L EV+R+L
Sbjct: 61 SDETMTNEVLEKLADKETEIHASTVLKQRMKVNKERLMAGSLADYGEVIRELTHIQRGKA 120
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ SE + A + E++ + SIS EA L++ L+
Sbjct: 121 LNASENAMLMEARKFLADELSLIKSISMKEATKLLDKVLA 160
>gi|68171223|ref|ZP_00544627.1| Transcription-repair coupling factor [Ehrlichia chaffeensis str.
Sapulpa]
gi|88658189|ref|YP_507071.1| transcription-repair coupling factor [Ehrlichia chaffeensis str.
Arkansas]
gi|67999343|gb|EAM85988.1| Transcription-repair coupling factor [Ehrlichia chaffeensis str.
Sapulpa]
gi|88599646|gb|ABD45115.1| transcription-repair coupling factor [Ehrlichia chaffeensis str.
Arkansas]
Length = 1134
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 57/160 (35%), Gaps = 18/160 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +++ +G+G I ++ +V +F I + + L +PV I
Sbjct: 472 LDIGDIVIHKDYGIGKIVALETTKVFDSYHDFIKIEYYNND-KLFLPVENINLISKY--- 527
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + ++ T W +R + I ++ ++L ++ S
Sbjct: 528 ---GQQNVNVTL---DKLGSTSWQQR--------KTKIKNHIKKIAKELLTIEAARRLST 573
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + E + + + +AI +E +LSS
Sbjct: 574 GKSFFPDENYKHFCNEFSYTETEDQLQAIKDMEHDLSSGK 613
>gi|157375968|ref|YP_001474568.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
gi|157318342|gb|ABV37440.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
Length = 1157
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 61/184 (33%), Gaps = 29/184 (15%)
Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
++ +++RD RQ + G+ IV+ HGV ++ + G+ E+ +
Sbjct: 461 ISQKRRRDKQRQISSDALVKNLAELKVGQPIVHLDHGVARYMGLETLDTGGLIAEYL-ML 519
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
L VPV I + ++ E AK
Sbjct: 520 EYSGGDKLYVPVSSLHLISRYSVGPDEEANL----------------NKLGNETWAKAKR 563
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVN 168
+ I +V +L ++ + + ++ E + ++ + +IN + +
Sbjct: 564 KAVEKIRDVAAELLDVYARRQARPGDACKVIEEEYAQFANSFPFEETVDQETSINAVMTD 623
Query: 169 LSSK 172
+ S
Sbjct: 624 MCSP 627
>gi|27365411|ref|NP_760939.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
gi|37680549|ref|NP_935158.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
gi|27361558|gb|AAO10466.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
gi|37199297|dbj|BAC95129.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
Length = 1153
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E G+K E +V+ +++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLETLEAGGIKAE-YVMLEYQNEAKLYVPVASLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ W+R ++ K + +V +L ++ E
Sbjct: 538 GAEESAP--------IHKLGSDAWTRARRKAAEK--------VRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AIN + ++ +
Sbjct: 582 PGYKFVLDRGQYATFKSGFPFEETDDQSMAINAVLSDMCQAKA 624
>gi|307942228|ref|ZP_07657579.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4]
gi|307774514|gb|EFO33724.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4]
Length = 1162
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 22/177 (12%)
Query: 3 FQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K G G+ +V+ HG+G T +K E G + + + L
Sbjct: 477 SRRKAKGADVITEASGLSEGDLVVHVEHGIGRFTGLKTIEAVGAPHDCMELQYAD-GAKL 535
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + + L + G A Q AK+ L
Sbjct: 536 YLPVENIELLSRY---GSEDSDSQLDKLGGGA----------WQARKAKLKKRILEIADG 582
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + E + + + AI+ + +L+S
Sbjct: 583 LIKTAAARALKTAPVV---ETPEGVYDEFASRFPYDETDDQLTAIDSVFDDLASGRP 636
>gi|227824817|ref|ZP_03989649.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
gi|226905316|gb|EEH91234.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
Length = 1093
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 23/179 (12%)
Query: 3 FQQKRD-------AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+K+ + G+++V+ G+G ++ + G+ ++ + + +
Sbjct: 411 RQKKKIRGAGPALTYFTDIKAGDYVVHDTQGIGRYLGVETIVIDGIHRDYLKLQYAQGD- 469
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + + SE G M Q+ K I
Sbjct: 470 KLHVPVEQVGLLHKYIGSE------------GTPPRLSRMGRSDWQKAKKKAQKAITILA 517
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+E++R + P +++ ++ + + +AI I+ ++
Sbjct: 518 SELLRLYAQRKITPGHAFAPDTPWQ---KEFEDRFPFEETPDQLKAIQEIKADMEKPVP 573
>gi|320155796|ref|YP_004188175.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
gi|319931108|gb|ADV85972.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
Length = 1153
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E G+K E +V+ +++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLETLEAGGIKAE-YVMLEYQNEAKLYVPVASLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ W+R ++ K + +V +L ++ E
Sbjct: 538 GAEESAP--------IHKLGSDAWTRARRKAAEK--------VRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AIN + ++ +
Sbjct: 582 PGYKFVLDRGQYATFKSGFPFEETDDQSMAINAVLSDMCQAKA 624
>gi|332141064|ref|YP_004426802.1| transcription-repair coupling factor [Alteromonas macleodii str.
'Deep ecotype']
gi|327551086|gb|AEA97804.1| transcription-repair coupling factor [Alteromonas macleodii str.
'Deep ecotype']
Length = 1165
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG ++ + G+ E+ + L VPV I
Sbjct: 494 ELSIGQPVVHLDHGVGRYLGLQTLDAGGVTTEYL-CIEYAKQSKLYVPVASLHLISRYTG 552
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+A + + W++ Q+ K+ +A + D++ +
Sbjct: 553 GDADSAP--------VSALGSDAWTKAKQKAAEKVR-----DVAAELLDVYARRAAKPGF 599
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AI + ++ S S+
Sbjct: 600 EYKINWDD--YQAFADSFPFEETPDQAQAIAAVMHDMGSPSA 639
>gi|77407708|ref|ZP_00784463.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
gi|77173707|gb|EAO76821.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
Length = 1165
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HGVG I+ E+ G+ ++ ++ + +PV + +
Sbjct: 487 ELSVGDYVVHNVHGVGKFLGIETIEIQGIHRDYL-TIQYQNADRISIPVEQIELLTKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK T+ R ++ ++ ++++ +
Sbjct: 546 A------------DGKEPKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYAERSQLQGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + N + A V + + +I I+ ++
Sbjct: 594 FSPDDNMQ---NDFDNDFAYVETEDQLRSIKEIKQDMEGNRP 632
>gi|86138342|ref|ZP_01056916.1| transcription-repair coupling factor [Roseobacter sp. MED193]
gi|85824867|gb|EAQ45068.1| transcription-repair coupling factor [Roseobacter sp. MED193]
Length = 1153
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 54/177 (30%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E ++ + ++ L
Sbjct: 459 PKKRRKAENFLTETQSLTPGDLVVHVDHGIGRYQGMEVVRAAGAAHECLLLEYA-EESKL 517
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+ +
Sbjct: 518 YLPVENIELLSKY-----GHDEGLLDRLGGGA----------WQAKKAKLKERIREMADK 562
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + A + + AI + +L+S
Sbjct: 563 LIRIAAERALRRAPAM---DPPPHAWEEFSARFPYQETDDQLRAIQEVMADLTSGQP 616
>gi|22536193|ref|NP_687044.1| transcription-repair coupling factor [Streptococcus agalactiae
2603V/R]
gi|25010083|ref|NP_734478.1| transcription-repair coupling factor [Streptococcus agalactiae
NEM316]
gi|77414464|ref|ZP_00790614.1| reticulocyte binding protein [Streptococcus agalactiae 515]
gi|22533010|gb|AAM98916.1|AE014191_8 transcription-repair coupling factor [Streptococcus agalactiae
2603V/R]
gi|23094434|emb|CAD45653.1| Unknown [Streptococcus agalactiae NEM316]
gi|77159474|gb|EAO70635.1| reticulocyte binding protein [Streptococcus agalactiae 515]
Length = 1165
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HGVG I+ E+ G+ ++ ++ + +PV + +
Sbjct: 487 ELSVGDYVVHNVHGVGKFLGIETIEIQGIHRDYL-TIQYQNADRISIPVEQIELLTKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK T+ R ++ ++ ++++ +
Sbjct: 546 A------------DGKEPKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYAERSQLQGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + N + A V + + +I I+ ++
Sbjct: 594 FSPDDNMQ---NDFDNDFAYVETEDQLRSIKEIKQDMEGNRP 632
>gi|317052468|ref|YP_004113584.1| transcription-repair coupling factor [Desulfurispirillum indicum
S5]
gi|316947552|gb|ADU67028.1| transcription-repair coupling factor [Desulfurispirillum indicum
S5]
Length = 1048
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
R G+H+V+ +GVG I+ AG + +F I + + + L VP K +
Sbjct: 390 TDLAMLRPGDHVVHVEYGVGIFRGIENLSAAGTRGDFLKIEYARGDI-LYVPNDKFHLVQ 448
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
S+ G ++ R K S ++ ++ + L +TD+
Sbjct: 449 KYIGSDT-----------GDPKLDRMGSKS-----WEKRKSRARKSVEDIAQSLMQTDAL 492
Query: 129 PEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L +S+ + V + + + +AI ++ S
Sbjct: 493 RRRHKEHTYLRDSSLYDEFVAQFPYEETEDQLQAIKETIEDMCSPHP 539
>gi|306832490|ref|ZP_07465642.1| transcription-repair coupling factor [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|304425390|gb|EFM28510.1| transcription-repair coupling factor [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 1170
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ + + +PV + +
Sbjct: 492 ELSKGDYVVHHVHGIGKFLGIETIEIHGVHRDYL-TIQYQGSSTISLPVEQIESLSKYVS 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ ++++ +
Sbjct: 551 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A V + + +I I+ ++
Sbjct: 599 FSPDDDLQR---EFDEDFAFVETEDQLRSIKEIKHDMEEDKP 637
>gi|288904230|ref|YP_003429451.1| transcription repair coupling factor [Streptococcus gallolyticus
UCN34]
gi|325977207|ref|YP_004286923.1| transcription-repair coupling factor [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|288730955|emb|CBI12499.1| Transcription repair coupling factor [Streptococcus gallolyticus
UCN34]
gi|325177135|emb|CBZ47179.1| transcription-repair coupling factor [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 1166
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ + + +PV + +
Sbjct: 488 ELSKGDYVVHHVHGIGKFLGIETIEIHGVHRDYL-TIQYQGSSTISLPVEQIESLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ ++++ +
Sbjct: 547 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A V + + +I I+ ++
Sbjct: 595 FSPDDDLQR---EFDEDFAFVETEDQLRSIKEIKHDMEEDKP 633
>gi|254281663|ref|ZP_04956631.1| transcription-repair coupling factor [gamma proteobacterium
NOR51-B]
gi|219677866|gb|EED34215.1| transcription-repair coupling factor [gamma proteobacterium
NOR51-B]
Length = 1155
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 18/164 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G +V+ HGVG ++ E+ EF V+ + L VPVG I
Sbjct: 476 DLTELSPGVPVVHLEHGVGRYIGLQTLEIENDPAEFLVLEYA-SDDKLYVPVGSLHLISR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S+ L + E K ++V L ++
Sbjct: 535 YTGSDPDSAP--LHRLGS--------------EQWEKARRKASKRASDVAAQLLEVYARR 578
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E +E A +R + + + AI + ++ +
Sbjct: 579 EARQGFAHAWEPDAWDRFCNQFPFEETPDQAAAIEAVRNDMCAP 622
>gi|125622895|ref|YP_001031378.1| transcription-repair coupling factor [Lactococcus lactis subsp.
cremoris MG1363]
gi|124491703|emb|CAL96622.1| Transcription-repair coupling factor (TRCF) [Lactococcus lactis
subsp. cremoris MG1363]
gi|300069633|gb|ADJ59033.1| transcription-repair coupling factor [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 1180
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HG+G ++ EV GM ++ ++ + VPV +
Sbjct: 502 ELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYL-TIQYQNGDTISVPVDHLDLLSKYTA 560
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E GK+ + R ++ + ++ ++++ ++ +
Sbjct: 561 GE------------GKSPKINKLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKKGFA 608
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +++ + V + + +IN I+ ++ +
Sbjct: 609 FSPD---DASQEEFDSGFSYVETEDQIRSINEIKHDMELERP 647
>gi|56696942|ref|YP_167304.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3]
gi|56678679|gb|AAV95345.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3]
Length = 1142
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G+ +V+ HG+G ++ AG E + + ++ L
Sbjct: 452 PKKRRKAENFLTETQSLTPGDLVVHVDHGIGRYRGLEVITAAGAAHECIALDYA-EEARL 510
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+
Sbjct: 511 YLPVENIELLSKY-----GHEEGLLDRLGGGA----------WQAKKAKLKERIREMADR 555
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI + +L S
Sbjct: 556 LIRVAAERALRKAPVM---DPPPHAWEDFSARFPYQETDDQLRAIGDVMDDLHSGMP 609
>gi|256820721|ref|YP_003142000.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
7271]
gi|256582304|gb|ACU93439.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
7271]
Length = 1109
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ EV G + E + D+ L V
Sbjct: 415 AKKQAITLKELMQLEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKL-IYGDRDVLFVS 473
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S + K + +++
Sbjct: 474 IHALHKITKYNG------------KDGKPPKIYKLGSGAWKALKQKTKTRVKEIAFNLIQ 521
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +YS + N + ++ + +A ++ ++ S
Sbjct: 522 LYAKRKESKGYAYSHDSYMQ---NELEASFLYEDTPDQSKATAEVKADMESPKP 572
>gi|90413103|ref|ZP_01221100.1| putative transcription-repair coupling factor [Photobacterium
profundum 3TCK]
gi|90325946|gb|EAS42392.1| putative transcription-repair coupling factor [Photobacterium
profundum 3TCK]
Length = 1151
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E G+ E +V+ L VPV I
Sbjct: 480 ELQIGQPVVHIDHGIGRYQGLQTLEAGGITTE-YVMLEYHAGAKLYVPVASLHLISRYSG 538
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + +V +L ++ E
Sbjct: 539 GADESAP--LHKLGGEA--------------WVKARKKAAEKVRDVAAELLDVYAKRELK 582
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 583 PGFKFTLDRESYADFCSGFPFEETHDQALAINSVLSDMCQPRA 625
>gi|322417709|ref|YP_004196932.1| transcription-repair coupling factor [Geobacter sp. M18]
gi|320124096|gb|ADW11656.1| transcription-repair coupling factor [Geobacter sp. M18]
Length = 1157
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 19/174 (10%)
Query: 3 FQQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
++K+ + G+H+V+ GV ++ + G++ +F ++ + L +PV
Sbjct: 484 ARKKQLLTSLAELKPGDHMVHIDFGVALYRGLQHLSLTGLEGDFLLLEYAGGD-KLYLPV 542
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + A +E L + G K + I E+ +
Sbjct: 543 DRINLVQRY--VGAEGIEPKLDRLGGAG--------------WEKAKAKARAEIQEMAAE 586
Query: 122 LHRTDSQPEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + + E R + A + + AI+ + ++ S+
Sbjct: 587 LLKIHAAREVQEGYRFSPADDMYRAFEASFAFEETPDQATAIDQVISDMESQRP 640
>gi|296393668|ref|YP_003658552.1| transcription-repair coupling factor [Segniliparus rotundus DSM
44985]
gi|296180815|gb|ADG97721.1| transcription-repair coupling factor [Segniliparus rotundus DSM
44985]
Length = 1214
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+++ + G+++V+ HG+G E+ E+ V G + E+ V+ + K P
Sbjct: 503 TRRRDQVDPLALKAGDYVVHDQHGIGRFVELVERTVGGARREYVVVEYASSKRGH--PPD 560
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
R +++ + V G++ M + +E+VR
Sbjct: 561 -------RLYVPMDALDQLSRYVGGESPALSKMGGSDWATTKRQARKAVREVASELVRLY 613
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S ++ ++S + A + + I ++ ++ +
Sbjct: 614 AARQSAKGHAFGPDSPWQS---ELEGAFAHAPTPDQLTTIGEVKADMEREVP 662
>gi|258654637|ref|YP_003203793.1| transcription-repair coupling factor [Nakamurella multipartita DSM
44233]
gi|258557862|gb|ACV80804.1| transcription-repair coupling factor [Nakamurella multipartita DSM
44233]
Length = 1192
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 56/166 (33%), Gaps = 12/166 (7%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+++V+ HG+G ++ ++ G E+ V ++ K G
Sbjct: 500 VDPLALKPGDYVVHSQHGIGKYVDMVQRTSGGATREYLV---------VEYAPSKRNQPG 550
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R +++ + V G+ + + + A++V+ S
Sbjct: 551 DRLFVPTDALDQLSRYVGGEVPTLNKLGGADWAKTKGRARKAVRQIAAKLVQVYAARASA 610
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P +++ ++ + + + AI+ ++ ++
Sbjct: 611 PGHAFAPDTPWQR---ELEDAFPYTETHDQLAAIDEVKADMERAVP 653
>gi|219666201|ref|YP_002456636.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DCB-2]
gi|219536461|gb|ACL18200.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DCB-2]
Length = 1197
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 68/178 (38%), Gaps = 22/178 (12%)
Query: 4 QQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++K+ + + G+ +V+ HG+G I+ V G++ ++F + +
Sbjct: 506 KRKKAPEKTGQRLQFADLKPGDFVVHVHHGIGQFMGIERIAVGGVEKDYFSVKYAGQD-K 564
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VP+ + + S+A + + KL + ++ AK S
Sbjct: 565 LYVPLDQLNFLQKYLGSDAETLPKLYKLGGSE-----------WKKVKAKAKSAIKEMAF 613
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++V+ + ++ ++S +++ + + + + I ++ ++ +
Sbjct: 614 DLVKLYAQREATKGYAFSPDNVWQ---QEFEEKFPYQETPDQMQCIVEVKQDMMRQRP 668
>gi|320335300|ref|YP_004172011.1| CarD family transcriptional regulator [Deinococcus maricopensis DSM
21211]
gi|319756589|gb|ADV68346.1| transcriptional regulator, CarD family [Deinococcus maricopensis
DSM 21211]
Length = 168
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 1/147 (0%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ R G+ +VYP HG G + + E+ V G+K ++ + + VPV +A D+G
Sbjct: 2 SEELQLREGDSVVYPNHGAGVVRALTERTVLGVKQAYYEVHLFGKDAQVLVPVARARDLG 61
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+R+ + V L + + R + + + DL+ + +V L R D
Sbjct: 62 LRRATRREDVPNLLAEL-STDIPLPESFQARYRAEQELLQAADLVTLTRLVGTLVRRDVT 120
Query: 129 PEKSYSERQLYESALNRMVREIAAVNS 155
SE + A + E+
Sbjct: 121 RGLPSSEMDVLMHARKTLEAELEVALG 147
>gi|304397240|ref|ZP_07379119.1| transcription-repair coupling factor [Pantoea sp. aB]
gi|304355389|gb|EFM19757.1| transcription-repair coupling factor [Pantoea sp. aB]
Length = 1147
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G++ E+ +
Sbjct: 455 SRRRQDTRRTINPDILIRNLAELSPGQPVVHLEHGVGRYIGLTTLEAGGIQAEYL-MLSY 513
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I + S K
Sbjct: 514 ANDAKLYVPVSSLHLISRYAGGADDNAP------------LHKLGSDAWSRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAAKSGFAFKHNR---EQYQLFCESFPFETTPDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|330826160|ref|YP_004389463.1| transcription-repair coupling factor [Alicycliphilus denitrificans
K601]
gi|329311532|gb|AEB85947.1| transcription-repair coupling factor [Alicycliphilus denitrificans
K601]
Length = 1163
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 32/190 (16%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------ 44
T ++++ + + G+ +V+ HG+G + ++ +
Sbjct: 457 TTRRRKKQEQASDVEALIKDLSELKVGDPVVHNQHGIGRYRGLVHMDLGSKNPDGTPALQ 516
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ DK L VPV + IG A + S + ++
Sbjct: 517 EFLHLEYADKAVLYVPVSQLQLIGRYTGVSAD------------EAPLHKLGSGQWEKAK 564
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
K A AE++ R ++ ++ + + V + + + AI+
Sbjct: 565 RKAAEQVRDAAAELLNIYARRAARQGHAF---RYSPQDYEQFVADFGFEETADQNAAIHA 621
Query: 165 IEVNLSSKSS 174
+ ++ S
Sbjct: 622 VVQDMISPRP 631
>gi|311113149|ref|YP_003984371.1| transcription-repair coupling factor [Rothia dentocariosa ATCC
17931]
gi|310944643|gb|ADP40937.1| transcription-repair coupling factor [Rothia dentocariosa ATCC
17931]
Length = 1229
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 60/173 (34%), Gaps = 4/173 (2%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+++V+ HG+G E+ + VAG+ + K+ + ++
Sbjct: 524 PRKRRNAVDPLALTPGDYVVHERHGIGKFIEMASRPVAGVSSKHG-ETPLKEYLVIEYAP 582
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K R + ++ V + M + ++ A++V+
Sbjct: 583 SKRGGAPDRLFVPSDQLDLISHYVGSETPTLSKMGGSDWAKTKSRARKAVKEIAADLVKL 642
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++SE ++ + + + AI+ ++ ++ +
Sbjct: 643 YSARQASRGHAFSEDTPWQR---ELEESFPYNETPDQLTAIHEVKADMEKEIP 692
>gi|188589570|ref|YP_001920088.1| transcriptional regulator, CarD family [Clostridium botulinum E3
str. Alaska E43]
gi|251778617|ref|ZP_04821537.1| transcriptional regulator, CarD family [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|188499851|gb|ACD52987.1| transcriptional regulator, CarD family [Clostridium botulinum E3
str. Alaska E43]
gi|243082932|gb|EES48822.1| transcriptional regulator, CarD family [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 163
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ IVYP+ GVG I I E G ++ I + M L +P+ + D+ +R +
Sbjct: 1 MFNIGDKIVYPSQGVGIIELIGEMLFKGEVQNYYKIHIFNNNMTLTLPINRVDDLNIRLV 60
Query: 73 SEAHFVERALKLVRG----KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
S++ ++ L+ V+ + ++ + +RA + KI SG L EV+ +L + Q
Sbjct: 61 SDSETLDSVLENVKDFTTNIEELNKSDFKQRAAINNQKIKSGTLTDYLEVIYNLTKVREQ 120
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ SE+ + +V EI+ ++S +A +L+ + ++
Sbjct: 121 HSLNSSEKDTLRKTVKTLVEEISQSKNLSNDDASSLLNLAIN 162
>gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp.
sakei 23K]
gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei
subsp. sakei 23K]
Length = 1173
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ EV G+ + ++ +D L +PV + +
Sbjct: 495 SELKPGDYVVHVNHGIGEYVGMETLEVDGVHQD-YITILYRDNGKLFIPVTQLDMVQKYV 553
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E K + Q+ +K+++ +++ + +++
Sbjct: 554 SAE------------SKTPKINKLGGAEWQKTKSKVSAKIEDIADDLIELYAQREAEKGY 601
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + ++ + A + + + I+ ++
Sbjct: 602 AFPKDDQLQA---DFENQFAYPETDDQLRSTAEIKHDMEKVRP 641
>gi|73667378|ref|YP_303394.1| transcription-repair coupling factor [Ehrlichia canis str. Jake]
gi|72394519|gb|AAZ68796.1| transcription-repair coupling factor [Ehrlichia canis str. Jake]
Length = 1128
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 18/160 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +++ +G+G I E++ +V +F I + + L +PV I
Sbjct: 469 LDIGDIVIHKDYGIGKIVELETTKVLDSYHDFIKIEYYNND-KLFLPVENINLISKYGQQ 527
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ T W +R + I ++ R+L ++ + S
Sbjct: 528 NPNVTL---------DKLGSTSWQQR--------KTKIKNHIKKIARELLAIEAARKLST 570
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + E + + + +AI +E +LSS
Sbjct: 571 GQIFCKDENYQHFCNEFSYTETEDQLQAIKDMEHDLSSGK 610
>gi|225019308|ref|ZP_03708500.1| hypothetical protein CLOSTMETH_03261 [Clostridium methylpentosum
DSM 5476]
gi|224947939|gb|EEG29148.1| hypothetical protein CLOSTMETH_03261 [Clostridium methylpentosum
DSM 5476]
Length = 176
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 70/173 (40%), Gaps = 5/173 (2%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
+++ ++ F+ + ++Y GV I +I+ ++ + +L ++++ + +
Sbjct: 2 RKEQVKAVFQINDTVMYGNTGVCRIVDIRPEKFSDRELVYYILQPVYSESETIYCPVDSD 61
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-- 123
I +RKL V ++L+ R ++Y + +GD + ++++ LH
Sbjct: 62 KIKIRKLLSLQEVHELIELMPDAQTEWIENDQLRKEKYTEILRNGDHRELVKLIKTLHIH 121
Query: 124 ---RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + ++ ++ A + E A V I E + I L+
Sbjct: 122 REEKNREGKKFHLADEKISNEAEKILHGEFAHVLHIQPDEVVPFIMGQLNHPE 174
>gi|54309559|ref|YP_130579.1| putative transcription-repair coupling factor [Photobacterium
profundum SS9]
gi|46913995|emb|CAG20777.1| putative transcription-repair coupling factor [Photobacterium
profundum SS9]
Length = 1151
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E G+ E +V+ L VPV I
Sbjct: 480 ELQVGQPVVHIDHGIGRYQGLQTLEAGGITTE-YVMLEYDAGAKLYVPVASLHLISRYSG 538
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + +V +L ++ E
Sbjct: 539 GADDSAP--LHKLGGEA--------------WVKARKKAAEKVRDVAAELLDVYAKRELK 582
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 583 PGFKFTLDRESYADFCSGFPFEETHDQALAINSVLSDMCKPRA 625
>gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU121]
Length = 1169
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ Q G+++V+ HGVG ++ EV ++ + K L VPV +
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGEQHRDYIKL-QYKGTDQLFVPVDQMDQ 547
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE K+ + ++ AK+ E++ + +
Sbjct: 548 VQKYVASE------------DKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKQRE 595
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + ++I+ I+ ++ +
Sbjct: 596 MSVGYQFGPDT---EEQSTFELDFPYELTPDQSKSIDEIKGDMERERP 640
>gi|325277315|ref|ZP_08142941.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
gi|324097550|gb|EGB95770.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
Length = 1149
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFL-TLEYAENAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + AI + ++ +
Sbjct: 584 AFAD---PSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKP 623
>gi|322388485|ref|ZP_08062088.1| transcription-repair coupling factor [Streptococcus infantis ATCC
700779]
gi|321140798|gb|EFX36300.1| transcription-repair coupling factor [Streptococcus infantis ATCC
700779]
Length = 1167
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 490 ELQKGDYVVHQIHGIGQYLGIETIELKGIHRD-YVSIQYQNGDRISIPVEQIQTLSKYVS 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + R ++ K+ + ++++ +
Sbjct: 549 S------------DGKAPKLNKLNDGRFKKAKQKVKNQVEDIADDLIKLYAERSQLEGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + A V + + +I I+ ++ +
Sbjct: 597 FSKDDEDQVA---FDEAFPYVETEDQLRSIEEIKKDMQASQP 635
>gi|308235054|ref|ZP_07665791.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
14018]
gi|311114598|ref|YP_003985819.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
14019]
gi|310946092|gb|ADP38796.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
14019]
Length = 1200
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/182 (8%), Positives = 53/182 (29%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFD-----K 52
++++ + G+ +V+ HG+G ++++ + E+ I +
Sbjct: 512 PRRRRKSIDLLDLKPGDFVVHDQHGIGKFIGMRQRNIKTSSGEATREYLEIEYAPSKRNA 571
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +P + + +E + + AK
Sbjct: 572 PADKLFIPTDQLDLVSKYIGAEIPKLNKL--------------GGSDWAATKAKARKHVQ 617
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ S ++S ++ + + + I+ ++ ++
Sbjct: 618 EVAEDLIKLYSARASTKGFAFSSDTPWQ---KELEDAFPYQETPDQLTTIDEVKQDMQKP 674
Query: 173 SS 174
Sbjct: 675 IP 676
>gi|253998954|ref|YP_003051017.1| transcription-repair coupling factor [Methylovorus sp. SIP3-4]
gi|253985633|gb|ACT50490.1| transcription-repair coupling factor [Methylovorus sp. SIP3-4]
Length = 1138
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 41/166 (24%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R + +V+ HGVG + + + EF ++ + L VPV + I
Sbjct: 470 DLSELREQDPVVHEQHGVGRYKGLVNLDFGEGETEFLLLEYAG-DDKLYVPVSQLFLISR 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
L + K L I + +L +Q
Sbjct: 529 YSGGPPESAP--LHRLGSGQ--------------WEKAKKKALKQIRDTAAELLNLYAQR 572
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + AI + ++ S
Sbjct: 573 AARKGHAFTLTLQDYEAFAEGFPFEETPDQLSAIEAVISDMQSGRP 618
>gi|116510854|ref|YP_808070.1| transcription-repair coupling factor [Lactococcus lactis subsp.
cremoris SK11]
gi|116106508|gb|ABJ71648.1| transcription-repair coupling factor [Lactococcus lactis subsp.
cremoris SK11]
Length = 1162
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HG+G ++ EV GM ++ ++ + VPV +
Sbjct: 484 ELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYL-TIQYQNGDTISVPVDHLDLLSKYTA 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E GK+ + R ++ + ++ ++++ ++ +
Sbjct: 543 GE------------GKSPKINKLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKKGFA 590
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +++ + V + + +IN I+ ++ +
Sbjct: 591 FSPD---DASQEEFDSGFSYVETEDQIRSINEIKHDMELERP 629
>gi|212212451|ref|YP_002303387.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212]
gi|212010861|gb|ACJ18242.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212]
Length = 1157
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ HGVG ++ + + + E+ + + + + VPV I
Sbjct: 489 TELHIGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADND-KIYVPVSSLYLISRYA 547
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++A + + S++ ++ K AE++ R +
Sbjct: 548 GADASHAP------------LQKLGSKQWEKIKEKTQKHIRDVAAELLDIYSRRQAATGF 595
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++S + E + + + + AIN + V++SSK
Sbjct: 596 TFS---IPEKGYSLFRQAFPFEETPDQSAAINDVIVDMSSKR 634
>gi|75675705|ref|YP_318126.1| transcription-repair coupling factor [Nitrobacter winogradskyi
Nb-255]
gi|74420575|gb|ABA04774.1| transcription-repair coupling factor [Nitrobacter winogradskyi
Nb-255]
Length = 1174
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G ++ EV G + + + + L +PV +
Sbjct: 497 SEVTSLAAGDLVVHVEHGIGRFVGLQTLEVGGAPHDCLELRYAN-ETKLFLPVENIELLS 555
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G Q AK+ S E++R ++
Sbjct: 556 RY---GSDQANVELDRLGGGG----------WQARKAKLKSRIREIAGELIR----IAAE 598
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +S + + + AI +L S
Sbjct: 599 RHLREAPKLPVQSGLYDEFCARFPYEETEDQLGAIQASLEDLESGKP 645
>gi|315223854|ref|ZP_07865702.1| transcription-repair coupling factor [Capnocytophaga ochracea
F0287]
gi|314946184|gb|EFS98185.1| transcription-repair coupling factor [Capnocytophaga ochracea
F0287]
Length = 1109
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ EV G + E + D+ L V
Sbjct: 415 AKKQAITLKELMQLEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKL-IYGDRDVLFVS 473
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S + K + +++
Sbjct: 474 IHALHKITKYNG------------KDGKPPKIYKLGSGAWKALKQKTKTRVKEIAFNLIQ 521
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +YS + N + ++ + +A ++ ++ S
Sbjct: 522 LYAKRKESKGYAYSHDSYMQ---NELEASFLYEDTPDQSKATAEVKADMESPKP 572
>gi|313900859|ref|ZP_07834349.1| transcription-repair coupling factor [Clostridium sp. HGF2]
gi|312954279|gb|EFR35957.1| transcription-repair coupling factor [Clostridium sp. HGF2]
Length = 1151
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q G+++V+ HG+G I +++ G+ +F I K L VP+ + I RK
Sbjct: 477 QELNVGDYVVHNQHGIGKYLGIVNKKIDGVHKDFLHI-AYKGDDVLLVPLEQFKLI--RK 533
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
L + ++ K+++ +V+ D
Sbjct: 534 FVSKEGASPKLNKLGSGE----------WEKTKKKVSAKIAELADRLVKLYASRDENIGH 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + + + A+ I+ ++ S
Sbjct: 584 AFAKDTPLQ---KQFEEDFEYELTPDQARAVQEIKQDMESAKP 623
>gi|269118963|ref|YP_003307140.1| CarD family transcriptional regulator [Sebaldella termitidis ATCC
33386]
gi|268612841|gb|ACZ07209.1| transcriptional regulator, CarD family [Sebaldella termitidis ATCC
33386]
Length = 172
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 7/165 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAI-DIGMR 70
++ + ++Y HGV I I E++ G + + +DK + +PV M
Sbjct: 1 MYKVNDTVLYNTHGVCKIVGISEKDFGGNHTSCYALKPVYRDKSMVFIPVNSNNALSKMH 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR-----T 125
++ A + +K + + V +R + Y+ + D + +++ LH
Sbjct: 61 RILSADQIYSLIKALPAEYPVWIQDKDQRKEYYEKVLLGEDREELIILIKTLHVYHQSLL 120
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
D + ++R + A ++ E A V +I E I I +
Sbjct: 121 DQGKKMHAADRYFMKEAEKKLHEEFAYVLNIKPDEVIPFITEQIK 165
>gi|89892935|ref|YP_516422.1| hypothetical protein DSY0189 [Desulfitobacterium hafniense Y51]
gi|89332383|dbj|BAE81978.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 1178
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 68/178 (38%), Gaps = 22/178 (12%)
Query: 4 QQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++K+ + + G+ +V+ HG+G I+ V G++ ++F + +
Sbjct: 487 KRKKAPEKTGQRLQFADLKPGDFVVHVHHGIGQFMGIERIAVGGVEKDYFSVKYAGQD-K 545
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VP+ + + S+A + + KL + ++ AK S
Sbjct: 546 LYVPLDQLNFLQKYLGSDAETLPKLYKLGGSE-----------WKKVKAKAKSAIKEMAF 594
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++V+ + ++ ++S +++ + + + + I ++ ++ +
Sbjct: 595 DLVKLYAQREATKGYAFSPDNVWQ---QEFEEKFPYQETPDQMQCIVEVKQDMMRQRP 649
>gi|332186186|ref|ZP_08387932.1| transcription-repair coupling factor [Sphingomonas sp. S17]
gi|332014001|gb|EGI56060.1| transcription-repair coupling factor [Sphingomonas sp. S17]
Length = 1155
Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 23/177 (12%)
Query: 3 FQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K A G+ +V+ HG+G + V + V L
Sbjct: 473 KRRKSADAFLAELATLSPGDLVVHSDHGIGRYEGLTSIPVGKSPHDC-VALSYAGGDKLY 531
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VPV + R S L + G+A W RR + + I E+
Sbjct: 532 VPVENLE-VLTRYGSGEDG--ATLDRLGGEA------WQRRKSKMKER--------IREI 574
Query: 119 VRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+L T ++ E +SA V + + AI+ + +L++
Sbjct: 575 AGELIATAAERALRPGEVAEPDSAGYPAFVDRFPYEETDDQDRAIDDVLGDLTAGKP 631
>gi|322386426|ref|ZP_08060055.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
51100]
gi|321269512|gb|EFX52443.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
51100]
Length = 1167
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ EV+G+ ++ ++ + +PV + +
Sbjct: 491 ELEKGDYVVHNIHGIGRYLGIETIEVSGVHRDYL-TIQYQNADRISIPVDQINLLSKYVA 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + R Q+ K+ ++++
Sbjct: 550 S------------DGKAPKINKLNDGRFQKTKQKVQHQVEDIADDLIKLYAERSQLKGFQ 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + V + + +I I+ ++ S
Sbjct: 598 FSSD---DQHQVEFDNAFPYVETEDQLRSIQEIKKDMESDRP 636
>gi|308186433|ref|YP_003930564.1| Transcription-repair-coupling factor [Pantoea vagans C9-1]
gi|308056943|gb|ADO09115.1| Transcription-repair-coupling factor [Pantoea vagans C9-1]
Length = 1154
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G++ E+ +
Sbjct: 462 SRRRQDTRRTINPDILIRNLAELHPGQPVVHLEHGVGRYIGLTTLEAGGIEAEYL-MLSY 520
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I + S K
Sbjct: 521 ANDAKLYVPVSSLHLISRYAGGADDNAP------------LHKLGSDAWSRARQKAAEKV 568
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ + + + +AIN + ++
Sbjct: 569 RDVAAELLDIYAQRAAKTGFAFKHDR---EQYQLFCESFPFETTPDQAQAINAVLSDMCQ 625
Query: 172 KSS 174
+
Sbjct: 626 PLA 628
>gi|292493142|ref|YP_003528581.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
gi|291581737|gb|ADE16194.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
Length = 1158
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDAMRQ---------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M ++++ R G +V+ HGVG ++ EV ++ EF
Sbjct: 465 MQQRRRKGRTRDTDAVVRDLVELSIGAPVVHEEHGVGRYLGLQTLEVGKVRTEFM-ALEY 523
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
D L VPV I + ++ W R ++ ++ D
Sbjct: 524 ADGDKLYVPVSSLHLISRYTGASPEAAP--------LHKLGSGQWERAKRKARERVR--D 573
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ A + +P + R+ + + +AI + +L+S
Sbjct: 574 VAAELLAIYAQRAARKKPALPPPDSH-----YAAFARDFPFEETPDQADAIEAVIADLTS 628
Query: 172 KSS 174
+
Sbjct: 629 EKP 631
>gi|114567389|ref|YP_754543.1| transcriptional regulator [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338324|gb|ABI69172.1| transcriptional regulator, CarD family [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 166
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 67/166 (40%), Gaps = 8/166 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGM-KLEFFV-IAFDKDKMCLKVPVGKAIDIGMR 70
F+ +++VY +GV I +I++ + E+++ + + +I MR
Sbjct: 1 MFKVKDYVVYGLNGVCQIADIRKDNYDNSNETEYYILKPVYNTSITSIMVPVNNSNIMMR 60
Query: 71 KLSEAHFVERALKLVRGKARV-KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ- 128
+S + V + + ++R +Y A + +G ++++ L++
Sbjct: 61 AISTKNDVLSLIAKMPDIETTSWIDNDTQRTNQYKAALRTGKTEEWVKIIKTLYQEKKAR 120
Query: 129 ----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ + ++ L +A + E A IS E ++ I ++S
Sbjct: 121 SAVGRKLTTTDEGLLNTAEKHLNEEFAIALDISPDEVVSYIRKHIS 166
>gi|148548800|ref|YP_001268902.1| transcription-repair coupling factor [Pseudomonas putida F1]
gi|148512858|gb|ABQ79718.1| transcription-repair coupling factor [Pseudomonas putida F1]
Length = 1149
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFL-TLEYAENAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + AI + ++ +
Sbjct: 584 AFAD---PSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKP 623
>gi|167032697|ref|YP_001667928.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
gi|166859185|gb|ABY97592.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
Length = 1141
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G EF + L VPV I
Sbjct: 469 TELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFL-TLEYAENAKLYVPVANLHLIARYT 527
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 528 GSDDALAP------------LHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGY 575
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + AI + ++ +
Sbjct: 576 AFAD---PSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKP 615
>gi|307544803|ref|YP_003897282.1| transcription-repair coupling factor [Halomonas elongata DSM 2581]
gi|307216827|emb|CBV42097.1| K03723 transcription-repair coupling factor (superfamily II
helicase) [Halomonas elongata DSM 2581]
Length = 1148
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 24/181 (13%)
Query: 2 TFQQKRDAM--------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
+ ++++ R G +V+ AHGVG ++ E G EF V D
Sbjct: 456 SRRREKATDDDELAIRHLSELRPGAPVVHQAHGVGRYLGLETLETGGQAAEF-VALEYAD 514
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L VPV I ++ + S + + K
Sbjct: 515 GAKLYVPVDSLHLISRYAGADDELAP------------LHRLGSEQWDKAKKKAAEKIRD 562
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
AE++ R +++ + Q+ ++ R + + AI + ++++
Sbjct: 563 TAAELLDIYARREAREGFAC---QMPDAEYARFAASFPFEETPDQRVAIQSVLADMTAPR 619
Query: 174 S 174
Sbjct: 620 P 620
>gi|289757102|ref|ZP_06516480.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
[Mycobacterium tuberculosis T85]
gi|289712666|gb|EFD76678.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
[Mycobacterium tuberculosis T85]
Length = 849
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 120 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 179
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 180 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 225
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 226 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 282
Query: 173 SS 174
Sbjct: 283 IP 284
>gi|289568998|ref|ZP_06449225.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis T17]
gi|289542752|gb|EFD46400.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis T17]
Length = 697
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 505 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 565 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 611 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 667
Query: 173 SS 174
Sbjct: 668 IP 669
>gi|289555197|ref|ZP_06444407.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd
[Mycobacterium tuberculosis KZN 605]
gi|289439829|gb|EFD22322.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd
[Mycobacterium tuberculosis KZN 605]
Length = 824
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 95 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 154
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 155 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 200
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 201 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 257
Query: 173 SS 174
Sbjct: 258 IP 259
>gi|260204238|ref|ZP_05771729.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis K85]
gi|289573660|ref|ZP_06453887.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis K85]
gi|289538091|gb|EFD42669.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis K85]
Length = 1234
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 505 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 565 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 611 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 667
Query: 173 SS 174
Sbjct: 668 IP 669
>gi|254550004|ref|ZP_05140451.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
Length = 1234
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 505 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 565 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 611 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 667
Query: 173 SS 174
Sbjct: 668 IP 669
>gi|218752691|ref|ZP_03531487.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis GM 1503]
gi|289761156|ref|ZP_06520534.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis GM 1503]
gi|289708662|gb|EFD72678.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis GM 1503]
Length = 1234
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 505 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 565 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 611 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 667
Query: 173 SS 174
Sbjct: 668 IP 669
>gi|215429881|ref|ZP_03427800.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis EAS054]
gi|260200049|ref|ZP_05767540.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis T46]
gi|289442441|ref|ZP_06432185.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis T46]
gi|289753081|ref|ZP_06512459.1| transcription-repair coupling factor Mfd [Mycobacterium
tuberculosis EAS054]
gi|289415360|gb|EFD12600.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis T46]
gi|289693668|gb|EFD61097.1| transcription-repair coupling factor Mfd [Mycobacterium
tuberculosis EAS054]
Length = 1234
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 505 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 565 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 611 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 667
Query: 173 SS 174
Sbjct: 668 IP 669
>gi|215426299|ref|ZP_03424218.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis T92]
gi|289749550|ref|ZP_06508928.1| transcription-repair coupling factor [Mycobacterium tuberculosis
T92]
gi|289690137|gb|EFD57566.1| transcription-repair coupling factor [Mycobacterium tuberculosis
T92]
Length = 571
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 362 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 421
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 422 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 467
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 468 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 524
Query: 173 SS 174
Sbjct: 525 IP 526
>gi|215410623|ref|ZP_03419431.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis 94_M4241A]
gi|298524516|ref|ZP_07011925.1| transcription-repair coupling factor [Mycobacterium tuberculosis
94_M4241A]
gi|298494310|gb|EFI29604.1| transcription-repair coupling factor [Mycobacterium tuberculosis
94_M4241A]
Length = 1234
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 505 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 565 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 611 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 667
Query: 173 SS 174
Sbjct: 668 IP 669
>gi|167468531|ref|ZP_02333235.1| transcription-repair coupling factor [Yersinia pestis FV-1]
Length = 776
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 83 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYA 142
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I + S K
Sbjct: 143 GED-KLYVPVSSLHLISRYSGGADDNAP------------LHRLGSDVWSRARQKAAEKV 189
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + + + + + + + +AIN + ++
Sbjct: 190 RDVAAELLDIYAQRAVKSGFKFKHDR---EQYQLFCQSFPFETTPDQEQAINAVLSDMCQ 246
Query: 172 KSS 174
+
Sbjct: 247 PLA 249
>gi|15608160|ref|NP_215536.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium
tuberculosis H37Rv]
gi|15840448|ref|NP_335485.1| transcription-repair coupling factor [Mycobacterium tuberculosis
CDC1551]
gi|31792211|ref|NP_854704.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium
bovis AF2122/97]
gi|121636949|ref|YP_977172.1| putative transcription-repair coupling factor mfd [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148660802|ref|YP_001282325.1| transcription-repair coupling factor [Mycobacterium tuberculosis
H37Ra]
gi|148822229|ref|YP_001286983.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis F11]
gi|167968120|ref|ZP_02550397.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis H37Ra]
gi|215402835|ref|ZP_03415016.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis 02_1987]
gi|224989421|ref|YP_002644108.1| putative transcription-repair coupling factor [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253799950|ref|YP_003032951.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis KZN 1435]
gi|254363936|ref|ZP_04979982.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis str. Haarlem]
gi|260185931|ref|ZP_05763405.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis CPHL_A]
gi|289446601|ref|ZP_06436345.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis CPHL_A]
gi|289744756|ref|ZP_06504134.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis 02_1987]
gi|297633546|ref|ZP_06951326.1| transcription-repair coupling factor [Mycobacterium tuberculosis
KZN 4207]
gi|297730531|ref|ZP_06959649.1| transcription-repair coupling factor [Mycobacterium tuberculosis
KZN R506]
gi|306775155|ref|ZP_07413492.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu001]
gi|306781930|ref|ZP_07420267.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu002]
gi|306783715|ref|ZP_07422037.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu003]
gi|306788070|ref|ZP_07426392.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu004]
gi|306792403|ref|ZP_07430705.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu005]
gi|306796806|ref|ZP_07435108.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu006]
gi|306802692|ref|ZP_07439360.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu008]
gi|306806871|ref|ZP_07443539.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu007]
gi|306967072|ref|ZP_07479733.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu009]
gi|306971262|ref|ZP_07483923.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu010]
gi|307078991|ref|ZP_07488161.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu011]
gi|307083551|ref|ZP_07492664.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu012]
gi|313657860|ref|ZP_07814740.1| transcription-repair coupling factor [Mycobacterium tuberculosis
KZN V2475]
gi|54037787|sp|P64327|MFD_MYCBO RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|54041091|sp|P64326|MFD_MYCTU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|3261715|emb|CAB06859.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF)
[Mycobacterium tuberculosis H37Rv]
gi|13880619|gb|AAK45299.1| transcription-repair coupling factor [Mycobacterium tuberculosis
CDC1551]
gi|31617799|emb|CAD93908.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF)
[Mycobacterium bovis AF2122/97]
gi|121492596|emb|CAL71064.1| Probable transcription-repair coupling factor mfd [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|134149450|gb|EBA41495.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis str. Haarlem]
gi|148504954|gb|ABQ72763.1| transcription-repair coupling factor [Mycobacterium tuberculosis
H37Ra]
gi|148720756|gb|ABR05381.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis F11]
gi|224772534|dbj|BAH25340.1| putative transcription-repair coupling factor [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253321453|gb|ACT26056.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis KZN 1435]
gi|289419559|gb|EFD16760.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis CPHL_A]
gi|289685284|gb|EFD52772.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis 02_1987]
gi|308216305|gb|EFO75704.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu001]
gi|308325321|gb|EFP14172.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu002]
gi|308331498|gb|EFP20349.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu003]
gi|308335304|gb|EFP24155.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu004]
gi|308339112|gb|EFP27963.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu005]
gi|308342784|gb|EFP31635.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu006]
gi|308346693|gb|EFP35544.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu007]
gi|308350608|gb|EFP39459.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu008]
gi|308355241|gb|EFP44092.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu009]
gi|308359196|gb|EFP48047.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu010]
gi|308363098|gb|EFP51949.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu011]
gi|308366762|gb|EFP55613.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis SUMu012]
gi|323720520|gb|EGB29602.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis CDC1551A]
gi|326904753|gb|EGE51686.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis W-148]
gi|328459693|gb|AEB05116.1| transcription-repair coupling factor mfd [Mycobacterium
tuberculosis KZN 4207]
Length = 1234
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF--------DK 52
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 505 LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAK 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ + V G+A + K
Sbjct: 565 NTDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVR 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 611 EIAGELVSLYAKRQASPGHAFSPDTPWQA---ELEDAFGFTETVDQLTAIEEVKADMEKP 667
Query: 173 SS 174
Sbjct: 668 IP 669
>gi|227111702|ref|ZP_03825358.1| transcription-repair coupling factor [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 1149
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 59/183 (32%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 455 SRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A K
Sbjct: 515 GED-KLYVPVSSLHLISRYAGGADE--NAPLHKLGGDA----------WSRARQKAAERV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ ++ + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAAKSGFAFKHD---KTQYQLFCESFPFETTPDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|83593061|ref|YP_426813.1| transcription-repair coupling factor [Rhodospirillum rubrum ATCC
11170]
gi|83575975|gb|ABC22526.1| Transcription-repair coupling factor [Rhodospirillum rubrum ATCC
11170]
Length = 1177
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 54/179 (30%), Gaps = 24/179 (13%)
Query: 2 TFQQKRDAMR-----QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++K+ + G+ +V+ HG+G ++ G + + + +
Sbjct: 486 PVRKKKLGDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNN-R 544
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VPV + R SE V+ ++ W R + + I
Sbjct: 545 LYVPVENIE-VLSRYGSEQAGVQ--------LDKLGGVAWQARKAKLKQR--------IR 587
Query: 117 EVVRDLHRTDSQPEKSYSE-RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ L + + E E + + + AI +L++
Sbjct: 588 DMAEQLIGVAAARQLKVGEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRP 646
>gi|26988872|ref|NP_744297.1| transcription-repair coupling factor [Pseudomonas putida KT2440]
gi|24983679|gb|AAN67761.1|AE016407_5 transcription-repair coupling factor [Pseudomonas putida KT2440]
Length = 1149
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFL-TLEYAENAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + AI + ++ +
Sbjct: 584 AFAD---PSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKP 623
>gi|326387814|ref|ZP_08209420.1| transcription-repair coupling factor [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207860|gb|EGD58671.1| transcription-repair coupling factor [Novosphingobium
nitrogenifigens DSM 19370]
Length = 1161
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ HG+G ++ V + V L +PV +
Sbjct: 480 AELSALNPGDLVVHMEHGIGRYDGLEAINVGNSPHDC-VQLTYAGGDKLYIPVENLDVLS 538
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
AL + G+A K + I E+ L T +Q
Sbjct: 539 RY---GHESDGVALDRLGGEA--------------WQKRKARLRERILEMAGQLMATAAQ 581
Query: 129 PEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + A V + + AI + +++S
Sbjct: 582 RALRQADPLETDPASYGPFVDRFPWNETEDQERAIEDVLGDMASGKP 628
>gi|313201057|ref|YP_004039715.1| transcription-repair coupling factor [Methylovorus sp. MP688]
gi|312440373|gb|ADQ84479.1| transcription-repair coupling factor [Methylovorus sp. MP688]
Length = 1139
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 41/166 (24%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R + +V+ HGVG + + + EF ++ + L VPV + I
Sbjct: 470 DLSELREQDPVVHEQHGVGRYKGLVNLDFGEGETEFLLLEYAG-DDKLYVPVSQLFLISR 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
L + K L I + +L +Q
Sbjct: 529 YSGGPPESAP--LHRLGSGQ--------------WEKAKKKALKQIRDTAAELLNLYAQR 572
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + AI + ++ S
Sbjct: 573 AARKGHAFTLTLQDYEAFAEGFPFEETPDQLSAIEAVISDMQSGRP 618
>gi|313499733|gb|ADR61099.1| Mfd [Pseudomonas putida BIRD-1]
Length = 1141
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G EF + L VPV I
Sbjct: 469 TELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFL-TLEYAENAKLYVPVANLHLIARYT 527
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 528 GSDDALAP------------LHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGY 575
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + AI + ++ +
Sbjct: 576 AFAD---PSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKP 615
>gi|282890191|ref|ZP_06298721.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499848|gb|EFB42137.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 1103
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
G+ +V+ HG+G ++ + G+ EFF+I + + L VP+ +A + S
Sbjct: 456 PGDMVVHLNHGIGRFLGLEKKLNHNGVLSEFFLIEYA-ENGKLYVPLNQAHLVTKYIGSS 514
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
T+ S R ++ + AI +DL + +
Sbjct: 515 EDL------------PSMHTLGSARWKKTKERTQ----EAIVGYAKDLLQLYAHRSLKAG 558
Query: 135 ERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+S + + + + AI I+ ++ S
Sbjct: 559 LIYPSDSIDMQDFEEDFPYEETEDQLNAIASIKEDMQSTK 598
>gi|94984278|ref|YP_603642.1| CarD family transcriptional regulator [Deinococcus geothermalis DSM
11300]
gi|94554559|gb|ABF44473.1| transcriptional regulator, CarD family [Deinococcus geothermalis
DSM 11300]
Length = 167
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 1/162 (0%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
FRTG+ +V P +G+G ++ ++ VAG ++ + F VPV G+R
Sbjct: 6 FRTGDRVVLPPYGIGVVSGTCQRPVAGSIQVYYQVDFPNTASRAFVPVDAPQSTGLRAAL 65
Query: 74 EAHFVERALKLVRGKAR-VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
A + L+ ++ W+ R + + GD IA + +L R + +
Sbjct: 66 TAADMPGLLQRLQSSQTLNLPRQWAARHRRVTEILVGGDPYEIATLTCELRRWNMERGLP 125
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+RQ + A+ + +E+ + + L+ + +
Sbjct: 126 DLDRQAFRRAIRLLEQEVRGLEDPCAQDVQRLLNHVWNETPN 167
>gi|116490296|ref|YP_809840.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
gi|116091021|gb|ABJ56175.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
Length = 1188
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 61/168 (36%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ +TG+++V+ HG+G + E G K ++ IA+ + K + VPV
Sbjct: 504 KITSYTELKTGDYVVHVNHGIGRYEGLTTLEANGGKQDYITIAYAQ-KAKIFVPVTHLNL 562
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + + ++ S + ++ + E++ + +
Sbjct: 563 VQKYIGAADGRPK------------VNSLNSTDWAKTKRRVTAKVEDIADELIALYSKRE 610
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S + + A ++ + +I I+ ++ +K
Sbjct: 611 GEVGYAFS---VDDQRQQEFDDGFAYPETVDQLRSIKEIKSDMENKKP 655
>gi|283856518|ref|YP_163381.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
mobilis ZM4]
gi|283775523|gb|AAV90270.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 1167
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 23/178 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K A G+ +V+ HG+G + V + V + L
Sbjct: 480 AKKRKSADAFMAELATLSIGDLVVHSDHGIGCYDGLVSIPVGNAPHDC-VALSYQGGDKL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + L + G A W R + + I
Sbjct: 539 YVPVENIDTLSRY---GNASESTVLDKLGGVA------WQARKSKMKER--------IRA 581
Query: 118 VVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L T +Q + L + A V + + AI+ + +L+
Sbjct: 582 IAGQLMATAAQRALRQAPVALADPASYPVFVDRFPYQETEDQEHAISDVIEDLAKGKP 639
>gi|260753800|ref|YP_003226693.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258553163|gb|ACV76109.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 1167
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 23/178 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K A G+ +V+ HG+G + V + V + L
Sbjct: 480 AKKRKSADAFMAELATLSIGDLVVHSDHGIGCYDGLVSIPVGNAPHDC-VALSYQGGDKL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + L + G A W R + + I
Sbjct: 539 YVPVENIDTLSRY---GNASESTVLDKLGGVA------WQARKSKMKER--------IRA 581
Query: 118 VVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L T +Q + L + A V + + AI+ + +L+
Sbjct: 582 IAGQLMATAAQRALRQAPVALADPASYPVFVDRFPYQETEDQEHAISDVIEDLAKGKP 639
>gi|241762219|ref|ZP_04760301.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241373266|gb|EER62885.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 1167
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 23/178 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K A G+ +V+ HG+G + V + V + L
Sbjct: 480 AKKRKSADAFMAELATLSIGDLVVHSDHGIGCYDGLVSIPVGNAPHDC-VALSYQGGDKL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + L + G A W R + + I
Sbjct: 539 YVPVENIDTLSRY---GNASESTVLDKLGGVA------WQARKSKMKER--------IRA 581
Query: 118 VVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L T +Q + L + A V + + AI+ + +L+
Sbjct: 582 IAGQLMATAAQRALRQAPVALADPASYPVFVDRFPYQETEDQEHAISDVIEDLAKGKP 639
>gi|313892911|ref|ZP_07826488.1| transcription-repair coupling factor [Veillonella sp. oral taxon
158 str. F0412]
gi|313442264|gb|EFR60679.1| transcription-repair coupling factor [Veillonella sp. oral taxon
158 str. F0412]
Length = 1055
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + G+++V+ HG+G +K E G+ ++ IA+ L +P
Sbjct: 413 PKKGQEINYFTDLTPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPA 471
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ +E M R + K ++V
Sbjct: 472 NNLDQLQKYIGNEGDV------------PRIHKMGGRDWAKVVTKAKKSIDDLADKLVEI 519
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ Q ++ + + +A I+ ++
Sbjct: 520 YAQREITEGFAFLPDQPWQ---QEFEDAFPYEETEDQLQATAEIKESMERPVP 569
>gi|239825634|ref|YP_002948258.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
gi|239805927|gb|ACS22992.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
Length = 1177
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G I+ E+ G+ ++ I + L VPV + +
Sbjct: 498 SELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHI-QYQGSDTLYVPVDQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + ++ K+ S ++++ ++
Sbjct: 557 GSE------------GKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I I+ ++ S
Sbjct: 605 AFSPDTEMQR---EFEAAFPYQETEDQLRSIEEIKRDMESDKP 644
>gi|146340719|ref|YP_001205767.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278]
gi|146193525|emb|CAL77541.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278]
Length = 1172
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 54/167 (32%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G ++ EVAG + + + + L +PV +
Sbjct: 495 SEVTSLAIGDIVVHVDHGIGRFVGLQTLEVAGAPHDCLELRYAG-ETKLYLPVENIELLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + ++ + W R + + I E+ +L + ++
Sbjct: 554 RYGSDQTNV---------ELDKLGGSGWQTRKAKLKNR--------IREMAGELIKIAAE 596
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + + + AI +L +
Sbjct: 597 RMLHEAPKMPVQAGLYDEFCARFPYDETEDQLAAIQATLGDLEAGRP 643
>gi|290889683|ref|ZP_06552772.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
gi|290480680|gb|EFD89315.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
Length = 1188
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 61/168 (36%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ +TG+++V+ HG+G + E G K ++ IA+ + K + VPV
Sbjct: 504 KITSYTELKTGDYVVHVNHGIGRYEGLTTLEANGGKQDYITIAYAQ-KAKIFVPVTHLNL 562
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + + ++ S + ++ + E++ + +
Sbjct: 563 VQKYIGAADGRPK------------VNSLNSTDWAKTKRRVTAKVEDIADELIALYSKRE 610
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S + + A ++ + +I I+ ++ +K
Sbjct: 611 GEVGYAFS---VDDQRQQEFDDGFAYPETVDQLRSIKEIKSDMENKKP 655
>gi|91776101|ref|YP_545857.1| transcription-repair coupling factor [Methylobacillus flagellatus
KT]
gi|91710088|gb|ABE50016.1| transcription-repair coupling factor [Methylobacillus flagellatus
KT]
Length = 1134
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/178 (12%), Positives = 47/178 (26%), Gaps = 23/178 (12%)
Query: 3 FQQKRDAM-----RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R+ R + +V+ HGVG + + + EF ++ + L
Sbjct: 453 KEKQRNTEGMLKDLSELREHDPVVHEQHGVGRYRGLVNIDFGEGETEFLLLEYAG-DDKL 511
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + I L + + K L + +
Sbjct: 512 YVPVSQLFLISRYSGGPPESAP--LHRLGSG--------------HWEKAKKKALKQVRD 555
Query: 118 VVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+L +Q + + AI + ++ S
Sbjct: 556 TAAELLNLYAQRAARKGHAFKLGLHDYEAFAEGFPFEETADQLAAIEAVISDMQSGRP 613
>gi|293396556|ref|ZP_06640832.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
gi|291420820|gb|EFE94073.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
Length = 1159
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ ++++ L VPV I
Sbjct: 486 ELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAG-DDKLYVPVSSLHLISRYAG 544
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 545 GADESAP--LHKLGGDA----------WTRARQKAAEKVRDVAAELLDIYAQRAAKSGYA 592
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + +AIN + ++ +
Sbjct: 593 FKHDR---EQYQLFCQTFPFETTPDQEQAINAVLSDMCQPLA 631
>gi|326405611|gb|ADZ62682.1| transcription-repair coupling factor [Lactococcus lactis subsp.
lactis CV56]
Length = 1161
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HG+G ++ EV GM ++ ++ + VPV +
Sbjct: 484 ELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYL-TIQYQNGDTISVPVDHLDLLSKYTA 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E GK+ + R ++ + ++ ++++ ++ +
Sbjct: 543 GE------------GKSPKINKLNDGRWRKTMSYVSKQVEDISDDLIKLYAERQAKKGFA 590
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +++ + V + + +IN I+ ++ +
Sbjct: 591 FSPD---DTSQEEFDSGFSYVETEDQMRSINEIKHDMELERP 629
>gi|269798420|ref|YP_003312320.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
gi|269095049|gb|ACZ25040.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
Length = 1098
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + G+++V+ HG+G +K E G+ ++ IA+ L +P
Sbjct: 413 PKKGQEINYFTDLTPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPA 471
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ +E M R + K ++V
Sbjct: 472 NNLDQLQKYIGNEGDV------------PRIHKMGGRDWAKVVTKAKKSIDDLADKLVEI 519
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ Q ++ + + +A I+ ++
Sbjct: 520 YAQREITEGFAFLPDQPWQ---QEFEDAFPYEETEDQLQATAEIKESMERPVP 569
>gi|187935638|ref|YP_001884929.1| CarD family transcriptional regulator [Clostridium botulinum B str.
Eklund 17B]
gi|187723791|gb|ACD25012.1| transcriptional regulator, CarD family [Clostridium botulinum B
str. Eklund 17B]
Length = 163
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ IVYP+ GVG I I E G ++ I + M L +PV + D+ +R +
Sbjct: 1 MFNIGDKIVYPSQGVGIIELIGEMLFKGEIQNYYKIHIFNNNMTLTLPVNRVEDLNIRLV 60
Query: 73 SEAHFVERALKLVRG----KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
S++ ++ L+ V+ + ++ + +RA + KI SG L EV+ +L + Q
Sbjct: 61 SDSETLDSVLENVKDFTTNIEELNKSDFKQRAAINNQKIKSGTLTDYLEVIYNLTKVKEQ 120
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ SE+ + +V EI+ ++S +A +L+ + ++
Sbjct: 121 HSLNSSEKDTLRKTVKTLVEEISQSKNLSNDDASSLLNLAIN 162
>gi|329117227|ref|ZP_08245944.1| transcription-repair coupling factor [Streptococcus parauberis NCFD
2020]
gi|326907632|gb|EGE54546.1| transcription-repair coupling factor [Streptococcus parauberis NCFD
2020]
Length = 1167
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 487 ELAIGDYVVHNVHGIGKFLGIETIEIHGVHRD-YVTIQYQNSDRISLPVEQIESLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVTKQVEEIADDLLKLYAERSQLKGYQ 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +++ A V + + + I+ ++ S
Sbjct: 594 FSPDDELQAS---FEDNFAFVETDDQIRSSKEIKRDMESSHP 632
>gi|312883532|ref|ZP_07743257.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368755|gb|EFP96282.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 1154
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G T ++ EV G+ E +V +++ L VPV I
Sbjct: 480 ELKPGQPVVHIDHGIGRYTGLQTLEVGGITTE-YVTLEYQNEAKLYVPVAALNLISRYSG 538
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E +K + +V +L ++ E
Sbjct: 539 GAEDSA----------------PLHKLGSESWSKARRKAAEKVRDVAAELLDVYAKRELK 582
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 583 PGFQFQLDRGQYATFKAGFPFEETDDQAMAINAVMSDMCQAKA 625
>gi|217970622|ref|YP_002355856.1| transcription-repair coupling factor [Thauera sp. MZ1T]
gi|217507949|gb|ACK54960.1| transcription-repair coupling factor [Thauera sp. MZ1T]
Length = 1157
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ +HG+G + + EF + L VPV + I
Sbjct: 487 DLSELKIGDPVVHVSHGIGRYLGLLHMNLGEGDTEFLHLE-YNGGDKLYVPVSQLHVITR 545
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ V+ L + K + + + +L +Q
Sbjct: 546 YAGADPEAVD--LHRLGSGQ--------------WEKAKKKAAMQVRDTAAELLALYAQR 589
Query: 130 EKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R ++ L + + AI+ + ++ S
Sbjct: 590 AARPGHRFDFKQHDLEAFAEAFGFETTPDQQAAIDAVVADMKSGRP 635
>gi|15602906|ref|NP_245978.1| hypothetical protein PM1041 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721375|gb|AAK03125.1| Mfd [Pasteurella multocida subsp. multocida str. Pm70]
Length = 1145
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + E G+ E+ ++ + +
Sbjct: 459 SRDKRKSVNPDTLIRNLAELKIGQPVVHLDHGVGRYAGLVTLENGGITAEYLLLNYAN-E 517
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + S K
Sbjct: 518 SKLYVPVSSLHLISRYVGGADETAP------------LHKLGSDAWVRARQKAAEKIRDV 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + ++Q ++ A + ++ + AIN + ++ +
Sbjct: 566 AAELLDVYAQREAQKGFAF---HYDREAFQQFAATFPFEETVDQEMAINAVIADMCQAKA 622
>gi|229917522|ref|YP_002886168.1| CarD family transcriptional regulator [Exiguobacterium sp. AT1b]
gi|229468951|gb|ACQ70723.1| transcriptional regulator, CarD family [Exiguobacterium sp. AT1b]
Length = 172
Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV-PVGKAIDIGMRK 71
F+TG+ I+Y HGV I +I ++ VAG ++ + + L++ ++ M
Sbjct: 1 MFKTGDLIIYSTHGVCRIDDISDKTVAGETKSYYTLHPINNSQKLQISIPVDNDNVMMLT 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT-----D 126
L EA L+ R + R +E+ ++SG+ IA+VV L R
Sbjct: 61 LLEADEASEILESFRSPGVEWNPHSNNRNREFLNVVHSGNRHEIAQVVNTLSRRQIEALQ 120
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + +R++ E+A +V+E++ SE + I L
Sbjct: 121 ANKKLYEQDRKILENAKTILVKELSLALERSESDIERTIGEYL 163
>gi|15671995|ref|NP_266169.1| transcription-repair coupling factor [Lactococcus lactis subsp.
lactis Il1403]
gi|12722849|gb|AAK04111.1|AE006240_9 transcription-repair coupling factor [Lactococcus lactis subsp.
lactis Il1403]
Length = 1161
Score = 94.9 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HG+G ++ EV GM ++ ++ + VPV +
Sbjct: 484 ELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYL-TIQYQNGDTISVPVDHLDLLSKYTA 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E GK+ + R ++ + ++ ++++ ++ +
Sbjct: 543 GE------------GKSPKINKLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKKGFA 590
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +++ + V + + +IN I+ ++ +
Sbjct: 591 FSPD---DTSQEEFDSGFSYVETEDQMRSINEIKHDMELERP 629
>gi|118587141|ref|ZP_01544570.1| transcription-repair coupling factor [Oenococcus oeni ATCC
BAA-1163]
gi|118432420|gb|EAV39157.1| transcription-repair coupling factor [Oenococcus oeni ATCC
BAA-1163]
Length = 1189
Score = 94.9 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 61/168 (36%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ +TG+++V+ HG+G + E G K ++ IA+ + K + VPV
Sbjct: 505 KITSYTELKTGDYVVHVNHGIGRYEGLTTLEANGGKQDYITIAYAQ-KAKIFVPVTHLNL 563
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + + ++ S + ++ + E++ + +
Sbjct: 564 VQKYIGAADGRPK------------VNSLNSTDWAKTKRRVTAKVEDIADELIALYSKRE 611
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S + + A ++ + +I I+ ++ +K
Sbjct: 612 GEVGYAFS---VDDQRQQEFDDGFAYPETVDQLRSIKEIKSDMENKKP 656
>gi|227499516|ref|ZP_03929623.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC
35098]
gi|227218395|gb|EEI83646.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC
35098]
Length = 1170
Score = 94.9 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 62/172 (36%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ G+++V+ +G+G +++ EV ++ +F VI + L +PV
Sbjct: 492 TSSRDIINYSDLEIGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIE-YRASDRLYIPVD 550
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + S RG+ ++ ++ Q+ A+ ++V
Sbjct: 551 QMNLVSKYIGS------------RGENPKLSSLGTQAWQKAKARAKRAVDEIADDLVELY 598
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S ++S + S+ +I+ I+ ++ S
Sbjct: 599 AKRSKIKGHAFSSDTPWQS---EFENSFPYEETYSQIRSIDEIKNDMESDKP 647
>gi|163731753|ref|ZP_02139200.1| transcription-repair coupling factor [Roseobacter litoralis Och
149]
gi|161395207|gb|EDQ19529.1| transcription-repair coupling factor [Roseobacter litoralis Och
149]
Length = 1154
Score = 94.9 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 24/178 (13%)
Query: 2 TFQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
+ ++KR Q G+ IV+ HG+G ++ AG E ++ + +
Sbjct: 459 STRKKRRAENFLTETQSLSPGDLIVHVDHGIGRYRGLEVITAAGAAHECILLEYA-ESSK 517
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L +PV + E L + G A Q A++
Sbjct: 518 LYLPVENIELLSKY-----GHEEGLLDRLGGGA----------WQAKKARLKERIREIAE 562
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++R + + + + AI + +++S +
Sbjct: 563 KLIRVAAERALRKAPVLEPPPGM---WDAFSARFPYTETDDQLRAIEDVIDDMTSGNP 617
>gi|188583862|ref|YP_001927307.1| transcription-repair coupling factor [Methylobacterium populi
BJ001]
gi|179347360|gb|ACB82772.1| transcription-repair coupling factor [Methylobacterium populi
BJ001]
Length = 1200
Score = 94.9 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 20/174 (11%)
Query: 3 FQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
++ +D Q + G+ +V+ HG+G +K AG + + + L +P
Sbjct: 515 SKRPQDIILEVQALQPGDLVVHADHGIGRFVGLKTVTAAGAPHDCLELQYAG--GLLLLP 572
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V + + E AL + G A Q AK+ L E+++
Sbjct: 573 VENIELLTRY---GSEDSEVALDRLGGGA----------WQARKAKMKRRILEMAGELIK 619
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+P S + E A + + AI+ + +L++
Sbjct: 620 VAAARFVKPAPSL---KAPEGLYEEFAARFAFQETEDQANAIDAVLDDLNAGRP 670
>gi|88856044|ref|ZP_01130705.1| transcription-repair coupling factor [marine actinobacterium
PHSC20C1]
gi|88814612|gb|EAR24473.1| transcription-repair coupling factor [marine actinobacterium
PHSC20C1]
Length = 1202
Score = 94.9 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 57/174 (32%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ ++K +G+ +V+ HG+G E+ ++V+ + + L+
Sbjct: 493 LATRRKNVVDPLQLTSGDFVVHHTHGIGKFLELVTRQVSTGGRNAVKTQREF--LVLEYA 550
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G + ++ + V G+A M K E+V+
Sbjct: 551 PNKRGYPGDKLYVPTDQLDLLSRYVGGEAPTLNKMGGSDWSAAKTKARKAVRDIAVELVK 610
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S ++ + A + + I+ ++ ++ S
Sbjct: 611 LYSARMASRGHAFSPDTPWQR---ELEEAFAFAETPDQLTTIDEVKADMQSPVP 661
>gi|300743898|ref|ZP_07072918.1| transcription-repair coupling factor [Rothia dentocariosa M567]
gi|300380259|gb|EFJ76822.1| transcription-repair coupling factor [Rothia dentocariosa M567]
Length = 1229
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 59/173 (34%), Gaps = 4/173 (2%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+++V+ HG+G E+ + VAG+ + K+ + ++
Sbjct: 524 PRKRRNAVDPLALTPGDYVVHERHGIGNFIEMVSRPVAGVSSKHG-ETPLKEYLVIEYAP 582
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K R + ++ V + M + + A++V+
Sbjct: 583 SKRGGAPDRLFVPSDQLDLISHYVGSETPTLSKMGGSDWAKTKNRARKAVKEIAADLVKL 642
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++SE ++ + + + AI+ ++ ++ +
Sbjct: 643 YSARQASRGHAFSEDTPWQR---ELEESFPYNETPDQLTAIHEVKADMEKEIP 692
>gi|301169996|emb|CBW29600.1| transcription-repair coupling factor [Haemophilus influenzae 10810]
Length = 1146
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|259908777|ref|YP_002649133.1| transcription-repair coupling factor [Erwinia pyrifoliae Ep1/96]
gi|224964399|emb|CAX55908.1| Transcription-repair-coupling factor [Erwinia pyrifoliae Ep1/96]
gi|283478753|emb|CAY74669.1| Transcription-repair-coupling factor [Erwinia pyrifoliae DSM 12163]
Length = 1148
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R G+ +V+ HGVG + E G+K E+ ++++
Sbjct: 455 SRRRQDSRRTINPDVLIRNLAELHPGQPVVHLEHGVGRYIGMTTLETGGIKAEYLMLSYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I ++ WSR Q+ K+
Sbjct: 515 G-DAKLYVPVSSLHLISRYAGGAEENAP--------LHKLGSDAWSRARQKAAEKVR--- 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+A + D++ + + + ++ + +AIN + ++
Sbjct: 563 --DVAAELLDIYAQRAAKTGFAF--KHDKQQYQLFCDSFPFETTVDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|320547719|ref|ZP_08042004.1| transcription-repair coupling factor [Streptococcus equinus ATCC
9812]
gi|320447794|gb|EFW88552.1| transcription-repair coupling factor [Streptococcus equinus ATCC
9812]
Length = 1165
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ + G+ ++ + + +PV + +
Sbjct: 487 ELSKGDYVVHHVHGIGKFLGIETIAIHGVHRDYL-TIQYQGSSTISLPVEQIESLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ ++++ +
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQMKGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + A V + + +I I+ ++
Sbjct: 594 FSPDDDLQR---EFDDDFAYVETEDQLRSIKEIKHDMEEAKP 632
>gi|281490512|ref|YP_003352492.1| transcription-repair coupling factor [Lactococcus lactis subsp.
lactis KF147]
gi|281374330|gb|ADA63863.1| Transcription-repair coupling factor [Lactococcus lactis subsp.
lactis KF147]
Length = 1161
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HG+G ++ EV GM ++ ++ + VPV +
Sbjct: 484 ELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYL-TIQYQNGDTISVPVDHLDLLSKYTA 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E GK+ + R ++ + ++ ++++ ++ +
Sbjct: 543 GE------------GKSPKINKLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKKGFA 590
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +++ + V + + +IN I+ ++ +
Sbjct: 591 FSPD---DTSQEEFDSGFSYVETEDQMRSINEIKHDMELERP 629
>gi|262404233|ref|ZP_06080788.1| transcription-repair coupling factor [Vibrio sp. RC586]
gi|262349265|gb|EEY98403.1| transcription-repair coupling factor [Vibrio sp. RC586]
Length = 1155
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMISE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQPKA 626
>gi|227891598|ref|ZP_04009403.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
11741]
gi|227866745|gb|EEJ74166.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
11741]
Length = 1174
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G ++ EV G ++ +D L +PV + I
Sbjct: 494 TELKKGDYVVHVNHGIGRYMGMQTLEVGGHHHDYM-TILYQDDAKLFIPVSQLDKIQKYV 552
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE K + + ++ + E+V + +++
Sbjct: 553 SSE------------SKTPRVNKLGGSEWAKTKRRVANKIEDIADELVDLYAKREAEKGY 600
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ Y+ + + + I+ ++
Sbjct: 601 AFTPDDSYQ---KEFEDAFPYTETPDQLRSSKEIKQDMEKLKP 640
>gi|89075823|ref|ZP_01162207.1| putative transcription-repair coupling factor [Photobacterium sp.
SKA34]
gi|89048444|gb|EAR54020.1| putative transcription-repair coupling factor [Photobacterium sp.
SKA34]
Length = 1153
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E G+K E +V + L VPV I
Sbjct: 482 ELQVGQPVVHIDHGIGRYQGLQTLEAGGIKTE-YVTLEYQGGAKLYVPVASLHLISSYSG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + G E +K + +V +L ++ E
Sbjct: 541 GAEDTAP--IHKLGG--------------ETWSKARRKAAEKVRDVAAELLDVYAKRELK 584
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + A + + AIN + ++
Sbjct: 585 PGFKFTLDREAYAEFSAGFPYEETYDQALAINAVMSDMCQTK 626
>gi|145642248|ref|ZP_01797814.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
gi|145273053|gb|EDK12933.1| transcription-repair coupling factor [Haemophilus influenzae
22.4-21]
Length = 1160
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 474 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 532
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 533 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 580
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 581 AAELLDVYAQREAKKGFAF---KYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKA 637
>gi|114563569|ref|YP_751082.1| transcription-repair coupling factor [Shewanella frigidimarina
NCIMB 400]
gi|114334862|gb|ABI72244.1| transcription-repair coupling factor [Shewanella frigidimarina
NCIMB 400]
Length = 1178
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 29/186 (15%)
Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
++ Q++R+ +Q + G+ IV+ HGV ++ + G+ E+ +
Sbjct: 477 ISQQRRREKQKQVSTDVLVKNLAELKVGQPIVHLEHGVALYQGLETLDTGGLVAEYLKLE 536
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
L VPV I S T ++ E AK
Sbjct: 537 -YSGGDKLYVPVSSLHLISRYNASGDG----------------NTHLNKLGNETWAKAKK 579
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSE-RQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
+ I +V +L ++ + + + E + + ++ + AI+ + +
Sbjct: 580 KAIERIRDVAAELLDVYARRQARPGDAMSIDEEEYAQFSQGFPFEETVDQESAIHAVLED 639
Query: 169 LSSKSS 174
+ + +
Sbjct: 640 MQAPRA 645
>gi|169347359|ref|ZP_02866297.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552]
gi|169293976|gb|EDS76109.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552]
Length = 1141
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 51/170 (30%), Gaps = 18/170 (10%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K Q G+++V+ +G+G IK EV G+ ++ L +PV +
Sbjct: 471 KVLKDYQELEIGDYVVHDNYGIGQYLGIKTLEVQGVHRDYL-YVAYAGDDTLYIPVEQFN 529
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ RK S + + + K+ + + ++ L
Sbjct: 530 LV--RKYSSSEGKVPKINKLGSSQ--------------WQKVKAKARNKVDDIADKLIEI 573
Query: 126 DSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + + ++ I+ ++
Sbjct: 574 YAARMNQTGYAFPVDNEMQFEFENAFGYELTEDQVRSVKEIKEDMEKPQP 623
>gi|217978360|ref|YP_002362507.1| transcription-repair coupling factor [Methylocella silvestris BL2]
gi|217503736|gb|ACK51145.1| transcription-repair coupling factor [Methylocella silvestris BL2]
Length = 1176
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 55/179 (30%), Gaps = 24/179 (13%)
Query: 3 FQQKRDAMRQGF-------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
+K+ + F G+ +V+ HG+G ++ + G + +
Sbjct: 487 RARKKSRKAKDFLSEVGALAAGDIVVHVDHGIGRFVGLQSIDAGGAPHDCL-ELHYAEGA 545
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L +PV + + E L + G Q+ AK+ L
Sbjct: 546 KLFLPVENLELLSRY---GSEDTEVQLDRLGGGG----------WQKRKAKMRKRILEMA 592
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A +++ ++ + E+ + + + I+ + +++S
Sbjct: 593 AGLIKIAAARFTKEAAKLA---PPENLYDEFCAGFPYDETEDQLTTIDAVLEDMASGRP 648
>gi|291617056|ref|YP_003519798.1| Mfd [Pantoea ananatis LMG 20103]
gi|291152086|gb|ADD76670.1| Mfd [Pantoea ananatis LMG 20103]
gi|327393507|dbj|BAK10929.1| transcription-repair coupling factor Mfd [Pantoea ananatis AJ13355]
Length = 1156
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G++ E+ +
Sbjct: 462 SRRRQDTRRTINPDILIRNLAELHPGQPVVHLEHGVGRYIGLTTLEAGGIQAEYL-MLSY 520
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I ++ WSR Q+ K+
Sbjct: 521 ANDAKLYVPVSSLHLISRYAGGADENAP--------LHKLGSDAWSRARQKAAEKVR--- 569
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+A + D++ + + + + +AIN + ++
Sbjct: 570 --DVAAELLDIYAQRAAKSGYAF--KHDREQYQLFCESFPFETTPDQAQAINAVLSDMCQ 625
Query: 172 KSS 174
+
Sbjct: 626 PLA 628
>gi|161870155|ref|YP_001599325.1| transcription-repair coupling factor [Neisseria meningitidis
053442]
gi|161595708|gb|ABX73368.1| transcription-repair coupling factor [Neisseria meningitidis
053442]
Length = 1371
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 684 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 742
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 743 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 789
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 790 AAELLNLYARRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 846
>gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.]
Length = 1171
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+ +V+ HG+G I + V G +F +I KD L +PV K +
Sbjct: 502 EDLKKGDLVVHNDHGIGQYEGIAKLTVDGSTNDFLLI-LYKDDDRLYLPVDKMNMVFKYM 560
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ RA++ KI E+++
Sbjct: 561 GV-----DEIVPVLDKMGGKAWDRVKERAKKSAEKI-------AGELLKLYATRKVNEGF 608
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + +S E + + + AI+ + ++ + +
Sbjct: 609 AH---KKPDSYFKDFEAEFSYEETPDQLSAIDDVMSDMENNTP 648
>gi|260772487|ref|ZP_05881403.1| transcription-repair coupling factor [Vibrio metschnikovii CIP
69.14]
gi|260611626|gb|EEX36829.1| transcription-repair coupling factor [Vibrio metschnikovii CIP
69.14]
Length = 978
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 28/183 (15%)
Query: 3 FQQKRDAMRQ----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
++K++ + G+ +V+ HG+G ++ E G+ E +V +
Sbjct: 284 QRRKKERKSTNSDAVIRHLAELKPGQPVVHIDHGIGRYLGLQTLEAGGITTE-YVTLEYQ 342
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
++ L VPV I L + G E K
Sbjct: 343 NEAKLYVPVSSLNLISRYSGGAEESAP--LHKLGG--------------ESWVKARKKAA 386
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +V +L ++ E R + + + AIN + ++
Sbjct: 387 EKVRDVAAELLDVYAKRELKPGYRFRLDRDQYATFKATFPFEETDDQAMAINAVLSDMCQ 446
Query: 172 KSS 174
+
Sbjct: 447 AKA 449
>gi|114764341|ref|ZP_01443569.1| transcription-repair coupling factor [Pelagibaca bermudensis
HTCC2601]
gi|114543289|gb|EAU46306.1| transcription-repair coupling factor [Roseovarius sp. HTCC2601]
Length = 1158
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ Q G +V+ HG+G ++ AG E ++ + + L
Sbjct: 467 PKKRRKAENFLTEAQSLTPGNLVVHVDHGIGRYQGMEVISAAGAAHECLLLEYA-EGARL 525
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q A++ +
Sbjct: 526 YLPVENIELLSRY-----GHDEGLLDRLGGGA----------WQAKKARLKERIREMADK 570
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + A + + AI + +++S +
Sbjct: 571 LIRVAAERALRKAPII---DPPPGAWESFCARFPYTETDDQIGAIEDVLEDMTSGNP 624
>gi|258621368|ref|ZP_05716402.1| transcription-repair coupling factor [Vibrio mimicus VM573]
gi|258586756|gb|EEW11471.1| transcription-repair coupling factor [Vibrio mimicus VM573]
Length = 1156
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMISE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQPKA 626
>gi|254786005|ref|YP_003073434.1| transcription-repair coupling factor [Teredinibacter turnerae
T7901]
gi|237683594|gb|ACR10858.1| transcription-repair coupling factor [Teredinibacter turnerae
T7901]
Length = 1157
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +V+ HGVG ++ E G EF V+A+ L VPV I
Sbjct: 486 TELKLDAPVVHLDHGVGRYKGLQTIEHDGQADEFLVLAYAD-DTKLYVPVANLHMISRYS 544
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ + S Q+ K AE++ + ++
Sbjct: 545 GADPALAP------------LHRLGSETWQKAKRKAAEQIRDVAAELLEIYAKRKARQGF 592
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SY + A ++ + + AI + ++ S
Sbjct: 593 SY---DNPKEAYDQFAAGFPFEETPDQQSAIRAVRDDMLSAQP 632
>gi|312172099|emb|CBX80356.1| Transcription-repair-coupling factor [Erwinia amylovora ATCC
BAA-2158]
Length = 1148
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R G+ +V+ HGVG + E G+K E+ ++A+
Sbjct: 455 SRRRQDSRRTINPDVLIRNLAELHPGQPVVHLEHGVGRYIGMTTLETGGIKAEYLMLAYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I ++ WSR Q+ K+
Sbjct: 515 G-DAKLYVPVSSLHLISRYAGGAEENAP--------LHKLGSDAWSRARQKAAEKVR--- 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+A + D++ + + + ++ + +AIN + ++
Sbjct: 563 --DVAAELLDIYAQRAAKTGFAF--KHDKQQYQLFCESFPFETTVDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|300857300|ref|YP_003782284.1| putative transcription-repair coupling factor [Clostridium
ljungdahlii DSM 13528]
gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium
ljungdahlii DSM 13528]
Length = 1173
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+ +V+ HG+G IK+ EV G K ++ + L VPV +
Sbjct: 497 KIKSFTELKPGDFVVHVNHGIGIYKGIKQLEVQGHKKDYL-ELIYDSEDKLYVPVEQLDM 555
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GK+ + + K+ ++V+
Sbjct: 556 VQKYIGSE------------GKSPKVSKLGGSDWAKAKKKVKKSIEEIAEDLVKLYAIRS 603
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ YS+ +++ + E + + I I+ ++ S
Sbjct: 604 TLKGYKYSKDTVWQ---KQFEDEFPYEETPDQLTTIQDIKQDMESDK 647
>gi|170748065|ref|YP_001754325.1| transcription-repair coupling factor [Methylobacterium
radiotolerans JCM 2831]
gi|170654587|gb|ACB23642.1| transcription-repair coupling factor [Methylobacterium
radiotolerans JCM 2831]
Length = 1198
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 58/179 (32%), Gaps = 25/179 (13%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+++ Q + G+ +V+ HG+G +K AG + + +
Sbjct: 508 RQKRKAKRPQDVILEVQALQPGDLVVHADHGIGRFVGLKTIHAAGAPHDCLELQY--TGG 565
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L +PV + + E AL + G A Q AK+ L
Sbjct: 566 LLLLPVENIELLTRY---GSEDSEVALDRLGGGA----------WQARKAKMKRRILEMA 612
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ + + + Q E + + AI+ + +L++
Sbjct: 613 GELIKVAAQRFVRKAPAL---QAPEGLYGEFAARFPFEETEDQANAIDAVLDDLNAGRP 668
>gi|89900125|ref|YP_522596.1| transcription-repair coupling factor [Rhodoferax ferrireducens
T118]
gi|89344862|gb|ABD69065.1| transcription-repair coupling factor [Rhodoferax ferrireducens
T118]
Length = 1175
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 34/191 (17%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGM------KLE 44
T ++++ + G+ +V+ AHG+G + ++ +++
Sbjct: 470 TTRRRKKQEQVSDVEALIKDLSELNIGDPVVHSAHGIGRYRGLINLDLGNRLANGEPEVQ 529
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ DK L VPV + I A E L +
Sbjct: 530 EFLHLEYADKATLYVPVSQLQLISRYTGVAAD--EAPLHKLGSGQ--------------W 573
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAIN 163
K + + +L ++ + + + + AI+
Sbjct: 574 DKAKRKAAEQVRDSAAELLNIYARRALREGHAFRYSAGDYEIFANDFGFEETADQSAAIH 633
Query: 164 LIEVNLSSKSS 174
+ ++ S
Sbjct: 634 AVIQDMISPRP 644
>gi|154507723|ref|ZP_02043365.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC
17982]
gi|153797357|gb|EDN79777.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC
17982]
Length = 1194
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/183 (12%), Positives = 57/183 (31%), Gaps = 26/183 (14%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD----- 51
M ++++ G++IV+ HG+G E+ + + ++ VI +
Sbjct: 502 MPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSRTIGRGDAASTRDYLVIEYAPSKRG 561
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VP I S+ + + G A +T + +
Sbjct: 562 QPADRLFVPTDALDQISKYTGSDEPSLTKM-----GGADWAKTKARAKKAVNE------- 609
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E++R ++ ++ + V + + I+ ++ ++
Sbjct: 610 --VAKELIRLYAVRQQTKGHAFGPDTPWQR---ELEDAFPYVETPDQLVTIDEVKADMEK 664
Query: 172 KSS 174
Sbjct: 665 PVP 667
>gi|292487974|ref|YP_003530851.1| transcription-repair-coupling factor [Erwinia amylovora CFBP1430]
gi|292899191|ref|YP_003538560.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC
49946]
gi|291199039|emb|CBJ46150.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC
49946]
gi|291553398|emb|CBA20443.1| Transcription-repair-coupling factor [Erwinia amylovora CFBP1430]
Length = 1148
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R G+ +V+ HGVG + E G+K E+ ++A+
Sbjct: 455 SRRRQDSRRTINPDVLIRNLAELHPGQPVVHLEHGVGRYIGMTTLETGGIKAEYLMLAYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I ++ WSR Q+ K+
Sbjct: 515 G-DAKLYVPVSSLHLISRYAGGAEENAP--------LHKLGSDAWSRARQKAAEKVR--- 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+A + D++ + + + ++ + +AIN + ++
Sbjct: 563 --DVAAELLDIYAQRAAKTGFAF--KHDKQQYQLFCESFPFETTVDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|68250212|ref|YP_249324.1| transcription-repair coupling factor [Haemophilus influenzae
86-028NP]
gi|68058411|gb|AAX88664.1| transcription-repair coupling factor [Haemophilus influenzae
86-028NP]
Length = 1146
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|255262960|ref|ZP_05342302.1| transcription-repair coupling factor [Thalassiobium sp. R2A62]
gi|255105295|gb|EET47969.1| transcription-repair coupling factor [Thalassiobium sp. R2A62]
Length = 1151
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 55/176 (31%), Gaps = 22/176 (12%)
Query: 2 TFQQKRD---AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+++ + Q G+ +V+ HGVG ++ AG E ++ + ++ L
Sbjct: 462 PRKRRAENFLTETQSLTPGDLVVHVDHGVGRFRGLEVVTAAGAAHECLLLEYA-EQSKLY 520
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+PV + E L + G A Q AK+ +
Sbjct: 521 LPVENIELLSKY-----GHDEGLLDKLGGGA----------WQAKKAKLKERIRQIAERL 565
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + + + + V + + AI+ + ++ +
Sbjct: 566 IRVAAERELRTAPIMTPPDGM---WDSFCARFPYVETEDQLGAISDVIEDMGAGRP 618
>gi|217967893|ref|YP_002353399.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
6724]
gi|217336992|gb|ACK42785.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
6724]
Length = 1059
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 60/168 (35%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ +G+G +K+ +V ++ EF + + L VP+ +
Sbjct: 409 KPKDLYLLKDGDYVVHVNYGIGIFRGLKKLKVDELEKEF-IYIEYANNSFLYVPLEEMHL 467
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I S + SR+ +E K+ E+++ + +
Sbjct: 468 IQRYVSSSPD------------PPQISRLESRQWEETKRKVKESAKEIAEELLKIYAQRE 515
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + + +A+ I+ ++ S
Sbjct: 516 ITKGFAFSPDSPLQ---EELEASFPYIETEDQIKALREIKKDMESTKP 560
>gi|194333600|ref|YP_002015460.1| transcription-repair coupling factor [Prosthecochloris aestuarii
DSM 271]
gi|194311418|gb|ACF45813.1| transcription-repair coupling factor [Prosthecochloris aestuarii
DSM 271]
Length = 1120
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+HIV+ +G+G ++ +V + E V+ L V V +
Sbjct: 409 DLHRLNVGDHIVHEDYGIGIFKALETIQVGNSEQEC-VLVEYDKGDQLYVNVQNIGLLSK 467
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+E + +R+ + W R K+ +E+++ + P
Sbjct: 468 YSAAEGS--------LPSLSRLGSSKWKAR----KDKVKKRLRDIASELIKLYAKRKMTP 515
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + +++ + + +AI ++ ++ S
Sbjct: 516 GFAFGQDSIFQR---EFEASFIFDETPDQLKAIEEVKKDMQSPFP 557
>gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
48]
gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
48]
Length = 1168
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 48/167 (28%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ HG+G +K V L +PV +
Sbjct: 493 AEASSLSQGDLVVHIEHGIGRYEGLKTLSVNDAPHACL-ELQYAADAKLYLPVENIDLL- 550
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R +++ + R+ W R + K+ E+ L + +
Sbjct: 551 TRYGADSDTTQ--------LDRLGSASWQARKAKAKEKLR--------EMADGLIQLAAA 594
Query: 129 PEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + AI+ + +LS
Sbjct: 595 RALKVGQQIDPPSGLYDEFCAQFPYEETEDQLNAIHDVLDDLSKGHP 641
>gi|238917224|ref|YP_002930741.1| hypothetical protein EUBELI_01297 [Eubacterium eligens ATCC 27750]
gi|238872584|gb|ACR72294.1| Hypothetical protein EUBELI_01297 [Eubacterium eligens ATCC 27750]
Length = 165
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 63/163 (38%), Gaps = 5/163 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VY GV + I + G+ +++ + D + + + +R +
Sbjct: 1 MFEIGDKVVYGVVGVCEVENIDTPPIKGISGDYYFLQPVFDSKGIIYSPVDSNKVMIRSI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ---- 128
++ + R + +YD + S D + + ++R L+ ++
Sbjct: 61 MTVKECDKLKERARNCKKDGELSEKVTPMQYDEHMKSQDALKLMHLIRALYVIKNERAKD 120
Query: 129 -PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ ++ ++ +A + E AAV + + E ++ LS
Sbjct: 121 LRKMKSADSRMLLAARKLLYGEFAAVYNQTFDEVAEEMDAFLS 163
>gi|282850657|ref|ZP_06260036.1| transcription-repair coupling factor [Veillonella parvula ATCC
17745]
gi|282580150|gb|EFB85554.1| transcription-repair coupling factor [Veillonella parvula ATCC
17745]
Length = 1098
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 51/173 (29%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + G+++V+ HG+G +K E G+ ++ IA+ L +P
Sbjct: 413 PKKGQEINYFTDLTPGDYVVHNMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPA 471
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ +E M R + +K ++V
Sbjct: 472 NNLDQLQKYIGNEGDV------------PRINKMGGRDWSKVVSKAKKSIDDLADKLVEI 519
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ Q ++ + + +A I+ ++
Sbjct: 520 YAQREITEGFAFLPDQPWQ---QEFEDAFPYEETEDQLQATAEIKESMERPVP 569
>gi|300023171|ref|YP_003755782.1| transcription-repair coupling factor [Hyphomicrobium denitrificans
ATCC 51888]
gi|299524992|gb|ADJ23461.1| transcription-repair coupling factor [Hyphomicrobium denitrificans
ATCC 51888]
Length = 1161
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G+ +V+ HG+G ++ G + + + L +PV +
Sbjct: 484 TEATALSVGDLVVHSDHGIGRFAGLQTITALGAPHDCLELHYAGGD-KLFLPVENIELLS 542
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
A + L + G W R + ++ E+ +L + +
Sbjct: 543 RY---GADEGDAQLDRLGG------VGWQSRKAKLKKRLR--------EIANELIKIAAL 585
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A + V + + +I + +L+S
Sbjct: 586 RALREAPALVPPTGAYDEFVARFPYEETEDQATSIESVLADLASGRP 632
>gi|126698862|ref|YP_001087759.1| putative regulatory protein [Clostridium difficile 630]
gi|255100283|ref|ZP_05329260.1| putative regulatory protein [Clostridium difficile QCD-63q42]
gi|255306222|ref|ZP_05350394.1| putative regulatory protein [Clostridium difficile ATCC 43255]
gi|115250299|emb|CAJ68121.1| Transcriptional regulator, CarD family [Clostridium difficile]
Length = 165
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 75/163 (46%), Gaps = 1/163 (0%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF-VIAFDKDKMCLKVPVGKAIDIGMRK 71
++ GE ++YP G ++ +I +++ +++ + + + +PV A IG+R
Sbjct: 1 MYKIGESVMYPKEGACSVNDIVTKKINHEMQKYYELSVIFNSNLKISIPVLNADRIGIRP 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + V+ ++ + V R + Y K +SGD+ I ++++ L DS +
Sbjct: 61 VMDGNDVDNFIQSINKTDGVWIFDRKERLKLYQDKFHSGDVFEIVKLIKMLMIQDSSKQL 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ A + E+AA S + ++ ++ + +
Sbjct: 121 CSTDKEFLNKAQKFALSELAAAQCKSYTMVLEEMKKHILNSKN 163
>gi|85711280|ref|ZP_01042339.1| Transcription-repair coupling factor, superfamily II helicase
[Idiomarina baltica OS145]
gi|85694781|gb|EAQ32720.1| Transcription-repair coupling factor, superfamily II helicase
[Idiomarina baltica OS145]
Length = 1159
Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/186 (12%), Positives = 55/186 (29%), Gaps = 29/186 (15%)
Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
++ +++R+ + G+ +V+ HGVG + + + EF V
Sbjct: 466 VSQRRRREQKPTQSSDALIRNLAELKIGQPVVHIDHGVGRYQGLTTLDAGNVTTEF-VTI 524
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
+ L VPV + E + + + K
Sbjct: 525 EYAQQSKLYVPVASLDVLSRYSGGEENHA----------------PLHKLGNDSWEKAKK 568
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVN 168
I +V +L ++ + ++ R + + AIN + +
Sbjct: 569 RAAEKIRDVAAELLDVYAKRASNEGYGFTIDADDYQRFADSFPFEETTDQLNAINAVVQD 628
Query: 169 LSSKSS 174
+++
Sbjct: 629 MAAPHP 634
>gi|167755583|ref|ZP_02427710.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402]
gi|167704522|gb|EDS19101.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402]
Length = 1144
Score = 94.5 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 18/170 (10%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K Q G+++V+ HG+G IK EV G ++ L +PV +
Sbjct: 471 KVLKDYQELNIGDYVVHDNHGIGQYLGIKTLEVQGFHKDYL-YVAYAGDDTLYIPVEQFK 529
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I RK S + + G K + + ++ L
Sbjct: 530 MI--RKYSSNEGKVPKINKLGGSQ--------------WQKTKAKARSKVDDIADKLIEI 573
Query: 126 DSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
S +S + R ++ + ++ I+ ++
Sbjct: 574 YSARINQPGYAFPSDSEIQLEFERSFGYELTVDQLRSVEEIKADMEKSQP 623
>gi|257438137|ref|ZP_05613892.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
A2-165]
gi|257199468|gb|EEU97752.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
A2-165]
Length = 1155
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 58/177 (32%), Gaps = 21/177 (11%)
Query: 3 FQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K++ + + G+++V+ +HG+G I+ EV G ++ I + + L
Sbjct: 473 KRRKKNKNALSSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDV-LY 531
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VPV + + + KL + + + A E+
Sbjct: 532 VPVTQLDLLSRYTAPGDEEKVKLAKLGGAE---------------WQRTRAKVKKAAEEM 576
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++L ++ ++ + + + A I+ ++
Sbjct: 577 AQELIELYARRRQAQGYAFPPDGDWQNDFETRFEYDETDDQLHATAEIKQDMEKPYP 633
>gi|237734333|ref|ZP_04564814.1| transcription-repair coupling factor [Mollicutes bacterium D7]
gi|229382563|gb|EEO32654.1| transcription-repair coupling factor [Coprobacillus sp. D7]
Length = 1144
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 18/170 (10%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K Q G+++V+ HG+G IK EV G ++ L +PV +
Sbjct: 471 KVLKDYQELNIGDYVVHDNHGIGQYLGIKTLEVQGFHKDYL-YVAYAGDDTLYIPVEQFK 529
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I RK S + + G K + + ++ L
Sbjct: 530 MI--RKYSSNEGKVPKINKLGGSQ--------------WQKTKAKARSKVDDIADKLIEI 573
Query: 126 DSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
S +S + R ++ + ++ I+ ++
Sbjct: 574 YSARINQPGYAFPSDSEIQLEFERSFGYELTVDQLRSVEEIKADMEKSQP 623
>gi|308176608|ref|YP_003916014.1| transcription-repair-coupling factor [Arthrobacter arilaitensis
Re117]
gi|307744071|emb|CBT75043.1| transcription-repair-coupling factor [Arthrobacter arilaitensis
Re117]
Length = 1204
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 60/176 (34%), Gaps = 16/176 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMCLK 58
+++ + G+ IV+ HG+G E+ ++V G K E+ V+ + K
Sbjct: 506 KRKRNAVDPLSLQAGDFIVHEQHGIGKFVELMARKVNGSGKDAKREYLVVEYASSK---- 561
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
G R + + V G+A M +K ++
Sbjct: 562 -----RGAPGDRLFVPMDQLHMVTRYVGGEAPTLSKMGGSDWSSTKSKARKAVKEIAGDL 616
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + ++ ++ N + A + + + AIN ++ ++ +
Sbjct: 617 IKLYSARMASRGHAFGPDTPWQ---NELEEAFAFIETPDQLTAINEVKSDMEKEIP 669
>gi|148825849|ref|YP_001290602.1| transcription-repair coupling factor [Haemophilus influenzae
PittEE]
gi|148716009|gb|ABQ98219.1| transcription-repair coupling factor [Haemophilus influenzae
PittEE]
Length = 1146
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|213965538|ref|ZP_03393733.1| transcription-repair coupling factor [Corynebacterium amycolatum
SK46]
gi|213951922|gb|EEB63309.1| transcription-repair coupling factor [Corynebacterium amycolatum
SK46]
Length = 1215
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 18/173 (10%), Positives = 59/173 (34%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ + G+++V+ HG+G ++ E+ + + + ++ + L+
Sbjct: 507 PAKRRGRVDPLALKAGDYVVHDTHGIGRFVKLTERTIGTGEDQ-----ARREYVVLEYAP 561
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K + ++ + V G+ M + K E+V+
Sbjct: 562 SKRGGPSDQLYVPMESLDLLSRYVGGEKPTLSKMGGSDWKSTKRKARGAVREIAEELVKL 621
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + + + +AI+ I+ ++
Sbjct: 622 YAERQAAPGHAFAPDTPWQQEME---DNFPFTETEDQLQAIDEIKSDMEKPVP 671
>gi|153837338|ref|ZP_01990005.1| transcription-repair coupling factor [Vibrio parahaemolyticus
AQ3810]
gi|149749369|gb|EDM60142.1| transcription-repair coupling factor [Vibrio parahaemolyticus
AQ3810]
Length = 1153
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVSSLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A +K + +V +L ++ E
Sbjct: 538 GAEETAP--LHKLGGEA--------------WSKARRKAAEKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGFKFALDRGQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 624
>gi|319779214|ref|YP_004130127.1| Transcription-repair coupling factor [Taylorella equigenitalis
MCE9]
gi|317109238|gb|ADU91984.1| Transcription-repair coupling factor [Taylorella equigenitalis
MCE9]
Length = 1158
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ IV+ HG+G + EV G +E I ++ L VPV I
Sbjct: 482 DLSEIQVGDPIVHAQHGIGRYQGLVHLEVNGETVEMLQINYEG-DTKLYVPVSHLHVISR 540
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S+ L + K + + +L +
Sbjct: 541 YSGSDPESAP--LHRLGSGQ--------------WEKACKKAAKQVRDTAAELLNLYALR 584
Query: 130 EKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + + +AI+ + +++S
Sbjct: 585 AMREGYKFKIPLEDYHQFSEGFDFEETPDQQQAIDSVLEDMASDKP 630
>gi|323340106|ref|ZP_08080371.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
25644]
gi|323092483|gb|EFZ35090.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
25644]
Length = 1179
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ EVAG ++ +D L +PV + I
Sbjct: 497 DLKPGDFVVHVNHGIGRFMGMETLEVAGRHQDYM-TIIYRDDAKLFIPVSQLDRIQKYVS 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE GK + S ++ K+ S E+V R +S+ +
Sbjct: 556 SE------------GKVPKVNKLGSSEWEKTKRKVASKLEDIADELVELYSRRESEKGHA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Y+ + + + I++++ +
Sbjct: 604 FPKDDSYQ---KEFEDAFPYTETPDQLRSAKEIKLDMEKEKP 642
>gi|28897749|ref|NP_797354.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
2210633]
gi|260363824|ref|ZP_05776579.1| transcription-repair coupling factor [Vibrio parahaemolyticus
K5030]
gi|260876916|ref|ZP_05889271.1| transcription-repair coupling factor [Vibrio parahaemolyticus
AN-5034]
gi|260897942|ref|ZP_05906438.1| transcription-repair coupling factor [Vibrio parahaemolyticus
Peru-466]
gi|260903477|ref|ZP_05911872.1| transcription-repair coupling factor [Vibrio parahaemolyticus
AQ4037]
gi|28805962|dbj|BAC59238.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
2210633]
gi|308085487|gb|EFO35182.1| transcription-repair coupling factor [Vibrio parahaemolyticus
Peru-466]
gi|308093632|gb|EFO43327.1| transcription-repair coupling factor [Vibrio parahaemolyticus
AN-5034]
gi|308110343|gb|EFO47883.1| transcription-repair coupling factor [Vibrio parahaemolyticus
AQ4037]
gi|308113858|gb|EFO51398.1| transcription-repair coupling factor [Vibrio parahaemolyticus
K5030]
Length = 1153
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVSSLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A +K + +V +L ++ E
Sbjct: 538 GAEETAP--LHKLGGEA--------------WSKARRKAAEKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGFKFALDRGQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 624
>gi|306845910|ref|ZP_07478478.1| transcription-repair coupling factor [Brucella sp. BO1]
gi|306273802|gb|EFM55640.1| transcription-repair coupling factor [Brucella sp. BO1]
Length = 1170
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|148827037|ref|YP_001291790.1| transcription-repair coupling factor [Haemophilus influenzae
PittGG]
gi|148718279|gb|ABQ99406.1| transcription-repair coupling factor [Haemophilus influenzae
PittGG]
Length = 1146
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|293189395|ref|ZP_06608118.1| transcription-repair coupling factor [Actinomyces odontolyticus
F0309]
gi|292821858|gb|EFF80794.1| transcription-repair coupling factor [Actinomyces odontolyticus
F0309]
Length = 767
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 55/183 (30%), Gaps = 26/183 (14%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD----- 51
M ++++ G++IV+ HG+G E+ + + ++ VI +
Sbjct: 75 MPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSRTIGRGDAASTRDYLVIEYAPSKRG 134
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VP I S+ + + M + A+
Sbjct: 135 QPADRLFVPTDALDQISKYTGSDDPSLTK--------------MGGADWAKTKARAKKAV 180
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E++R ++ ++ + V + + I+ ++ ++
Sbjct: 181 NEVAKELIRLYAVRQQTKGHAFGPDTPWQR---ELEDAFPYVETPDQLVTIDEVKADMEK 237
Query: 172 KSS 174
Sbjct: 238 PVP 240
>gi|270261435|ref|ZP_06189708.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
gi|270044919|gb|EFA18010.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
Length = 1159
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G+K E+ +++
Sbjct: 465 SRRRQDNRRTINTDTLIRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILS-Y 523
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A K
Sbjct: 524 SGEDKLYVPVSSLHLISRYAGGADE--NAPLHKLGGDA----------WTRARQKAAERV 571
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ + + + + +AIN + ++
Sbjct: 572 RDVAAELLDIYAQRAAKSGFAFKHNR---EQYQLFCQSFPFETTPDQEQAINAVLSDMCQ 628
Query: 172 KSS 174
+
Sbjct: 629 PLA 631
>gi|41407085|ref|NP_959921.1| hypothetical protein MAP0987 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41395436|gb|AAS03304.1| Mfd [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 1221
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 58/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ +
Sbjct: 505 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTVGGARREYLVLEYASSKRGGGSD 564
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 565 KLYVPMDSLDQLSRY--------------VGGQAPALSKLGGSDWANTKTKARRAVREIA 610
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 611 GELVSLYAKRQASPGHAFSPDTPWQAEME---DAFGYTETVDQLTAITEVKSDMEKPIP 666
>gi|256015355|ref|YP_003105364.1| transcription-repair coupling factor [Brucella microti CCM 4915]
gi|255998015|gb|ACU49702.1| transcription-repair coupling factor [Brucella microti CCM 4915]
Length = 1122
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 450 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 508
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 509 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 555
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 556 SAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 598
>gi|237808985|ref|YP_002893425.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187]
gi|237501246|gb|ACQ93839.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187]
Length = 1150
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG ++ + G+ E+ + + L VPV I
Sbjct: 481 ELTIGQPVVHLDHGVGRYLGLQTIDAGGIAAEYLTLEYAGAD-KLYVPVTSLHLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE + + + K AE++ + ++P +
Sbjct: 540 SENPPLHKL--------------GGETWLKARKKAVEKIRDVAAELLDVYAKRAARPGLA 585
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A ++ + + AIN + ++ +
Sbjct: 586 FRHD---KQAYSKFAAGFPFEETPDQLNAINSVLGDMCQAKA 624
>gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis
HTE831]
gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus
iheyensis HTE831]
Length = 1173
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 65/182 (35%), Gaps = 24/182 (13%)
Query: 1 MTFQQKRDAMR--------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
M ++K+ + Q + G+++V+ HGVG I+ EV+ + ++ +I
Sbjct: 479 MKHKRKQPKVSNAERIKSYQELKIGDYVVHANHGVGKYLGIETLEVSNLHKDYMLIK-YS 537
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + + +K + E L + G + K+ S
Sbjct: 538 GDDKLFVPIDQIDLV--QKFVGSEAKEPKLYKLGGTE----------WTKVKRKVQSSVE 585
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ +++ ++S + + + + I I+ ++ +
Sbjct: 586 DIADDLIKLYAEREAKQGYAFSPDSELQ---HEFEASFPYQETDDQLRCIQEIKEDMEKE 642
Query: 173 SS 174
Sbjct: 643 RP 644
>gi|328473273|gb|EGF44121.1| transcription-repair coupling factor [Vibrio parahaemolyticus
10329]
Length = 1153
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVSSLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A +K + +V +L ++ E
Sbjct: 538 GAEETAP--LHKLGGEA--------------WSKARRKAAEKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGFKFALDRGQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 624
>gi|253688855|ref|YP_003018045.1| transcription-repair coupling factor [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755433|gb|ACT13509.1| transcription-repair coupling factor [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 1150
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 456 SRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYA 515
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A K
Sbjct: 516 GED-KLYVPVSSLHLISRYAGGADE--NAPLHKLGGDA----------WSRARQKAAERV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ ++ + + +AIN + ++
Sbjct: 563 RDVAAELLDIYAQRAAKSGFAFKHD---KTQYQLFCESFPFETTPDQAQAINAVLSDMCQ 619
Query: 172 KSS 174
+
Sbjct: 620 PLA 622
>gi|209885332|ref|YP_002289189.1| transcription-repair coupling factor [Oligotropha carboxidovorans
OM5]
gi|209873528|gb|ACI93324.1| transcription-repair coupling factor [Oligotropha carboxidovorans
OM5]
Length = 1171
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ TG+ +V+ HG+G ++ EV+G + + L +PV +
Sbjct: 494 SEVTSLATGDLVVHVEHGIGRYIGLQTLEVSGAPHDCL-ELHYANNAKLYLPVENIELLS 552
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
A R+ W R + + I E+ DL + ++
Sbjct: 553 RYGAEGAGV---------ELDRLGGGGWQARKAKLKNR--------IREIAGDLIKIAAE 595
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + AIN +L++
Sbjct: 596 RQLHEAPKFPLHQGLYDEFCARFPHDETEDQLTAINASLDDLNAGKP 642
>gi|16273176|ref|NP_439413.1| transcription-repair coupling factor [Haemophilus influenzae Rd
KW20]
gi|260581174|ref|ZP_05848994.1| transcription-repair coupling factor [Haemophilus influenzae RdAW]
gi|1170943|sp|P45128|MFD_HAEIN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|1574188|gb|AAC22905.1| transcription-repair coupling factor (mfd) [Haemophilus influenzae
Rd KW20]
gi|260092202|gb|EEW76145.1| transcription-repair coupling factor [Haemophilus influenzae RdAW]
Length = 1146
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|62317564|ref|YP_223417.1| transcription-repair coupling factor [Brucella abortus bv. 1 str.
9-941]
gi|189022818|ref|YP_001932559.1| Mfd, transcription-repair coupling factor [Brucella abortus S19]
gi|237817111|ref|ZP_04596103.1| transcription-repair coupling factor [Brucella abortus str. 2308 A]
gi|254691061|ref|ZP_05154315.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 6
str. 870]
gi|254698846|ref|ZP_05160674.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 2
str. 86/8/59]
gi|254732293|ref|ZP_05190871.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 4
str. 292]
gi|256256246|ref|ZP_05461782.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 9
str. C68]
gi|260544801|ref|ZP_05820622.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260756658|ref|ZP_05869006.1| transcription-repair coupling factor [Brucella abortus bv. 6 str.
870]
gi|260760089|ref|ZP_05872437.1| transcription-repair coupling factor [Brucella abortus bv. 4 str.
292]
gi|260763327|ref|ZP_05875659.1| transcription-repair coupling factor [Brucella abortus bv. 2 str.
86/8/59]
gi|260882475|ref|ZP_05894089.1| transcription-repair coupling factor [Brucella abortus bv. 9 str.
C68]
gi|297249604|ref|ZP_06933305.1| transcription-repair coupling factor [Brucella abortus bv. 5 str.
B3196]
gi|62197757|gb|AAX76056.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 1
str. 9-941]
gi|189021392|gb|ACD74113.1| Mfd, transcription-repair coupling factor [Brucella abortus S19]
gi|237787924|gb|EEP62140.1| transcription-repair coupling factor [Brucella abortus str. 2308 A]
gi|260098072|gb|EEW81946.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260670407|gb|EEX57347.1| transcription-repair coupling factor [Brucella abortus bv. 4 str.
292]
gi|260673748|gb|EEX60569.1| transcription-repair coupling factor [Brucella abortus bv. 2 str.
86/8/59]
gi|260676766|gb|EEX63587.1| transcription-repair coupling factor [Brucella abortus bv. 6 str.
870]
gi|260872003|gb|EEX79072.1| transcription-repair coupling factor [Brucella abortus bv. 9 str.
C68]
gi|297173473|gb|EFH32837.1| transcription-repair coupling factor [Brucella abortus bv. 5 str.
B3196]
Length = 1170
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|330994820|ref|ZP_08318742.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
gi|329758081|gb|EGG74603.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
Length = 1160
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K+ A G+ +V+ +G+G ++ V + + L
Sbjct: 468 PRRRKKADQFIAEASEIAEGDLVVHQDYGIGRYDGLETIGVGTAPHDCLRL-IYDGNEKL 526
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + AL + G W R AK+ E
Sbjct: 527 FLPVENIELLSR---FGSDQAHVALDRLGG------VSWQSR----KAKMKQRIRDMAGE 573
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + V + + AI + +++S
Sbjct: 574 LIRTAAARALREAPALTPEDGM---WDEFCARFPFVETEDQSRAIADVLDDMASGKP 627
>gi|306841773|ref|ZP_07474459.1| transcription-repair coupling factor [Brucella sp. BO2]
gi|306288178|gb|EFM59565.1| transcription-repair coupling factor [Brucella sp. BO2]
Length = 1170
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|291614691|ref|YP_003524848.1| transcription-repair coupling factor [Sideroxydans lithotrophicus
ES-1]
gi|291584803|gb|ADE12461.1| transcription-repair coupling factor [Sideroxydans lithotrophicus
ES-1]
Length = 1190
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/178 (12%), Positives = 49/178 (27%), Gaps = 23/178 (12%)
Query: 3 FQQKRDAM-----RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+K + + G+ +V+ HG+ + ++ + EF ++ + + L
Sbjct: 509 AARKSNVEGMLRDLSELKPGDPVVHEQHGIARYRGLVNLDLGEGENEFLLLEYAGED-KL 567
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + I A L + A K + + +
Sbjct: 568 YVPVSQLHVISRYSGGAAEAAP--LHKLGSGA--------------WDKAKRRAMQQVRD 611
Query: 118 VVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+L +Q + + AI + ++L S
Sbjct: 612 TAAELLNIYAQRATRKGHAFKLTYHDYEAFAAGFGFEETADQAAAIEAVLLDLQSGKP 669
>gi|291458171|ref|ZP_06597561.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
078 str. F0262]
gi|291419254|gb|EFE92973.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
078 str. F0262]
Length = 1125
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 25/181 (13%)
Query: 1 MTFQQKRD-------AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
+T ++K+ A G+++V+ +HG+G I+ G+ ++ I D
Sbjct: 432 LTKRRKKKKYEGQRIAKLSEISPGDYVVHESHGIGIYRGIERISTDGVTKDYIQIE-YGD 490
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L +P K I SE + L + G K S
Sbjct: 491 GGRLYLPATKLEGIQKYGSSEGAAPK--LNKLNGSD--------------WQKTKSRVRH 534
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSK 172
A+ EV ++L S + + R +S R E + + AI + ++ S+
Sbjct: 535 AVKEVAKELVALYSARQSASGHRFPEDSVWQREFEELFPYEETADQLLAIEETKADMESR 594
Query: 173 S 173
Sbjct: 595 K 595
>gi|256043474|ref|ZP_05446403.1| transcription-repair coupling factor [Brucella melitensis bv. 1
str. Rev.1]
gi|260564670|ref|ZP_05835155.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265989892|ref|ZP_06102449.1| transcription-repair coupling factor [Brucella melitensis bv. 1
str. Rev.1]
gi|260152313|gb|EEW87406.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|263000561|gb|EEZ13251.1| transcription-repair coupling factor [Brucella melitensis bv. 1
str. Rev.1]
Length = 1170
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|145629319|ref|ZP_01785118.1| transcription-repair coupling factor [Haemophilus influenzae
22.1-21]
gi|144978822|gb|EDJ88545.1| transcription-repair coupling factor [Haemophilus influenzae
22.1-21]
Length = 765
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|262171148|ref|ZP_06038826.1| transcription-repair coupling factor [Vibrio mimicus MB-451]
gi|261892224|gb|EEY38210.1| transcription-repair coupling factor [Vibrio mimicus MB-451]
Length = 1156
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMISE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQPKA 626
>gi|170782785|ref|YP_001711119.1| transcription-repair coupling factor [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157355|emb|CAQ02542.1| transcription-repair coupling factor [Clavibacter michiganensis
subsp. sepedonicus]
Length = 1210
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 58/174 (33%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ ++K + G+H+V+ HG+G E+ ++EV+ + + + ++
Sbjct: 504 LATRRKNVVDPLQLKPGDHVVHTTHGIGKFVELTQREVSSGGRDTVKTRREY--LVIEYA 561
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G + ++ + V G+ M K E+V+
Sbjct: 562 PSKRGYPGDKLFVPTDQLDLLSRYVGGEEPSLSKMGGSDWAAAKGKARRAVRDIAVELVK 621
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S+ ++ + + + + I+ ++ ++ S
Sbjct: 622 LYSARMASRGHSFPPDTPWQR---ELEEAFPFMETPDQLTVIDEVKRDMESPIP 672
>gi|145638829|ref|ZP_01794437.1| transcription-repair coupling factor [Haemophilus influenzae
PittII]
gi|145271801|gb|EDK11710.1| transcription-repair coupling factor [Haemophilus influenzae
PittII]
gi|309750812|gb|ADO80796.1| Transcription-repair coupling factor [Haemophilus influenzae R2866]
Length = 1146
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|294853624|ref|ZP_06794296.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026]
gi|294819279|gb|EFG36279.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026]
Length = 1170
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|116493280|ref|YP_805015.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
25745]
gi|116103430|gb|ABJ68573.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
25745]
Length = 1165
Score = 94.5 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+++V+ HG+G + EV G+ ++ K L +PV + +
Sbjct: 493 TELKTGDYVVHVNHGIGKFMGMTTMEVDGVHQDYM-TIQYKGSGQLFIPVTQLNLVQKYV 551
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+E + L + G AK I ++ DL ++ E
Sbjct: 552 AAEGKSPK--LNKLGGSD--------------WAKTKKNVASKIEDIADDLIELYAKREA 595
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + R + + + +I I+ ++ +
Sbjct: 596 EKGFAFKPDDSYQRQFDNDFPYTETPDQLRSIEEIKKDMERERP 639
>gi|313889521|ref|ZP_07823167.1| transcription-repair coupling factor [Streptococcus pseudoporcinus
SPIN 20026]
gi|313122133|gb|EFR45226.1| transcription-repair coupling factor [Streptococcus pseudoporcinus
SPIN 20026]
Length = 1166
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +PV + +
Sbjct: 487 ELVKGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPVEQIESLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ +++R
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLRLYAERSQLKGFQ 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +++ + V + + +I I+ ++ S+
Sbjct: 594 FSPDDELQAS---FDNDFPFVETEDQLRSIQEIKKDMESQRP 632
>gi|295401980|ref|ZP_06811942.1| transcription-repair coupling factor [Geobacillus
thermoglucosidasius C56-YS93]
gi|312109202|ref|YP_003987518.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
gi|294975982|gb|EFG51598.1| transcription-repair coupling factor [Geobacillus
thermoglucosidasius C56-YS93]
gi|311214303|gb|ADP72907.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
Length = 1177
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G+++V+ HG+G I+ E+ G+ ++ I + L VPV + +
Sbjct: 498 SELRVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHI-QYQGSDTLYVPVDQIDQVQKYV 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GK + ++ K+ S ++++ ++
Sbjct: 557 GSE------------GKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREASKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + +I I+ ++ S
Sbjct: 605 AFSPDTEMQR---EFEAAFPYQETEDQLRSIEEIKRDMESDKP 644
>gi|157370240|ref|YP_001478229.1| transcription-repair coupling factor [Serratia proteamaculans 568]
gi|157322004|gb|ABV41101.1| transcription-repair coupling factor [Serratia proteamaculans 568]
Length = 1176
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 58/183 (31%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G+K E+ ++++
Sbjct: 482 SRRRQDNRRTINTDVLIRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYA 541
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A K
Sbjct: 542 GED-KLYVPVSSLHLISRYAGGADE--NAPLHKLGGDA----------WSRARQKAAERV 588
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ + + + + +AIN + ++
Sbjct: 589 RDVAAELLDIYAQRAAKTGFAFKHDR---EQYQLFCQAFPFETTPDQEQAINAVLSDMCQ 645
Query: 172 KSS 174
+
Sbjct: 646 PLA 648
>gi|83269545|ref|YP_418836.1| transcription repair coupling factor [Brucella melitensis biovar
Abortus 2308]
gi|82939819|emb|CAJ12827.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Haem peroxidase:Transcription-repair
coupli [Brucella melitensis biovar Abortus 2308]
Length = 1122
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 450 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 508
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 509 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 555
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 556 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 598
>gi|218768305|ref|YP_002342817.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
gi|121052313|emb|CAM08643.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
Length = 1296
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 609 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTIDLGGETNEMMLLEYAG-EA 667
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 668 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 714
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 715 AAELLNLYARRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 771
>gi|256157728|ref|ZP_05455646.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
gi|256253301|ref|ZP_05458837.1| transcription-repair coupling factor [Brucella ceti B1/94]
gi|261220415|ref|ZP_05934696.1| transcription-repair coupling factor [Brucella ceti B1/94]
gi|265996234|ref|ZP_06108791.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
gi|260918999|gb|EEX85652.1| transcription-repair coupling factor [Brucella ceti B1/94]
gi|262550531|gb|EEZ06692.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
Length = 1170
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|254720434|ref|ZP_05182245.1| transcription-repair coupling factor [Brucella sp. 83/13]
gi|265985454|ref|ZP_06098189.1| transcription-repair coupling factor [Brucella sp. 83/13]
gi|306838989|ref|ZP_07471810.1| transcription-repair coupling factor [Brucella sp. NF 2653]
gi|264664046|gb|EEZ34307.1| transcription-repair coupling factor [Brucella sp. 83/13]
gi|306405895|gb|EFM62153.1| transcription-repair coupling factor [Brucella sp. NF 2653]
Length = 1171
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 499 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 557
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 558 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 604
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 605 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 647
>gi|254695633|ref|ZP_05157461.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
Tulya]
gi|254699816|ref|ZP_05161644.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
gi|261216031|ref|ZP_05930312.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
Tulya]
gi|261750288|ref|ZP_05993997.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
gi|260917638|gb|EEX84499.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
Tulya]
gi|261740041|gb|EEY27967.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
Length = 1170
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|225629075|ref|ZP_03787108.1| transcription-repair coupling factor [Brucella ceti str. Cudo]
gi|254705928|ref|ZP_05167756.1| transcription-repair coupling factor [Brucella pinnipedialis
M163/99/10]
gi|254711152|ref|ZP_05172963.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
gi|254712390|ref|ZP_05174201.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
gi|254715462|ref|ZP_05177273.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
gi|256029533|ref|ZP_05443147.1| transcription-repair coupling factor [Brucella pinnipedialis
M292/94/1]
gi|260167377|ref|ZP_05754188.1| transcription-repair coupling factor [Brucella sp. F5/99]
gi|261217195|ref|ZP_05931476.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
gi|261313356|ref|ZP_05952553.1| transcription-repair coupling factor [Brucella pinnipedialis
M163/99/10]
gi|261318744|ref|ZP_05957941.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
gi|261320066|ref|ZP_05959263.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
gi|261756785|ref|ZP_06000494.1| transcription repair coupling factor [Brucella sp. F5/99]
gi|265986542|ref|ZP_06099099.1| transcription-repair coupling factor [Brucella pinnipedialis
M292/94/1]
gi|225615571|gb|EEH12620.1| transcription-repair coupling factor [Brucella ceti str. Cudo]
gi|260922284|gb|EEX88852.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
gi|261292756|gb|EEX96252.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
gi|261297967|gb|EEY01464.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
gi|261302382|gb|EEY05879.1| transcription-repair coupling factor [Brucella pinnipedialis
M163/99/10]
gi|261736769|gb|EEY24765.1| transcription repair coupling factor [Brucella sp. F5/99]
gi|264658739|gb|EEZ29000.1| transcription-repair coupling factor [Brucella pinnipedialis
M292/94/1]
Length = 1170
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|225686365|ref|YP_002734337.1| transcription-repair coupling factor [Brucella melitensis ATCC
23457]
gi|256262494|ref|ZP_05465026.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2
str. 63/9]
gi|225642470|gb|ACO02383.1| transcription-repair coupling factor [Brucella melitensis ATCC
23457]
gi|263092231|gb|EEZ16528.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2
str. 63/9]
gi|326410736|gb|ADZ67800.1| transcription-repair coupling factor [Brucella melitensis M28]
gi|326554029|gb|ADZ88668.1| transcription-repair coupling factor [Brucella melitensis M5-90]
Length = 1170
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|109898045|ref|YP_661300.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
T6c]
gi|109700326|gb|ABG40246.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
T6c]
Length = 1160
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 23/177 (12%)
Query: 5 QKRDAM-------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++ G+ +V+ HGVG ++ + G+ E+ I + K + L
Sbjct: 472 KRQATDENAVIRNLAELAIGQPVVHLDHGVGRYLGLQTLDAGGITTEYLTIEYAK-EAKL 530
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV I S + L + + WS+ Q+ ++ +A
Sbjct: 531 YVPVSALHLISRY--SGGDLEKAPLHNLGTE------TWSKAKQKAAERVR-----DVAA 577
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ D++ + YS + ++ ++ + +AIN + ++ S ++
Sbjct: 578 QLLDVYARRAAKP-GYSYKIAWDE-YQAFSDSFPFEETLDQQQAINAVIQDMGSSNA 632
>gi|328952684|ref|YP_004370018.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
11109]
gi|328453008|gb|AEB08837.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
11109]
Length = 1168
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 24/179 (13%)
Query: 2 TFQQKRD------AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K + G+ IV+ HGVG + + V +F + +
Sbjct: 468 PSKRKTTRPLQFLTSLTDLKVGDPIVHLDHGVGLYRGLVKLAVGSEINDFLQLEYLGGD- 526
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L +PV + + + L+ + GK+ K A+
Sbjct: 527 RLYLPVDRLHLVQKYMGVDDKIPP--LEKLGGKS--------------WEKTKKRVRQAV 570
Query: 116 AEVVRDLHRTDSQPEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ R+L + + AL + + EAI + +++S
Sbjct: 571 EKIARELVELYAARRVLPGHHFSPPDPALREFEATFDFEETPDQLEAIQDVLEDMASDR 629
>gi|294792288|ref|ZP_06757436.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
gi|294457518|gb|EFG25880.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
Length = 1098
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + G+++V+ HG+G +K E G+ ++ IA+ L +P
Sbjct: 413 PKKGQEINYFTDLTPGDYVVHNMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPA 471
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ +E M R + K ++V
Sbjct: 472 NNLDQLQKYIGNEGDV------------PRINKMGGRDWSKVVTKAKKSIDDLADKLVEI 519
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ Q ++ + + +A I+ ++
Sbjct: 520 YAQREITEGFAFLPDQPWQ---QEFEDAFPYEETEDQLQATAEIKESMERPVP 569
>gi|227015821|gb|ACP17918.1| putative transcription-repair coupling factor [Pseudomonas
nitroreducens]
Length = 1154
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M +++ R G +V+ HGVG + E+ G EF
Sbjct: 462 MQRRRREKTRDGGENVIKNLTELREGAPVVHIDHGVGRYIGLITLEIDGQHAEFL-AMEY 520
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
D+ L VPV I S+ + S Q+ K
Sbjct: 521 ADEAKLYVPVASLHLIARYTGSDDALAP------------LHRLGSETWQKAKRKAAEQV 568
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ R ++ ++ + ++ + + AI + ++ +
Sbjct: 569 RDVAAELLDIYARRAARKGYAFKD---PQADYATFSAGFPFEETPDQQTAIEAVVADMLA 625
Query: 172 KSS 174
+
Sbjct: 626 EKP 628
>gi|284007308|emb|CBA72650.1| transcription-repair coupling factor [Arsenophonus nasoniae]
Length = 1146
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 16/160 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + G++ E+ ++++ + L VPV I
Sbjct: 475 ELRPGQPVVHLEHGVGRYQGLTTLAAGGIQAEYLMLSYAGND-KLYVPVSSLNLISRYSG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S + + + K AE++ + +P +
Sbjct: 534 SSDENAP------------LHKLGNDVWTKAKQKAAEKIRDVAAELLDIHAQRSIKPGFA 581
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ ++ + ++ + +AIN + ++
Sbjct: 582 FKHDKM---QYQLFCQGFPFETTVDQEQAINAVLSDMCQP 618
>gi|161620641|ref|YP_001594527.1| transcription-repair coupling factor [Brucella canis ATCC 23365]
gi|260568134|ref|ZP_05838603.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|161337452|gb|ABX63756.1| transcription-repair coupling factor [Brucella canis ATCC 23365]
gi|260154799|gb|EEW89880.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
Length = 1170
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
L + L + G A Q AK+ L +++ +
Sbjct: 557 RYGL---EGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|326772339|ref|ZP_08231624.1| transcription-repair coupling factor [Actinomyces viscosus C505]
gi|326638472|gb|EGE39373.1| transcription-repair coupling factor [Actinomyces viscosus C505]
Length = 778
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 57/177 (32%), Gaps = 16/177 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMCL 57
+ +R G+ +V+ HGVG E+ + V G E+ V +
Sbjct: 59 ARRTRRSVDPLSLHAGDLVVHAQHGVGRFIELSRRTVGGPRSSATREYLV---------I 109
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+ K G R L +++ K V G + M + +K E
Sbjct: 110 EYAPSKRGQPGDRLLVPTDALDQVTKYVGGDSPALSKMGGADWAKTKSKARKAVREIAGE 169
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+VR + ++S +++ + + + I+ ++ ++
Sbjct: 170 LVRLYAARAATTGHAFSPDTPWQT---ELEEAFPYTETPDQLSTIDEVKADMEKAQP 223
>gi|254702954|ref|ZP_05164782.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
gi|261753561|ref|ZP_05997270.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
gi|261743314|gb|EEY31240.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
Length = 1170
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
L + L + G A Q AK+ L +++ +
Sbjct: 557 RYGL---EGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|254453067|ref|ZP_05066504.1| transcription-repair coupling factor [Octadecabacter antarcticus
238]
gi|198267473|gb|EDY91743.1| transcription-repair coupling factor [Octadecabacter antarcticus
238]
Length = 1154
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +++R Q G+ +V+ HGVG ++ G E ++ + + L
Sbjct: 466 TKRKRRAENFLTETQSLTPGDLVVHVDHGVGRYLGMEVVTALGAAHECLLLEYA-ESSKL 524
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + L + G A Q AK+
Sbjct: 525 YLPVENIELLSRY-----GHEVGLLDKLGGGA----------WQAKKAKLKERIREMAER 569
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + + + + + + AI + NL S
Sbjct: 570 LIRVAAERELRTAPALTPPEDM---WEQFLARFPYAETDDQLRAIEDVLDNLGSGKP 623
>gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum
JW20]
gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum
JW20]
Length = 1178
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 59/173 (34%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K+ ++ G+++V+ HG+G I++ V +K ++ I D L VP
Sbjct: 496 SAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKI-QYSDGDYLYVPT 554
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I SE GK + + A+ E++
Sbjct: 555 NQLDLIQKYIGSE------------GKTPKLSKLGGTDWAKTRARTKESLKELAQELINL 602
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + +++ + + + I I+ ++ S
Sbjct: 603 YAQREMVEGHAFGKDTVWQKQFEDL---FPYQETEDQLRCIEEIKRDMESPRP 652
>gi|163844731|ref|YP_001622386.1| transcription-repair coupling factor [Brucella suis ATCC 23445]
gi|163675454|gb|ABY39564.1| transcription-repair coupling factor [Brucella suis ATCC 23445]
Length = 1170
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
L + L + G A Q AK+ L +++ +
Sbjct: 557 RYGL---EGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|116750898|ref|YP_847585.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans
MPOB]
gi|116699962|gb|ABK19150.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans
MPOB]
Length = 1189
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ Q G+ +V+ HG+G E+ V G++ +F ++ +D L VPV K +
Sbjct: 514 SSFQDLHIGDFVVHVDHGIGVYKELVHLAVRGIESDFLLLE-YQDGDRLYVPVDKLQKVQ 572
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + + G++ L + V +L ++
Sbjct: 573 KYLGL--EGQQPKIDKLGGRS--------------WETAKKKALESAERVAEELLSLYAK 616
Query: 129 PEKSYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ R + + + + + AI+ + +++S+
Sbjct: 617 RQIGEGFRFSPPDSYFQKFEATFSYEETPDQMRAIDDVLDDMASRRP 663
>gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM
2360]
gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM
2360]
gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM
1313]
Length = 1178
Score = 94.5 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 59/173 (34%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K+ ++ G+++V+ HG+G I++ V +K ++ I D L VP
Sbjct: 496 SAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKI-QYSDGDYLYVPT 554
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I SE GK + + A+ E++
Sbjct: 555 NQLDLIQKYIGSE------------GKTPKLSKLGGTDWAKTRARTKESLKELAQELINL 602
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + +++ + + + I I+ ++ S
Sbjct: 603 YAQREMAEGHAFGKDTVWQKQFEDL---FPYQETEDQLRCIEEIKRDMESPRP 652
>gi|319776143|ref|YP_004138631.1| transcription-repair coupling factor [Haemophilus influenzae F3047]
gi|317450734|emb|CBY86954.1| transcription-repair coupling factor [Haemophilus influenzae F3047]
Length = 1146
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLITLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|329123308|ref|ZP_08251874.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC
11116]
gi|327471404|gb|EGF16854.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC
11116]
Length = 1160
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 474 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLITLDTGGIKAEYLLLNYAN-E 532
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 533 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 580
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 581 AAELLDVYAQREAKKGFTF---KYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKA 637
>gi|23500323|ref|NP_699763.1| transcription-repair coupling factor [Brucella suis 1330]
gi|23463936|gb|AAN33768.1| transcription-repair coupling factor [Brucella suis 1330]
Length = 1122
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 450 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 508
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
L + L + G A Q AK+ L +++ +
Sbjct: 509 RYGL---EGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 555
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 556 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 598
>gi|330996173|ref|ZP_08320063.1| transcription-repair coupling factor [Paraprevotella xylaniphila
YIT 11841]
gi|329573677|gb|EGG55268.1| transcription-repair coupling factor [Paraprevotella xylaniphila
YIT 11841]
Length = 1133
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q F G+++V+ HGVG + G E I ++ + V + +
Sbjct: 442 ELQEFNIGDYVVHVDHGVGKFGGLVRIPNGGTMQEVIKI-IYQNDDVVFVSIHSLHKVSK 500
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ E G+ + + + + + ++++ +
Sbjct: 501 YRGKE------------GEPPRLNKLGTGAWERLKERTKTKIKDIARDLIKLYSLRRQEK 548
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++
Sbjct: 549 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQAVKADMERDRP 590
>gi|229816037|ref|ZP_04446358.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
13280]
gi|229808351|gb|EEP44132.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
13280]
Length = 1192
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 18/162 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+++V+ HG+ +EI QEV G + ++F++ + L VP+ + I
Sbjct: 510 FKPGDYVVHATHGIALFSEIVRQEVGGKERDYFMLEYAGGD-KLYVPLEQVDRITRY--V 566
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
L + ++ + + ++ DL ++
Sbjct: 567 GPDGDNPRLTRLNTAD--------------WSRATTKARKSAKKLAFDLVDLYTRRSSIT 612
Query: 134 SERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+SA M + + +AI I+ ++ S
Sbjct: 613 GFAFGPDSASQIEMEESFPYDETRDQLDAIADIKSDMESTKP 654
>gi|192291316|ref|YP_001991921.1| transcription-repair coupling factor [Rhodopseudomonas palustris
TIE-1]
gi|192285065|gb|ACF01446.1| transcription-repair coupling factor [Rhodopseudomonas palustris
TIE-1]
Length = 1172
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ TG+ +V+ HG+G ++ EV G + V + L +PV +
Sbjct: 495 SEVTSLSTGDIVVHVEHGIGRFVGLQTLEVGGAPHDC-VELHYANDTKLFLPVENIELLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
++ + W R + + I ++ +L + ++
Sbjct: 554 RYGSDGTSV---------ELDKLGGSGWQARKAKLKNR--------IRQIAGELIKVAAE 596
Query: 129 PEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + AIN +L +
Sbjct: 597 RHLREAPKLPIQPQLYDEFCARFPYDETEDQLAAINAALGDLEKGTP 643
>gi|39935729|ref|NP_948005.1| transcription-repair coupling factor [Rhodopseudomonas palustris
CGA009]
gi|39649582|emb|CAE28104.1| transcription repair coupling factor [Rhodopseudomonas palustris
CGA009]
Length = 1172
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ TG+ +V+ HG+G ++ EV G + V + L +PV +
Sbjct: 495 SEVTSLSTGDIVVHVEHGIGRFVGLQTLEVGGAPHDC-VELHYANDTKLFLPVENIELLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
++ + W R + + I ++ +L + ++
Sbjct: 554 RYGSDGTSV---------ELDKLGGSGWQARKAKLKNR--------IRQIAGELIKVAAE 596
Query: 129 PEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + AIN +L +
Sbjct: 597 RHLREAPKLPIQPQLYDEFCARFPYDETEDQLAAINAALGDLEKGTP 643
>gi|148255539|ref|YP_001240124.1| transcription repair coupling factor [Bradyrhizobium sp. BTAi1]
gi|146407712|gb|ABQ36218.1| transcription-repair coupling factor [Bradyrhizobium sp. BTAi1]
Length = 1171
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 53/167 (31%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G ++ EVAG + + + + L +PV +
Sbjct: 494 SEVTSLAIGDIVVHVDHGIGRFVGLQTLEVAGAPHDCLELRYAG-ETKLYLPVENIELLS 552
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ ++ + W R + + I E+ +L + ++
Sbjct: 553 RYGSDQTSV---------ELDKLGGSGWQTRKAKLKNR--------IREMAGELIKIAAE 595
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + + + AI +L +
Sbjct: 596 RMLHEAPKLPVQAGLYDEFCARFPYDETEDQLTAIQATLADLEAGRP 642
>gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
Length = 1147
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 22/177 (12%)
Query: 3 FQQKRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++ + F+ G+++V+ HG+ T I QEVAG + ++F++ + L
Sbjct: 469 KKRSKRIDPTTVTFPFKPGDYVVHATHGIAHFTAIVRQEVAGRERDYFLLEYAN-DDKLY 527
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VP+ + I L + A R R + ++
Sbjct: 528 VPLEQVDRITRY--VGPDGNNPRLTRL-NTADWSRATNKARK-------------SAKKL 571
Query: 119 VRDLHRTDSQPEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL ++ ++ A M + + A+ I++++ ++
Sbjct: 572 AFDLVDLYTRRASVPGYAFSLDTPAQEEMESSFPYQLTPDQESAVADIKLDMEARKP 628
>gi|227497779|ref|ZP_03927965.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM
15434]
gi|226832806|gb|EEH65189.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM
15434]
Length = 1250
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 9/175 (5%)
Query: 1 MTFQQ-KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
M ++ +R +G+ +V+ HGVG E+ + V A ++ + ++
Sbjct: 531 MPARRSRRSVDPLSLHSGDLVVHAQHGVGRFVELMRRNVG-----TGKNAATREYVVIEY 585
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
K G R L +++ K V G M + +K E+V
Sbjct: 586 APSKRGQPGDRLLVPTDALDQVSKYVGGDNPTLNKMGGADWAKTKSKARKAVREIAGELV 645
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R + +++ ++S + + + I+ ++ ++
Sbjct: 646 RLYAARSATSGHAFAPDTPWQS---ELEESFPYTETADQLATIDEVKSDMEKAQP 697
>gi|296111607|ref|YP_003621989.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
11154]
gi|295833139|gb|ADG41020.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
11154]
Length = 1174
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 21/179 (11%)
Query: 2 TFQQKRDAMRQ-----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
Q+K + + G+++V+ HG+G ++ G K ++ +
Sbjct: 474 PRQRKINNAERLKSYNELNVGDYVVHVNHGIGRYEGLQTMTSDGGKQDYL-SIAYQKNAK 532
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
+ +PV + I + L + G AK I
Sbjct: 533 IFIPVTQLNLIQKYIGASDAAKAPKLNQLGGTQ--------------WAKTKRQVATKIE 578
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ DL +Q E + + + +I I++++
Sbjct: 579 DIADDLIALYAQREAQQGYAYPPDDTDQLKFDTAFGYPETPDQIRSIEEIKLDMQKSRP 637
>gi|271500156|ref|YP_003333181.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
gi|270343711|gb|ACZ76476.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
Length = 1150
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 456 SRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYA 515
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A K
Sbjct: 516 GED-KLYVPVSSLHLISRYAGGAEESAP--LHKLGGDA----------WTRARQKAAEKV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + + ++ + + + + +AIN + ++
Sbjct: 563 RDVAAELLDVYAQRAAHTGFAFKHDR---EQYQLFCQGFPFDTTPDQAQAINAVLSDMCR 619
Query: 172 KSS 174
+
Sbjct: 620 PLA 622
>gi|118471657|ref|YP_889663.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
MC2 155]
gi|118172944|gb|ABK73840.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
MC2 155]
Length = 1215
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-----M 55
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 502 LAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGGARREYLVLEYASSKRGGGTD 561
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 562 KLYVPMDSLDQLSRY--------------VGGEAPSLSRLGGSDWANTKTKARRAVREIA 607
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+E+V + S P ++ +++ + +I + AI ++ ++
Sbjct: 608 SELVALYAKRQSAPGHAFGPDTPWQAEME---DAFGFTETIDQLTAIQEVKSDMEKPVP 663
>gi|260597486|ref|YP_003210057.1| transcription-repair coupling factor [Cronobacter turicensis z3032]
gi|260216663|emb|CBA29998.1| Transcription-repair-coupling factor [Cronobacter turicensis z3032]
Length = 1167
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++++ R R G+ +V+ HGVG + E G+ E+ ++ +
Sbjct: 474 TRRRQESRRTINPDTLIRNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGITAEYLMLTYA 533
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I + S + K
Sbjct: 534 G-DAKLYVPVSSLHLISRYAGGAEENAP------------LHKLGSDAWSKARQKAAEKV 580
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ + + + +AIN + ++
Sbjct: 581 RDVAAELLDIYAQRAAKSGFAFKHD---KEQYQLFCEGFPFETTPDQAQAINAVLSDMCQ 637
Query: 172 KSS 174
+
Sbjct: 638 PLA 640
>gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
Length = 1189
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 55/175 (31%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R + G+ +V+ HG+G +++ + G + ++ V+ + L+V
Sbjct: 482 RRRKAASRTVDPNKMQPGDFVVHRNHGIGRFLRLEKLAIGGEERDYLVVQYA--DGLLRV 539
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + M + + ++V
Sbjct: 540 AADQLGSLGRYRATS------------DSPPDLNRMGGTAWSKAKERARKAVRRVALDLV 587
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P + ++ N + + + +AI ++ ++
Sbjct: 588 KLYAERHKTPGFPFPPDGPWQ---NELEDSFPYEPTPDQVKAIADVKRDMEQAQP 639
>gi|303230285|ref|ZP_07317052.1| transcription-repair coupling factor [Veillonella atypica
ACS-134-V-Col7a]
gi|302515068|gb|EFL57043.1| transcription-repair coupling factor [Veillonella atypica
ACS-134-V-Col7a]
Length = 1096
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 19/173 (10%), Positives = 52/173 (30%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + G+++V+ HG+G +K E G+ ++ IA+ L +P
Sbjct: 413 PKKGQEINYFTDLSVGDYVVHSMHGIGKYVGLKTIETEGIHRDYIEIAYAGTD-RLYLPA 471
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ +E M ++ K ++V
Sbjct: 472 SNLDQLQKYIGNEGDV------------PRIHKMGGSDWRKAVTKAQKSIDDLADKLVEL 519
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ Q ++ + + + +A I+ ++ +
Sbjct: 520 YAKREITEGFAFLPDQPWQ---QEFEDDFPYEETEDQLQATREIKESMERPTP 569
>gi|229824545|ref|ZP_04450614.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
gi|229785916|gb|EEP22030.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
Length = 1183
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++V+ HG+G + E+ G+ + + +D + +PV + +
Sbjct: 497 SELEVGDYVVHVHHGIGQFRGMDTIEMNGIHKD-LLSVVYQDDSRILIPVDQIHLLQKYV 555
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SEA K + + K+ + E++ + + +
Sbjct: 556 ASEA------------KTPKLNKLGGTEWAKTKRKVAAKIEDIADELIALYAKREREVGY 603
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +S A V + + + I+ ++
Sbjct: 604 AFGPDTPEQS---EFESAFAYVETEDQLRSAIEIKADMEKSKP 643
>gi|119897964|ref|YP_933177.1| transcription-repair coupling factor [Azoarcus sp. BH72]
gi|119670377|emb|CAL94290.1| transcription-repair coupling factor [Azoarcus sp. BH72]
Length = 1150
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ +HG+G + + EF + L VPV + I
Sbjct: 480 DLSELKLGDPVVHVSHGIGRYLGLIHMNLGEGDTEFLHLE-YNGGDKLYVPVSQLHVITR 538
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ V+ L + K + + + +L +Q
Sbjct: 539 YAGADPEAVD--LHRLGSGQ--------------WEKAKKKAAMQVRDTAAELLALYAQR 582
Query: 130 EKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R ++ L + + AI+ + ++ S
Sbjct: 583 AARPGHRFDFKQHDLEAFAEAFGFETTPDQQAAIDAVVGDMKSGRP 628
>gi|332522484|ref|ZP_08398736.1| transcription-repair coupling factor [Streptococcus porcinus str.
Jelinkova 176]
gi|332313748|gb|EGJ26733.1| transcription-repair coupling factor [Streptococcus porcinus str.
Jelinkova 176]
Length = 1166
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +PV + +
Sbjct: 487 ELVKGDYVVHNVHGIGRFLGIETIKLQGIHRD-YVTIQYQNSDRISLPVEQIESLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ +++R
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLRLYAERSQLKGFQ 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + V + + +I I+ ++ S+
Sbjct: 594 FSPDDELQ---ESFDNDFPFVETEDQLRSIQEIKKDMESQLP 632
>gi|83645461|ref|YP_433896.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
gi|83633504|gb|ABC29471.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
Length = 1149
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ +V+ HG+G ++ EV G K EF V+ + + L VPV I
Sbjct: 474 QNLTELKLNAPVVHIDHGIGRYKGLQSLEVDGQKQEFLVLEYAN-EAKLYVPVSSLHLIS 532
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ K + + R + + AE++ + +
Sbjct: 533 RYAG------------LDDKLAPINKLGTDRWSAAKRQAAEKIKDSAAELLEIYAKRELH 580
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++
Sbjct: 581 TGYACP---PPDEHYRAFSAAFPFEETPDQATAINAVLQDMMKPRP 623
>gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
27405]
gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
27405]
Length = 1178
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 59/173 (34%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K+ ++ G+++V+ HG+G I++ V +K ++ I D L VP
Sbjct: 496 SAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKI-QYSDGDYLYVPT 554
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I SE GK + + A+ E++
Sbjct: 555 NQLDLIQKYIGSE------------GKTPKLSKLGGTDWAKTRARTKESLKELAQELINL 602
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + +++ + + + I I+ ++ S
Sbjct: 603 YAQREMAEGHAFGKDTVWQKQFEDL---FPYQETEDQLRCIEEIKRDMESPRP 652
>gi|269926461|ref|YP_003323084.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
BAA-798]
gi|269790121|gb|ACZ42262.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
BAA-798]
Length = 1150
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 49/173 (28%), Gaps = 18/173 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + + G ++V+ HGV + +G + E+ V+ + L VPV
Sbjct: 468 PRKAPQRVFLADLQPGSYVVHVDHGVAKYVGNVMRGSSGAEREYLVLEYAGGD-RLYVPV 526
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + G + + + E+++
Sbjct: 527 DQIDRISPY--------------IGGGEPALSRLGTADWARTKRRAKKAADQLAKELLQL 572
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S+S V + + AI ++ ++ S
Sbjct: 573 YAAREIAKGHSFSPDNELH---KEFESAFPYVETDDQLAAIEDVKADMESPKP 622
>gi|83953596|ref|ZP_00962317.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1]
gi|83841541|gb|EAP80710.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1]
Length = 1162
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R Q G+ +V+ HGVG ++ AG E ++ + + L
Sbjct: 468 PKRKRRAENFLTETQSLSPGDLVVHVDHGVGRYLGMEVVTAAGAAHECLLLEYA-ESSKL 526
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+ +
Sbjct: 527 YLPVENIELLSRY-----GHDEGLLDKLGGGA----------WQSKKAKLKERIREMADK 571
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + AI+ + +L+S +
Sbjct: 572 LIRIAAERALRKAPVMDPPPGM---WDAFAARFPYTETDDQLNAISDVLDDLTSGNP 625
>gi|153854148|ref|ZP_01995456.1| hypothetical protein DORLON_01447 [Dorea longicatena DSM 13814]
gi|149753197|gb|EDM63128.1| hypothetical protein DORLON_01447 [Dorea longicatena DSM 13814]
Length = 177
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 60/172 (34%), Gaps = 5/172 (2%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ + F+ G+++ + GV + I + ++ E++ + D
Sbjct: 6 EQEAEMFKIGDYVAHYKEGVCEVVNIGKIDMGSSDKEYYTLKPVYDAGGTVYTPVDNKRD 65
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
+RKL E +K + + T +R Y + +++ + +
Sbjct: 66 QIRKLITKEEAENLIKEMPKIDIIGVTNEKQREGMYKNALLHNQCREWISLIKTSYGRNK 125
Query: 128 QPEKSYS-----ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + SA + E+A V I + ++ +L ++ +
Sbjct: 126 KRLLAGKKTINVDERYMSSAEKFLYGELAVVMEIPRDKVSGYVKEHLDAELA 177
>gi|86606417|ref|YP_475180.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
gi|86554959|gb|ABC99917.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
Length = 1156
Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 60/177 (33%), Gaps = 23/177 (12%)
Query: 3 FQQKRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ + RQ + G+ +V+ AHG+G ++ + G E+ VI + L+
Sbjct: 469 RKRRQASSRQVDPNLLKPGDFVVHKAHGIGQFLRLESLTIGGETREYLVIQY--SDGLLR 526
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + S AL + G K ++ +V
Sbjct: 527 VAADQVNSLSRYRASSDGPP--ALHKMSGST--------------WEKTKQKVKKSLKKV 570
Query: 119 VRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL + ++ + +S + + A+ I+ ++ S
Sbjct: 571 AFDLLQLYAKRAEQEGYAFPPDSPWQQEFEESFPYPLTPDQIRAVQEIKRDMESPRP 627
>gi|325130353|gb|EGC53119.1| transcription-repair coupling factor [Neisseria meningitidis
OX99.30304]
Length = 1292
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 605 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAG-EA 663
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 664 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 710
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 711 AAELLNLYARRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 767
>gi|229846840|ref|ZP_04466947.1| transcription-repair coupling factor [Haemophilus influenzae
7P49H1]
gi|229810329|gb|EEP46048.1| transcription-repair coupling factor [Haemophilus influenzae
7P49H1]
Length = 1146
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLITLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
25986]
gi|133775801|gb|EBA39621.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
25986]
Length = 1210
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 18/174 (10%)
Query: 3 FQQKRDAMRQGF--RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
++K D + F + G+++V+ HG+ +EI QEV G + ++F++ + L VP
Sbjct: 519 SRRKVDITQITFPFKPGDYVVHATHGIALFSEIARQEVGGKERDYFLLEYADGD-KLYVP 577
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ + I ++ A R R + +A +
Sbjct: 578 LEQVDRITRYVG---PDGDKPRLTRLNTADWTRATNKARK----------NAKKLAFDLV 624
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL+ S E M + + EAI I+ ++ +
Sbjct: 625 DLYTRRSSITGIACPPDTPEQIE--MEESFPYDETRDQLEAIADIKADMEAPKP 676
>gi|156934399|ref|YP_001438315.1| transcription-repair coupling factor [Cronobacter sakazakii ATCC
BAA-894]
gi|156532653|gb|ABU77479.1| hypothetical protein ESA_02230 [Cronobacter sakazakii ATCC BAA-894]
Length = 1148
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 56/183 (30%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++++ R R G+ +V+ HGVG + E G+ E+ +
Sbjct: 455 TRRRQESRRTINPDTLIRNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGITAEYL-MLTY 513
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A + K
Sbjct: 514 ANDAKLYVPVSSLHLISRYAGGAEE--NAPLHKLGGDA----------WSKARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAAKSGFAFKHD---KEQYQLFCEGFPFETTPDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|145636878|ref|ZP_01792543.1| transcription-repair coupling factor [Haemophilus influenzae
PittHH]
gi|145269959|gb|EDK09897.1| transcription-repair coupling factor [Haemophilus influenzae
PittHH]
Length = 878
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 474 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLITLDTGGIKAEYLLLNYAN-E 532
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 533 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 580
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 581 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 637
>gi|326798757|ref|YP_004316576.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
gi|326549521|gb|ADZ77906.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
Length = 1112
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 54/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ + G++I + HG+G +++ EV G E + + + + L V + I
Sbjct: 432 ELRDLKPGDYITHIDHGIGKYAGLEKVEVNGKMQEMIRLVYADNDL-LYVNINSLNRISK 490
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
G + + + ++++ + +Q
Sbjct: 491 YTG------------KDGTVPKMNKLGTDTWDKLKRTTKKKVKDIARDLIKLYAQRKAQT 538
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S ++ + ++ + +A N ++ ++ +
Sbjct: 539 GNAFSPDTYLQT---ELEASFIYEDTPDQEKATNDVKKDMEAPHP 580
>gi|92117582|ref|YP_577311.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14]
gi|91800476|gb|ABE62851.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14]
Length = 1173
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G T ++ EV G + + + + L +PV +
Sbjct: 496 SEATSLAAGDLVVHVEHGIGRFTGLQTLEVGGAPHDCLELRYAN-ETKLFLPVENIELLS 554
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G + W R + + I E+ +L + +
Sbjct: 555 RY---GSDHANVELDRLGG------SGWQARKAKLKNR--------IREIAGELIKIAAA 597
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +S + + + AI+ +L S
Sbjct: 598 RHLHEAPKMPVQSGLYDEFCARFPYEETEDQLGAIHASLKDLESGRP 644
>gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101]
Length = 1185
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 56/175 (32%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G ++++ ++G ++ V+ + L+V
Sbjct: 478 RRRKAASRTVDPNKMRPGDFVVHRNHGIGKFIKLEKLAISGESRDYLVVQYA--DGLLRV 535
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + + M + + ++V
Sbjct: 536 AADQLGSLGRYRATT------------EQPPDLNRMGGTAWSKAKERARKAVRKVALDLV 583
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++S + + + +AI ++ ++
Sbjct: 584 KLYAERHQAAGFCFPADGPWQS---ELEESFPYEPTPDQLKAIADVKRDMEKPQP 635
>gi|194337173|ref|YP_002018967.1| transcription-repair coupling factor [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309650|gb|ACF44350.1| transcription-repair coupling factor [Pelodictyon
phaeoclathratiforme BU-1]
Length = 1103
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 16/176 (9%), Positives = 55/176 (31%), Gaps = 21/176 (11%)
Query: 4 QQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ Q + G+++V+ +G+G ++ + E ++ + L
Sbjct: 393 RKRKIRGISLKDLQKLKVGDYVVHEDYGIGIFRSLETITAGNSEQECVLVEYAGGD-KLF 451
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + SE+ + S + K+ +
Sbjct: 452 VNIQNIRLLSKYTASESSL------------PALSKLGSSKWAAKKDKVRKQLRDIAINL 499
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Q ++ +Y + + + +AI+ ++ ++
Sbjct: 500 IKVYAQRKMQIGFGFAPDSIY---MREFEASFIFDETPDQLKAIHDVKKDMQEPHP 552
>gi|307131510|ref|YP_003883526.1| transcription-repair coupling factor [Dickeya dadantii 3937]
gi|306529039|gb|ADM98969.1| transcription-repair coupling factor [Dickeya dadantii 3937]
Length = 1149
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 59/183 (32%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R R G+ +V+ HGVG + + E G+K E+ ++ +
Sbjct: 455 SRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYSGLTTLEAGGIKAEYLILHYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A K
Sbjct: 515 GED-KLYVPVSSLHLISRYAGGAEDSAP--LHKLGGDA----------WTRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + + ++ + + + + +AIN + ++
Sbjct: 562 RDVAAELLDVYAQRAAHTGFAFKHDR---EQYQLFCQGFPFDTTPDQAQAINAVLSDMCR 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|76797973|ref|ZP_00780232.1| transcription-repair coupling factor [Streptococcus agalactiae
18RS21]
gi|76586653|gb|EAO63152.1| transcription-repair coupling factor [Streptococcus agalactiae
18RS21]
Length = 727
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HGVG I+ E+ G+ ++ ++ + +PV + +
Sbjct: 49 ELSVGDYVVHNVHGVGKFLGIETIEIQGIHRDYL-TIQYQNADRISIPVEQIELLTKYVS 107
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK T+ R ++ ++ ++++ +
Sbjct: 108 A------------DGKEPKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYAERSQLQGFA 155
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + N + A V + + +I I+ ++
Sbjct: 156 FSPDDNMQ---NDFDNDFAYVETEDQLRSIKEIKQDMEGNRP 194
>gi|229845348|ref|ZP_04465480.1| transcription-repair coupling factor [Haemophilus influenzae
6P18H1]
gi|229811801|gb|EEP47498.1| transcription-repair coupling factor [Haemophilus influenzae
6P18H1]
Length = 1146
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLITLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|145634410|ref|ZP_01790120.1| transcription-repair coupling factor [Haemophilus influenzae
PittAA]
gi|145268390|gb|EDK08384.1| transcription-repair coupling factor [Haemophilus influenzae
PittAA]
Length = 1146
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLITLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|145633284|ref|ZP_01789015.1| transcription-repair coupling factor [Haemophilus influenzae 3655]
gi|144986130|gb|EDJ92720.1| transcription-repair coupling factor [Haemophilus influenzae 3655]
Length = 1146
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLITLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|88705083|ref|ZP_01102795.1| transcription-repair coupling factor [Congregibacter litoralis
KT71]
gi|88700778|gb|EAQ97885.1| transcription-repair coupling factor [Congregibacter litoralis
KT71]
Length = 1164
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 16/160 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G +V+ HG+G + EV G EF + + L VPV I
Sbjct: 486 DLNELREGSPVVHAEHGIGRYMGLTHLEVDGADAEFLTLEYADQ-SKLYVPVSSLQLISR 544
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S+ + S + ++ K A+++ R +++
Sbjct: 545 YAGSDPEHAP------------LHRLGSEQWEKAQRKAREKANDVAAQLLEVYARREARE 592
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
++ E + + + AI+ +E ++
Sbjct: 593 GVQFTS---PEEDYAKFAAGFPFEETPDQAAAIDAVEADM 629
>gi|254805085|ref|YP_003083306.1| transcription-repair coupling factor [Neisseria meningitidis
alpha14]
gi|254668627|emb|CBA06236.1| transcription-repair coupling factor [Neisseria meningitidis
alpha14]
Length = 1375
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 688 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAG-EA 746
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 747 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 793
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 794 AAELLNLYARRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 850
>gi|304391611|ref|ZP_07373553.1| transcription-repair coupling factor [Ahrensia sp. R2A130]
gi|303295840|gb|EFL90198.1| transcription-repair coupling factor [Ahrensia sp. R2A130]
Length = 1169
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 50/176 (28%), Gaps = 22/176 (12%)
Query: 3 FQQKRD---AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K G+ +V+ HG+ + E G + ++ L +
Sbjct: 488 SKRKGSEVLQEISSLSAGDVVVHVDHGIARFHGLVTIEAMGAPHDCL-ELRYHNEDKLFL 546
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV + S+ L + G + I E+
Sbjct: 547 PVENIELLSRYGNSDTEVQ---LDRLGG--------------ANWQARKAKLKKRILEMA 589
Query: 120 RDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + + ++ QL + + + + AI+ + +L+S
Sbjct: 590 GQLIAIAAARQLKKADPIQLPDGVYGEFAAKFPYEETDDQLNAIDSVFADLASGQP 645
>gi|254459943|ref|ZP_05073359.1| transcription-repair coupling factor [Rhodobacterales bacterium
HTCC2083]
gi|206676532|gb|EDZ41019.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
HTCC2083]
Length = 1150
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 51/177 (28%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K+ Q G+ +V+ HG+G ++ AG E ++ + + L
Sbjct: 460 AKKRKKAANFLTETQSLNPGDLVVHVDHGIGRYQGLEVITAAGAAHECIMLDYA-ENARL 518
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+ +
Sbjct: 519 YLPVENIELLSKY-----GHEEGLLDRLGGGA----------WQSKKAKLKERIREMADK 563
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + AI + ++ S
Sbjct: 564 LIRVAAERALRRAPIMEPPPGM---WDAFSARFPYQETDDQLGAIGDVLADMGSGQP 617
>gi|289166915|ref|YP_003445182.1| transcription-repair coupling factor [Streptococcus mitis B6]
gi|288906480|emb|CBJ21310.1| transcription-repair coupling factor [Streptococcus mitis B6]
Length = 1169
Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V + + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQSGDKISIPVEQIHLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGYA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A V + + +I I+ ++ S
Sbjct: 595 FSADDEDQHA---FDDAFPYVETDDQLRSIEEIKRDMQSSQP 633
>gi|269215535|ref|ZP_06159389.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
gi|269131022|gb|EEZ62097.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
Length = 1150
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+++V+ AHGV + Q+V G ++ + + + L VPV + I
Sbjct: 485 FKPGDYVVHAAHGVAFFRGLVRQDVGGTMRDYLQLEYA-ENDKLFVPVEQLDRITRYVGP 543
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
E G + + + +K + ++V R S P Y
Sbjct: 544 E------------GSSPRLTRLNTSDWSRAMSKARASTKQLAFDLVDVYTRRSSVPGFRY 591
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S ++ + + + AI ++ ++ S
Sbjct: 592 SPDNPWQKEME---DAFPYAETPDQLSAIAEVKADMQSSRP 629
>gi|309972993|gb|ADO96194.1| Transcription-repair coupling factor [Haemophilus influenzae R2846]
Length = 1146
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLITLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|251789258|ref|YP_003003979.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
gi|247537879|gb|ACT06500.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
Length = 1150
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 456 SRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYA 515
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G A K
Sbjct: 516 GED-KLYVPVSSLHLISRYAGGAEDSAP--LHKLGGDA----------WTRARQKAAEKV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + + ++ + + + + +AIN + ++
Sbjct: 563 RDVAAELLDVYAQRAAHTGFAFKHDR---DQYQLFCQGFPFDTTPDQAQAINAVLSDMCR 619
Query: 172 KSS 174
+
Sbjct: 620 PLA 622
>gi|183599469|ref|ZP_02960962.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827]
gi|188021716|gb|EDU59756.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827]
Length = 1148
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 16/160 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I
Sbjct: 475 ELRPGQPVVHIEHGVGRYQGLTTLEAGGIKAEYLILTYAGND-KLYVPVSSLHLISRYSG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + ++P +
Sbjct: 534 GADENAP------------LHRLGSDSWGKARHKAAEKVRDVAAELLDIYAQRAAKPGFA 581
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + + + +AIN + ++
Sbjct: 582 FKHD---KEQYQEFCQGFPFETTPDQEQAINAVLSDMCQP 618
>gi|329954432|ref|ZP_08295523.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056]
gi|328527400|gb|EGF54397.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056]
Length = 1157
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG T + E + ++ + V + +
Sbjct: 465 ELNQFTPGDYVVHTDHGVGRFTGLVRIPNGDTTQEVMRL-VYQNDDVVFVSIHSLHKVSK 523
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 524 YKGKE------------GEAPRLNKLGTGAWEKLKDRTKTKIKDIARDLIKLYSQRREEK 571
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + ++ + +A ++ ++ S
Sbjct: 572 GFQYSPDSFLQR---ELEASFIYEDTPDQSKATADVKADMESARP 613
>gi|260913085|ref|ZP_05919567.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC
43325]
gi|260632672|gb|EEX50841.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC
43325]
Length = 1145
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 25/181 (13%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + E G+ E+ ++ + +
Sbjct: 459 SRDKRKSVNPDTLIRNLAELKIGQPVVHLEHGVGRYAGLVTLENGGITAEYLLLNYAN-E 517
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I L + A K
Sbjct: 518 SKLYVPVSSLHLISRYVGGSDETAP--LHKLGSDA--------------WVKARHKAAEK 561
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I +V +L +Q E Y+ + +I + AIN + ++
Sbjct: 562 IRDVAAELLDVYAQREAQKGFAFNYDREEFQQFAATFPFEETIDQEMAINAVISDMCQPK 621
Query: 174 S 174
+
Sbjct: 622 A 622
>gi|229520346|ref|ZP_04409772.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80]
gi|229342712|gb|EEO07704.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80]
Length = 1157
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 483 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 542 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 585
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 586 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 628
>gi|126437189|ref|YP_001072880.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
gi|126236989|gb|ABO00390.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
Length = 1211
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ +
Sbjct: 502 LAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVGGARREYLVLEYASSKRGGGSD 561
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 562 RLYVPMDSLDQLSRY--------------VGGEAPSLSKLGGSDWANTKTKARRAVREIA 607
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 608 SELVALYAKRQAAPGHAFSPDTPWQNEME---DAFGFTETVDQLTAIEEVKADMEKPVP 663
>gi|108801209|ref|YP_641406.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
gi|119870360|ref|YP_940312.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
gi|108771628|gb|ABG10350.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
gi|119696449|gb|ABL93522.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
Length = 1211
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ +
Sbjct: 502 LAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVGGARREYLVLEYASSKRGGGSD 561
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 562 RLYVPMDSLDQLSRY--------------VGGEAPSLSKLGGSDWANTKTKARRAVREIA 607
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 608 SELVALYAKRQAAPGHAFSPDTPWQNEME---DAFGFTETVDQLTAIEEVKADMEKPVP 663
>gi|297579403|ref|ZP_06941331.1| transcription-repair coupling factor [Vibrio cholerae RC385]
gi|297536997|gb|EFH75830.1| transcription-repair coupling factor [Vibrio cholerae RC385]
Length = 1155
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 626
>gi|332971662|gb|EGK10611.1| transcription-repair coupling factor [Psychrobacter sp. 1501(2011)]
Length = 1243
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/182 (13%), Positives = 55/182 (30%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++++ + + F G +V+ G+G + + + EF + +
Sbjct: 545 TRRRRQSDVSEEFLIKSVTELTEGSPVVHINQGIGRYHGLITLDAGEGEQEFIHLKYAD- 603
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ VPV I + K+ GK K L
Sbjct: 604 DASIYVPVANLQLISRYSGGDPALA-PLHKIGSGK---------------WDKAKQKALE 647
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSK 172
I +V +L ++ + ++A + A + + AI+ + ++
Sbjct: 648 QIHDVAAELLNMQARRQAKEGIHFKVDTAQYELFASQFAFEETPDQANAIDAVIHDMKQS 707
Query: 173 SS 174
Sbjct: 708 KP 709
>gi|294794147|ref|ZP_06759284.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
gi|294455717|gb|EFG24089.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
Length = 1098
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + G+++V+ HG+G +K E G+ ++ IA+ L +P
Sbjct: 413 PKKGQEINYFTDLTPGDYVVHNMHGIGKYIGLKTIETEGIHRDYIEIAYAGTD-KLFLPA 471
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ +E M R + K ++V
Sbjct: 472 NNLDQLQKYIGNEGDV------------PRINKMGGRDWSKVVTKAKKSIDDLADKLVEI 519
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ Q ++ + + +A I+ ++
Sbjct: 520 YAQREITEGFAFLPDQPWQ---QEFEDAFPYEETKDQLQATAEIKESMERPVP 569
>gi|183179491|ref|ZP_02957702.1| transcription-repair coupling factor [Vibrio cholerae MZO-3]
gi|183012902|gb|EDT88202.1| transcription-repair coupling factor [Vibrio cholerae MZO-3]
Length = 1155
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 626
>gi|261210529|ref|ZP_05924822.1| transcription-repair coupling factor [Vibrio sp. RC341]
gi|260840314|gb|EEX66885.1| transcription-repair coupling factor [Vibrio sp. RC341]
Length = 1155
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 626
>gi|121998047|ref|YP_001002834.1| transcription-repair coupling factor [Halorhodospira halophila SL1]
gi|121589452|gb|ABM62032.1| transcription-repair coupling factor [Halorhodospira halophila SL1]
Length = 1147
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G +V+ HGVG ++ V + EF + + L VPV I
Sbjct: 470 DLSDLHEGAPVVHEDHGVGRYVGLQSLSVGDVTTEFLTLEYAGGD-KLYVPVSALDRISR 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++A + R + K +V +L ++
Sbjct: 529 YTGADADEAPQ----------------HRLGSDQWDKARRHAAKRARDVAAELLDLYARR 572
Query: 130 EKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + L+ + A + + AI + +L S
Sbjct: 573 QARAGDACLFDDEAYEAFASAFPFEETPDQQAAIQAVLDDLRSDQP 618
>gi|90424109|ref|YP_532479.1| transcription-repair coupling factor [Rhodopseudomonas palustris
BisB18]
gi|90106123|gb|ABD88160.1| transcription-repair coupling factor [Rhodopseudomonas palustris
BisB18]
Length = 1172
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 50/167 (29%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G ++ EV G + L +PV +
Sbjct: 495 SEVTSLAAGDLVVHVEHGIGRFVGLQTLEVGGAPHDCL-ELHYAADTKLFLPVENIELLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G + W R + + I E+ +L + ++
Sbjct: 554 RY---GSDHAHVELDRLGG------SGWQARKAKLKNR--------IREMAGELIKIAAE 596
Query: 129 PEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + + AI +L S
Sbjct: 597 RHLREAPKLVVQPHLYDEFCARFPYDETEDQLGAIQASLHDLESGKP 643
>gi|261392435|emb|CAX49980.1| transcription-repair coupling factor (TRCF) [Neisseria meningitidis
8013]
Length = 1379
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 692 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAG-EA 750
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 751 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 797
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 798 AAELLNLYARRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 854
>gi|170720851|ref|YP_001748539.1| transcription-repair coupling factor [Pseudomonas putida W619]
gi|169758854|gb|ACA72170.1| transcription-repair coupling factor [Pseudomonas putida W619]
Length = 1149
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFL-TLEYAEGAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + AI + ++ +
Sbjct: 584 AFAD---PAADYATFSAGFPFEETPDQQNAIEAVRADMLAAKP 623
>gi|146317670|ref|YP_001197382.1| transcription-repair coupling factor [Streptococcus suis 05ZYH33]
gi|253750931|ref|YP_003024072.1| transcription-repair coupling factor [Streptococcus suis SC84]
gi|253752830|ref|YP_003025970.1| transcription-repair coupling factor [Streptococcus suis P1/7]
gi|253754655|ref|YP_003027795.1| transcription-repair coupling factor [Streptococcus suis BM407]
gi|145688476|gb|ABP88982.1| Transcription-repair coupling factor (superfamily II helicase)
[Streptococcus suis 05ZYH33]
gi|251815220|emb|CAZ50784.1| putative transcription-repair coupling factor [Streptococcus suis
SC84]
gi|251817119|emb|CAZ54840.1| putative transcription-repair coupling factor [Streptococcus suis
BM407]
gi|251819075|emb|CAR44089.1| putative transcription-repair coupling factor [Streptococcus suis
P1/7]
gi|292557472|gb|ADE30473.1| Transcription-repair coupling factor [Streptococcus suis GZ1]
Length = 1164
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G+++V+ HG+G I+ E++G+ ++ ++ + +PV +
Sbjct: 482 RIKDYSELAVGDYVVHHVHGIGQYLGIETIEISGIHRDYL-TVQYQNSDRISIPVEQIDL 540
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GKA + R Q K+ ++++
Sbjct: 541 LSKYLAS------------DGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERS 588
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + V + + +I+ I+ ++ S
Sbjct: 589 QLKGFAFSPD---DENQVEFDNYFTHVETDDQLRSIDEIKKDMEKDSP 633
>gi|260684556|ref|YP_003215841.1| putative regulatory protein [Clostridium difficile CD196]
gi|260688214|ref|YP_003219348.1| putative regulatory protein [Clostridium difficile R20291]
gi|260210719|emb|CBA65560.1| putative regulatory protein [Clostridium difficile CD196]
gi|260214231|emb|CBE06513.1| putative regulatory protein [Clostridium difficile R20291]
Length = 169
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 6/164 (3%)
Query: 14 FRTGEHIVYPAHGVGTITEIKE-QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ ++I+Y GV + +I + G+K E++V++ + + MRKL
Sbjct: 6 FKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLSPIYSNNTVIKIPVDNEKVPMRKL 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTDS 127
V + + R++++ + G + ++VR + +
Sbjct: 66 LSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVKSI 125
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ ++ + + A + E A + IS E + I ++
Sbjct: 126 GKKTHQADDNIMKEAERLLSEEFATILDISPNEVSSYISSHIPQ 169
>gi|154248182|ref|YP_001419140.1| transcription-repair coupling factor [Xanthobacter autotrophicus
Py2]
gi|154162267|gb|ABS69483.1| transcription-repair coupling factor [Xanthobacter autotrophicus
Py2]
Length = 1168
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G+ +V+ HG+G +K E G + I + L +PV +
Sbjct: 492 TELTALTAGDLVVHVDHGIGRFIGLKTVEAMGAPHDCLEIHYAGGD-KLFLPVENLELLS 550
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ E L + G A W R + I E+ +L + +Q
Sbjct: 551 RY---GSEDTEAQLDKLGGGA------WQARKARMKKR--------IREMASELIKIAAQ 593
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + + AI+ + +L+S
Sbjct: 594 RQLGEAPKLVPAMGLYDEFRARFPYEETDDQDAAIDAVLDDLASGHP 640
>gi|241896607|ref|ZP_04783903.1| transcription-repair coupling factor [Weissella paramesenteroides
ATCC 33313]
gi|241870088|gb|EER73839.1| transcription-repair coupling factor [Weissella paramesenteroides
ATCC 33313]
Length = 1166
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V HG+G ++ E G+K + ++ + L +PV + +
Sbjct: 495 ELKPGDYVVNVNHGIGIYEGMQTIENRGVKQD-YITIAYQKGDKLFIPVTQLDLVQKYVG 553
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ KA M Q AK+ +++ + + +
Sbjct: 554 AA------------EKAPRINKMGGTEWQRAKAKVAKKVEDIADDLLALYAEREIKQGYA 601
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + R + + ++ I+ ++
Sbjct: 602 FAPD---DEEMRRFEEAFPYPETPDQIRSVKEIKADMEKSRP 640
>gi|238018751|ref|ZP_04599177.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
gi|237864517|gb|EEP65807.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
Length = 1098
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/173 (10%), Positives = 49/173 (28%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + G+++V+ HG+G +K E G+ ++ I + L +P
Sbjct: 413 PKKGQEINYFTDLTPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIDYAGSD-KLFLPA 471
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ +E M R + K ++V
Sbjct: 472 NNLDQLQKYIGNEGDV------------PRINKMGGRDWAKVVTKAKKSIDDLADKLVDL 519
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ Q ++ + + +A I+ ++
Sbjct: 520 YAQREITQGFAFLPDQPWQ---QEFEDAFPYEETEDQLQATAEIKASMEKPVP 569
>gi|220930374|ref|YP_002507283.1| CarD family transcriptional regulator [Clostridium cellulolyticum
H10]
gi|220000702|gb|ACL77303.1| transcriptional regulator, CarD family [Clostridium cellulolyticum
H10]
Length = 175
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 7/173 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV--GKAIDIGMR 70
F G I+Y HG+ I E+K+ + ++V+ + + + MR
Sbjct: 1 MFSVGNTIIYGNHGICKIVEVKDMTIDSNTRPYYVLKPVFENNSTIYFPVGNEIAEKKMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RT 125
++ + ++ + + + + R + Y + + D A+ ++++ LH
Sbjct: 61 RILSVEEIYTLIREMPDENTIWIENENERKEVYKSILTGTDRSALVKLIKTLHLHEKELK 120
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEK 178
D + S+ + + A + E V I E + I + S K +
Sbjct: 121 DLGKKLHASDEKFLKDAEKTLYDEFVYVLDIDREEVLPFIMEQIEINSKKQGE 173
>gi|300716251|ref|YP_003741054.1| transcription-repair-coupling factor [Erwinia billingiae Eb661]
gi|299062087|emb|CAX59203.1| Transcription-repair-coupling factor [Erwinia billingiae Eb661]
Length = 1147
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R R+G+ +V+ HGVG + E G+ E+ ++ +
Sbjct: 455 SRRRQDSRRTINPDVLIRNLAELRSGQPVVHLEHGVGRYIGLTTLETGGITAEYLMLTYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I + S K
Sbjct: 515 G-DAKLYVPVSSLHLISRYAGGADENAP------------LHKLGSDAWSRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + +++ ++ + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQREAKSGFAFKHDR---EQYQLFCESFPFETTPDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|297572061|ref|YP_003697835.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
DSM 20595]
gi|296932408|gb|ADH93216.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
DSM 20595]
Length = 1168
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/182 (12%), Positives = 61/182 (33%), Gaps = 25/182 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA---GMKLEFFVIAFD-----K 52
M ++K + G+++V+ HGV ++ ++ + G + E+ V+ +
Sbjct: 473 MPKRRKNAVDPLQLKPGDYVVHQRHGVAQFVKLAKRALGGRSGSQREYVVLEYASSKRGN 532
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP + + G A M + AK +
Sbjct: 533 PRDQLWVPTDQLDQVTKYSG--------------GDAPSLNKMGGADWAKTKAKARAAIK 578
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E++R + + ++ ++ + A + + + I+ ++ ++ S
Sbjct: 579 QIAKELIRLYAQRRATKGHAFGPDTPWQR---ELEDAFAYIETPDQISTIDDVKRDMESL 635
Query: 173 SS 174
Sbjct: 636 EP 637
>gi|241765264|ref|ZP_04763245.1| transcription-repair coupling factor [Acidovorax delafieldii 2AN]
gi|241365055|gb|EER59947.1| transcription-repair coupling factor [Acidovorax delafieldii 2AN]
Length = 1172
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/190 (13%), Positives = 58/190 (30%), Gaps = 32/190 (16%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------ 44
T ++++ + G+ +V+ AHG+G + +V +
Sbjct: 468 TTRRRKKQEQVSDVEALIKDLAELNVGDPVVHSAHGIGRYRGLVNMDVGNKNPDGTPAMQ 527
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ DK L VPV + I A + S + ++
Sbjct: 528 EFLHLEYADKAVLYVPVSQLQLISRYTGVNAD------------EAPLHKLGSGQWEKAK 575
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
K + AE++ R ++ ++ + + + + AI+
Sbjct: 576 RKAAEQVRDSAAELLNIYARRAAREGHAF---RYSPQDYETFANDFGFEETADQNAAIHA 632
Query: 165 IEVNLSSKSS 174
+ ++ S
Sbjct: 633 VIQDMISPRP 642
>gi|167763421|ref|ZP_02435548.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC
43183]
gi|167698715|gb|EDS15294.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC
43183]
Length = 1128
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG T + E + ++ + V + +
Sbjct: 436 ELNQFTPGDYVVHTDHGVGRFTGLVRIPNGDTTQEVMRL-VYQNDDVVFVSIHSLHKVSK 494
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 495 YKGKE------------GEAPRLNKLGTGAWEKLKDRTKTKIKDIARDLIKLYSQRREEK 542
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + ++ + +A ++ ++ S
Sbjct: 543 GFQYSPDSFLQR---ELEASFIYEDTPDQSKATADVKADMESARP 584
>gi|229529092|ref|ZP_04418482.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)]
gi|229332866|gb|EEN98352.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)]
Length = 1157
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 483 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 542 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 585
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 586 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 628
>gi|260582935|ref|ZP_05850719.1| transcription-repair coupling factor [Haemophilus influenzae NT127]
gi|260094035|gb|EEW77939.1| transcription-repair coupling factor [Haemophilus influenzae NT127]
Length = 1146
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LYKLGNEAWVKSRQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|78189837|ref|YP_380175.1| transcription-repair coupling factor [Chlorobium chlorochromatii
CaD3]
gi|78172036|gb|ABB29132.1| Transcription-repair coupling factor [Chlorobium chlorochromatii
CaD3]
Length = 1099
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 56/176 (31%), Gaps = 21/176 (11%)
Query: 4 QQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ Q + G+++V+ +G+G ++ + E V+ + L
Sbjct: 384 RKRKVRGISLKELQKLKVGDYVVHEDYGIGIFKSLETITAGNSEQES-VLIEYANGDQLF 442
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V V + SE + S + K+ +
Sbjct: 443 VNVQNIHLLSKYTASENSS------------PTLSKLGSSKWAAKKEKVRKKIRDIAINL 490
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + QP +++ ++ + + + AIN ++ ++ +
Sbjct: 491 IKVYAQRKMQPGFAFAPDSIF---MREFEAAFIFDETPDQLRAINDVKKDMQASHP 543
>gi|313668421|ref|YP_004048705.1| transcription-repair coupling factor [Neisseria lactamica ST-640]
gi|313005883|emb|CBN87339.1| transcription-repair coupling factor [Neisseria lactamica 020-06]
Length = 1164
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 475 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 533
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 534 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 580
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 581 AAELLNLYARRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 637
>gi|83942375|ref|ZP_00954836.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36]
gi|83846468|gb|EAP84344.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36]
Length = 1162
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R Q G+ +V+ HGVG ++ AG E ++ + + L
Sbjct: 468 PKRKRRAENFLTETQSLSPGDLVVHVDHGVGRYLGMEVVTAAGAAHECLLLEYA-ESSKL 526
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+ +
Sbjct: 527 YLPVENIELLSRY-----GHDEGLLDKLGGGA----------WQSKKAKLKERIREMADK 571
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + AI+ + +L+S +
Sbjct: 572 LIRIAAERALRKAPVMDPPPGM---WDAFSARFPYTETDDQLNAISDVLDDLTSGNP 625
>gi|291166313|gb|EFE28359.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896]
Length = 1124
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 15/168 (8%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K+ + G+++V+ +GVG EI+++E G+K ++ IA+ L VP+ +
Sbjct: 477 KKIENFIQLKKGDYVVHETYGVGQFIEIEQREFDGIKKDYIKIAYFGGDS-LYVPLEQMD 535
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + A + KL S ++ A+ ++V
Sbjct: 536 KVQSFIGNSAEQAYKLSKL-----------GSSDWKKSKARTKKAVEAIAQDLVELYAVR 584
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+++ S+ E +++ + + +AI ++ ++ S
Sbjct: 585 ENEKGYSFQEDTVWQR---EFEDAFPYEETDDQLKAIEEVKRDMESSR 629
>gi|229508016|ref|ZP_04397521.1| transcription-repair coupling factor [Vibrio cholerae BX 330286]
gi|229511745|ref|ZP_04401224.1| transcription-repair coupling factor [Vibrio cholerae B33]
gi|229518883|ref|ZP_04408326.1| transcription-repair coupling factor [Vibrio cholerae RC9]
gi|229607563|ref|YP_002878211.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236]
gi|229343572|gb|EEO08547.1| transcription-repair coupling factor [Vibrio cholerae RC9]
gi|229351710|gb|EEO16651.1| transcription-repair coupling factor [Vibrio cholerae B33]
gi|229355521|gb|EEO20442.1| transcription-repair coupling factor [Vibrio cholerae BX 330286]
gi|229370218|gb|ACQ60641.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236]
Length = 1157
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 483 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 542 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 585
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 586 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 628
>gi|153825189|ref|ZP_01977856.1| transcription-repair coupling factor [Vibrio cholerae MZO-2]
gi|149741168|gb|EDM55219.1| transcription-repair coupling factor [Vibrio cholerae MZO-2]
Length = 1155
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 626
>gi|319757180|gb|ADV69122.1| transcription-repair coupling factor [Streptococcus suis JS14]
Length = 1164
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G+++V+ HG+G I+ E++G+ ++ ++ + +PV +
Sbjct: 482 RIKDYSELAVGDYVVHHVHGIGQYLGIETIEISGIHRDYL-TVQYQNSDRISIPVEQIDL 540
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GKA + R Q K+ ++++
Sbjct: 541 LSKYLAS------------DGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERS 588
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + V + + +I+ I+ ++ S
Sbjct: 589 QLKGFAFSPD---DENQVEFDNYFTHVETDDQLRSIDEIKKDMEKDSP 633
>gi|261400667|ref|ZP_05986792.1| transcription-repair coupling factor [Neisseria lactamica ATCC
23970]
gi|269209577|gb|EEZ76032.1| transcription-repair coupling factor [Neisseria lactamica ATCC
23970]
Length = 1164
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 475 RRKKHAAISDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 533
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 534 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 580
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 581 AAELLNLYARRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 637
>gi|153213092|ref|ZP_01948630.1| transcription-repair coupling factor [Vibrio cholerae 1587]
gi|124116139|gb|EAY34959.1| transcription-repair coupling factor [Vibrio cholerae 1587]
Length = 1155
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 626
>gi|254226050|ref|ZP_04919649.1| transcription-repair coupling factor [Vibrio cholerae V51]
gi|125621433|gb|EAZ49768.1| transcription-repair coupling factor [Vibrio cholerae V51]
Length = 1155
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 626
>gi|121727094|ref|ZP_01680268.1| transcription-repair coupling factor [Vibrio cholerae V52]
gi|121630472|gb|EAX62864.1| transcription-repair coupling factor [Vibrio cholerae V52]
Length = 1155
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 626
>gi|332880692|ref|ZP_08448365.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332681326|gb|EGJ54250.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 1133
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 14/165 (8%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q F G+++V+ HGVG + G ++ + ++ + V + +
Sbjct: 442 ELQEFNIGDYVVHVDHGVGKFGGLVRI-PNGDTMQEVIKIIYQNDDVVFVSIHSLHKVSK 500
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ E G+ + + + + + ++++ +
Sbjct: 501 YRGKE------------GEPPRLNKLGTGAWERLKERTKTKIKDIARDLIKLYSLRRQEK 548
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++
Sbjct: 549 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQAVKADMERDRP 590
>gi|225016418|ref|ZP_03705610.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum
DSM 5476]
gi|224950803|gb|EEG32012.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum
DSM 5476]
Length = 1152
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 18/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
++++ + G+ +V+ +HG+G I + G+ ++ I K L VP
Sbjct: 478 KRRKGEEIRSLSDINVGDFVVHVSHGIGVFEGIANLNLQGVSKDYIKIK-YKGSDVLYVP 536
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V + + + + R +L + + +++ E++R
Sbjct: 537 VTQLDMVSKYIGPKENGAVRLNRLNSDE-----------WNKTRSRVKKAVAEMADELIR 585
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ ++ + + I I+ ++ S
Sbjct: 586 LYAERAKTKGYAFSKDNEWQR---EFEDHFEYEETEDQLRCIEEIKADMESDRP 636
>gi|213051995|ref|ZP_03344873.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 718
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|15641888|ref|NP_231520.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121587314|ref|ZP_01677086.1| transcription-repair coupling factor [Vibrio cholerae 2740-80]
gi|147674778|ref|YP_001217419.1| transcription-repair coupling factor [Vibrio cholerae O395]
gi|153823448|ref|ZP_01976115.1| transcription-repair coupling factor [Vibrio cholerae B33]
gi|227082016|ref|YP_002810567.1| transcription-repair coupling factor [Vibrio cholerae M66-2]
gi|254848973|ref|ZP_05238323.1| transcription-repair coupling factor [Vibrio cholerae MO10]
gi|255745354|ref|ZP_05419303.1| transcription-repair coupling factor [Vibrio cholera CIRS 101]
gi|262153542|ref|ZP_06028671.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1]
gi|262167442|ref|ZP_06035149.1| transcription-repair coupling factor [Vibrio cholerae RC27]
gi|298498075|ref|ZP_07007882.1| transcription-repair coupling factor [Vibrio cholerae MAK 757]
gi|9656418|gb|AAF95034.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121548474|gb|EAX58532.1| transcription-repair coupling factor [Vibrio cholerae 2740-80]
gi|126519037|gb|EAZ76260.1| transcription-repair coupling factor [Vibrio cholerae B33]
gi|146316661|gb|ABQ21200.1| transcription-repair coupling factor [Vibrio cholerae O395]
gi|227009904|gb|ACP06116.1| transcription-repair coupling factor [Vibrio cholerae M66-2]
gi|227013784|gb|ACP09994.1| transcription-repair coupling factor [Vibrio cholerae O395]
gi|254844678|gb|EET23092.1| transcription-repair coupling factor [Vibrio cholerae MO10]
gi|255737184|gb|EET92580.1| transcription-repair coupling factor [Vibrio cholera CIRS 101]
gi|262024139|gb|EEY42833.1| transcription-repair coupling factor [Vibrio cholerae RC27]
gi|262030669|gb|EEY49304.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1]
gi|297542408|gb|EFH78458.1| transcription-repair coupling factor [Vibrio cholerae MAK 757]
Length = 1155
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 481 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 540 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 583
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 584 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 626
>gi|90408104|ref|ZP_01216274.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
gi|90310790|gb|EAS38905.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
Length = 1158
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+ +V+ +G+G ++ E AG EF V L VPV I
Sbjct: 485 EELKIGQPVVHIDYGIGRYLGLQNIESAGAITEF-VALEYLRGDKLYVPVSALQLISRYS 543
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ ++ S+ E K + +V +L +Q
Sbjct: 544 GHDVENIKL----------------SKLGTETWQKSKQKAAERVRDVAAELLDIYAQRAA 587
Query: 132 SYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ S+
Sbjct: 588 KIGFKYTLNKNNYALFKQAFPFEETPDQSNAINAVLNDMCSRQP 631
>gi|256111504|ref|ZP_05452518.1| transcription-repair coupling factor [Brucella melitensis bv. 3
str. Ether]
gi|265993002|ref|ZP_06105559.1| transcription-repair coupling factor [Brucella melitensis bv. 3
str. Ether]
gi|262763872|gb|EEZ09904.1| transcription-repair coupling factor [Brucella melitensis bv. 3
str. Ether]
Length = 1170
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHHCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|296535472|ref|ZP_06897661.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC
49957]
gi|296264193|gb|EFH10629.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC
49957]
Length = 1174
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ HG+G ++ V+G + + L +PV +
Sbjct: 495 ADATEIAEGDLVVHQDHGIGRYDGLETLAVSGAPHDCLRL-LYDGGDKLFLPVENIELLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ AL + G + Q AK +++R
Sbjct: 554 R---FGSDSAGVALDKLGGTS----------WQNRKAKAKQRIADMAGQLIRIAAER--- 597
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
K E A + + + AI + +L++
Sbjct: 598 RVKDAPLVTPPEGAWDEFCARFPFAETEDQQRAIADVLEDLAAGRP 643
>gi|226939558|ref|YP_002794631.1| Mfd [Laribacter hongkongensis HLHK9]
gi|226714484|gb|ACO73622.1| Mfd [Laribacter hongkongensis HLHK9]
Length = 1131
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 56/177 (31%), Gaps = 21/177 (11%)
Query: 3 FQQKRDAMRQ-----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++ + + G+ +V+ AHG+G + ++ + E + + L
Sbjct: 451 QKKRSNTDAMLRDLAEVKVGDPVVHEAHGIGRYLGLVSMDLGEGQTEMMQLEYAD-GATL 509
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + I + V+ + S + + + AE
Sbjct: 510 YVPVSQLHLISRYAGHASDSVQ------------LTRLGSPQWERAKQRAAQKARDTAAE 557
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +L+ + E E L + + AI + ++++
Sbjct: 558 LL-NLYARRAAREGHAFE--LSAHDYEAFAAGFGFEETPDQQAAIEAVIHDMTAGRP 611
>gi|119472828|ref|ZP_01614752.1| transcription-repair ATP-dependent coupling factor [Alteromonadales
bacterium TW-7]
gi|119444723|gb|EAW26029.1| transcription-repair ATP-dependent coupling factor [Alteromonadales
bacterium TW-7]
Length = 1157
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG ++ + AG+ EF V + L VPV +
Sbjct: 485 ELKEGQPVVHLDHGVGRYQGLQTIDAAGVITEF-VTIIYAGESKLYVPVSALHMLSRY-- 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S L + A K + +V +L +Q +
Sbjct: 542 SGGEESSAPLHKLGSDA--------------WEKAKKRAAEKVRDVAAELLDIYAQRQAK 587
Query: 133 YSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A + + + AI + ++ SK +
Sbjct: 588 PGNKFTLDGQAYRQFSESFPFEETDDQRNAIEAVLGDMQSKQA 630
>gi|72382209|ref|YP_291564.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. NATL2A]
gi|72002059|gb|AAZ57861.1| transcription-repair coupling factor [Prochlorococcus marinus str.
NATL2A]
Length = 1167
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/176 (11%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K+ ++ + G+++V+ HG+G +I++ + G ++ VI + L
Sbjct: 483 RRRKQSQSKKIDPNKMKPGDYVVHRNHGIGLFQKIEKLNINGESRDYLVIKY--MDGKLS 540
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + +G + S A K + + K ++
Sbjct: 541 VAADQLGSLGRYRSSNA------------KTPTISKLGGANWNKIKEKAKKSVKKVAIDL 588
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + ++ N + + + A + ++ ++ S+
Sbjct: 589 IKLYAERSKEKGYKFPCDGPWQ---NELEDSFPYALTPDQATATSQVKSDMESEKP 641
>gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
Length = 1173
Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++V+ HG+G T ++ E+ G+ ++ KD L +PV + +
Sbjct: 496 SELNPGDYVVHVNHGIGKYTGMETLEIDGIHQDYM-SIIYKDDAKLFIPVTQLNLLQKYV 554
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SEA + + G AK I ++ +L + E+
Sbjct: 555 SSEAKTPR--VNKLGGTE--------------WAKTKKKVATKIEDIADELIELYAAREQ 598
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + I+ ++ K
Sbjct: 599 EVGYAFSPDDAYQEEFENAFPYTETEDQLSSTAEIKHDMEQKKP 642
>gi|325136213|gb|EGC58821.1| transcription-repair coupling factor [Neisseria meningitidis M0579]
Length = 1296
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + + G E ++ + +
Sbjct: 609 RRKKHAAVSDDLLRDLAEINIGDPVVHEEHGIGRYMGLITMNLGGETNEMMLLEYAG-EA 667
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 668 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 714
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 715 AAELLNLYARRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 771
>gi|296140872|ref|YP_003648115.1| transcription-repair coupling factor [Tsukamurella paurometabola
DSM 20162]
gi|296029006|gb|ADG79776.1| transcription-repair coupling factor [Tsukamurella paurometabola
DSM 20162]
Length = 1218
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ VAG + E+ V ++
Sbjct: 503 LPAKRRNQVDPLALTAGDLVVHDEHGIGKFVEMIERTVAGARREYLV---------IEYA 553
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G + +++ + V G+ M Q K E+V+
Sbjct: 554 PSKRGQPGDKLFVPMESLDQLSRYVGGEMPALSKMGGSDWQNTKRKARKAVREIAGELVQ 613
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ P +++ ++ + ++ + I ++ ++
Sbjct: 614 LYAARNAAPGHAFAPDSPWQREME---DAFPFTETVDQMTVIGDVKSDMEKAVP 664
>gi|160940591|ref|ZP_02087935.1| hypothetical protein CLOBOL_05486 [Clostridium bolteae ATCC
BAA-613]
gi|158436551|gb|EDP14318.1| hypothetical protein CLOBOL_05486 [Clostridium bolteae ATCC
BAA-613]
Length = 165
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 5/165 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE+I+Y GV + I + + + ++ + D+ + + MR++
Sbjct: 1 MFKKGEYILYGTVGVCQVEGISKPDFSNNDKVYYSLVPKFDQDTTIYIPVDSPKVKMREI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTDS 127
E+ + + + R Q Y + SGD +A +++++ +R
Sbjct: 61 MTRQEAEQFILALPSVEGKQYANDKERPQAYRQILESGDCTQLASMIKEISEMEQNRRGK 120
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
S ER +SA + E+A I E + I +
Sbjct: 121 GKPLSIRERDGVKSARKLLFGELATALDICPEEIPDYITSQIGEA 165
>gi|113867469|ref|YP_725958.1| transcription-repair coupling factor [Ralstonia eutropha H16]
gi|113526245|emb|CAJ92590.1| Transcription-repair coupling factor [Ralstonia eutropha H16]
Length = 1149
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 48/183 (26%), Gaps = 27/183 (14%)
Query: 2 TFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
T ++K++ + G+ +V+ HG+G + ++ EF +
Sbjct: 463 TGRRKQEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVTLDMGQGDEEFLHLD-YD 521
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + I ++ L + K
Sbjct: 522 KGSKLYVPVHQLHVISRYSGADPDTAP--LHHLGSGQ--------------WDKAKRKAA 565
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSS 171
I + +L ++ + + AI + +++S
Sbjct: 566 QQIRDTAAELLNLYARRAAREGFAFPLSPKDYETFAESFGFEETPDQAAAIAAVIADMTS 625
Query: 172 KSS 174
Sbjct: 626 GKP 628
>gi|260906157|ref|ZP_05914479.1| transcription-repair coupling factor [Brevibacterium linens BL2]
Length = 1197
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T +++ G+ +V+ HGVG E+ ++ ++ + L+
Sbjct: 498 TRRKRNQVDPLNLAPGDFVVHDQHGVGKFVEMTQRTTGKGP-----NKHTREYLILEYAP 552
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G R + +++ + V G++ M AK E+VR
Sbjct: 553 AKRGQPGDRLYVPSDALDQVSRYVGGESPTLNKMGGSDWSTTKAKARKAVKEIAGELVRL 612
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Y ++ + V + + I+ ++ ++
Sbjct: 613 YSARQATVGHTYGPDTPWQR---ELEDAFHYVETADQLTTIDEVKGDMEKAVP 662
>gi|308389402|gb|ADO31722.1| transcription-repair coupling factor [Neisseria meningitidis
alpha710]
Length = 1227
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + + G E ++ + +
Sbjct: 540 RRKKHAAVSDDLLRDLAEINIGDPVVHEEHGIGRYMGLITMNLGGETNEMMLLEYAG-EA 598
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 599 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 645
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 646 AAELLNLYARRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 702
>gi|296452199|ref|ZP_06893907.1| CarD family transcriptional regulator [Clostridium difficile NAP08]
gi|296877552|ref|ZP_06901584.1| CarD family transcriptional regulator [Clostridium difficile NAP07]
gi|296258938|gb|EFH05825.1| CarD family transcriptional regulator [Clostridium difficile NAP08]
gi|296431454|gb|EFH17269.1| CarD family transcriptional regulator [Clostridium difficile NAP07]
Length = 169
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 6/164 (3%)
Query: 14 FRTGEHIVYPAHGVGTITEIKE-QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ ++I+Y GV + +I + G+K E++V+ + + MRKL
Sbjct: 6 FKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLNPIYSNNTIIKIPVDNEKVPMRKL 65
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTDS 127
V + + R++++ + G + ++VR + +
Sbjct: 66 LSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVKSI 125
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ ++ + + A + E A + IS E + I ++
Sbjct: 126 GKKTHQADDNIMKEAERLLNEEFATILDISPNEVSSYISSHIPQ 169
>gi|298291681|ref|YP_003693620.1| transcription-repair coupling factor [Starkeya novella DSM 506]
gi|296928192|gb|ADH89001.1| transcription-repair coupling factor [Starkeya novella DSM 506]
Length = 1170
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ HG+G +K E G + + L +PV +
Sbjct: 492 AELTSLTAGDLVVHVDHGIGRFIGLKTIEAMGAPHDCL-EIHYAEGSKLFLPVENLELLS 550
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ E L + G Q A++ S AE+++ +
Sbjct: 551 RY---GSEDTEAQLDRLGGGG----------WQARKARMKSRIREMAAELIKVAAQRQLH 597
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L S
Sbjct: 598 EAPRLVPAAGL---YDEFRARFPYEETEDQDAAIESVFDDLGSGHP 640
>gi|225024865|ref|ZP_03714057.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC
23834]
gi|224942394|gb|EEG23603.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC
23834]
Length = 1271
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 584 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 642
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 643 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKC-----------KAAEKARDT 689
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 690 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 746
>gi|110598535|ref|ZP_01386804.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM
13031]
gi|110339839|gb|EAT58345.1| transcription-repair coupling factor [Chlorobium ferrooxidans DSM
13031]
Length = 1108
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 56/176 (31%), Gaps = 21/176 (11%)
Query: 4 QQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ Q + G+++V+ +G+G ++ V + E V+ + L
Sbjct: 398 RKRKIRGISLKDLQKLKVGDYVVHEDYGIGIFKSLETITVGNSEQES-VLVEYEGGDQLF 456
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V V + SE G + S + K+ +
Sbjct: 457 VNVQNINLLSKYTASE------------GSLPSLSKLGSSKWAAKKEKVRGKLRDTAINL 504
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Q +++ ++ + + + AI ++ ++ +
Sbjct: 505 IKIYAQRKMQSGFAFAADSIF---MREFEASFIFEETPDQHRAIVEVKKDMEAPHP 557
>gi|325678530|ref|ZP_08158141.1| transcription-repair coupling factor [Ruminococcus albus 8]
gi|324109749|gb|EGC03954.1| transcription-repair coupling factor [Ruminococcus albus 8]
Length = 1153
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 23/182 (12%)
Query: 1 MTFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
MT ++K+ + G G+ +V+ +G+G I+ E G+K ++ I +
Sbjct: 467 MTTKRKKPKHKAGEEIKALSDIHTGDLVVHSMYGIGKFQGIRNIETNGVKKDYITINYAG 526
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VPV + + + KL S K+ +
Sbjct: 527 TDV-LYVPVTQLDLVSRYVGPGEDGGIKLNKL-----------NSTEWTRTRNKVRAAVK 574
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+ + + ++ + + + + AIN I+ ++ +
Sbjct: 575 DMAEELTKLYAQRQMAKGYAFEPDDDW---MREFEERFDYQETDDQLRAINEIKGDMEKQ 631
Query: 173 SS 174
+
Sbjct: 632 TP 633
>gi|104782724|ref|YP_609222.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
gi|95111711|emb|CAK16435.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
Length = 1149
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFL-TLEYAEGAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + AI + ++ +
Sbjct: 584 AFAD---PAADYATFSAGFPFEETPDQQAAIEAVRADMLAGQP 623
>gi|296169893|ref|ZP_06851505.1| transcription-repair coupling factor [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895449|gb|EFG75151.1| transcription-repair coupling factor [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 1201
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 58/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ +
Sbjct: 487 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTVGGARREYLVLEYASSKRGGGSD 546
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 547 KLYVPMDSLDQLSRY--------------VGGQAPALSKLGGSDWANTKTKARRAVREIA 592
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+V + + P +++ +++ + ++ + AI ++ ++
Sbjct: 593 GELVALYAKRQASPGHAFAPDTPWQAEME---DAFGFTETVDQLTAITEVKADMEKPIP 648
>gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
Length = 1169
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 58/176 (32%), Gaps = 22/176 (12%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + + G+++V+ HG+G +++ + E+ V+ + L+V
Sbjct: 484 KRRRAASKQVDPNKLQPGDYVVHRQHGIGKFLKLESLTINRETREYLVLQYA--DGLLRV 541
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
V + L R A + + + S AI ++
Sbjct: 542 AVDQLGS---------------LSRFRATAEQAPELNKMTGKA-WERTKSKVRKAIRKIA 585
Query: 120 RDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL + +Q + + + + + +AI ++ ++ S
Sbjct: 586 VDLLQLYAQRSQQQGFAFPLDQPWQEELEESFPYQPTPDQVKAIQDVKRDMESDRP 641
>gi|225570940|ref|ZP_03779963.1| hypothetical protein CLOHYLEM_07044 [Clostridium hylemonae DSM
15053]
gi|225160402|gb|EEG73021.1| hypothetical protein CLOHYLEM_07044 [Clostridium hylemonae DSM
15053]
Length = 169
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 54/169 (31%), Gaps = 7/169 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
F GE+IV +GV + E + G + ++ + D + I MR
Sbjct: 1 MFDVGEYIVCGRYGVCRVKETGPVHITGAPRKRLYYTLVPVYDSNSRAYVPVDSEKIIMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
+ + + + +R + + D ++++ ++R
Sbjct: 61 PVISGEQANELVDHINDIDALWIQDEKKREAAFKEALYKCDCREWIKIIKTIYRRRQDRI 120
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + A +R+ E+A + + E I +
Sbjct: 121 AQGKKVTAGDERYLHMAQDRLYGELAVALGMKKEEVEAYIIGRAEAPEP 169
>gi|309379212|emb|CBX22169.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 1164
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 475 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 533
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 534 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 580
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 581 AAELLNLYARRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 637
>gi|15677148|ref|NP_274301.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
gi|7226520|gb|AAF41657.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
Length = 1379
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 692 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 750
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 751 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 797
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 798 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 854
>gi|325200091|gb|ADY95546.1| transcription-repair coupling factor [Neisseria meningitidis
H44/76]
Length = 1379
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 692 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 750
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 751 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 797
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 798 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 854
>gi|148273452|ref|YP_001223013.1| putative transcription-repair coupling factor [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147831382|emb|CAN02340.1| putative transcription-repair coupling factor [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 1210
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ ++K + G+H+V+ HG+G E+ ++EV+ + + ++
Sbjct: 504 LATRRKNVVDPLQLKPGDHVVHTTHGIGRFVELTQREVSSGGRNAVKTRREY--LVIEYA 561
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G + ++ + V G+ M K E+V+
Sbjct: 562 PSKRGYPGDKLFVPTDQLDLLSRYVGGEEPALSKMGGSDWAAAKGKARRAVRDIAVELVK 621
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S+ ++ + + + + I+ ++ ++ S
Sbjct: 622 LYSARMASRGHSFPPDTPWQR---ELEEAFPFMETPDQLTVIDEVKRDMESPIP 672
>gi|319787478|ref|YP_004146953.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
11-1]
gi|317465990|gb|ADV27722.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
11-1]
Length = 1166
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 48/163 (29%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + ++ GM EF I + K L VPV + +
Sbjct: 495 ELTEGAPIVHEDHGVGRYRGLVAMDIGGMPGEFLDIEYAKGD-RLYVPVTQLHLVSRYSG 553
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G E K + +V +L ++ +
Sbjct: 554 ASPETAP--LHSLGG--------------EQWTKAKRKAQEKVRDVAAELLEIQARRQAR 597
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI + +L S
Sbjct: 598 AGLALDIDRAMYEGFAAGFPFEETPDQHAAIEAVLRDLQSSQP 640
>gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus
DSM 8271]
gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus
DSM 8271]
Length = 1182
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 65/175 (37%), Gaps = 19/175 (10%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
Q+++ + G+ +V+ HG+G I++ V G++ ++F I + + L
Sbjct: 486 KAQRQNKDEMLLFADLKPGDFVVHLYHGIGKFIGIEKIGVDGIEKDYFAIKYAGED-KLY 544
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VP+ + + ++A + KL + + +++ S ++
Sbjct: 545 VPLDQIQLLQKYLGADADRAPKLNKLNGNE-----------WNKAKSRVRSAVKEMAIDL 593
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + +S +S ++ + + + ++I I+ ++
Sbjct: 594 IELYAKRESSKGYVFSADNHWQ---KEFEDKFPYEETADQLQSIQEIKKDMMKSK 645
>gi|90579501|ref|ZP_01235310.1| putative transcription-repair coupling factor [Vibrio angustum S14]
gi|90439075|gb|EAS64257.1| putative transcription-repair coupling factor [Vibrio angustum S14]
Length = 1153
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E G+K E +V + L VPV I
Sbjct: 482 ELQVGQPVVHIDHGIGRYQGLQTLEAGGIKTE-YVTLEYQGGAKLYVPVASLHLISSYSG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + G E +K + +V +L ++ E
Sbjct: 541 GAEDTAP--IHKLGG--------------ETWSKARRKAAEKVRDVAAELLDVYAKRELK 584
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + A + + AIN + ++
Sbjct: 585 PGVKFTLDREAYAEFSAGFPYEETYDQALAINAVLSDMCQTK 626
>gi|229828411|ref|ZP_04454480.1| hypothetical protein GCWU000342_00472 [Shuttleworthia satelles DSM
14600]
gi|229793005|gb|EEP29119.1| hypothetical protein GCWU000342_00472 [Shuttleworthia satelles DSM
14600]
Length = 224
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/184 (11%), Positives = 69/184 (37%), Gaps = 7/184 (3%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGM--KLEFFVIAFDKDKMCLK 58
+T ++ + + + +V+ A GV + I Q++ G + E++ + +
Sbjct: 29 VTAPARKPVKMKRYCVDDFLVHEASGVCQVKAIIRQDLMGTGTEREYYDLNPVFENRSHV 88
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+ ++ +R +S ++ + ++ +RA+ Y + + D + +A +
Sbjct: 89 ITPVESNRQRVRSVSSQRTMKEIFSRLADLELIEIKGDRQRAEYYRQILLNQDPMEMARL 148
Query: 119 VRDLHRTDSQ-----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ ++ + + + + +A ++ E+A + S+ L
Sbjct: 149 IKTIYYRNHMRIAQGKKTMSQDERTMSAAKKKLFDEMAFILKDSQEALEIKFCEILDRDD 208
Query: 174 SKTE 177
E
Sbjct: 209 PSRE 212
>gi|296116131|ref|ZP_06834749.1| transcription-repair coupling factor [Gluconacetobacter hansenii
ATCC 23769]
gi|295977237|gb|EFG83997.1| transcription-repair coupling factor [Gluconacetobacter hansenii
ATCC 23769]
Length = 1157
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K+ A G+ +V+ +G+G ++ V + + L
Sbjct: 468 PRRRKKADQFIAEASEIAEGDLVVHQDYGIGRYDGLETIGVGSAPHDCLRL-IYDGNEKL 526
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + AL + G W R AK+ E
Sbjct: 527 FLPVENIELLSR---FGSEQTGVALDKLGG------VSWQSR----KAKMKQRIRDMAGE 573
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + + V + + AI + +++S
Sbjct: 574 LIRTAAARALREAPALTPAEGL---WDEFCARFPFVETEDQSRAIADVLDDMASGRP 627
>gi|25027590|ref|NP_737644.1| putative transcription-repair coupling factor [Corynebacterium
efficiens YS-314]
gi|23492872|dbj|BAC17844.1| putative transcription-repair coupling factor [Corynebacterium
efficiens YS-314]
Length = 1218
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/173 (10%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+ +V+ HG+G ++ E+ ++ ++ + L+
Sbjct: 496 PARRRNKVDPLALTPGDLVVHETHGIGRFIKMTERTISTGD-----ETSRREYIVLEYAP 550
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G + ++ + V G+ M + K + E+V
Sbjct: 551 SKRGQPGDQLYVPMDSLDMLSRYVGGEKPTLSKMGGSDWKNTKKKARAAVREIAGELVEL 610
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + P ++ ++ + V + + AI+ ++ ++
Sbjct: 611 YAKRQAAPGHAFGPDTPWQKEME---DNFPYVETEDQMLAIDAVKEDMEKPVP 660
>gi|297183227|gb|ADI19367.1| transcription-repair coupling factor (superfamily II helicase)
[uncultured Chloroflexi bacterium HF0500_03M05]
Length = 1192
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 13/167 (7%), Positives = 49/167 (29%), Gaps = 16/167 (9%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ + G+++V+ HG+G + E+ ++ + + L VP+ +
Sbjct: 491 ETILSELNPGDYVVHVEHGIGRFVGTGHIPRDEVDREYLILQYAESD-RLYVPMDHLDRV 549
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
+ + ++ + ++ +E++ +
Sbjct: 550 TAYIA------------PMDRTPTLTRLGTQMWKRTKERVAQSTHEMASELLSLYATREF 597
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + AI I+ ++
Sbjct: 598 AEGVAFPSDTPWQI---ELEDSFPYEETRDQQTAIAEIKTDMEQSRP 641
>gi|254670469|emb|CBA06145.1| transcription-repair coupling factor [Neisseria meningitidis
alpha153]
Length = 1286
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 599 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTIDLGGETNEMMLLEYAG-EA 657
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 658 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 704
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 705 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 761
>gi|325067341|ref|ZP_08126014.1| transcription-repair coupling factor [Actinomyces oris K20]
Length = 619
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ +R G+ +V+ HGVG E+ + V G + ++ + ++
Sbjct: 1 ARRTRRSVDPLSLHAGDLVVHAQHGVGRFIELSRRTVGGA-----RSSATREYLVIEYAP 55
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G R L +++ K V G + M + +K E+VR
Sbjct: 56 SKRGQPGDRLLVPTDALDQVTKYVGGDSPALSKMGGADWAKTKSKARKAVREIAGELVRL 115
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S +++ + + + I+ ++ ++
Sbjct: 116 YAARAATTGHAFSPDTPWQT---ELEEAFPYTETPDQLSTIDEVKADMEKAQP 165
>gi|239993080|ref|ZP_04713604.1| transcription-repair coupling factor [Alteromonas macleodii ATCC
27126]
Length = 984
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG ++ + G+ E+ + L VPV I
Sbjct: 313 ELSIGQPVVHLDHGVGRYLGLQTLDAGGVATEYL-CIEYAKQSKLYVPVASLHLISRYTG 371
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+A + + W++ Q+ K+ +A + D++ +
Sbjct: 372 GDADSAP--------VSALGSDAWTKAKQKAAEKVR-----DVAAELLDVYARRAAKPGF 418
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AI + ++ S S+
Sbjct: 419 AYKINWDD--YQAFSDSFPFEETPDQAQAIAAVMHDMGSPSA 458
>gi|319896952|ref|YP_004135147.1| transcription-repair coupling factor [Haemophilus influenzae F3031]
gi|317432456|emb|CBY80811.1| transcription-repair coupling factor [Haemophilus influenzae F3031]
Length = 1146
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV I + + + K
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDESAP------------LHKLGNEAWAKSCQKAAEKIRDV 566
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE++ + +++ ++ + + + + AIN + ++ +
Sbjct: 567 AAELLDVYAQREAKKGFAF---KYDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKA 623
>gi|94499512|ref|ZP_01306049.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
gi|94428266|gb|EAT13239.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
Length = 1143
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 24/181 (13%)
Query: 2 TFQQKRDAMRQG--------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
+ +QK++ + G +V+ HGVG ++ + G EF V
Sbjct: 454 SRRQKQEKDQSENVIRNLTELTPGAAVVHIDHGVGRYRGLETLDAGGEINEF-VTLEYAG 512
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L VPV I ++ ++ WS + ++ KI
Sbjct: 513 GAKLYVPVASLHLISRYSGADTEIAP--------LHKLGTDKWSAQRRKALEKIRDTAAE 564
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + +++P +S + + + +AIN + ++ +
Sbjct: 565 LLEVYAK----REAKPGHGFS---YPRDEYELFAADFPFEETADQKQAINAVVTDMMKAN 617
Query: 174 S 174
Sbjct: 618 P 618
>gi|187928984|ref|YP_001899471.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
gi|187725874|gb|ACD27039.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
Length = 1143
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 48/181 (26%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ + EF +
Sbjct: 459 RRKQEQATAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLD-YDKG 517
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 518 SKLYVPVHQLHVISRYSGADPETAP--LHSLGSGQ--------------WEKAKRKAAQQ 561
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + AI + +++S
Sbjct: 562 IRDTAAELLNLYARRALRQGFAFPLTPEDYATFAESFGFEETPDQAAAIAAVIADMTSGK 621
Query: 174 S 174
Sbjct: 622 P 622
>gi|118619716|ref|YP_908048.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
ulcerans Agy99]
gi|118571826|gb|ABL06577.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
ulcerans Agy99]
Length = 1222
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 58/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ +
Sbjct: 502 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASARRGGGSD 561
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 562 KLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWTNTKTKARKAVREIA 607
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+V + + P +++ +++ + ++ + AI ++ ++
Sbjct: 608 GELVALYAKRQASPGHAFAPDTPWQAEME---DAFGFTETVDQLTAITEVKRDMEKSIP 663
>gi|26247258|ref|NP_753298.1| transcription-repair coupling factor [Escherichia coli CFT073]
gi|26107659|gb|AAN79858.1|AE016759_132 Transcription-repair coupling factor [Escherichia coli CFT073]
Length = 951
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 497 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 556 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 604 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 642
>gi|325202005|gb|ADY97459.1| transcription-repair coupling factor [Neisseria meningitidis
M01-240149]
gi|325208243|gb|ADZ03695.1| transcription-repair coupling factor [Neisseria meningitidis
NZ-05/33]
Length = 1227
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + + G E ++ + +
Sbjct: 540 RRKKHAAVSDDLLRDLAEINIGDPVVHEEHGIGRYMGLITMNLGGETNEMMLLEYAG-EA 598
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 599 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 645
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 646 AAELLNLYARRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 702
>gi|315606044|ref|ZP_07881075.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
180 str. F0310]
gi|315312326|gb|EFU60412.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
180 str. F0310]
Length = 1194
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/183 (12%), Positives = 57/183 (31%), Gaps = 26/183 (14%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD----- 51
M ++++ G++IV+ HG+G E+ + + ++ VI +
Sbjct: 502 MPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSRSIGRGDAASTRDYLVIEYAPSKRG 561
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VP I S+ + + G A +T + +
Sbjct: 562 QPADRLFVPTDSLDQISKYTGSDEPSLTKM-----GGADWAKTKARAKKAVNE------- 609
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E++R ++ ++ + V + + I+ ++ ++
Sbjct: 610 --VAKELIRLYAVRQQTKGHAFGPDTPWQR---ELEDAFPYVETPDQLVTIDEVKADMEK 664
Query: 172 KSS 174
Sbjct: 665 AVP 667
>gi|240169894|ref|ZP_04748553.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
kansasii ATCC 12478]
Length = 1238
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 58/181 (32%), Gaps = 24/181 (13%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK------ 54
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 516 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASSKRGGQNS 575
Query: 55 -MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L VP+ + V G+A + K
Sbjct: 576 TDKLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARRAVRE 621
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+V + + +++ +++ + ++ + AI ++ ++
Sbjct: 622 IAGELVSLYAKRQASSGHAFAPDTPWQAEME---DAFGFTETVDQLTAIQEVKADMEKPI 678
Query: 174 S 174
Sbjct: 679 P 679
>gi|226943575|ref|YP_002798648.1| transcription-repair coupling factor [Azotobacter vinelandii DJ]
gi|226718502|gb|ACO77673.1| transcription-repair coupling factor [Azotobacter vinelandii DJ]
Length = 1149
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HG+G + EV G EF + ++ L VPV I
Sbjct: 477 TELREGAPVVHIDHGIGRYRGLVTLEVEGQAAEFL-MLEYAEEAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S + Q K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSEQWQRAKRKAAEQVRDVAAELLDIYARRAARAGF 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + AI+ + ++ +
Sbjct: 584 AFKD---PATDYETFSASFPFEETPDQQAAIDAVRTDMLAPRP 623
>gi|259507006|ref|ZP_05749906.1| transcription-repair coupling factor [Corynebacterium efficiens
YS-314]
gi|259165458|gb|EEW50012.1| transcription-repair coupling factor [Corynebacterium efficiens
YS-314]
Length = 1215
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/173 (10%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+ +V+ HG+G ++ E+ ++ ++ + L+
Sbjct: 493 PARRRNKVDPLALTPGDLVVHETHGIGRFIKMTERTISTGD-----ETSRREYIVLEYAP 547
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G + ++ + V G+ M + K + E+V
Sbjct: 548 SKRGQPGDQLYVPMDSLDMLSRYVGGEKPTLSKMGGSDWKNTKKKARAAVREIAGELVEL 607
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + P ++ ++ + V + + AI+ ++ ++
Sbjct: 608 YAKRQAAPGHAFGPDTPWQKEME---DNFPYVETEDQMLAIDAVKEDMEKPVP 657
>gi|241663171|ref|YP_002981531.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
gi|240865198|gb|ACS62859.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
Length = 1143
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 48/181 (26%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ + EF +
Sbjct: 459 RRKQEQATAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLD-YDKG 517
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 518 SKLYVPVHQLHVISRYSGADPETAP--LHSLGSGQ--------------WEKAKRKAAQQ 561
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + AI + +++S
Sbjct: 562 IRDTAAELLNLYARRALRQGFAFPLTPEDYATFAESFGFEETPDQAAAIAAVIADMTSGK 621
Query: 174 S 174
Sbjct: 622 P 622
>gi|160898289|ref|YP_001563871.1| transcription-repair coupling factor [Delftia acidovorans SPH-1]
gi|160363873|gb|ABX35486.1| transcription-repair coupling factor [Delftia acidovorans SPH-1]
Length = 1164
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/188 (9%), Positives = 50/188 (26%), Gaps = 32/188 (17%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------FFV 47
+++++ + G+ +V+ HG+G + ++ + F+
Sbjct: 460 RRRRQEQVSDVEALIKDLSELKVGDPVVHSDHGIGRYQGLVNMDMGQKNPDGTPAVQEFL 519
Query: 48 IAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKI 107
L VPV + I + L + G K
Sbjct: 520 HLEYAGNAVLYVPVSQLQLISRYTGVSPE--DAPLHKLGGTQ--------------WEKA 563
Query: 108 NSGDLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIE 166
+ + +L ++ + + + + + AI+ +
Sbjct: 564 KRKAAEQVRDSAAELLNIYARRAARQGHAFRYSPQDYEQFANDFGFEETADQRAAIHAVI 623
Query: 167 VNLSSKSS 174
++ S
Sbjct: 624 QDMISPQP 631
>gi|17989033|ref|NP_541666.1| transcription-repair coupling factor [Brucella melitensis bv. 1
str. 16M]
gi|17984874|gb|AAL53930.1| transcription-repair coupling factor [Brucella melitensis bv. 1
str. 16M]
Length = 1170
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPGGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|124025758|ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. NATL1A]
gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
str. NATL1A]
Length = 1167
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/176 (11%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K+ ++ + G+++V+ HG+G +I++ + G ++ VI + L
Sbjct: 483 RRRKQSQSKKIDPNKMKPGDYVVHRNHGIGLFQKIEKLNINGESRDYLVIKY--MDGKLS 540
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + +G + S A K + + K ++
Sbjct: 541 VAADQLGSLGRYRSSNA------------KTPTISKLGGANWNKIKEKAKKSVKKVAIDL 588
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + ++S + + + A + ++ ++ S+
Sbjct: 589 IKLYAERSKEKGYKFPCDGPWQS---ELEDSFPYALTPDQATATSQVKSDMESEKP 641
>gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
2782]
gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
2782]
Length = 1174
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ +V+ AHG+G I++ V +K ++ I ++ L +P +
Sbjct: 497 KIKAFSDLNVGDFVVHQAHGIGQYIGIEKLSVGEIKRDYLKI-RYQEGDFLYIPTNQLDL 555
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GK + + ++ AE+++ +
Sbjct: 556 LQKYIGSE------------GKTPKVNKLGGTEWAKTKNRVKESLQQLAAELIKLYAQRQ 603
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
S ++ E +++ + + + + I+ I+ ++ S+
Sbjct: 604 SAKGHAFCEDTVWQRQFEEL---FPYQETDDQLKCIDEIKKDMESER 647
>gi|254976584|ref|ZP_05273056.1| putative regulatory protein [Clostridium difficile QCD-66c26]
gi|255093968|ref|ZP_05323446.1| putative regulatory protein [Clostridium difficile CIP 107932]
gi|255315720|ref|ZP_05357303.1| putative regulatory protein [Clostridium difficile QCD-76w55]
gi|255518381|ref|ZP_05386057.1| putative regulatory protein [Clostridium difficile QCD-97b34]
gi|255651499|ref|ZP_05398401.1| putative regulatory protein [Clostridium difficile QCD-37x79]
gi|306521319|ref|ZP_07407666.1| putative regulatory protein [Clostridium difficile QCD-32g58]
Length = 165
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 62/165 (37%), Gaps = 6/165 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKE-QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F+ ++I+Y GV + +I + G+K E++V++ + + MRK
Sbjct: 1 MFKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLSPIYSNNTVIKIPVDNEKVPMRK 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTD 126
L V + + R++++ + G + ++VR + +
Sbjct: 61 LLSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVKS 120
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ ++ + + A + E A + IS E + I ++
Sbjct: 121 IGKKTHQADDNIMKEAERLLSEEFATILDISPNEVSSYISSHIPQ 165
>gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM
16795]
gi|164602079|gb|EDQ95544.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM
16795]
Length = 1131
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 60/162 (37%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ G+G T I++ V G+K ++ I + L VP+ + +
Sbjct: 492 DLKIGDYVVHENSGIGRYTGIEQISVNGIKKDYLKI-IYQGGDNLYVPIDQMDKVQKYIG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S+A V+ ++ K + I ++ +DL ++ E+
Sbjct: 551 SDAEKVKL----------------NKLGTNEWTKAKAKVKREIEDMTKDLVELYAKREQI 594
Query: 133 YSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + + +AI + ++ S
Sbjct: 595 KGYKFSKDTVWQKEFESMFPYEETEDQLKAIKETKKDMESSK 636
>gi|262275596|ref|ZP_06053405.1| transcription-repair coupling factor [Grimontia hollisae CIP
101886]
gi|262219404|gb|EEY70720.1| transcription-repair coupling factor [Grimontia hollisae CIP
101886]
Length = 1154
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 16/160 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG ++ E G+ E+ + L VPV I
Sbjct: 481 ELQIGQPVVHLEHGVGRYLGLQTLEAGGITTEYM-TLEYQQGAKLYVPVASLHLISRYSG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A ++ + AE++ + ++P +
Sbjct: 540 GAEESAP--LHKLGGEA----------WEKARKRAAEKVRDVAAELLDVYAKRATKPGFA 587
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + A + + +AIN + ++
Sbjct: 588 FKHDR---EAYLDFCAGFPFEETADQKQAINAVLSDMCQP 624
>gi|253989203|ref|YP_003040559.1| transcription-repair coupling factor [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253780653|emb|CAQ83815.1| transcription-repair coupling factor (trcf) [Photorhabdus
asymbiotica]
Length = 1148
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++++ L VPV I
Sbjct: 475 ELRPGQPVVHLEHGVGRYQGLTSLEAGGIKAEYLILSYAG-DDKLYVPVSSLHLISRYAG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G E +K + +V +L +
Sbjct: 534 GADE--NAPLHKLGG--------------EVWSKARQKAAEKVRDVAAELLDIYAHRAVK 577
Query: 133 YSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++ + + + +AIN + ++
Sbjct: 578 PGFAFKHDWEQYQLFCQSFPFETTPDQEQAINAVLDDMCQP 618
>gi|120405727|ref|YP_955556.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
PYR-1]
gi|119958545|gb|ABM15550.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
PYR-1]
Length = 1212
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 57/179 (31%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ + G + E+ V+ +
Sbjct: 504 LAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVIGGARREYLVLEYASAKRGGGSD 563
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 564 RLYVPMDSLDQLSRY--------------VGGEAPTLSRLGGSDWANTKTKARKAVREIA 609
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE+V + + +++ ++ + ++ + AI ++ ++
Sbjct: 610 AELVALYAKRQASAGHAFAPDTPWQREME---DAFGFTETVDQLTAITEVKSDMEKPVP 665
>gi|94310893|ref|YP_584103.1| transcription-repair coupling factor [Cupriavidus metallidurans
CH34]
gi|93354745|gb|ABF08834.1| transcription-repair coupling factor [Cupriavidus metallidurans
CH34]
Length = 1150
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/181 (11%), Positives = 51/181 (28%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ EF +
Sbjct: 466 RRKQEQASTVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVTLDMGQGDEEFLHLD-YDKG 524
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ + + RRA +
Sbjct: 525 SKLYVPVHQLHVISRYSGADPETAP-----LHSLGTGQWDKAKRRAAQ-----------Q 568
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + + AI + +++S
Sbjct: 569 IRDTAAELLNLYARRALREGFAFPLQPKDYEAFAESFGFEETPDQAAAIAAVIADMTSGK 628
Query: 174 S 174
Sbjct: 629 P 629
>gi|157961369|ref|YP_001501403.1| transcription-repair coupling factor [Shewanella pealeana ATCC
700345]
gi|157846369|gb|ABV86868.1| transcription-repair coupling factor [Shewanella pealeana ATCC
700345]
Length = 1157
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV ++ + G+ E+ V+ L VPV I +
Sbjct: 484 ELKVGQPIVHLDHGVARYQGLETLDTGGLVAEYLVLE-YSGGDKLYVPVAALNLISRYSV 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ E AK + I +V +L ++ +
Sbjct: 543 GPDE----------------EATLNKLGNESWAKAKKKAVEKIRDVAAELLDVYARRQAR 586
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E ++ + ++ + AI + ++ S ++
Sbjct: 587 PGEACRIDLEEYAQFANSFPYEETVDQETAIEAVLEDMRSPTA 629
>gi|325140492|gb|EGC63013.1| transcription-repair coupling factor [Neisseria meningitidis CU385]
Length = 1305
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 618 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 676
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 677 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 723
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 724 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 780
>gi|315126314|ref|YP_004068317.1| transcription-repair ATP-dependent coupling factor
[Pseudoalteromonas sp. SM9913]
gi|315014828|gb|ADT68166.1| transcription-repair ATP-dependent coupling factor
[Pseudoalteromonas sp. SM9913]
Length = 1157
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG ++ + AG+ EF V + L VPV +
Sbjct: 485 ELKEGQPVVHLDHGVGRYQGLQTIDAAGVVTEF-VTIIYAGEAKLYVPVSALHMLSRY-- 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S L + A K + +V +L +Q +
Sbjct: 542 SGGEEASAPLHKLGSDA--------------WDKAKKRAAEKVRDVAAELLDIYAQRQAK 587
Query: 133 YSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A + + + AI + ++ SK +
Sbjct: 588 PGNKFTLDGQAYRQFSDSFPFEETDDQRNAIEAVLGDMQSKQA 630
>gi|325204285|gb|ADY99738.1| transcription-repair coupling factor [Neisseria meningitidis
M01-240355]
Length = 1374
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ +
Sbjct: 687 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLE-YSGEA 745
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 746 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 792
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 793 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 849
>gi|298528164|ref|ZP_07015568.1| transcription-repair coupling factor [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511816|gb|EFI35718.1| transcription-repair coupling factor [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1144
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 18/161 (11%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
G+ +V+ +G+G ++ ++ V+ + L VPV + + K
Sbjct: 477 EPGDMLVHRDYGLGRFGGLERISTDTQASDYLVLYYAN-DDKLYVPVDRFSLVQKYKG-- 533
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ AL + G +K + AI ++ +DL +Q +
Sbjct: 534 PDGADPALDKLGG--------------ANWSKTKNRVRKAIQKIAKDLVDMYAQRKVVKG 579
Query: 135 ERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + +AI + ++ S
Sbjct: 580 YSYSPPEELYQEFANTFGFQETPDQEQAIREVMQDMESDEP 620
>gi|312959638|ref|ZP_07774155.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
gi|311286355|gb|EFQ64919.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
Length = 1149
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG ++ E+ EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFL-TMEYAEGAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ A + + I + ++ +
Sbjct: 584 AFAD---PKADYATFSAGFAFEETPDQQTTIEAVRADMLAPKP 623
>gi|303231983|ref|ZP_07318691.1| transcription-repair coupling factor [Veillonella atypica
ACS-049-V-Sch6]
gi|302513412|gb|EFL55446.1| transcription-repair coupling factor [Veillonella atypica
ACS-049-V-Sch6]
Length = 1096
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + G+++V+ HG+G +K E G+ ++ IA+ L +P
Sbjct: 413 PKKGQEINYFTDLSVGDYVVHSMHGIGKYVGLKTIETEGIHRDYIEIAYAGTD-RLYLPA 471
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ +E M ++ K ++V
Sbjct: 472 SNLDQLQKYIGNEGDV------------PRIHKMGGSDWRKAVTKTQKSIDDLADKLVEL 519
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ Q ++ + + +A I+ ++ +
Sbjct: 520 YAKREITEGFAFLPDQPWQ---QEFEDAFPYEETEDQLQATREIKESMERPTP 569
>gi|77411312|ref|ZP_00787661.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
gi|77162648|gb|EAO73610.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
Length = 1165
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HGVG + E+ G+ ++ ++ + +PV + +
Sbjct: 487 ELSVGDYVVHNVHGVGKFLGXETIEIQGIHRDYL-TIQYQNADRISIPVEQIELLTKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK T+ R ++ ++ ++++ +
Sbjct: 546 A------------DGKEPKINTLNDGRFKKAKQRVAKQVEDIADDLLKLYAERSQLQGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + N + A V + + +I I+ ++
Sbjct: 594 FSPDDNMQ---NDFDNDFAYVETEDQLRSIKEIKQDMEGNRP 632
>gi|227538907|ref|ZP_03968956.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241416|gb|EEI91431.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33300]
Length = 1112
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
Q + + G++I + HGVG +++ +V G E + + + + L V +
Sbjct: 425 TQAITLKELRDLKPGDYITHIDHGVGKYAGLEKVDVNGKSQEMIRLVYADNDL-LYVNIN 483
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I E G + + ++ ++++
Sbjct: 484 SLNRISKYSGKE------------GTVPKMNKLGTDTWEKLKKTTKRKVKDIARDLIKLY 531
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Q ++S + N + ++ + +A ++ ++ S
Sbjct: 532 AKRKAQTGNAFSPDTYLQ---NELEASFIYEDTPDQEKATADVKRDMESPHP 580
>gi|221632687|ref|YP_002521908.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
5159]
gi|221157121|gb|ACM06248.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
5159]
Length = 1165
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/159 (11%), Positives = 54/159 (33%), Gaps = 17/159 (10%)
Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G ++V+ HG+ + + G+ E+ ++ + + L +PV + I + + +
Sbjct: 493 PGAYVVHVDHGIARYGGLVHLTINGVHREYLLLEYA-ENDRLYLPVDQLDRITLYESLDG 551
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
R+ WSR + + E+++ ++ P ++
Sbjct: 552 E---------PKLTRLGSPEWSRVKRRVREAVR----ELAFELLQLYAAREAAPGIAFGP 598
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + AI ++ ++
Sbjct: 599 DTQWDR---ELEESFPYEETPDQWRAIQEVKADMERPRP 634
>gi|332530190|ref|ZP_08406138.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
19624]
gi|332040382|gb|EGI76760.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
19624]
Length = 1177
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/187 (12%), Positives = 58/187 (31%), Gaps = 30/187 (16%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------FFV 47
++K++ G+ +V+ +HG+G + +V + F+
Sbjct: 473 RRKKQEQVSDVESLIKDLSELNVGDPVVHASHGIGRYRGLINMDVGAKNPDGSPAPQEFL 532
Query: 48 IAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKI 107
D+ L VPV + I A + S + ++ K
Sbjct: 533 HLEYADQAVLYVPVSQLQLISRYTGVSAD------------EAPLHKLGSGQWEKAKRKA 580
Query: 108 NSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
A AE++ R ++ ++ + + + + + AI+ +
Sbjct: 581 AQQIRDAAAELLNIYARRAAREGHAF---RFSARDYEQFANDFGFEETADQKAAIHAVIQ 637
Query: 168 NLSSKSS 174
++ S
Sbjct: 638 DMISPQP 644
>gi|121634996|ref|YP_975241.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
gi|120866702|emb|CAM10454.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
gi|325138289|gb|EGC60858.1| transcription-repair coupling factor [Neisseria meningitidis
ES14902]
Length = 1375
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 688 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAG-EA 746
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 747 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 793
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 794 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 850
>gi|325142431|gb|EGC64835.1| transcription-repair coupling factor [Neisseria meningitidis
961-5945]
gi|325198436|gb|ADY93892.1| transcription-repair coupling factor [Neisseria meningitidis G2136]
Length = 1375
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 688 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAG-EA 746
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 747 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 793
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 794 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 850
>gi|229523905|ref|ZP_04413310.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis
VL426]
gi|229337486|gb|EEO02503.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis
VL426]
Length = 1157
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 483 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLECQNEAKLYVPVSSLNLISRYSG 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 542 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 585
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 586 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 628
>gi|225873674|ref|YP_002755133.1| transcription-repair coupling factor [Acidobacterium capsulatum
ATCC 51196]
gi|225794589|gb|ACO34679.1| transcription-repair coupling factor [Acidobacterium capsulatum
ATCC 51196]
Length = 1189
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 66/178 (37%), Gaps = 20/178 (11%)
Query: 2 TFQQKRDA-----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
+K + G+++V+ HG+ +KE G LEF ++ F ++
Sbjct: 498 PAARKSKTAAFISDFRDLAVGDYVVHVEHGIARYLGLKEIAQDGTTLEFMILEFA-EEAK 556
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VP+ + I + +E+ G A V + +++ + A++
Sbjct: 557 LYVPLTRLDLIQKYRSTES-----------GPAPVLHRLGTQQWAKTKARVKKAMQDMAD 605
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ + + +YS ++ + + AI I+ ++ S +
Sbjct: 606 ELLKLYAQRKAAQGHAYSADNEFQR---EFEDSFDYNETDDQLSAIADIKRDMESTTP 660
>gi|254673347|emb|CBA08563.1| transcription-repair coupling factor [Neisseria meningitidis
alpha275]
Length = 1375
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 688 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAG-EA 746
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 747 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 793
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 794 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 850
>gi|325134475|gb|EGC57120.1| transcription-repair coupling factor [Neisseria meningitidis
M13399]
Length = 1305
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 618 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 676
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 677 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 723
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 724 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 780
>gi|316984071|gb|EFV63049.1| transcription-repair coupling factor [Neisseria meningitidis
H44/76]
Length = 1235
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 548 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 606
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 607 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 653
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 654 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 710
>gi|283784907|ref|YP_003364772.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
gi|282948361|emb|CBG87947.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
Length = 1148
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ ++ + L VPV I
Sbjct: 476 ELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYAG-DAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|88813291|ref|ZP_01128530.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
gi|88789463|gb|EAR20591.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
Length = 1146
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G +V+ HGVG ++ EV G+ EF I + L PV +
Sbjct: 471 DLTDLHLGTPVVHKDHGVGRYRGLQIIEVGGITTEFLTIEYAGGD-KLYAPVSALHLVTR 529
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ L + G + + + AE++ R +
Sbjct: 530 YTGMDPEHAP--LHRLGG----------EQWERACRRAAERARDVAAELLEIYARRAAAQ 577
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y S + + + +AI+ + +L S
Sbjct: 578 GHAYC---FPRSDYEAFSSQFPFEETPDQQQAIDGVLSDLESSRP 619
>gi|254819273|ref|ZP_05224274.1| hypothetical protein MintA_05066 [Mycobacterium intracellulare ATCC
13950]
Length = 1200
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 8/174 (4%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 484 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASSKNRGGAA 543
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+++ + V G+A + K E+V
Sbjct: 544 KNTDKL-----YVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKTKARRAVREIAGELVS 598
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + P ++ +++ + ++ + AI ++ ++
Sbjct: 599 LYAKRQASPGHAFGPDTPWQAEME---DAFGYTETVDQLTAITEVKGDMEKPIP 649
>gi|255656959|ref|ZP_05402368.1| putative regulatory protein [Clostridium difficile QCD-23m63]
Length = 165
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 61/165 (36%), Gaps = 6/165 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKE-QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F+ ++I+Y GV + +I + G+K E++V+ + + MRK
Sbjct: 1 MFKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLNPIYSNNTIIKIPVDNEKVPMRK 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTD 126
L V + + R++++ + G + ++VR + +
Sbjct: 61 LLSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVKS 120
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ ++ + + A + E A + IS E + I ++
Sbjct: 121 IGKKTHQADDNIMKEAERLLNEEFATILDISPNEVSSYISSHIPQ 165
>gi|239627020|ref|ZP_04670051.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517166|gb|EEQ57032.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 166
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 5/161 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ I Y A GV + I + + + ++ + + + MR +
Sbjct: 1 MFEKGDFIFYGAVGVCQVDGISKPDFSDNDKLYYRLIPKFEPNRSICIPVDTTKVLMRCI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE-- 130
+ + R Y SG +A +++++ + + +
Sbjct: 61 MTRREAQNFILSWPNVQCKGYRNDKERPLIYKQIFQSGSCTELAAMIKEILQMEQSRKSK 120
Query: 131 ---KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
+ ER ++A + E+AA I I
Sbjct: 121 GNALNIRERDGVKTARKLLFGELAAALDIGPDMVPAYIHNV 161
>gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens
MI-1]
gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens
MI-1]
Length = 1169
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/179 (10%), Positives = 61/179 (34%), Gaps = 23/179 (12%)
Query: 3 FQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
+K+ + + G+++V+ HG+G + ++ ++ ++ + + +
Sbjct: 485 KARKQRSRPDAKMEPLADLKAGDYVVHVNHGIGRYLGVITLDIGALQKDYLQLQYAGED- 543
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP + + +E+ + L + G + AK+
Sbjct: 544 KLYVPTDQVGMLQKYLGAESDHPK--LSRLGGTE----------WSKAKAKVREAVKDMA 591
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E++ + ++S+ +++ + + + AI ++ ++
Sbjct: 592 DELLALYASRQTVRGHAFSKDMPWQAEFEAL---FPYEETPDQLRAIGEVKQDMEKVRP 647
>gi|119356706|ref|YP_911350.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
DSM 266]
gi|119354055|gb|ABL64926.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
DSM 266]
Length = 1127
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q + G+++V+ +G+G ++ V + E V+ + L V V +
Sbjct: 425 DLQKLKVGDYVVHENYGIGRFKTLETISVGNSEQEC-VLVEYEGGDQLFVNVQNINLLSK 483
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
SE + +++ + W + + K+ +++ +
Sbjct: 484 YTASEGS--------LPSLSKLGSSKWGAKKDKVRRKLR----DIAINLIKIYAKRKMTE 531
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + +AI ++ ++ +
Sbjct: 532 GFACCADTIFTR---EFEASFVFDETPDQLKAIEEVKKDMQASHP 573
>gi|256059228|ref|ZP_05449434.1| transcription-repair coupling factor [Brucella neotomae 5K33]
gi|261323178|ref|ZP_05962375.1| transcription-repair coupling factor [Brucella neotomae 5K33]
gi|261299158|gb|EEY02655.1| transcription-repair coupling factor [Brucella neotomae 5K33]
Length = 1170
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 498 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGALHDCLEIHYAG-DDRLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 557 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 604 GAPVMTPPDGL---YAEFAARFPYDETDDQLTAIEAVADDLAQGKP 646
>gi|300770435|ref|ZP_07080314.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762911|gb|EFK59728.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33861]
Length = 1112
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
Q + + G++I + HGVG +++ +V G E + + + + L V +
Sbjct: 425 TQAITLKELRDLKPGDYITHIDHGVGKYAGLEKVDVNGKSQEMIRLVYADNDL-LYVNIN 483
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I E G + + ++ ++++
Sbjct: 484 SLNRISKYSGKE------------GAVPKMNKLGTDTWEKLKKTTKRKVKDIARDLIKLY 531
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Q ++S + N + ++ + +A ++ ++ S
Sbjct: 532 AKRKAQTGNAFSPDTYLQ---NELEASFIYEDTPDQEKATADVKRDMESPHP 580
>gi|120602306|ref|YP_966706.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
gi|120562535|gb|ABM28279.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
gi|311233705|gb|ADP86559.1| transcription-repair coupling factor [Desulfovibrio vulgaris RCH1]
Length = 1159
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+G + G+ +V+ +GV ++ ++ G+ +F ++ + L +PV + +
Sbjct: 484 KHEGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAG-DDRLYLPVDRLSLVQR 542
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K + + +L + G A Q K A++V
Sbjct: 543 FKGA--DDTKPSLDRLGGGA----------WQSSKDKARKAIEKIAADLVEMYAYRKIAK 590
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + + AI + ++
Sbjct: 591 GYTYGPIGEL---YREFEASFGFEETPDQARAIQDVLEDMDKPVP 632
>gi|52424271|ref|YP_087408.1| Mfd protein [Mannheimia succiniciproducens MBEL55E]
gi|52306323|gb|AAU36823.1| Mfd protein [Mannheimia succiniciproducens MBEL55E]
Length = 1148
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + E AG+K E+ ++ + L VPV I
Sbjct: 480 ELKIGQPVVHLDHGVGRYGGLVTLENAGIKAEYLLLTYAN-DAKLYVPVANLHLISRYVG 538
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + AK I +V +L +Q E
Sbjct: 539 GSEETA----------------PLHKLGSDSWAKARRKAAEKIRDVAAELLDVYAQREAQ 582
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + + + AIN + ++ +
Sbjct: 583 KGFAFHYNREEFMQFSATFPFEETHDQEAAINAVISDMCQPKA 625
>gi|46580312|ref|YP_011120.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449729|gb|AAS96379.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
Hildenborough]
Length = 1160
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+G + G+ +V+ +GV ++ ++ G+ +F ++ + L +PV + +
Sbjct: 485 KHEGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAG-DDRLYLPVDRLSLVQR 543
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K + + +L + G A Q K A++V
Sbjct: 544 FKGA--DDTKPSLDRLGGGA----------WQSSKDKARKAIEKIAADLVEMYAYRKIAK 591
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + + AI + ++
Sbjct: 592 GYTYGPIGEL---YREFEASFGFEETPDQARAIQDVLEDMDKPVP 633
>gi|221229524|ref|YP_002502940.1| putative transcription-repair coupling factor [Mycobacterium leprae
Br4923]
gi|219932631|emb|CAR70345.1| putative transcription-repair coupling factor [Mycobacterium leprae
Br4923]
Length = 1224
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 59/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ A G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 512 LAAKRRSAADPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASNKKSKQAD 571
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 572 KLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARCAVREIA 617
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+V + + P ++ +++ + ++ + AI ++ ++
Sbjct: 618 GELVSLYAKRQASPGHAFGPDTPWQAEME---DAFGFTETVDQLTAITEVKGDMEKSVP 673
>gi|15827046|ref|NP_301309.1| transcription-repair coupling factor [Mycobacterium leprae TN]
gi|13092593|emb|CAC29760.1| putative transcription-repair coupling factor [Mycobacterium
leprae]
Length = 1224
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 59/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ A G+ +V+ HG+G E+ E+ V G + E+ V+ + K
Sbjct: 512 LAAKRRSAADPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASNKKSKQAD 571
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 572 KLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWANTKTKARCAVREIA 617
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+V + + P ++ +++ + ++ + AI ++ ++
Sbjct: 618 GELVSLYAKRQASPGHAFGPDTPWQAEME---DAFGFTETVDQLTAITEVKGDMEKSVP 673
>gi|22298495|ref|NP_681742.1| transcription-repair coupling factor [Thermosynechococcus elongatus
BP-1]
gi|22294675|dbj|BAC08504.1| transcription-repair coupling factor [Thermosynechococcus elongatus
BP-1]
Length = 1142
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+++R A +Q + G+++V+ HG+G ++ + E+ V+ + L+
Sbjct: 459 RKRRRAAAKQVDLNKLQPGDYVVHRQHGIGQFLRLETLTINNETREYLVLQYA--DGILR 516
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + +A + + A++ ++
Sbjct: 517 VAADQLNSLSRYR------------TQEDRAPQLNKLTGNTWERTKARVRKAIKKVAVDL 564
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Q ++ ++ + + + +AI ++ ++ S
Sbjct: 565 LQLYAQRAQQRGFAFPPDTPWQREME---DSFPYQPTPDQLKAIQEVKADMESDRP 617
>gi|262165996|ref|ZP_06033733.1| transcription-repair coupling factor [Vibrio mimicus VM223]
gi|262025712|gb|EEY44380.1| transcription-repair coupling factor [Vibrio mimicus VM223]
Length = 981
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 306 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMISE-YVMLEYQNEAKLYVPVSSLNLISRYSG 364
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 365 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 408
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 409 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQPKA 451
>gi|294011405|ref|YP_003544865.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
gi|292674735|dbj|BAI96253.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
Length = 1154
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 23/178 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K A G+ +V+ HG+G + + VA + V L
Sbjct: 469 AKRKKSADAFLAELATLSPGDLVVHMDHGIGRYEGLTQIPVAKAAHDC-VALEYAGGDKL 527
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + R SE+ V ++ W RR + I E
Sbjct: 528 YVPVENLE-VLSRYGSESEGV--------SLDKLGGEAWQRRKARMKER--------IRE 570
Query: 118 VVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L +T ++ + +SA V + + AI+ + +L +
Sbjct: 571 IAGELLKTAAERALRPATVAEPDSAGYPAFVDRFPYQETDDQDRAISDVIEDLGAGRP 628
>gi|300114141|ref|YP_003760716.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
gi|299540078|gb|ADJ28395.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
Length = 1158
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDAMRQ---------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M ++++++ R G +V+ HGVG ++ EV ++ EF
Sbjct: 465 MQYRRRQERTRDADAVVRDLVELSMGAPVVHEEHGVGRYLGLQTLEVGKVRTEFM-ALEY 523
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I + A + S + K
Sbjct: 524 AEGDKLYVPVSSLHLISRYTGATPE------------AAPLHKLGSSHWERAKHKARERV 571
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ + +S R + + +AI + +L+S
Sbjct: 572 RDVAAELLAIYAQRAARKKPPLPT---PDSHYAAFARAFPFEETPDQADAIQAVIADLTS 628
Query: 172 KSS 174
Sbjct: 629 DQP 631
>gi|301029579|ref|ZP_07192657.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
gi|299877574|gb|EFI85785.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
Length = 1148
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A WSR Q+ K+ +A + D++ + E
Sbjct: 535 GAEE--NAPLHKLGGDA------WSRARQKAAEKVR-----DVAAELLDIYAQRAAKEGF 581
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +AIN + ++ +
Sbjct: 582 AF--KYDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|218130501|ref|ZP_03459305.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697]
gi|317474007|ref|ZP_07933286.1| transcription-repair coupling factor [Bacteroides eggerthii
1_2_48FAA]
gi|217987380|gb|EEC53710.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697]
gi|316909849|gb|EFV31524.1| transcription-repair coupling factor [Bacteroides eggerthii
1_2_48FAA]
Length = 1128
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG T + E + ++ + V + +
Sbjct: 436 ELNQFTPGDYVVHTDHGVGRFTGLVRIPNGDTTQEVMRL-VYQNDDVVFVSIHSLHKVSK 494
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 495 YKGKE------------GEAPRLNKLGTGAWEKLKDRTKTKIKDIARDLIKLYSQRREEK 542
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + ++ + +A ++ ++ S
Sbjct: 543 GFQYSPDSFLQR---ELEASFIYEDTPDQSKATADVKADMESTRP 584
>gi|326795840|ref|YP_004313660.1| transcription-repair coupling factor [Marinomonas mediterranea
MMB-1]
gi|326546604|gb|ADZ91824.1| transcription-repair coupling factor [Marinomonas mediterranea
MMB-1]
Length = 1136
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ G + E + ++ L VPV I
Sbjct: 468 TELRLGAPVVHIDHGVGRYLGLTNLEIDGQETE-LLTLGYANEAKLYVPVSSLQLISRYT 526
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ + + + K AE++ + +++
Sbjct: 527 GADEDNAP------------LHRLGTEKWSIAKQKAAEKARDTAAELLEIYAKREARSGY 574
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ + + + AI+ + ++S+
Sbjct: 575 AFSK---PDDQYALFSASFPFEETPDQQMAIDAVIKDMSTGKP 614
>gi|307707904|ref|ZP_07644379.1| transcription-repair coupling factor [Streptococcus mitis NCTC
12261]
gi|307615969|gb|EFN95167.1| transcription-repair coupling factor [Streptococcus mitis NCTC
12261]
Length = 1167
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + V + + +I I+ ++
Sbjct: 595 FSAD---DEEQDAFDDAFPYVETDDQLRSIEEIKRDMQDSQP 633
>gi|229515266|ref|ZP_04404726.1| transcription-repair coupling factor [Vibrio cholerae TMA 21]
gi|229347971|gb|EEO12930.1| transcription-repair coupling factor [Vibrio cholerae TMA 21]
Length = 1157
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 483 ELKPGQPVVHIEHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 542 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 585
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 586 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 628
>gi|163746248|ref|ZP_02153606.1| transcription-repair coupling factor [Oceanibulbus indolifex
HEL-45]
gi|161380133|gb|EDQ04544.1| transcription-repair coupling factor [Oceanibulbus indolifex
HEL-45]
Length = 1156
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R Q G+ +V+ HG+G ++ AG E V+ + ++ L
Sbjct: 460 PKRKRRAENFLTEAQSLSPGDLVVHVDHGIGRYHGMEVVTAAGAAHECLVLEYA-EQSKL 518
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q AK+ +
Sbjct: 519 YLPVENIELLSRY-----GHDEGLLDKLGGGA----------WQSKKAKLKERIREMADK 563
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + AI + +L+S +
Sbjct: 564 LIRIAAERALRKAPVLDPPPGM---WDAFSARFPYTETDDQLRAIGDVVDDLTSGNP 617
>gi|229589088|ref|YP_002871207.1| transcription-repair coupling factor [Pseudomonas fluorescens
SBW25]
gi|229360954|emb|CAY47814.1| transcription-repair coupling factor [Pseudomonas fluorescens
SBW25]
Length = 1149
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG ++ E+ EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFL-TMEYAEGAKLYVPVASLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ A + + I + ++ +
Sbjct: 584 AFAD---PKADYATFSAGFAFEETPDQQTTIEAVRADMLAPKP 623
>gi|183984436|ref|YP_001852727.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
marinum M]
gi|183177762|gb|ACC42872.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
marinum M]
Length = 1222
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 58/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ V G + E+ V+ +
Sbjct: 502 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGSD 561
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 562 KLYVPMDSLDQLSRY--------------VGGQAPALSRLGGSDWTNTKTKARKAVREIA 607
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+V + + P +++ +++ + ++ + AI ++ ++
Sbjct: 608 GELVALYAKRQASPGHAFAPDTPWQAEME---DAFGFTETVDQLTAITEVKGDMEKSIP 663
>gi|194289485|ref|YP_002005392.1| transcription-repair ATP-dependent coupling factor, helicase
[Cupriavidus taiwanensis LMG 19424]
gi|193223320|emb|CAQ69325.1| transcription-repair ATP-dependent coupling factor, helicase
[Cupriavidus taiwanensis LMG 19424]
Length = 1149
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 48/183 (26%), Gaps = 27/183 (14%)
Query: 2 TFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
T ++K++ + G+ +V+ HG+G + ++ EF +
Sbjct: 463 TGRRKQEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVTLDMGQGDEEFLHLD-YD 521
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + I ++ L + K
Sbjct: 522 KGSKLYVPVHQLHVISRYSGADPDTAP--LHHLGSGQ--------------WDKAKRRAA 565
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSS 171
I + +L ++ + + AI + +++S
Sbjct: 566 QQIRDTAAELLNLYARRAAREGFAFPLSPKDYETFAESFGFEETPDQAAAIAAVIADMTS 625
Query: 172 KSS 174
Sbjct: 626 GKP 628
>gi|126700655|ref|YP_001089552.1| putative regulatory protein [Clostridium difficile 630]
gi|255102148|ref|ZP_05331125.1| putative regulatory protein [Clostridium difficile QCD-63q42]
gi|255308017|ref|ZP_05352188.1| putative regulatory protein [Clostridium difficile ATCC 43255]
gi|115252092|emb|CAJ69930.1| Transcriptional regulator, CarD family [Clostridium difficile]
Length = 165
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 62/165 (37%), Gaps = 6/165 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKE-QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F+ ++I+Y GV + +I + G+K E++V++ + + MRK
Sbjct: 1 MFKIDDYIMYGMTGVCKVMDITNERFTNGIKKEYYVLSPIYSNNTVIKIPVDNEKVPMRK 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTD 126
L V + + R++++ + G + ++VR + +
Sbjct: 61 LLSKINVLSLINDIPNMDTSWIDNEKLRSEQFKKILRGGKCEELIKLVRSIDNNREYVKS 120
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ ++ + + A + E A + IS E + I ++
Sbjct: 121 IGKKTHQADDNIMKEAERLLNEEFATILDISPNEVSSYISSHIPQ 165
>gi|51894370|ref|YP_077061.1| transcription-repair coupling factor [Symbiobacterium thermophilum
IAM 14863]
gi|51858059|dbj|BAD42217.1| transcription-repair coupling factor [Symbiobacterium thermophilum
IAM 14863]
Length = 1243
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q + G+++V+ HG+G ++ + + G+ ++ VI ++ LK+P + I
Sbjct: 563 QDLQVGDYVVHATHGIGRYLGVRSETILGVTRDYLVIQYEGSD-RLKIPTEQVDQIQKY- 620
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
A E L + G AK+ S +I E+ +L R + E
Sbjct: 621 -IGAEGHEPRLNRLGGGE--------------WAKVKSRVKESIREMAAELLRLAALRET 665
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ R + + AI I+ ++
Sbjct: 666 LPGTAFPPDTPWQREFEDAFPYEETPDQLTAIAEIKADMEKARP 709
>gi|302023115|ref|ZP_07248326.1| transcription-repair coupling factor [Streptococcus suis 05HAS68]
gi|330831857|ref|YP_004400682.1| transcription-repair coupling factor [Streptococcus suis ST3]
gi|329306080|gb|AEB80496.1| transcription-repair coupling factor [Streptococcus suis ST3]
Length = 1164
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G+++V+ HG+G I+ E++G+ ++ ++ + +PV +
Sbjct: 482 RIKDYSELAVGDYVVHHVHGIGQYLGIETIEISGIHRDYL-TVQYQNFDRISIPVEQIDL 540
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GKA + R Q K+ ++++
Sbjct: 541 LSKYLAS------------DGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERS 588
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + V + + +I+ I+ ++ S
Sbjct: 589 QLKGFAFSPD---DENQIEFDNYFTHVETDDQLRSIDEIKQDMEKDSP 633
>gi|227494754|ref|ZP_03925070.1| possible transcription-repair coupling factor [Actinomyces
coleocanis DSM 15436]
gi|226831754|gb|EEH64137.1| possible transcription-repair coupling factor [Actinomyces
coleocanis DSM 15436]
Length = 1199
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 60/182 (32%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFD-----K 52
++R + G+ IV+ HG+G E+ + V + ++ ++ + +
Sbjct: 505 ARSKRRGVDPLTLKPGDFIVHETHGIGKFKEMVTRTVGTGAQAVTRDYLLVEYAATRKGQ 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + + S+A + + + AK
Sbjct: 565 PADLLYVPIDQLDQVSRYSGSDAPSLSKI--------------GGAEWAKTKAKARKAVR 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+E+VR + +++ ++ + V + + I+ ++ ++
Sbjct: 611 EIASELVRLYAARHATKGHAFAPDTPWQR---ELEEAFPYVETPDQLATIDEVKADMEKP 667
Query: 173 SS 174
+
Sbjct: 668 TP 669
>gi|320540384|ref|ZP_08040034.1| putative transcription-repair coupling factor [Serratia symbiotica
str. Tucson]
gi|320029315|gb|EFW11344.1| putative transcription-repair coupling factor [Serratia symbiotica
str. Tucson]
Length = 1158
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ ++++ + L VPV I
Sbjct: 483 ELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGED-KLYVPVSSLHLISRYAG 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ S
Sbjct: 542 GADE--NAPLHKLGGDA----------WTRARQKAAERVRDVAAELLDIYAQRVAKTGFS 589
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + ++ + +AIN + ++ +
Sbjct: 590 FKHNR---EQYQLFCQTFPFETTLDQQQAINAVLSDMCQPLA 628
>gi|15801231|ref|NP_287248.1| transcription-repair coupling factor [Escherichia coli O157:H7
EDL933]
gi|12514664|gb|AAG55860.1|AE005321_3 transcription-repair coupling factor; mutation frequency decline
[Escherichia coli O157:H7 str. EDL933]
Length = 1148
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMXQPLA 621
>gi|223933455|ref|ZP_03625440.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
gi|223897893|gb|EEF64269.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
Length = 1164
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G+++V+ HG+G I+ E++G+ ++ ++ + +PV +
Sbjct: 482 RIKDYSELAVGDYVVHHVHGIGQYLGIETIEISGIHRDYL-TVQYQNFDRISIPVEQIDL 540
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GKA + R Q K+ ++++
Sbjct: 541 LSKYLAS------------DGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERS 588
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + V + + +I+ I+ ++ S
Sbjct: 589 QLKGFAFSPD---DENQIEFDNYFTHVETDDQLRSIDEIKQDMEKDSP 633
>gi|294788315|ref|ZP_06753558.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
29453]
gi|294483746|gb|EFG31430.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
29453]
Length = 1131
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 25/181 (13%)
Query: 2 TFQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
T ++K + G+ +V+ HG+G + + +G E ++ + +
Sbjct: 447 TRRRKHASISDTTLRDLAEINIGDPVVHQEHGIGRYMGLTVMDFSGASTEMMLLEYAN-E 505
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I + + + +K +
Sbjct: 506 SQLYVPVSQLHLISRYAGNASDK----------------ITLHKLGTNAWSKAKQKAIEK 549
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +L +Q + + + AI + +L+
Sbjct: 550 ARDTAAELLNLYAQRAAQTGFKFEINELDYQAFADGFGYEETEDQAAAIVSVLKDLTQAK 609
Query: 174 S 174
Sbjct: 610 P 610
>gi|304387420|ref|ZP_07369611.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
13091]
gi|304338513|gb|EFM04632.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
13091]
Length = 1301
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 614 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAG-EA 672
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 673 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 719
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 720 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 776
>gi|332534806|ref|ZP_08410631.1| transcription-repair coupling factor [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035770|gb|EGI72256.1| transcription-repair coupling factor [Pseudoalteromonas
haloplanktis ANT/505]
Length = 1137
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG ++ + AG+ EF V + L VPV +
Sbjct: 465 ELKEGQPVVHLDHGVGRYQGLQTIDAAGVVTEF-VTITYASEAKLYVPVSALHMLSRY-- 521
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S L + A K + +V +L +Q +
Sbjct: 522 SGGEEASAPLHKLGSDA--------------WEKAKKRAAEKVRDVAAELLDIYAQRQAK 567
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ A + + + AI + ++ SK +
Sbjct: 568 PGNKFTLDAPAYRQFSDSFPFEETDDQRNAIEAVLGDMQSKQA 610
>gi|323359428|ref|YP_004225824.1| transcription-repair coupling factor [Microbacterium testaceum
StLB037]
gi|323275799|dbj|BAJ75944.1| transcription-repair coupling factor [Microbacterium testaceum
StLB037]
Length = 1195
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 5/174 (2%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ + G+ +V+ HG+G E+ ++EV+ K+ + L+
Sbjct: 495 LASRRRNVVDPLQLKPGDVVVHATHGIGKFLELTQREVSSGGRNAVKTT--KEYLVLEYA 552
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G + ++ K V G+A M + E+V+
Sbjct: 553 PAKRGYPGDKLFVPTDQLDLLSKYVGGEAPTLSKMGGSDWAAAKGRARKAVRDIAVELVK 612
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + + + + I+ I+ ++
Sbjct: 613 LYSARMASKGYAFGPDTPWQR---ELEEAFPFAETQDQLQTIDEIKADMEKPIP 663
>gi|296283911|ref|ZP_06861909.1| transcription-repair coupling factor [Citromicrobium bathyomarinum
JL354]
Length = 1163
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ Q G+ +V+ HG+G ++ V K + V+ K L +PV +
Sbjct: 479 SELQALSRGDLVVHTEHGIGKYLGLEPVTVGKSKHDC-VMLQYKGGDKLYIPVENLEVLS 537
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
SE + L + G+A K + I E+ +L RT +Q
Sbjct: 538 RYGSSEDAVM---LDRLGGEA--------------WQKRRAQLRERIREIASELMRTAAQ 580
Query: 129 PEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A N+ V + + AI + +L S
Sbjct: 581 RALKKAPVLEADHASYNQFVDRFPWEETEDQERAIADVLGDLESGKP 627
>gi|269139412|ref|YP_003296113.1| transcription-repair coupling factor (superfamily II helicase)
[Edwardsiella tarda EIB202]
gi|267985073|gb|ACY84902.1| transcription-repair coupling factor (superfamily II helicase)
[Edwardsiella tarda EIB202]
gi|304559308|gb|ADM41972.1| Transcription-repair coupling factor [Edwardsiella tarda FL6-60]
Length = 1178
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R G+ +V+ HGVG + E G+K E+ ++++
Sbjct: 486 SRRRQDSRRTINTDTLIRNLAELTPGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYA 545
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV + L + G A K
Sbjct: 546 G-DAKLYVPVSSLHLLSRYAGGADDSAP--LHRLGGDA----------WTRARQKAAEKV 592
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ ++ ++ + A + + + AIN + ++
Sbjct: 593 RDVAAELLDIYAMRAAKAGFAFRHDR---EAYQLFCQGFPFETTADQEIAINAVLSDMCQ 649
Query: 172 KSS 174
+
Sbjct: 650 PLA 652
>gi|144897813|emb|CAM74677.1| Transcription-repair coupling factor (superfamily II helicase)
[Magnetospirillum gryphiswaldense MSR-1]
Length = 1098
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ + G+ +V+ HG+G + +V+G + + L
Sbjct: 413 AKKKRKGSQFLAEASALAEGDLVVHLEHGIGRYDGLVTLQVSGAPHDCLRV-IYDGGDKL 471
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + R SE + R+ W R + + I +
Sbjct: 472 FVPVENIE-VLTRYGSEQAGAQ--------LDRLGGVAWQSRKAKLKKR--------IRD 514
Query: 118 VVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L +Q + SE E + + + AI+ +L S
Sbjct: 515 MADQLIAIAAQRQLRKSESLTPPEGLWDEFCARFPYAETEDQARAIDDTVADLGSGRP 572
>gi|193213782|ref|YP_001994981.1| transcription-repair coupling factor [Chloroherpeton thalassium
ATCC 35110]
gi|193087259|gb|ACF12534.1| transcription-repair coupling factor [Chloroherpeton thalassium
ATCC 35110]
Length = 1110
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/171 (12%), Positives = 56/171 (32%), Gaps = 16/171 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
++ + + G++IV+ +G+G +++ +V G + E V+ L V +
Sbjct: 405 RKISLRELRALKVGDYIVHEDYGIGVFMGMEKTKVGGSEQEC-VLVEYDKGDKLFVNIQN 463
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
+ +E GK + S + Q KI ++
Sbjct: 464 LHLLSKYSSAE------------GKVPTLSKLGSNKWQANKEKIKKRLKDIARNLIAIYA 511
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +++ + + AI I+ ++ + +
Sbjct: 512 KRKMTKGFACKQDSVWQR---EFEAAFIFDETPDQMSAIESIKADMEAVAP 559
>gi|332993550|gb|AEF03605.1| transcription-repair coupling factor [Alteromonas sp. SN2]
Length = 1172
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
TG+ +V+ HGVG ++ + G+ E+ + L VPV I
Sbjct: 501 ELTTGQPVVHLDHGVGRYIGMQTLDAGGVTTEYL-CIEYAKQAKLYVPVASLHFISRYTG 559
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+A + WS+ Q+ K+ +A + D++ +
Sbjct: 560 GDADHAP--------LNSLGSDAWSKAKQKAAEKVR-----DVAAELLDVYARRAAKPGF 606
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + + + +AI + ++ S +
Sbjct: 607 AYNIEWDE--YQKFADSFPFEETPDQAQAIAAVIHDMGSPHA 646
>gi|258645650|ref|ZP_05733119.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
gi|260403014|gb|EEW96561.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
Length = 1135
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 18/172 (10%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+ K+ G+++V HG+G +K E+ G+ ++ I + L +P+ +
Sbjct: 447 KGKQIRYFSDLEPGDYVVQRVHGIGKYIGVKTIELEGVHRDYITIQYAGAD-KLYLPMEQ 505
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
+ AL + G K+ +I E+ L
Sbjct: 506 IASLEKY--IGPEGQTPALHRMGGVQ--------------WDKVRRKAKKSIEELAEKLL 549
Query: 124 RTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + L ++A R V + + EAI ++ +
Sbjct: 550 AVYADREITEGISFLPDTAEQREFEDTFPFVETDDQLEAIQAVKRGMERPQP 601
>gi|213420794|ref|ZP_03353860.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 367
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 51 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 109
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 110 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 157
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 158 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 196
>gi|187918225|ref|YP_001883788.1| CarD-like transcriptional regulator [Borrelia hermsii DAH]
gi|119861073|gb|AAX16868.1| CarD-like transcriptional regulator [Borrelia hermsii DAH]
Length = 161
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 20 IVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVE 79
+VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R L VE
Sbjct: 9 VVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVSRADDLGIRALVSREKVE 68
Query: 80 RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139
+++ + D+++ A++ + L+ Q E + E+++
Sbjct: 69 EVFDIMKDFEGQIDQ--KKIKDGSHDFYKQSDILSTAKLYKFLYTKSMQKELPFYEKRIL 126
Query: 140 ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ EI+ IS EA I+ LS+
Sbjct: 127 NDFELILQHEISLALQISFEEAKQKIKEVLSTGK 160
>gi|325132515|gb|EGC55208.1| transcription-repair coupling factor [Neisseria meningitidis M6190]
Length = 1232
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 545 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAG-EA 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 604 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 650
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 651 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 707
>gi|325128294|gb|EGC51178.1| transcription-repair coupling factor [Neisseria meningitidis N1568]
Length = 1305
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 618 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 676
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 677 QLYVPVSQLHLISRY--SGQAHENIALHKLGSGAWNKAKR-----------KAAEKARDT 723
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 724 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 780
>gi|315301109|ref|ZP_07872401.1| transcription-repair coupling factor [Listeria ivanovii FSL F6-596]
gi|313630521|gb|EFR98362.1| transcription-repair coupling factor [Listeria ivanovii FSL F6-596]
Length = 237
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 63/179 (35%), Gaps = 21/179 (11%)
Query: 1 MTFQQK-----RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
M +QK R + G+++V+ HG+ ++ ++ G+ ++ ++ + +
Sbjct: 1 MKKRQKLSNAERIQSYSELKVGDYVVHINHGIARYVGMETLDINGVHKDYLLL-VYQGED 59
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L +PV + + +E GK+ + + K+ +
Sbjct: 60 KLFIPVDQLDLVQKYVGAE------------GKSPRLNKLGGXXXKRVKKKVQASVQDIA 107
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ +++ ++S + + + + +I I+ ++
Sbjct: 108 DDLIKLYAEREAEKGYAFSPDEEMQR---EFEDAFPYQETDDQLRSIAEIKKDMERPRP 163
>gi|307705912|ref|ZP_07642750.1| transcription-repair coupling factor [Streptococcus mitis SK597]
gi|307620573|gb|EFN99671.1| transcription-repair coupling factor [Streptococcus mitis SK597]
Length = 1168
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 487 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + ++ K+ + ++++ +
Sbjct: 546 S------------DGKDPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A V + + ++ I+ ++ +
Sbjct: 594 FSADDEDQHA---FDDAFPYVETDDQLRSVEEIKRDMQASQP 632
>gi|160914796|ref|ZP_02077010.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991]
gi|158433336|gb|EDP11625.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991]
Length = 1143
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q G+++V+ HG+G I +E+ G+ +F I K L VP+ + I RK
Sbjct: 476 QELNVGDYVVHHQHGIGKYLGIVNKEIDGIHKDFLHI-AYKGDDVLLVPLEQFQLI--RK 532
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
L + ++ K++ +V +
Sbjct: 533 FVSKEGAVPKLNKLGSGE----------WEKTKRKVSEKIAQLAQRLVHLYASREEHIGF 582
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ + + ++ + + A+ I+ ++ S
Sbjct: 583 AFSKDSELQ---KQFEQDFDYELTHDQARAVKEIKQDMESSKP 622
>gi|310767325|gb|ADP12275.1| transcription-repair coupling factor [Erwinia sp. Ejp617]
Length = 1148
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R +G+ +V+ HGVG + E G+K E+ ++++
Sbjct: 455 SRRRQDSRRTINPDVLIRNLAELHSGQPVVHLEHGVGRYIGMTTLETGGIKAEYLMLSYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I ++ WSR Q+ K+
Sbjct: 515 G-DAKLYVPVSSLHLISRYAGGAEENAP--------LHKLGSDAWSRARQKAAEKVR--- 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+A + D++ + + + ++ + +AIN + ++
Sbjct: 563 --DVAAELLDIYAQRAAKTGFAF--KHDKQQYQLFCDSFPFETTVDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|153952805|ref|YP_001393570.1| hypothetical protein CKL_0152 [Clostridium kluyveri DSM 555]
gi|146345686|gb|EDK32222.1| Mfd [Clostridium kluyveri DSM 555]
Length = 1173
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+ IV+ HG+G IK+ E+ G K ++ + ++ + L VPV +
Sbjct: 497 KIKSFTELKPGDFIVHVNHGIGVYKGIKQLELQGHKKDYLELVYECED-KLYVPVEQLDM 555
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GK + S + K ++++
Sbjct: 556 VQKYIGSE------------GKNPKINKLGSSEWSKVKKKAKKSIEEMAEDLIKLYAIRS 603
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ YS+ +++ + E + + I I++++ S
Sbjct: 604 TLKGYKYSKDTIWQ---KQFEDEFPYEETPDQLSTIQDIKMDMESDK 647
>gi|307711221|ref|ZP_07647643.1| transcription-repair coupling factor [Streptococcus mitis SK321]
gi|307617183|gb|EFN96361.1| transcription-repair coupling factor [Streptococcus mitis SK321]
Length = 1167
Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A V + + ++ I+ ++ +
Sbjct: 595 FSADDEDQHA---FDDAFPYVETDDQLRSVEEIKRDMQASQP 633
>gi|56479184|ref|YP_160773.1| transcription-repair coupling protein Mfd [Aromatoleum aromaticum
EbN1]
gi|56315227|emb|CAI09872.1| Transcription-repair coupling protein Mfd [Aromatoleum aromaticum
EbN1]
Length = 1157
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 54/169 (31%), Gaps = 20/169 (11%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVA---GMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ +V+ +HG+G + ++ G ++ F+ + L VPV +
Sbjct: 483 DLSELKPGDPVVHVSHGIGRYLGLIHMDLGEGRGSQMSEFLHLEYANGDKLYVPVSQLHV 542
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I ++ V+ L + K + + + +L
Sbjct: 543 ITRYAGADPDAVD--LHRLGSGQ--------------WEKAKKKAALQVRDTAAELLALY 586
Query: 127 SQPEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Q R ++ L+ + + AI+ + ++ S
Sbjct: 587 AQRAARPGHRFDFKQHDLDAFAEGFGFETTPDQQAAIDAVVTDMKSGQP 635
>gi|315442986|ref|YP_004075865.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
gi|315261289|gb|ADT98030.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
Length = 1202
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 58/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ + G + E+ V+ +
Sbjct: 507 LAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVIGGARREYLVLEYASAKRGGGSD 566
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 567 RLYVPMDSLDQLSRY--------------VGGEAPTLSRLGGSDWANTKTKARRAVREIA 612
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE+V + + P ++S ++ + ++ + AI ++ ++
Sbjct: 613 AELVTLYAKRQASPGHAFSPDTPWQVEME---DAFGFTETVDQLTAITEVKSDMEKPVP 668
>gi|268684509|ref|ZP_06151371.1| transcription-repair coupling factor [Neisseria gonorrhoeae
SK-92-679]
gi|268624793|gb|EEZ57193.1| transcription-repair coupling factor [Neisseria gonorrhoeae
SK-92-679]
Length = 1241
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 552 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 610
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 611 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 657
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 658 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 714
>gi|117623299|ref|YP_852212.1| transcription-repair coupling factor [Escherichia coli APEC O1]
gi|115512423|gb|ABJ00498.1| transcription-repair coupling factor; mutation frequency decline
[Escherichia coli APEC O1]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCGSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|258625932|ref|ZP_05720803.1| transcription-repair coupling factor [Vibrio mimicus VM603]
gi|258581797|gb|EEW06675.1| transcription-repair coupling factor [Vibrio mimicus VM603]
Length = 872
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 197 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMISE-YVMLEYQNEAKLYVPVSSLNLISRYSG 255
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 256 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 299
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 300 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQPKA 342
>gi|311279979|ref|YP_003942210.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
gi|308749174|gb|ADO48926.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 53/183 (28%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G+K E+ +
Sbjct: 455 ARRRQDTRRTINPDTLIRNLAELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTY 513
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I L + G A K
Sbjct: 514 ASDAKLYVPVSSLHLISRYAGGAEE--NAPLHKLGGDA----------WARARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAAKEGYAFRHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|330829926|ref|YP_004392878.1| transcription-repair coupling factor [Aeromonas veronii B565]
gi|328805062|gb|AEB50261.1| Transcription-repair coupling factor [Aeromonas veronii B565]
Length = 1157
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 20/162 (12%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG ++ + G+ EF + + L VPV I
Sbjct: 488 ELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGD-KLFVPVTSLHLISRYTG 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S+ + E +K + +V +L +
Sbjct: 547 SDNPPSHKLGG------------------EAWSKARRKAAEKVRDVAAELLDVYAHRAAR 588
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + A + + + AIN + ++
Sbjct: 589 AGFAFKHDKEAYRQFAASFPFEETDDQLNAINAVLGDMCQAK 630
>gi|323953199|gb|EGB49065.1| transcription-repair coupling protein [Escherichia coli H252]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCGSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|219853470|ref|YP_002470592.1| hypothetical protein CKR_0127 [Clostridium kluyveri NBRC 12016]
gi|219567194|dbj|BAH05178.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 1183
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+ IV+ HG+G IK+ E+ G K ++ + ++ + L VPV +
Sbjct: 507 KIKSFTELKPGDFIVHVNHGIGVYKGIKQLELQGHKKDYLELVYECED-KLYVPVEQLDM 565
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GK + S + K ++++
Sbjct: 566 VQKYIGSE------------GKNPKINKLGSSEWSKVKKKAKKSIEEMAEDLIKLYAIRS 613
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ YS+ +++ + E + + I I++++ S
Sbjct: 614 TLKGYKYSKDTIWQ---KQFEDEFPYEETPDQLSTIQDIKMDMESDK 657
>gi|218960874|ref|YP_001740649.1| putative transcription-repair coupling factor [Candidatus
Cloacamonas acidaminovorans]
gi|167729531|emb|CAO80443.1| putative transcription-repair coupling factor [Candidatus
Cloacamonas acidaminovorans]
Length = 1127
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+++V+ HG+G +K + G +E V+ + D +V V + K
Sbjct: 457 EDLKPGDYVVHIDHGIGVFEGLKIIRLDGSDVECLVLRYANDD---RVYVPTYQLSLVTK 513
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ L + S + K + A++V+ S+
Sbjct: 514 YVAEESTKPVLNKL----------GSSKWNNTKRKAAQQIELIAADIVKLYAERSSRLGI 563
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + ++ + +A I+ ++ +
Sbjct: 564 AHQPDTEWQ---KELEDSFIYEDTPDQSKATKEIKEDMELPAP 603
>gi|157146181|ref|YP_001453500.1| transcription-repair coupling factor [Citrobacter koseri ATCC
BAA-895]
gi|157083386|gb|ABV13064.1| hypothetical protein CKO_01937 [Citrobacter koseri ATCC BAA-895]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDARLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|152985046|ref|YP_001347529.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
gi|150960204|gb|ABR82229.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M +++ R G +V+ HGVG + EV + EF +
Sbjct: 456 MQRRRREKTRDGGDAVIKNLTELREGAPVVHIDHGVGRYLGLITLEVDNQQAEFL-MLQY 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I ++ + S Q+ K
Sbjct: 515 AEDAKLYVPVANLHLIARYTGADDALAP------------LHRLGSETWQKAKRKAAEQV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ R ++ ++ + ++ + + AI + ++ +
Sbjct: 563 RDVAAELLDIYARRAAREGFAFKD---PQADYATFSAGFPFEETPDQQSAIEAVVADMLA 619
Query: 172 KSS 174
Sbjct: 620 PRP 622
>gi|311029189|ref|ZP_07707279.1| CarD family transcriptional regulator [Bacillus sp. m3-13]
Length = 136
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 73/128 (57%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+++VYP HGVG I +I+E+E++G K +++VI+ M + +P GK + +R ++
Sbjct: 7 FKIGDNVVYPMHGVGIIKDIEEKEISGEKQQYYVISMLISNMQIMIPTGKILSSSIRPVT 66
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ ++ + + + + W +R + KI +G ++ AEVVRDL R + +
Sbjct: 67 DIIALKHIMHIFQHGESDRLLPWKQRFKLNTEKIKTGKILEGAEVVRDLLRMKKEKALNS 126
Query: 134 SERQLYES 141
SE++ E
Sbjct: 127 SEKKNAEQ 134
>gi|300917885|ref|ZP_07134518.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
gi|300414875|gb|EFJ98185.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|294636793|ref|ZP_06715130.1| transcription-repair coupling factor [Edwardsiella tarda ATCC
23685]
gi|291089984|gb|EFE22545.1| transcription-repair coupling factor [Edwardsiella tarda ATCC
23685]
Length = 847
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G+K E+ ++++
Sbjct: 155 SRRRQDNRRTINTDTLIRNLAELAPGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYA 214
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV + L + G A K
Sbjct: 215 G-DAKLYVPVSSLHLLSRYAGGADESAP--LHRLGGDA----------WTRARQKAAEKV 261
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ ++ ++ + A + + + AIN + ++
Sbjct: 262 RDVAAELLDIYAMRAAKAGFAFRHDR---EAYQLFCQGFPFETTPDQEMAINAVLGDMCQ 318
Query: 172 KSS 174
+
Sbjct: 319 PLA 321
>gi|145222538|ref|YP_001133216.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
gi|145215024|gb|ABP44428.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
Length = 1198
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 58/179 (32%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ + G + E+ V+ +
Sbjct: 503 LAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVIGGARREYLVLEYASAKRGGGAD 562
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 563 RLYVPMDSLDQLSRY--------------VGGEAPTLSRLGGSDWANTKTKARRAVREIA 608
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
AE+V + + P ++S ++ + ++ + AI ++ ++
Sbjct: 609 AELVTLYAKRQASPGHAFSPDTPWQVEME---DAFGFTETVDQLTAITEVKSDMEKPVP 664
>gi|254235976|ref|ZP_04929299.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
C3719]
gi|126167907|gb|EAZ53418.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
C3719]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M +++ R G +V+ HGVG + EV + EF +
Sbjct: 456 MQRRRREKTRDGGDAVIKNLTELREGAPVVHIDHGVGRYLGLITLEVDNQQAEFL-MLQY 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I ++ + S Q+ K
Sbjct: 515 AEDAKLYVPVANLHLIARYTGADDALAP------------LHRLGSETWQKAKRKAAEQV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ R ++ ++ + ++ + + AI + ++ +
Sbjct: 563 RDVAAELLDIYARRAAREGFAFKD---PQADYATFSAGFPFEETPDQQSAIEAVVADMLA 619
Query: 172 KSS 174
Sbjct: 620 PRP 622
>gi|116051004|ref|YP_790170.1| transcription-repair coupling factor [Pseudomonas aeruginosa
UCBPP-PA14]
gi|313108292|ref|ZP_07794324.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
gi|115586225|gb|ABJ12240.1| transcription-repair coupling factor [Pseudomonas aeruginosa
UCBPP-PA14]
gi|310880826|gb|EFQ39420.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M +++ R G +V+ HGVG + EV + EF +
Sbjct: 456 MQRRRREKTRDGGDAVIKNLTELREGAPVVHIDHGVGRYLGLITLEVDNQQAEFL-MLQY 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I ++ + S Q+ K
Sbjct: 515 AEDAKLYVPVANLHLIARYTGADDALAP------------LHRLGSETWQKAKRKAAEQV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ R ++ ++ + ++ + + AI + ++ +
Sbjct: 563 RDVAAELLDIYARRAAREGFAFKD---PQADYATFSAGFPFEETPDQQSAIEAVVADMLA 619
Query: 172 KSS 174
Sbjct: 620 PRP 622
>gi|268686819|ref|ZP_06153681.1| transcription-repair coupling factor [Neisseria gonorrhoeae
SK-93-1035]
gi|268627103|gb|EEZ59503.1| transcription-repair coupling factor [Neisseria gonorrhoeae
SK-93-1035]
Length = 1241
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 552 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 610
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 611 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 657
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 658 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 714
>gi|268599202|ref|ZP_06133369.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
gi|268603888|ref|ZP_06138055.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
gi|268682351|ref|ZP_06149213.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
gi|268583333|gb|EEZ48009.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
gi|268588019|gb|EEZ52695.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
gi|268622635|gb|EEZ55035.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
Length = 1241
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 552 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 610
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 611 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 657
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 658 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 714
>gi|107102552|ref|ZP_01366470.1| hypothetical protein PaerPA_01003616 [Pseudomonas aeruginosa PACS2]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M +++ R G +V+ HGVG + EV + EF +
Sbjct: 456 MQRRRREKTRDGGDAVIKNLTELREGAPVVHIDHGVGRYLGLITLEVDNQQAEFL-MLQY 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I ++ + S Q+ K
Sbjct: 515 AEDAKLYVPVANLHLIARYTGADDALAP------------LHRLGSETWQKAKRKAAEQV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ R ++ ++ + ++ + + AI + ++ +
Sbjct: 563 RDVAAELLDIYARRAAREGFAFKD---PQADYATFSAGFPFEETPDQQSAIEAVVADMLA 619
Query: 172 KSS 174
Sbjct: 620 PRP 622
>gi|333004926|gb|EGK24446.1| transcription-repair coupling factor [Shigella flexneri VA-6]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLNDMCQPLA 621
>gi|15598198|ref|NP_251692.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
PAO1]
gi|218890799|ref|YP_002439663.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
LESB58]
gi|9949103|gb|AAG06390.1|AE004725_3 transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
PAO1]
gi|218771022|emb|CAW26787.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
LESB58]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M +++ R G +V+ HGVG + EV + EF +
Sbjct: 456 MQRRRREKTRDGGDAVIKNLTELREGAPVVHIDHGVGRYLGLITLEVDNQQAEFL-MLQY 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I ++ + S Q+ K
Sbjct: 515 AEDAKLYVPVANLHLIARYTGADDALAP------------LHRLGSETWQKAKRKAAEQV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ R ++ ++ + ++ + + AI + ++ +
Sbjct: 563 RDVAAELLDIYARRAAREGFAFKD---PQADYATFSAGFPFEETPDQQSAIEAVVADMLA 619
Query: 172 KSS 174
Sbjct: 620 PRP 622
>gi|210632030|ref|ZP_03297170.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
gi|210159746|gb|EEA90717.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
Length = 1195
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+++V+ HGV EI QEV G + ++F++ + L VP+ + I
Sbjct: 512 FKPGDYVVHSTHGVALFAEIVRQEVGGKERDYFLLEYAGGD-KLYVPLEQVDRITCYVGP 570
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ A R R + DL + +
Sbjct: 571 DGDNPR---LTRLNTADWSRATAKARKSAKKLAFDLVDLYTRRSSITGFAFGPDSAAQVE 627
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + +AI I+ ++ S
Sbjct: 628 MEE------------SFPYDETHDQLDAIADIKADMESTKP 656
>gi|315287490|gb|EFU46901.1| transcription-repair coupling factor [Escherichia coli MS 110-3]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|260440312|ref|ZP_05794128.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae DGI2]
gi|291043604|ref|ZP_06569320.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
gi|291012067|gb|EFE04056.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
Length = 1234
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 545 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 604 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 650
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 651 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 707
>gi|254486916|ref|ZP_05100121.1| transcription-repair coupling factor [Roseobacter sp. GAI101]
gi|214043785|gb|EEB84423.1| transcription-repair coupling factor [Roseobacter sp. GAI101]
Length = 1174
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 25/178 (14%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R Q G+ +V+ HG+G ++ AG E ++ + + L
Sbjct: 480 AKRKRRAENFLTETQSLTPGDLVVHVDHGIGRYLGMEVITAAGAAHECLLLEYA-ENSKL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A Q A++ +
Sbjct: 539 YLPVENIELLSKY-----GHDEGLLDKLGGGA----------WQSKKARLKERIREMADK 583
Query: 118 VVRDLHRTDSQP-EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + ++++ + + AIN + +L+S +
Sbjct: 584 LIRIAAERALRRAPIMDPPPGMWDA----FSARFPYTETDDQMSAINDVIDDLTSGNP 637
>gi|189463579|ref|ZP_03012364.1| hypothetical protein BACCOP_04303 [Bacteroides coprocola DSM 17136]
gi|189429682|gb|EDU98666.1| hypothetical protein BACCOP_04303 [Bacteroides coprocola DSM 17136]
Length = 1123
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + G + + ++ + V + I
Sbjct: 433 ELNMFEPGDYVVHIDHGIGKFAGLVRI-PNGNTTQEVIKLVYQNDDVVFVSIHSLHKISK 491
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + + ++++ + +
Sbjct: 492 YKGKE------------GEQPRISKLGTGAWEKIKERTKTKIKDIARDLIKLYSQRKQEK 539
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + + ++ + +A ++ ++ S
Sbjct: 540 GFKYSPDSFMQ---HELEASFIYEDTPDQLKATQEVKADMESDRP 581
>gi|170020491|ref|YP_001725445.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
gi|169755419|gb|ACA78118.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|188491808|ref|ZP_02999078.1| transcription-repair coupling factor [Escherichia coli 53638]
gi|188487007|gb|EDU62110.1| transcription-repair coupling factor [Escherichia coli 53638]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|332306962|ref|YP_004434813.1| transcription-repair coupling factor [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174291|gb|AEE23545.1| transcription-repair coupling factor [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 1160
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 65/177 (36%), Gaps = 23/177 (12%)
Query: 5 QKRDAM-------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++ G+ +V+ HGVG ++ + G+ E+ I + K + L
Sbjct: 472 KRQATDENAVIRNLAELAIGQPVVHLDHGVGRYLGLQTLDAGGVTTEYLTIEYAK-EAKL 530
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV I S + L + + WS+ Q+ ++ +A
Sbjct: 531 YVPVSALHLISRY--SGGDLEKAPLHNLGTE------TWSKAKQKAAERVR-----DVAA 577
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ D++ + +S + ++ ++ + +AIN + ++ S ++
Sbjct: 578 QLLDVYARRAAKP-GFSYKIAWDE-YQAFSDSFPFEETLDQQQAINAVIQDMGSSNA 632
>gi|300691385|ref|YP_003752380.1| transcription-repair ATP-dependent coupling factor, helicase
[Ralstonia solanacearum PSI07]
gi|299078445|emb|CBJ51097.1| transcription-repair ATP-dependent coupling factor, helicase
[Ralstonia solanacearum PSI07]
Length = 1143
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ + EF +
Sbjct: 459 RRKQEQASAVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGHGEEEFLHLD-YDKG 517
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 518 SKLYVPVHQLHVISRYSGADPDTAP--LHQLGSGQ--------------WEKAKRRAAQQ 561
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + + AI + +++S
Sbjct: 562 IRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDETPDQAAAIAAVIADMTSGK 621
Query: 174 S 174
Sbjct: 622 P 622
>gi|240016396|ref|ZP_04722936.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae FA6140]
gi|240125910|ref|ZP_04738796.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae SK-92-679]
Length = 1234
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 545 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 604 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 650
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 651 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 707
>gi|209773002|gb|ACI84813.1| transcription-repair coupling factor [Escherichia coli]
gi|326339337|gb|EGD63151.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
1125]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|91210269|ref|YP_540255.1| transcription-repair coupling factor [Escherichia coli UTI89]
gi|237706900|ref|ZP_04537381.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
gi|91071843|gb|ABE06724.1| transcription-repair coupling factor; mutation frequency decline
[Escherichia coli UTI89]
gi|226898110|gb|EEH84369.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
Length = 1169
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 497 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 556 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 604 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 642
>gi|15830746|ref|NP_309519.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
Sakai]
gi|168751336|ref|ZP_02776358.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4113]
gi|168757829|ref|ZP_02782836.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4401]
gi|168764889|ref|ZP_02789896.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4501]
gi|168771340|ref|ZP_02796347.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4486]
gi|168783484|ref|ZP_02808491.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4076]
gi|168790092|ref|ZP_02815099.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC869]
gi|168802501|ref|ZP_02827508.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC508]
gi|195938873|ref|ZP_03084255.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4024]
gi|208809609|ref|ZP_03251946.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4206]
gi|208815000|ref|ZP_03256179.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4045]
gi|208822485|ref|ZP_03262804.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4042]
gi|209399391|ref|YP_002269959.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4115]
gi|217328545|ref|ZP_03444627.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
TW14588]
gi|254792497|ref|YP_003077334.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
TW14359]
gi|261226982|ref|ZP_05941263.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256216|ref|ZP_05948749.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
FRIK966]
gi|291282134|ref|YP_003498952.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
CB9615]
gi|13360956|dbj|BAB34915.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
Sakai]
gi|188014612|gb|EDU52734.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4113]
gi|188999153|gb|EDU68139.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4076]
gi|189355265|gb|EDU73684.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4401]
gi|189359855|gb|EDU78274.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4486]
gi|189365183|gb|EDU83599.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4501]
gi|189370352|gb|EDU88768.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC869]
gi|189375509|gb|EDU93925.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC508]
gi|208729410|gb|EDZ79011.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4206]
gi|208731648|gb|EDZ80336.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4045]
gi|208737970|gb|EDZ85653.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4042]
gi|209160791|gb|ACI38224.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC4115]
gi|209772998|gb|ACI84811.1| transcription-repair coupling factor [Escherichia coli]
gi|209773000|gb|ACI84812.1| transcription-repair coupling factor [Escherichia coli]
gi|209773004|gb|ACI84814.1| transcription-repair coupling factor [Escherichia coli]
gi|209773006|gb|ACI84815.1| transcription-repair coupling factor [Escherichia coli]
gi|217318972|gb|EEC27398.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
TW14588]
gi|254591897|gb|ACT71258.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
TW14359]
gi|290762007|gb|ADD55968.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
CB9615]
gi|320188121|gb|EFW62786.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
EC1212]
gi|320637565|gb|EFX07365.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
G5101]
gi|320643126|gb|EFX12327.1| transcription-repair coupling factor [Escherichia coli O157:H- str.
493-89]
gi|320648584|gb|EFX17239.1| transcription-repair coupling factor [Escherichia coli O157:H- str.
H 2687]
gi|320653898|gb|EFX21972.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659379|gb|EFX26948.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
USDA 5905]
gi|320664514|gb|EFX31665.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
LSU-61]
gi|326340418|gb|EGD64221.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
1044]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|300938685|ref|ZP_07153409.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
gi|300456330|gb|EFK19823.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|268601549|ref|ZP_06135716.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
gi|268585680|gb|EEZ50356.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
Length = 1241
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 552 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 610
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 611 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 657
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 658 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 714
>gi|331646372|ref|ZP_08347475.1| transcription-repair coupling factor [Escherichia coli M605]
gi|331045124|gb|EGI17251.1| transcription-repair coupling factor [Escherichia coli M605]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|240013954|ref|ZP_04720867.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae DGI18]
gi|240121523|ref|ZP_04734485.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae PID24-1]
Length = 1234
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 545 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 604 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 650
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 651 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 707
>gi|240128422|ref|ZP_04741083.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae SK-93-1035]
Length = 1234
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 545 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 604 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 650
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 651 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 707
>gi|240080515|ref|ZP_04725058.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae FA19]
gi|240113117|ref|ZP_04727607.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae MS11]
gi|240118171|ref|ZP_04732233.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae PID1]
gi|240123719|ref|ZP_04736675.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae PID332]
gi|268596647|ref|ZP_06130814.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
gi|268550435|gb|EEZ45454.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
Length = 1234
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 545 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 604 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 650
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 651 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 707
>gi|239999138|ref|ZP_04719062.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae 35/02]
gi|268594974|ref|ZP_06129141.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
gi|268548363|gb|EEZ43781.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
gi|317164430|gb|ADV07971.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae TCDC-NG08107]
Length = 1234
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 545 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 604 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 650
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 651 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 707
>gi|59801051|ref|YP_207763.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae FA 1090]
gi|59717946|gb|AAW89351.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae FA 1090]
Length = 1234
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 545 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 604 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 650
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 651 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 707
>gi|317479277|ref|ZP_07938412.1| transcription-repair coupling factor [Bacteroides sp. 4_1_36]
gi|316904565|gb|EFV26384.1| transcription-repair coupling factor [Bacteroides sp. 4_1_36]
Length = 983
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + E I +++ + V + +
Sbjct: 487 ELNQFTPGDYVVHTDHGVGRFAGLVRIPNGDTTQEVMKI-VYQNEDVVFVSIHSLHKVSK 545
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 546 YKGKE------------GEAPRLNKLGTGAWEKLKDRTKTKIKDIARDLIKLYSQRREEK 593
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + ++ + +A + ++ ++ S
Sbjct: 594 GFQYSPDSFLQR---ELEASFIYEDTPDQSKATSDVKADMESTRP 635
>gi|300948704|ref|ZP_07162781.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
gi|300956220|ref|ZP_07168532.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
gi|301644530|ref|ZP_07244523.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
gi|331641657|ref|ZP_08342792.1| transcription-repair coupling factor [Escherichia coli H736]
gi|260449747|gb|ACX40169.1| transcription-repair coupling factor [Escherichia coli DH1]
gi|300316948|gb|EFJ66732.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
gi|300451798|gb|EFK15418.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
gi|301077112|gb|EFK91918.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
gi|331038455|gb|EGI10675.1| transcription-repair coupling factor [Escherichia coli H736]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|260575079|ref|ZP_05843080.1| transcription-repair coupling factor [Rhodobacter sp. SW2]
gi|259022701|gb|EEW25996.1| transcription-repair coupling factor [Rhodobacter sp. SW2]
Length = 1147
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 25/178 (14%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ A G+ +V+ HGVG ++ G E + L
Sbjct: 461 PRKRRKAENFLAEVNSLSPGDLVVHVEHGVGRFRGLETIMALGAPHECL-ALEYAENARL 519
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A + I E
Sbjct: 520 YLPVENIELLSRY-----GHEEGLLDRLGGGA--------------WQAKKAKLKDRIRE 560
Query: 118 VVRDLHRTDSQPEKSYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L R ++ ++ A+ + + AI + +L + S
Sbjct: 561 IAERLMRIAAERHLRHAPILEAPHAMWEAFAARFPYQETDDQLAAIADVVADLEAGSP 618
>gi|194098853|ref|YP_002001917.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae NCCP11945]
gi|240115873|ref|ZP_04729935.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae PID18]
gi|193934143|gb|ACF29967.1| putative transcription-repair coupling factor [Neisseria
gonorrhoeae NCCP11945]
Length = 1234
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G T + ++ G E ++ + +
Sbjct: 545 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EA 603
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 604 QLYVPVSQLHLISRY--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDT 650
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E ES + + AI + +L+
Sbjct: 651 AAELLNLYAQRAAQSGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 707
>gi|157160641|ref|YP_001457959.1| transcription-repair coupling factor [Escherichia coli HS]
gi|312971250|ref|ZP_07785428.1| transcription-repair coupling factor [Escherichia coli 1827-70]
gi|157066321|gb|ABV05576.1| transcription-repair coupling factor [Escherichia coli HS]
gi|310336452|gb|EFQ01638.1| transcription-repair coupling factor [Escherichia coli 1827-70]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|261867464|ref|YP_003255386.1| transcription-repair coupling factor [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412796|gb|ACX82167.1| transcription-repair coupling factor [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 1173
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + E G+K E+ ++ + L VPV I
Sbjct: 503 ELQIGQPVVHLEHGVGRYGGLVTLENGGVKAEYLLLNYAN-NSKLYVPVASLHLISRYVG 561
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E K S I +V +L +Q E
Sbjct: 562 GSDETA----------------PLHKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQ 605
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + AIN + +++ +
Sbjct: 606 KGFSFQYDREEFQQFTATFPFEETHDQLMAINAVISDMTQPKA 648
>gi|215486325|ref|YP_002328756.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
E2348/69]
gi|312968807|ref|ZP_07783014.1| transcription-repair coupling factor [Escherichia coli 2362-75]
gi|215264397|emb|CAS08754.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
E2348/69]
gi|312286209|gb|EFR14122.1| transcription-repair coupling factor [Escherichia coli 2362-75]
gi|323190466|gb|EFZ75740.1| transcription-repair coupling factor [Escherichia coli RN587/1]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|331652166|ref|ZP_08353185.1| transcription-repair coupling factor [Escherichia coli M718]
gi|331050444|gb|EGI22502.1| transcription-repair coupling factor [Escherichia coli M718]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|323976513|gb|EGB71601.1| transcription-repair coupling protein [Escherichia coli TW10509]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|323185763|gb|EFZ71124.1| transcription-repair coupling factor [Escherichia coli 1357]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|315135746|dbj|BAJ42905.1| transcription-repair coupling factor [Escherichia coli DH1]
Length = 1169
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 497 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 556 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 604 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 642
>gi|330910930|gb|EGH39440.1| transcription-repair coupling factor [Escherichia coli AA86]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|300821105|ref|ZP_07101254.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
gi|331676906|ref|ZP_08377602.1| transcription-repair coupling factor [Escherichia coli H591]
gi|300526404|gb|EFK47473.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
gi|331075595|gb|EGI46893.1| transcription-repair coupling factor [Escherichia coli H591]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|218557995|ref|YP_002390908.1| transcription-repair coupling factor [Escherichia coli S88]
gi|218364764|emb|CAR02454.1| transcription-repair coupling factor [Escherichia coli S88]
gi|294491241|gb|ADE89997.1| transcription-repair coupling factor [Escherichia coli IHE3034]
gi|307627415|gb|ADN71719.1| transcription-repair coupling factor [Escherichia coli UM146]
gi|323957940|gb|EGB53652.1| transcription-repair coupling protein [Escherichia coli H263]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|218548644|ref|YP_002382435.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
35469]
gi|218356185|emb|CAQ88802.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
35469]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|90109237|pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
gi|90109238|pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 479 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 538 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 585
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 586 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 624
>gi|301328512|ref|ZP_07221578.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
gi|307310109|ref|ZP_07589759.1| transcription-repair coupling factor [Escherichia coli W]
gi|300845119|gb|EFK72879.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
gi|306909827|gb|EFN40321.1| transcription-repair coupling factor [Escherichia coli W]
gi|315060391|gb|ADT74718.1| transcription-repair coupling factor [Escherichia coli W]
gi|323379049|gb|ADX51317.1| transcription-repair coupling factor [Escherichia coli KO11]
gi|324017516|gb|EGB86735.1| transcription-repair coupling factor [Escherichia coli MS 117-3]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|254774025|ref|ZP_05215541.1| hypothetical protein MaviaA2_05024 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 1201
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 22/179 (12%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-----KDKM 55
+ +++ G+ +V+ HG+G E+ E+ G + E+ V+ +
Sbjct: 487 LAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTGGGARREYLVLEYASSKRGGGSD 546
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP+ + V G+A + K
Sbjct: 547 KLYVPMDSLDQLSRY--------------VGGQAPALSKLGGSDWANTKTKARRAVREIA 592
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+V + + P ++S +++ + ++ + AI ++ ++
Sbjct: 593 GELVSLYAKRQASPGHAFSPDTPWQAEME---DAFGYTETVDQLTAITEVKSDMEKPIP 648
>gi|284799822|ref|ZP_05984959.2| transcription-repair coupling factor [Neisseria subflava NJ9703]
gi|284796912|gb|EFC52259.1| transcription-repair coupling factor [Neisseria subflava NJ9703]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G + ++ G E ++ + + L VPV + I
Sbjct: 491 DLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EAQLYVPVSQLHLISR 549
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S AL + A K + A + +L+ +
Sbjct: 550 Y--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDTAAELLNLYAQRAAQ 596
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +L+
Sbjct: 597 SGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 639
>gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
Length = 1177
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 58/175 (33%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + R ++IV+ HG+G +++ V E+ VI + L+V
Sbjct: 492 KRRRAASKQVDPNKLRPKDYIVHRNHGIGQFLKLESLTVDKETREYLVIQYA--DGLLRV 549
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV + + + S + M + ++ K +++
Sbjct: 550 PVDQMGSLSRYRTSVEQRPQ------------LNKMTGKAWEKTKGKARKAIKKVAVDLL 597
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +Y E ++ + + + +A ++ ++ S
Sbjct: 598 KLYAQRSQMQGFTYPEDMPWQ---QELEDSFPYNPTPDQLKATQDVKRDMESDRP 649
>gi|333008322|gb|EGK27796.1| transcription-repair coupling factor [Shigella flexneri K-272]
gi|333019810|gb|EGK39082.1| transcription-repair coupling factor [Shigella flexneri K-227]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|332279698|ref|ZP_08392111.1| transcription-repair coupling factor [Shigella sp. D9]
gi|332102050|gb|EGJ05396.1| transcription-repair coupling factor [Shigella sp. D9]
Length = 1169
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 497 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 556 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 604 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 642
>gi|331672629|ref|ZP_08373418.1| transcription-repair coupling factor [Escherichia coli TA280]
gi|331070272|gb|EGI41638.1| transcription-repair coupling factor [Escherichia coli TA280]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|325497055|gb|EGC94914.1| transcription-repair coupling factor [Escherichia fergusonii
ECD227]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|324113535|gb|EGC07510.1| transcription-repair coupling protein [Escherichia fergusonii B253]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|323967055|gb|EGB62481.1| transcription-repair coupling protein [Escherichia coli M863]
gi|327253513|gb|EGE65151.1| transcription-repair coupling factor [Escherichia coli STEC_7v]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|317485406|ref|ZP_07944285.1| transcription-repair coupling factor [Bilophila wadsworthia 3_1_6]
gi|316923365|gb|EFV44572.1| transcription-repair coupling factor [Bilophila wadsworthia 3_1_6]
Length = 1149
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ +G+ + E +F ++ L VPV + I K
Sbjct: 482 DELKPGDLLVHRDYGIARFGGLLRMETGSTANDFLLL-HYSGDDRLYVPVDRLSLIQRFK 540
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ +L + G A Q K +++
Sbjct: 541 GGGEA--QPSLDRLGGGA----------WQSGKEKARKAIEKIAEDLIEMYAWRKVAKGF 588
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + + +AI + ++
Sbjct: 589 RYP---PLGELYREFEASFGFEETPDQAKAIQDVLADMEKPEP 628
>gi|315296619|gb|EFU55914.1| transcription-repair coupling factor [Escherichia coli MS 16-3]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|312792831|ref|YP_004025754.1| transcription-repair coupling factor [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179971|gb|ADQ40141.1| transcription-repair coupling factor [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 1141
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+ +V+ HG+G ++ V G E +V + L VP I
Sbjct: 480 EDLKPGDFVVHRTHGIGKFLGFEKITVEGTTKE-YVKLEYANSSYLYVPTTNLDVIEKYI 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + S+ Q+ K+ I ++V +
Sbjct: 539 GT------------DDVQPKLSKLGSQEWQKQKQKVRKSLEIVAKDLVELYAKRQLHKGF 586
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ L++ + + + +AI I+ ++ S+
Sbjct: 587 KFSKDTLWQ---KEFEEKFPYTETEGQLQAIEEIKRDMESEKP 626
>gi|309389992|gb|ADO77872.1| transcription-repair coupling factor [Halanaerobium praevalens DSM
2228]
Length = 1160
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 58/166 (34%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ ++G+++V+ HG+G +K E+ ++ V+ + + L VP K +
Sbjct: 492 SNVNDLKSGDYVVHENHGIGKYLGVKTLEIQNKHKDYLVLKYAGED-KLYVPTEKIDLVQ 550
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
S+A + + S ++ K+ ++ ++
Sbjct: 551 KYIGSDAGNPK------------LYKLGSSDWKKVKEKVQQSVEKMAVGLLELYAERETL 598
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +++ + + +AI+ ++ ++ S
Sbjct: 599 TGYQFPKDDVWQ---KEFEDSFPFEETPDQKKAISALKSDMESIKP 641
>gi|300922643|ref|ZP_07138740.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
gi|300420992|gb|EFK04303.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|301023324|ref|ZP_07187117.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
gi|300397049|gb|EFJ80587.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|284920939|emb|CBG34002.1| transcription-repair coupling factor [Escherichia coli 042]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|227886529|ref|ZP_04004334.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
gi|301051097|ref|ZP_07197931.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
gi|227836733|gb|EEJ47199.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
gi|300297269|gb|EFJ53654.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
gi|307553115|gb|ADN45890.1| transcription-repair coupling factor [Escherichia coli ABU 83972]
gi|315291014|gb|EFU50379.1| transcription-repair coupling factor [Escherichia coli MS 153-1]
Length = 1164
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|218689066|ref|YP_002397278.1| transcription-repair coupling factor [Escherichia coli ED1a]
gi|218426630|emb|CAR07458.1| transcription-repair coupling factor [Escherichia coli ED1a]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|170768251|ref|ZP_02902704.1| transcription-repair coupling factor [Escherichia albertii TW07627]
gi|170123017|gb|EDS91948.1| transcription-repair coupling factor [Escherichia albertii TW07627]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|77360776|ref|YP_340351.1| transcription-repair ATP-dependent coupling factor
[Pseudoalteromonas haloplanktis TAC125]
gi|76875687|emb|CAI86908.1| transcription-repair ATP-dependent coupling factor
[Pseudoalteromonas haloplanktis TAC125]
Length = 1157
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGVG ++ + AG+ EF V + L VPV +
Sbjct: 485 ELKEGQPIVHLDHGVGRYQGLQTIDAAGIITEF-VTITYASEAKLYVPVSALHMLSRY-- 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S L + A K + +V +L +Q +
Sbjct: 542 SGGEEASAPLHKLGSDA--------------WDKAKKRAAEKVRDVAAELLDIYAQRQAK 587
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ A + + + AI + ++ SK +
Sbjct: 588 PGNKFTLDAPAYRQFSDSFPFEETDDQRNAIEAVLGDMQSKQA 630
>gi|16129077|ref|NP_415632.1| transcription-repair coupling factor [Escherichia coli str. K-12
substr. MG1655]
gi|89107960|ref|AP_001740.1| transcription-repair coupling factor [Escherichia coli str. K-12
substr. W3110]
gi|170080765|ref|YP_001730085.1| transcription-repair coupling factor [Escherichia coli str. K-12
substr. DH10B]
gi|238900368|ref|YP_002926164.1| transcription-repair coupling factor [Escherichia coli BW2952]
gi|256023188|ref|ZP_05437053.1| transcription-repair coupling factor [Escherichia sp. 4_1_40B]
gi|307137749|ref|ZP_07497105.1| transcription-repair coupling factor [Escherichia coli H736]
gi|2507063|sp|P30958|MFD_ECOLI RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|1651547|dbj|BAA35929.1| transcription-repair coupling factor [Escherichia coli str. K12
substr. W3110]
gi|1787357|gb|AAC74198.1| transcription-repair coupling factor [Escherichia coli str. K-12
substr. MG1655]
gi|169888600|gb|ACB02307.1| transcription-repair coupling factor [Escherichia coli str. K-12
substr. DH10B]
gi|238863683|gb|ACR65681.1| transcription-repair coupling factor [Escherichia coli BW2952]
gi|309701385|emb|CBJ00686.1| transcription-repair coupling factor [Escherichia coli ETEC H10407]
gi|323937854|gb|EGB34118.1| transcription-repair coupling protein [Escherichia coli E1520]
gi|323942583|gb|EGB38750.1| transcription-repair coupling protein [Escherichia coli E482]
Length = 1148
Score = 92.2 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|331682620|ref|ZP_08383239.1| transcription-repair coupling factor [Escherichia coli H299]
gi|331080251|gb|EGI51430.1| transcription-repair coupling factor [Escherichia coli H299]
Length = 1148
Score = 92.2 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|324005970|gb|EGB75189.1| transcription-repair coupling factor [Escherichia coli MS 57-2]
Length = 1164
Score = 92.2 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|300816816|ref|ZP_07097036.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
gi|300902508|ref|ZP_07120488.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
gi|301305647|ref|ZP_07211736.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
gi|309796542|ref|ZP_07690949.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
gi|300405409|gb|EFJ88947.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
gi|300530590|gb|EFK51652.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
gi|300839075|gb|EFK66835.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
gi|308119854|gb|EFO57116.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
gi|315253014|gb|EFU32982.1| transcription-repair coupling factor [Escherichia coli MS 85-1]
Length = 1164
Score = 92.2 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|110805128|ref|YP_688648.1| transcription-repair coupling factor [Shigella flexneri 5 str.
8401]
gi|110614676|gb|ABF03343.1| transcription-repair coupling factor [Shigella flexneri 5 str.
8401]
Length = 1169
Score = 92.2 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 497 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 556 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 604 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 642
>gi|281600530|gb|ADA73514.1| Transcription-repair coupling factor [Shigella flexneri 2002017]
Length = 1169
Score = 92.2 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 497 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 556 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 604 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 642
>gi|110641290|ref|YP_669020.1| transcription-repair coupling factor [Escherichia coli 536]
gi|300982404|ref|ZP_07176102.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
gi|110342882|gb|ABG69119.1| transcription-repair coupling factor [Escherichia coli 536]
gi|300307241|gb|EFJ61761.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
gi|324013204|gb|EGB82423.1| transcription-repair coupling factor [Escherichia coli MS 60-1]
Length = 1164
Score = 92.2 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|299362|gb|AAB26029.1| Mfd protein, transcription repair coupling factor, TRCF=mfd product
[Escherichia coli, Peptide, 1148 aa]
Length = 1148
Score = 92.2 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|316934177|ref|YP_004109159.1| transcription-repair coupling factor [Rhodopseudomonas palustris
DX-1]
gi|315601891|gb|ADU44426.1| transcription-repair coupling factor [Rhodopseudomonas palustris
DX-1]
Length = 1172
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ TG+ +V+ HG+G ++ +V G + V + L +PV +
Sbjct: 495 SEVTSLSTGDIVVHVEHGIGRFVGLQTLQVGGAPHDC-VELHYANDTKLFLPVENIELLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
++ + W R + + I ++ +L + ++
Sbjct: 554 RYGSDGTTV---------ELDKLGGSGWQARKAKLKNR--------IRQIAGELIKVAAE 596
Query: 129 PEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + AIN +L +
Sbjct: 597 RHLREAPKLPIQPQLYDEFCARFPYDETEDQLAAINAALGDLEKGTP 643
>gi|317047729|ref|YP_004115377.1| transcription-repair coupling factor [Pantoea sp. At-9b]
gi|316949346|gb|ADU68821.1| transcription-repair coupling factor [Pantoea sp. At-9b]
Length = 1147
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 54/183 (29%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G++ E+ ++++
Sbjct: 455 SRRRQDNRRTINPDVLIRNLAELHPGQPVVHLEHGVGRYIGLTRLEAGGIEAEYLMLSYA 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV I + S K
Sbjct: 515 G-DAKLYVPVSSLHLISRYAGGADENAP------------LHKLGSDAWSRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ + + + +AIN + ++
Sbjct: 562 RDVAAELLDIYAQRAAKAGFAFKHDR---DQYQLFCEGFPFETTPDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|146306624|ref|YP_001187089.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
gi|145574825|gb|ABP84357.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
Length = 1145
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E G EF D+ L VPV I
Sbjct: 474 TELREGAPVVHIDHGVGRYLGLVTMEFDGQAAEFL-ALQYADEAKLYVPVASLHLIARYS 532
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 533 GSDDALAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGF 580
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + L + + AI+ + ++ +
Sbjct: 581 AFQDPAL---DYATFSAGFPFEETPDQQAAIDAVRADMLAGKP 620
>gi|55980858|ref|YP_144155.1| transcription-repair coupling factor [Thermus thermophilus HB8]
gi|55772271|dbj|BAD70712.1| transcription-repair coupling factor [Thermus thermophilus HB8]
Length = 978
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 61/167 (36%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+++++P HGVG ++ +EV G+K ++ V+ K + L +PV + +
Sbjct: 314 SDPGALSPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVL-RYKGEGKLYLPVEQLPLLK 372
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ E + + + RA++ + E+ L ++
Sbjct: 373 RHPGTTDDPPE-----LSSLGKNEWQRAKERARK-----------DVEELAGRLLVLQAK 416
Query: 129 PEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +V + + + A+ + +L S
Sbjct: 417 RKATPGRAFPPLPEWDPLVEKGFPYELTPDQKRALEEVLRDLESPHP 463
>gi|296388503|ref|ZP_06877978.1| transcription-repair coupling factor [Pseudomonas aeruginosa PAb1]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 25/183 (13%)
Query: 1 MTFQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
M +++ R G +V+ HGVG + EV + EF +
Sbjct: 456 MQRRRREKTRDGGDAVIKNLTELREGAPVVHIDHGVGRYLGLITLEVDNQQAEFL-MLQY 514
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I ++ + S Q+ K
Sbjct: 515 AEDAKLYVPVANLHLIARYTGADDALAP------------LHRLGSETWQKAKRKAAEQV 562
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ R ++ ++ + ++ + + AI + ++ +
Sbjct: 563 RDVAAELLDIYARRAAREGFAFKD---PQADYASFSAGFPFEETPDQQSAIEAVVADMLA 619
Query: 172 KSS 174
Sbjct: 620 PRP 622
>gi|330808512|ref|YP_004352974.1| transcription-repair coupling factor [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327376620|gb|AEA67970.1| Transcription-repair coupling factor [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 1149
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLATLEIDNQAAEFL-TLEYAEGAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ ++ + I + ++ +
Sbjct: 584 AFAD---PKADYETFSAGFPFEETVDQQTTIEAVRADMLAPKP 623
>gi|293433403|ref|ZP_06661831.1| transcription-repair coupling factor [Escherichia coli B088]
gi|331667514|ref|ZP_08368378.1| transcription-repair coupling factor [Escherichia coli TA271]
gi|291324222|gb|EFE63644.1| transcription-repair coupling factor [Escherichia coli B088]
gi|320201009|gb|EFW75593.1| Transcription-repair coupling factor [Escherichia coli EC4100B]
gi|331065099|gb|EGI36994.1| transcription-repair coupling factor [Escherichia coli TA271]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|222032867|emb|CAP75606.1| Transcription-repair-coupling factor [Escherichia coli LF82]
gi|312945676|gb|ADR26503.1| transcription-repair coupling factor [Escherichia coli O83:H1 str.
NRG 857C]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum
H10]
gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum
H10]
Length = 1174
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 61/166 (36%), Gaps = 16/166 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ +V+ AHG+G I+ V +K ++ I ++ L +P +
Sbjct: 497 KIKAFSDLNIGDFVVHQAHGIGQYIGIENLSVGEVKRDYLKI-RYQEGDFLYIPTNQLDL 555
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GK + + +++ AE+++ +
Sbjct: 556 LQKYIGSE------------GKTPRVNKLGGTEWAKTKSRVKESLQQLAAELIKLYAQRQ 603
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
S S+SE +++ + + + + I+ I+ ++ S+
Sbjct: 604 SAKGHSFSEDTVWQRQFEEL---FPYQETDDQLKCIDEIKKDMESE 646
>gi|187730283|ref|YP_001880716.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
gi|187427275|gb|ACD06549.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|191168584|ref|ZP_03030368.1| transcription-repair coupling factor [Escherichia coli B7A]
gi|209918370|ref|YP_002292454.1| transcription-repair coupling factor [Escherichia coli SE11]
gi|218553691|ref|YP_002386604.1| transcription-repair coupling factor [Escherichia coli IAI1]
gi|218694647|ref|YP_002402314.1| transcription-repair coupling factor [Escherichia coli 55989]
gi|260854597|ref|YP_003228488.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
str. 11368]
gi|190901378|gb|EDV61143.1| transcription-repair coupling factor [Escherichia coli B7A]
gi|209911629|dbj|BAG76703.1| transcription-repair coupling factor [Escherichia coli SE11]
gi|218351379|emb|CAU97085.1| transcription-repair coupling factor [Escherichia coli 55989]
gi|218360459|emb|CAQ98013.1| transcription-repair coupling factor [Escherichia coli IAI1]
gi|257753246|dbj|BAI24748.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
str. 11368]
gi|323156751|gb|EFZ42887.1| transcription-repair coupling factor [Escherichia coli EPECa14]
gi|323175269|gb|EFZ60882.1| transcription-repair coupling factor [Escherichia coli LT-68]
gi|323947582|gb|EGB43586.1| transcription-repair coupling protein [Escherichia coli H120]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|193066296|ref|ZP_03047347.1| transcription-repair coupling factor [Escherichia coli E22]
gi|194429791|ref|ZP_03062305.1| transcription-repair coupling factor [Escherichia coli B171]
gi|260843354|ref|YP_003221132.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
str. 12009]
gi|192926068|gb|EDV80711.1| transcription-repair coupling factor [Escherichia coli E22]
gi|194412138|gb|EDX28446.1| transcription-repair coupling factor [Escherichia coli B171]
gi|257758501|dbj|BAI29998.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
str. 12009]
gi|323163658|gb|EFZ49480.1| transcription-repair coupling factor [Escherichia coli E128010]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|315618286|gb|EFU98876.1| transcription-repair coupling factor [Escherichia coli 3431]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|300928331|ref|ZP_07143866.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
gi|300463663|gb|EFK27156.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
Length = 1164
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|281178224|dbj|BAI54554.1| transcription-repair coupling factor [Escherichia coli SE15]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|332089282|gb|EGI94388.1| transcription-repair coupling factor [Shigella boydii 5216-82]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|329122093|ref|ZP_08250701.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
19965]
gi|327466900|gb|EGF12416.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
19965]
Length = 1132
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 18/173 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
Q K+ + G+++V +HG+G + E+ G+ + +V L +P+
Sbjct: 448 SQGKQVRYFSDLKVGDYVVQRSHGIGKYIGVNTIEIDGIHRD-YVTIQYAGDDKLYLPME 506
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
K + AL + G +I + +I E+ L
Sbjct: 507 KIRTLEKY--IGPEGKVPALNKMGGIQ--------------WERIRNKAKKSIKELAEKL 550
Query: 123 HRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + L +S+ V + + A I+ ++ S +
Sbjct: 551 LKVYAERQLAKGISFLPDSSEQIEFEDAFEYVETPDQLSATEKIKKSMESSTP 603
>gi|323175654|gb|EFZ61248.1| transcription-repair coupling factor [Escherichia coli 1180]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|295096197|emb|CBK85287.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ IV+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHPGQPIVHLEHGVGRYQGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WARARQKAAEKVRDVAAELLDIYAQRAAKEGYA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHD---KEQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|256018630|ref|ZP_05432495.1| transcription-repair coupling factor [Shigella sp. D9]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|253773863|ref|YP_003036694.1| transcription-repair coupling factor [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253324907|gb|ACT29509.1| transcription-repair coupling factor [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
Length = 1164
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|227485004|ref|ZP_03915320.1| transcription-repair coupling factor [Anaerococcus lactolyticus
ATCC 51172]
gi|227237001|gb|EEI87016.1| transcription-repair coupling factor [Anaerococcus lactolyticus
ATCC 51172]
Length = 1162
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 65/182 (35%), Gaps = 25/182 (13%)
Query: 2 TFQQKRDAMR---------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
T +K + + G+++V+ +G+G + + E ++ +F +I +
Sbjct: 475 TSSKKNNRKKVSSKNIINYSDLEIGDYVVHENNGIGIYKGLTKIERNDVEKDFILIE-YR 533
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L +PV + + + RG+ + S + Q+ +
Sbjct: 534 GNDKLYIPVDQMNLVSKYIGN------------RGEKPKLSALGSLQWQKSKQRAKKAVD 581
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++V+ + + ++S+ ++ + S+ +I I+ ++ S+
Sbjct: 582 EIADDLVKLYAKRAKEKGHAFSKDTTWQV---EFENSFPYDETFSQLRSIEEIKADMESE 638
Query: 173 SS 174
+
Sbjct: 639 NP 640
>gi|82544418|ref|YP_408365.1| transcription-repair coupling factor [Shigella boydii Sb227]
gi|81245829|gb|ABB66537.1| transcription-repair coupling factor [Shigella boydii Sb227]
gi|320175622|gb|EFW50714.1| Transcription-repair coupling factor [Shigella dysenteriae CDC
74-1112]
gi|320184241|gb|EFW59055.1| Transcription-repair coupling factor [Shigella flexneri CDC 796-83]
gi|332094450|gb|EGI99499.1| transcription-repair coupling factor [Shigella boydii 3594-74]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|322375221|ref|ZP_08049735.1| transcription-repair coupling factor [Streptococcus sp. C300]
gi|321280721|gb|EFX57760.1| transcription-repair coupling factor [Streptococcus sp. C300]
Length = 1167
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIQLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A V + + +I I+ ++
Sbjct: 595 FSADDDEQHA---FDDAFPYVETDDQLRSIEEIKRDMQDSHP 633
>gi|260867476|ref|YP_003233878.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
str. 11128]
gi|257763832|dbj|BAI35327.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
str. 11128]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|226953095|ref|ZP_03823559.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244]
gi|226836187|gb|EEH68570.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244]
Length = 1153
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + E+ EF + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLEIDDQDHEFLQLDYADA-AKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKLGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + A ++ + AI ++
Sbjct: 583 KPGFAFELDHIAYMQFASGFAYEETLDQANAIEATLHDMQLAKP 626
>gi|218700384|ref|YP_002408013.1| transcription-repair coupling factor [Escherichia coli IAI39]
gi|293409480|ref|ZP_06653056.1| transcription-repair coupling factor [Escherichia coli B354]
gi|218370370|emb|CAR18173.1| transcription-repair coupling factor [Escherichia coli IAI39]
gi|291469948|gb|EFF12432.1| transcription-repair coupling factor [Escherichia coli B354]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|209809474|ref|YP_002265012.1| transcription-repair coupling factor [Aliivibrio salmonicida
LFI1238]
gi|208011036|emb|CAQ81450.1| transcription-repair coupling factor [Aliivibrio salmonicida
LFI1238]
Length = 1151
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ +V M E+ + ++ L VPV I
Sbjct: 480 ELKVGQPVVHLDHGIGRYMGLQTLDVGDMPAEYM-MLEYLNETKLYVPVSSLNLISRYSA 538
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ W + ++ K+ +A + D++ +
Sbjct: 539 GADDSAP--------ISKLGSDAWGKARRKAAEKVR-----DVAAELLDVYAKRAIKLGF 585
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + A + + AIN + ++ +
Sbjct: 586 AFKQD--KEAYADFRSSFPFEETHDQEIAINDVLSDMCQAKA 625
>gi|56479827|ref|NP_707029.2| transcription-repair coupling factor [Shigella flexneri 2a str.
301]
gi|56383378|gb|AAN42736.2| transcription-repair coupling factor [Shigella flexneri 2a str.
301]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|74311675|ref|YP_310094.1| transcription-repair coupling factor [Shigella sonnei Ss046]
gi|73855152|gb|AAZ87859.1| transcription-repair coupling factor [Shigella sonnei Ss046]
gi|323165624|gb|EFZ51411.1| transcription-repair coupling factor [Shigella sonnei 53G]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|115524796|ref|YP_781707.1| transcription-repair coupling factor [Rhodopseudomonas palustris
BisA53]
gi|115518743|gb|ABJ06727.1| transcription-repair coupling factor [Rhodopseudomonas palustris
BisA53]
Length = 1179
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 55/167 (32%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ TG+ +V+ HG+G ++ +V G + ++ L +PV +
Sbjct: 496 SEVTSLATGDIVVHVEHGIGRFVGLQTLQVGGAPHDCL-ELHYANETKLFLPVENIELLS 554
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
A+ ++ + W R + + I E+ +L + ++
Sbjct: 555 RYGSDGANV---------ELDKLGGSGWQARKAKLKNR--------IREMAGELIKIAAE 597
Query: 129 PEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ + + + + AIN +L +
Sbjct: 598 RQLRETQKIAVQPHLYDEFCARFPYEETEDQLAAINAALHDLETGKP 644
>gi|320179184|gb|EFW54142.1| Transcription-repair coupling factor [Shigella boydii ATCC 9905]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|30062647|ref|NP_836818.1| transcription-repair coupling factor [Shigella flexneri 2a str.
2457T]
gi|30040893|gb|AAP16624.1| transcription-repair coupling factor [Shigella flexneri 2a str.
2457T]
gi|313650430|gb|EFS14837.1| transcription-repair coupling factor [Shigella flexneri 2a str.
2457T]
gi|332758277|gb|EGJ88600.1| transcription-repair coupling factor [Shigella flexneri 4343-70]
gi|332759433|gb|EGJ89741.1| transcription-repair coupling factor [Shigella flexneri 2747-71]
gi|332761054|gb|EGJ91341.1| transcription-repair coupling factor [Shigella flexneri K-671]
gi|332767336|gb|EGJ97530.1| transcription-repair coupling factor [Shigella flexneri 2930-71]
gi|333005518|gb|EGK25036.1| transcription-repair coupling factor [Shigella flexneri K-218]
gi|333019350|gb|EGK38633.1| transcription-repair coupling factor [Shigella flexneri K-304]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|332878210|ref|ZP_08445938.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683822|gb|EGJ56691.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 1104
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ EV G + E + D+ L V
Sbjct: 410 AKKQAITLKELMQLEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKL-IYGDRDVLFVS 468
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S + K + +++
Sbjct: 469 IHALHKITKYNG------------KDGKPPKIYKLGSGAWKALKQKTKARVKEIAFNLIQ 516
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ + N + ++ + +A ++ ++ S
Sbjct: 517 LYAKRKEAQGYAFAHDSYMQ---NELEASFLYEDTPDQSKATAEVKADMESAKP 567
>gi|34541397|ref|NP_905876.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
gi|34397714|gb|AAQ66775.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
Length = 1122
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++IV+ HG+G + +V G + E + ++ + V + +
Sbjct: 427 ELNQFSQGDYIVHIDHGIGRFGGLITTDVGGKRQEVIKL-IYRNNDIIFVNLHSLHKLSK 485
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K ++ +L G Q+ + +++R + +
Sbjct: 486 YKGGDSDAQVELSRLGTGA-----------WQKLKERTKKRVKDIARDLIRLYAQRKEER 534
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + A ++ ++ S
Sbjct: 535 GFAFSPDSYLQ---HELEASFLYEDTPDQERATAEVKADMESDRP 576
>gi|300723616|ref|YP_003712921.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
nematophila ATCC 19061]
gi|297630138|emb|CBJ90775.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
nematophila ATCC 19061]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 16/160 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++ + + L VPV I
Sbjct: 475 ELRQGQPVVHLDHGVGRYQGLTTLEAGGIKAEYLILTYAGED-KLYVPVSSLHLISRYVG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A + K AE++ + +P +
Sbjct: 534 GAEESAP--LHKLGGEA----------WSKARQKAAEKVRDVAAELLDVYAQRAVRPGFA 581
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++ + + + + + IN + ++
Sbjct: 582 FTNDR---EQYQLFCQSFPFDTTPDQEQTINAVLDDMCQP 618
>gi|191173073|ref|ZP_03034606.1| transcription-repair coupling factor [Escherichia coli F11]
gi|190906618|gb|EDV66224.1| transcription-repair coupling factor [Escherichia coli F11]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|306814036|ref|ZP_07448209.1| transcription-repair coupling factor [Escherichia coli NC101]
gi|305852673|gb|EFM53121.1| transcription-repair coupling factor [Escherichia coli NC101]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|170682845|ref|YP_001744064.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
gi|170520563|gb|ACB18741.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|126726506|ref|ZP_01742347.1| transcription-repair coupling factor [Rhodobacterales bacterium
HTCC2150]
gi|126704369|gb|EBA03461.1| transcription-repair coupling factor [Rhodobacterales bacterium
HTCC2150]
Length = 1157
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 49/178 (27%), Gaps = 25/178 (14%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T ++KR Q G+ IV+ HGVG ++ AG E + L
Sbjct: 463 TKRKKRAENFLTEAQSLTVGDLIVHIEHGVGIYNGLETITAAGAPHEC-IALEYARGDRL 521
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + L + G A R +E I E
Sbjct: 522 YLPVVNIELLSRY-----GQDTGLLDRLGGGA---WQAKKARMKE-----------RIRE 562
Query: 118 VVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L + ++ + + + + AI + +L
Sbjct: 563 MANRLIQVAAERALRTAPMLEAPHDMWESFSARFPFQETEDQLGAIEAVAEDLGRGLP 620
>gi|157158427|ref|YP_001462347.1| transcription-repair coupling factor [Escherichia coli E24377A]
gi|193070928|ref|ZP_03051859.1| transcription-repair coupling factor [Escherichia coli E110019]
gi|157080457|gb|ABV20165.1| transcription-repair coupling factor [Escherichia coli E24377A]
gi|192955782|gb|EDV86254.1| transcription-repair coupling factor [Escherichia coli E110019]
gi|324117315|gb|EGC11222.1| transcription-repair coupling protein [Escherichia coli E1167]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|46198841|ref|YP_004508.1| transcription-repair coupling factor [Thermus thermophilus HB27]
gi|46196464|gb|AAS80881.1| transcription-repair coupling factor [Thermus thermophilus HB27]
Length = 978
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+++++P HGVG ++ +EV G+K ++ V+ K + L +PV + +
Sbjct: 314 SDPGALSPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVL-RYKGEGKLYLPVEQLPLLK 372
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ S + + + E+ L ++
Sbjct: 373 RHPGTTDD----------------PPELSSLGKNEWQRAKEKARKDVEELAGRLLVLQAK 416
Query: 129 PEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +V + + + A+ + +L S
Sbjct: 417 RKATPGRAFPPLPEWDPLVEKGFPYELTPDQKRALEEVLRDLESPHP 463
>gi|30248039|ref|NP_840109.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea
ATCC 19718]
gi|30179924|emb|CAD83919.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea
ATCC 19718]
Length = 1154
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 49/168 (29%), Gaps = 20/168 (11%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ G +V+ HG+G + + G EF + L VPV +
Sbjct: 475 DLSEIKPGSPVVHEQHGIGRYLGLVNMNMGEDDSGQSSEFL-ALEYQGGDKLYVPVTQLH 533
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I + A + S + ++ K AE++ +
Sbjct: 534 LISRYSGAAPE------------AAPLHKLGSGQWEKAKRKAMQQVRDTAAELLNLYAQR 581
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + + N + + AIN + ++ S
Sbjct: 582 AARKGHIF---RFNQHDYNAFADGFGFEETPDQATAINAVIQDMVSGK 626
>gi|320197559|gb|EFW72172.1| Transcription-repair coupling factor [Escherichia coli WV_060327]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|188995578|ref|YP_001929830.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
33277]
gi|188595258|dbj|BAG34233.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
33277]
Length = 1122
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++IV+ HG+G + +V G + E + ++ + V + +
Sbjct: 427 ELNQFSQGDYIVHIDHGIGRFGGLITTDVGGKRQEVIKL-IYRNNDIIFVNLHSLHKLSK 485
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K ++ +L G Q+ + +++R + +
Sbjct: 486 YKGGDSDAQVELSRLGTGA-----------WQKLKERTKKRVKDIARDLIRLYAQRKEER 534
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + A ++ ++ S
Sbjct: 535 GFAFSPDSYLQ---HELEASFLYEDTPDQERATAEVKADMESDRP 576
>gi|194439730|ref|ZP_03071799.1| transcription-repair coupling factor [Escherichia coli 101-1]
gi|194421349|gb|EDX37367.1| transcription-repair coupling factor [Escherichia coli 101-1]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|325286644|ref|YP_004262434.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
gi|324322098|gb|ADY29563.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
Length = 1113
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HGVG +++ +V G K E + ++ L V
Sbjct: 417 AKKQAITLKELTKLDIGDYVTHIDHGVGKFGGLQKIDVEGKKQEAIKL-MYSERDVLYVS 475
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S ++ K + ++++
Sbjct: 476 IHSLHKISK------------FAGKDGKPPKIFKLGSGAWKKLKQKTKTRVKQIAFDLIK 523
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ + + + ++ + +A ++ ++ S
Sbjct: 524 VYANRRLKKGFKYAPDSYLQ---HELEASFIYEDTPDQSKATEDLKKDMESDRP 574
>gi|323962713|gb|EGB58291.1| transcription-repair coupling protein [Escherichia coli H489]
gi|323973296|gb|EGB68485.1| transcription-repair coupling protein [Escherichia coli TA007]
gi|332342663|gb|AEE55997.1| transcription-repair coupling factor protein [Escherichia coli
UMNK88]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|213649271|ref|ZP_03379324.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 1130
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 458 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 516
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 517 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 564
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 565 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 603
>gi|313891693|ref|ZP_07825300.1| transcription-repair coupling factor [Dialister microaerophilus
UPII 345-E]
gi|313119971|gb|EFR43156.1| transcription-repair coupling factor [Dialister microaerophilus
UPII 345-E]
Length = 1126
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 18/173 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
Q K+ + G+++V +HG+G + E+ G+ + +V L +P+
Sbjct: 442 SQGKQVRYFSDLKVGDYVVQRSHGIGKYIGVNTIEIDGIHRD-YVTIQYAGDDKLYLPME 500
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
K + AL + G +I + +I E+ L
Sbjct: 501 KIRTLEKY--IGPEGKVPALNKMGGIQ--------------WERIRNKAKKSIKELAEKL 544
Query: 123 HRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + L +S+ V + + A I+ ++ S +
Sbjct: 545 LKVYAERQLAKGISFLPDSSEQIEFEDAFEYVETPDQLSATEKIKKSMESSTP 597
>gi|254161220|ref|YP_003044328.1| transcription-repair coupling factor [Escherichia coli B str.
REL606]
gi|242376916|emb|CAQ31635.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
gi|253973121|gb|ACT38792.1| transcription-repair coupling factor [Escherichia coli B str.
REL606]
gi|253977335|gb|ACT43005.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|160880796|ref|YP_001559764.1| CarD family transcriptional regulator [Clostridium phytofermentans
ISDg]
gi|160429462|gb|ABX43025.1| transcriptional regulator, CarD family [Clostridium phytofermentans
ISDg]
Length = 168
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 7/165 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
F+ G++I+Y +GV + I E E + + ++ + + + MR
Sbjct: 1 MFQVGDYIIYGMNGVCVVENIGEIETKVVPKDRLYYTLRPYYSDRSTIFTPTDNLKVKMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR-----T 125
+ L + R EY I D + ++V+ L+
Sbjct: 61 SILTKDEAVSILNNIHNIDCSWDIDEKIREMEYKEAIRQCDCKQLLKIVKSLYFSRKAKL 120
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ + + Y A + + E+A + E L+ +
Sbjct: 121 ADGKKVPARDEKYYHMAEDSLYGELAVSLGLEIEETKELVLSKIE 165
>gi|84516196|ref|ZP_01003556.1| transcription-repair coupling factor [Loktanella vestfoldensis
SKA53]
gi|84509892|gb|EAQ06349.1| transcription-repair coupling factor [Loktanella vestfoldensis
SKA53]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 54/177 (30%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +++R + G+ +V+ HGVG ++ G E +IA+ ++ L
Sbjct: 459 TKRKRRAENFLSEANSLAPGDLVVHVDHGVGRFEGMEVVTALGAAHECLLIAYA-EETKL 517
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + L + G A Q A++
Sbjct: 518 YLPVENIELLSKY-----GHEAGLLDKLGGGA----------WQAKKARLKERIRQIAER 562
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + ++ + + + AI+ + +L S
Sbjct: 563 LIRVAAERALRKAPVLEPESGL---WDQFLARFPYAETDDQLSAIDDVLSDLGSGQP 616
>gi|330502559|ref|YP_004379428.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
gi|328916845|gb|AEB57676.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
Length = 1145
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E G EF D+ L VPV I
Sbjct: 474 TELREGAPVVHIDHGVGRYLGLVTMEFDGQAAEFL-ALQYADEAKLYVPVASLHLIARYS 532
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 533 GSDDALAP------------LHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGF 580
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + AI+ + ++ +
Sbjct: 581 AFQD---PAVDYATFSAGFPFEETPDQQTAIDAVRNDMLAGKP 620
>gi|331662525|ref|ZP_08363448.1| transcription-repair coupling factor [Escherichia coli TA143]
gi|331060947|gb|EGI32911.1| transcription-repair coupling factor [Escherichia coli TA143]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|237731096|ref|ZP_04561577.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
gi|226906635|gb|EEH92553.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHPGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|262372249|ref|ZP_06065528.1| transcription-repair coupling factor [Acinetobacter junii SH205]
gi|262312274|gb|EEY93359.1| transcription-repair coupling factor [Acinetobacter junii SH205]
Length = 1153
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + E+ EF + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLVTLEIDQQDHEFLQLDYAD-GAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKLGTDTWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +A + A ++ + AI ++
Sbjct: 583 KPGFAFDLDHTAYMQFASGFAYEETLDQANAIESTLHDMQLAKP 626
>gi|302385129|ref|YP_003820951.1| transcriptional regulator, CarD family [Clostridium saccharolyticum
WM1]
gi|302195757|gb|ADL03328.1| transcriptional regulator, CarD family [Clostridium saccharolyticum
WM1]
Length = 170
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 57/166 (34%), Gaps = 7/166 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKL--EFFVIAFDKDKMCLKVPVGKAIDIGMR 70
++ G++IV+ + G+ + + E+A M ++ + K + MR
Sbjct: 1 MYQVGDNIVFGSKGICRVEHVGVLEIADMPRNKMYYTLNPYFIKGSKFYTPVDNDKVIMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT----- 125
+ + + ++ + RR EY + D + ++++ ++
Sbjct: 61 PVIPKDEAMKLIDDIKNIDSLWVADEKRRESEYKEAMKRCDCRELVKIIKTIYFRKQSRL 120
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ + + + ++ A E+A ++ + +
Sbjct: 121 KDGKKLTTIDTKYFKLAEENFYGELAISLNMDVKAVKEFVRTRVKK 166
>gi|294650684|ref|ZP_06728038.1| transcription-repair coupling factor TRCF [Acinetobacter
haemolyticus ATCC 19194]
gi|292823475|gb|EFF82324.1| transcription-repair coupling factor TRCF [Acinetobacter
haemolyticus ATCC 19194]
Length = 1153
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + E+ EF + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLEIDDQDHEFLQLDYADA-AKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKLGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + A ++ + AI ++
Sbjct: 583 KPGFAFELDHIAYMQFASGFAYEETLDQANAIEATLHDMQLAKP 626
>gi|293404403|ref|ZP_06648397.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
gi|298380180|ref|ZP_06989785.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
gi|300896877|ref|ZP_07115367.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
gi|291428989|gb|EFF02014.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
gi|298279878|gb|EFI21386.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
gi|300359284|gb|EFJ75154.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
Length = 1164
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGYA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|121611273|ref|YP_999080.1| transcription-repair coupling factor [Verminephrobacter eiseniae
EF01-2]
gi|121555913|gb|ABM60062.1| transcription-repair coupling factor [Verminephrobacter eiseniae
EF01-2]
Length = 1174
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/190 (13%), Positives = 58/190 (30%), Gaps = 32/190 (16%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------ 44
+ ++++ + G+ +V+ AHG+G + ++ +
Sbjct: 470 STRRRKKQEQVSDVEALIKDLAELNLGDPVVHSAHGIGRYRGLVHMDLGQPNPDGTPALQ 529
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ D+ L VPV + I A + S + ++
Sbjct: 530 EFLHLEYADQAVLYVPVSQLQQISRYTGVGAD------------EAPLHKLGSGQWEKAR 577
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
K + AE++ D++ + E +L E + + AI
Sbjct: 578 RKAAEQVRDSAAELL-DIYARRAAREGHAF--RLATQDYEAFADEFGFEETADQRAAIEA 634
Query: 165 IEVNLSSKSS 174
+ ++ S
Sbjct: 635 VIQDMVSPRP 644
>gi|56413798|ref|YP_150873.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362721|ref|YP_002142358.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56128055|gb|AAV77561.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197094198|emb|CAR59702.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|325578622|ref|ZP_08148722.1| transcription-repair coupling factor [Haemophilus parainfluenzae
ATCC 33392]
gi|325159858|gb|EGC71988.1| transcription-repair coupling factor [Haemophilus parainfluenzae
ATCC 33392]
Length = 1149
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + + G+K E+ +I + + L VPVG I
Sbjct: 481 ELKIGQPVVHLDHGVGRYGGLVTLDTGGLKAEYLLINYAN-ESKLYVPVGSLHLISRYVG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E AK I +V +L +Q E
Sbjct: 540 GSDETA----------------PLHKLGNESWAKTRQKAAEKIRDVAAELLDVYAQREVK 583
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + AIN + ++ +
Sbjct: 584 KGFEFKYDREEFQQFAATFPFEETHDQAMAINAVISDMCQPKA 626
>gi|299133932|ref|ZP_07027126.1| transcription-repair coupling factor [Afipia sp. 1NLS2]
gi|298591768|gb|EFI51969.1| transcription-repair coupling factor [Afipia sp. 1NLS2]
Length = 1172
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 55/176 (31%), Gaps = 22/176 (12%)
Query: 3 FQQKRD---AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+K + + TG+ +V+ HG+G ++ EV+G + + L +
Sbjct: 486 SSRKVENFISEVTSLATGDLVVHVEHGIGRYIGLQTLEVSGAPHDCL-ELHYANNAKLYL 544
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV + + R+ W R + + I E+
Sbjct: 545 PVENIELLSRYGSEQGGV---------ELDRLGGGGWQARKAKLKNR--------IREIA 587
Query: 120 RDLHRTDSQPEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL + ++ + + + + + + AIN +L++
Sbjct: 588 GDLIKVAAERQLHEAPKFPVHQGLYDEFCARFPHDETEDQLGAINASLDDLNAGKP 643
>gi|254502678|ref|ZP_05114829.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11]
gi|222438749|gb|EEE45428.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11]
Length = 1161
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 22/177 (12%)
Query: 3 FQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K G + +V+ HG+G +K E G + + + L
Sbjct: 477 SRRKSKGANVITEATGLSESDLVVHVEHGIGRFIGLKTVEAIGAPHDCLELQYAGGD-KL 535
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + E L + G A Q AK+ L
Sbjct: 536 YLPVENIELLSRY---GSEDQEAQLDKLGGGA----------WQARKAKLKKRILEIADG 582
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + E + + + + AI+ + +LSS
Sbjct: 583 LIKTAAERALKTAPVV---ETPEGVYDEFATKFPYEETDDQLNAIDSVFEDLSSGRP 636
>gi|204930833|ref|ZP_03221706.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204320292|gb|EDZ05496.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|91200730|emb|CAJ73782.1| similar to transcription-repair coupling factor [Candidatus
Kuenenia stuttgartiensis]
Length = 1092
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 18/172 (10%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
Q + + G++IV+ HG+G I+ E G K E+ V+ + + VP K
Sbjct: 418 QTRAIDSFLDLKKGDYIVHVTHGIGRFLGIEIIEDDGCKREYLVLE-YDEGTKIYVPATK 476
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
+ + H + + M +RA+ A+A++ DL
Sbjct: 477 IELVQKYIGASGHKAK-----LDKIHSKSWEMRKKRAEH-----------AVADIASDLL 520
Query: 124 RTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ R + + + + I+ ++ SK
Sbjct: 521 HIQASRNAKEGITYPPDTKWQRDFESAFIYEETPDQLQVLETIKSDMQSKRP 572
>gi|296102868|ref|YP_003613014.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057327|gb|ADF62065.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 1148
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ IV+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHPGQPIVHLEHGVGRYQGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WARARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHD---KEQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 1165
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 53/182 (29%), Gaps = 25/182 (13%)
Query: 2 TFQQKRDAMRQ---------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
T ++KR + G ++V+ +G+G I++ +V G+ ++ I +
Sbjct: 480 TKRRKRTVKIKNADKIKSFTELEIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAG 539
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + + + + K
Sbjct: 540 GD-TLFVPVEQLDLVQKYVGPTDN------------PPKLNKLGGSEWLRAKRKAKKAVE 586
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ + ++S ++ + + + I I+ ++
Sbjct: 587 DLAKDLIQLYAKRQMVKGHAFSPDTPWQ---KEFEEQFPYEETEDQLRCIKEIKEDMEKD 643
Query: 173 SS 174
Sbjct: 644 RP 645
>gi|241760119|ref|ZP_04758217.1| transcription-repair coupling factor [Neisseria flavescens SK114]
gi|241319573|gb|EER56003.1| transcription-repair coupling factor [Neisseria flavescens SK114]
Length = 1134
Score = 91.8 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G + ++ G E ++ + + L VPV + I
Sbjct: 461 DLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EAQLYVPVSQLHLISR 519
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S AL + A K + A + +L+ +
Sbjct: 520 Y--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDTAAELLNLYAQRAAQ 566
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +L+
Sbjct: 567 SGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 609
>gi|218704525|ref|YP_002412044.1| transcription-repair coupling factor [Escherichia coli UMN026]
gi|218431622|emb|CAR12501.1| transcription-repair coupling factor [Escherichia coli UMN026]
Length = 1148
Score = 91.8 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGYA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|325297801|ref|YP_004257718.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
18170]
gi|324317354|gb|ADY35245.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
18170]
Length = 1122
Score = 91.8 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + G + + ++ + V + I
Sbjct: 430 ELSQFEPGDYVVHIDHGIGKFAGLVRI-PNGNTTQEVIKLVYQNDDVVFVSIHSLHKISK 488
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + + ++++ R +
Sbjct: 489 YKGKE------------GEQPRISKLGTGAWEKMKERTKTKIKDIARDLIKLYSRRKQEK 536
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + + ++ + +A ++ ++ S
Sbjct: 537 GFKYSPDSFLQ---HELEASFLYEDTPDQLKATQEVKADMESDRP 578
>gi|307308795|ref|ZP_07588491.1| transcription-repair coupling factor [Sinorhizobium meliloti
BL225C]
gi|307317268|ref|ZP_07596709.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83]
gi|306897356|gb|EFN28101.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83]
gi|306900801|gb|EFN31412.1| transcription-repair coupling factor [Sinorhizobium meliloti
BL225C]
Length = 1169
Score = 91.8 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 21/177 (11%)
Query: 2 TFQQKR----DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KR A G G ++V+ HG+G ++ E AG + + + L
Sbjct: 485 SKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYAD-DAKL 543
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + + L + G A Q AK+ L
Sbjct: 544 FLPVENIELLSRY---GSEGTDAVLDKLGGVA----------WQARKAKLKKRLLDMAGG 590
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R ++ + + + + + + +I+ + +L
Sbjct: 591 LIRIAAERHTRHAPVLAAQ---DGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRP 644
>gi|15965404|ref|NP_385757.1| transcription-repair coupling factor (TRCF) protein [Sinorhizobium
meliloti 1021]
gi|15074585|emb|CAC46230.1| Probable transcription-repair coupling factor (TRCF) protein
[Sinorhizobium meliloti 1021]
Length = 1171
Score = 91.8 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 21/177 (11%)
Query: 2 TFQQKR----DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KR A G G ++V+ HG+G ++ E AG + + + L
Sbjct: 487 SKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYAD-DAKL 545
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + + L + G A Q AK+ L
Sbjct: 546 FLPVENIELLSRY---GSEGTDAVLDKLGGVA----------WQARKAKLKKRLLDMAGG 592
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R ++ + + + + + + +I+ + +L
Sbjct: 593 LIRIAAERHTRHAPVLAAQ---DGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRP 646
>gi|77460087|ref|YP_349594.1| transcription-repair coupling factor [Pseudomonas fluorescens
Pf0-1]
gi|77384090|gb|ABA75603.1| transcription-repair coupling factor [Pseudomonas fluorescens
Pf0-1]
Length = 1149
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLTILEIDNQAAEFL-TLEYAENAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ S
Sbjct: 584 AFAD---PKADYATFSAGFPFEETPDQQSTIEAVREDMLSPKP 623
>gi|307295470|ref|ZP_07575306.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
L-1]
gi|306878509|gb|EFN09729.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
L-1]
Length = 1157
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K G+ +V+ HG+G + + VA + V L
Sbjct: 473 AKRKKNADAFLQELATLSPGDLVVHMDHGIGRYEGLTQIPVAKAAHDC-VALEYAGGDKL 531
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + R S++ V ++ W RR + I E
Sbjct: 532 YVPVENLE-VLSRYGSDSEGV--------SLDKLGGEAWQRRKARMKER--------IRE 574
Query: 118 VVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L +T ++ + +SA V + + AI + +L +
Sbjct: 575 IAGELLKTAAERALRAATVAEPDSAGYPAFVDRFPYQETEDQDRAIMDVVEDLGAGRP 632
>gi|295101119|emb|CBK98664.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
L2-6]
Length = 1161
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 17/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G+++V+ +HG+G I+ EV G ++ I + + L VPV + +
Sbjct: 482 SSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDV-LYVPVTQLDLLS 540
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ KL + + + A E+ ++L ++
Sbjct: 541 RYTAPGDEEKVKLAKLGGTE---------------WQRTRAKVKKATEEMAQELIELYAR 585
Query: 129 PEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + A I+ ++
Sbjct: 586 RRQATGYAFPADGEWQSDFESRFEYDETDDQLTATAEIKKDMEKGWP 632
>gi|293364521|ref|ZP_06611246.1| transcription-repair coupling factor [Streptococcus oralis ATCC
35037]
gi|291317029|gb|EFE57457.1| transcription-repair coupling factor [Streptococcus oralis ATCC
35037]
Length = 1167
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIQLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A V + + +I I+ ++
Sbjct: 595 FSADDDEQHA---FDDAFPYVETDDQLRSIEEIKRDMQDSHP 633
>gi|283833508|ref|ZP_06353249.1| transcription-repair coupling factor [Citrobacter youngae ATCC
29220]
gi|291071173|gb|EFE09282.1| transcription-repair coupling factor [Citrobacter youngae ATCC
29220]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHPGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDARLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|307702811|ref|ZP_07639761.1| transcription-repair coupling factor [Streptococcus oralis ATCC
35037]
gi|307623667|gb|EFO02654.1| transcription-repair coupling factor [Streptococcus oralis ATCC
35037]
Length = 1166
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 487 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIQLLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 546 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A V + + +I I+ ++
Sbjct: 594 FSADDDEQHA---FDDAFPYVETDDQLRSIEEIKRDMQDSHP 632
>gi|168233095|ref|ZP_02658153.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194470858|ref|ZP_03076842.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194457222|gb|EDX46061.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205332729|gb|EDZ19493.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|163791051|ref|ZP_02185472.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
gi|159873696|gb|EDP67779.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
Length = 1173
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++V+ HG+G T ++ E+ G+ ++ KD+ L +PV + +
Sbjct: 496 SELNPGDYVVHVNHGIGKYTGMETLEINGIYQDYM-SIIYKDEAKLFIPVTQLNLLQKYV 554
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SEA + + + G AK I ++ +L + E+
Sbjct: 555 SSEAKTPK--VNKLGGTE--------------WAKTKKKVATKIEDIADELIELYASREQ 598
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + I+ ++ K
Sbjct: 599 EVGYAFSPDDAYQEEFENAFPYTETDDQLRSTAEIKHDMEQKKP 642
>gi|16760091|ref|NP_455708.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142138|ref|NP_805480.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213425039|ref|ZP_03357789.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|25290813|pir||AI0644 transcription-repair coupling factor (TrcF) STY1256 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502385|emb|CAD08340.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29137767|gb|AAO69329.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|294786766|ref|ZP_06752020.1| transcription-repair coupling factor [Parascardovia denticolens
F0305]
gi|315226389|ref|ZP_07868177.1| transcription-repair coupling factor [Parascardovia denticolens DSM
10105]
gi|294485599|gb|EFG33233.1| transcription-repair coupling factor [Parascardovia denticolens
F0305]
gi|315120521|gb|EFT83653.1| transcription-repair coupling factor [Parascardovia denticolens DSM
10105]
Length = 1206
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 17/190 (8%), Positives = 55/190 (28%), Gaps = 23/190 (12%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV-----------------AGMKLE 44
++++ + G+ +V+ HG+G E+ + V AG
Sbjct: 495 PKRRRKAIDLVELKKGDFVVHEQHGIGRFVEMVRRPVRPVNTRIRGLAPSSRGAAGHDPS 554
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
++ + ++ K R +++ K + + + +
Sbjct: 555 ---DQAFREYLVIEYAPSKRGAPPDRLYIPTDQLDQVSKYIGAEEPKLNKLGGSDWSQTK 611
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
AK ++V+ ++S ++ + + + I+
Sbjct: 612 AKARKKVKEIAQDLVKLYAARQRTQGFAFSPDTPWQR---ELEEAFPYQETPDQLTTIDE 668
Query: 165 IEVNLSSKSS 174
++ ++
Sbjct: 669 VKADMEKPIP 678
>gi|293603936|ref|ZP_06686351.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
43553]
gi|292817773|gb|EFF76839.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
43553]
Length = 1160
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 47/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G+ +V+ HG+G + ++ ++EF + + L VPV + I
Sbjct: 491 DLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYAN-GSTLYVPVSQLHVIAR 549
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + K + + +L +Q
Sbjct: 550 YSGADPDAAP--LHQLGSGQ--------------WDKARRKAAKQVRDTAAELLALYAQR 593
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + AI + +++S
Sbjct: 594 AAREGFAFNLPLNDYQAFAEGFGFEETVDQAAAIEAVIADMTSGRP 639
>gi|158422845|ref|YP_001524137.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS
571]
gi|158329734|dbj|BAF87219.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS
571]
Length = 1171
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K E G + I + L +PV +
Sbjct: 494 SELTSLTAGDLVVHVDHGIGRFIGLKAIEAMGAPHDCLEIHYAGGD-KLFLPVENLELLT 552
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ E L + G Q A++ E+++
Sbjct: 553 RY---GSEDTEAQLDKLGGGG----------WQARKARMKKRIREMAGELIKIAAARQLS 599
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI+ + +LSS
Sbjct: 600 EAPRLVPAAGL---YDEFRARFPYEETDDQEAAISAVLDDLSSGHP 642
>gi|87121321|ref|ZP_01077211.1| Transcription-repair coupling factor [Marinomonas sp. MED121]
gi|86163478|gb|EAQ64753.1| Transcription-repair coupling factor [Marinomonas sp. MED121]
Length = 1137
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R +V+ HGVG + E+ G + E + ++ L VPV I
Sbjct: 469 TELRLNAPVVHIDHGVGRYLGLTNLEIDGQETE-LLTLGYANEAKLYVPVSSLQLISRYT 527
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ + + + + K AE++ + +S+
Sbjct: 528 GADEDHAP------------LHKLGTEKWSQAKQKAAEKARDTAAELLEIYAKRESRQGH 575
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ + + + + AI+ + ++ SK
Sbjct: 576 AFSK---PDQEYALFSQGFPFEETPDQQLAISAVIQDMVSKKP 615
>gi|322616592|gb|EFY13501.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619893|gb|EFY16767.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622461|gb|EFY19306.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629421|gb|EFY26198.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633907|gb|EFY30645.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636838|gb|EFY33541.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641362|gb|EFY38001.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645127|gb|EFY41656.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322652291|gb|EFY48647.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655642|gb|EFY51944.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660947|gb|EFY57177.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665467|gb|EFY61655.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667556|gb|EFY63717.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673650|gb|EFY69752.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677576|gb|EFY73640.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679759|gb|EFY75798.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687232|gb|EFY83204.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194018|gb|EFZ79219.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199427|gb|EFZ84520.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323208844|gb|EFZ93782.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323210654|gb|EFZ95533.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217818|gb|EGA02533.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323228043|gb|EGA12184.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229621|gb|EGA13744.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232846|gb|EGA16942.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240118|gb|EGA24162.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242895|gb|EGA26916.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323255555|gb|EGA39314.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323261591|gb|EGA45168.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266985|gb|EGA50470.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272089|gb|EGA55503.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|260219542|emb|CBA26387.1| Transcription-repair-coupling factor [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 1159
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 34/191 (17%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGM------KLE 44
T ++++ + G+ +V+ +HG+G + ++ +L+
Sbjct: 455 TTRRRKKQEQVSDVEALIKDLSELNVGDPVVHSSHGIGRYRGLMHMDMGNKNAAGEPELQ 514
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ DK L VPV + I A E L +
Sbjct: 515 EFLHLEYADKATLYVPVSQLQLISRYTGVSAD--EAPLHRLGSGQ--------------W 558
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAIN 163
K + + +L ++ + + + + AI+
Sbjct: 559 EKAKRKAAEQVRDSAAELLNIYARRAAREGHPFRYSPGDYETFANDFGFEETADQKAAIH 618
Query: 164 LIEVNLSSKSS 174
+ ++ S
Sbjct: 619 CVIQDMISPRP 629
>gi|161614554|ref|YP_001588519.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363918|gb|ABX67686.1| hypothetical protein SPAB_02303 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|154175141|ref|YP_001408519.1| transcription-repair coupling factor [Campylobacter curvus 525.92]
gi|112803058|gb|EAU00402.1| transcription-repair coupling factor [Campylobacter curvus 525.92]
Length = 981
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 16/169 (9%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
++ + + +++V+ +G+G +++ V G EF VI ++ L +PV
Sbjct: 336 KRASLVVDELKINDYVVHEDYGIGRFLGLEKITVLGATKEFVVI-AYQNDDKLLLPVEHL 394
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I + L + GKA + R + L IA + +
Sbjct: 395 NLIDRY--IAQNGSVAVLDRL-GKASFAKIKEKVREK----------LFVIASKIVAMAA 441
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+ E + V+ + + +A+ I +L S
Sbjct: 442 KRELIAGKVIEKNDLE--YLKFVQNAGFDYTTDQQKAVEEIMSDLKSTR 488
>gi|168822320|ref|ZP_02834320.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205341236|gb|EDZ28000.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|320086344|emb|CBY96117.1| Transcription-repair-coupling factor TRCF; ATP-dependent helicase
mfd [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|167754859|ref|ZP_02426986.1| hypothetical protein CLORAM_00363 [Clostridium ramosum DSM 1402]
gi|237735409|ref|ZP_04565890.1| transcriptional regulator [Mollicutes bacterium D7]
gi|167704909|gb|EDS19488.1| hypothetical protein CLORAM_00363 [Clostridium ramosum DSM 1402]
gi|229381154|gb|EEO31245.1| transcriptional regulator [Coprobacillus sp. D7]
Length = 166
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 65/166 (39%), Gaps = 6/166 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI-DIGMRK 71
++ G+ ++Y GV I +I +++ + +++ + D + + VP MRK
Sbjct: 1 MYKIGDTVLYGREGVCKIKDIVTRKLNNIDKQYYFLTPLDDHITILVPTDNEEALSKMRK 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ--- 128
+ + +K + + + R Q+Y+ IN G+ + ++ + L+ +
Sbjct: 61 VLSKKDIYELIKTMPDNETIWINDKNIRKQKYNDIINHGNHEQLVKLTKTLYLNKQKQEK 120
Query: 129 --PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ ++ ++A + E ++ + + I L
Sbjct: 121 AGKKFHVQDQHFLQTAEKMLYDEFCHTLNLKPEQILPFILETLKEN 166
>gi|198242225|ref|YP_002215922.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197936741|gb|ACH74074.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|326623670|gb|EGE30015.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|94495555|ref|ZP_01302135.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
gi|94424943|gb|EAT09964.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
Length = 1169
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K G+ +V+ HG+G + + V+ + V L
Sbjct: 484 AKRKKNADAFLQELATLTPGDLVVHRDHGIGRYDGLTQIPVSKAAHDC-VALEYAGGDKL 542
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + + +L + G+A W RR + + I E
Sbjct: 543 YVPVENLEVLSRY---GSETDGVSLDRLGGEA------WQRRKAKMKER--------IRE 585
Query: 118 VVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L +T + + + A V + + AI+ + +L +
Sbjct: 586 IAGELLKTAAARALRPATVAEPDVAGYPAFVDRFPYQETDDQDRAISDVIEDLGAGKP 643
>gi|11992016|gb|AAG42403.1|AF300471_6 Mfd protein [Zymomonas mobilis subsp. mobilis ZM4]
Length = 1145
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/178 (14%), Positives = 48/178 (26%), Gaps = 23/178 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K A G+ +V+ HG+G + V + V + L
Sbjct: 458 AKKRKSADAFMAELATLSIGDLVVHSDHGIGCYDGLVSIPVGNAPHDC-VALSYQGGDKL 516
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + S L + G A + Y + GD
Sbjct: 517 YVPVENIDTLSRYCNSSEKAP--FLDKLGGVAWQAXKSKMKXHSRY-CRSVDGDCCQ--- 570
Query: 118 VVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S ++ + A V + + AI+ + +L+
Sbjct: 571 -----------KGVXTSPCRIGDPASYPVFVDRFPYQETEDQEHAISDVIEDLAKGKP 617
>gi|16764571|ref|NP_460186.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62179736|ref|YP_216153.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|167991999|ref|ZP_02573098.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168264274|ref|ZP_02686247.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|194446626|ref|YP_002040470.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449956|ref|YP_002045215.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197250617|ref|YP_002146826.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|224584278|ref|YP_002638076.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238910964|ref|ZP_04654801.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16419734|gb|AAL20145.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62127369|gb|AAX65072.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|194405289|gb|ACF65511.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194408260|gb|ACF68479.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197214320|gb|ACH51717.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|205329787|gb|EDZ16551.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205347253|gb|EDZ33884.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224468805|gb|ACN46635.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261246428|emb|CBG24237.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267992993|gb|ACY87878.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157757|emb|CBW17249.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312912204|dbj|BAJ36178.1| transcriptional repressor UlaR [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|322714206|gb|EFZ05777.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323129485|gb|ADX16915.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332988107|gb|AEF07090.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|33602793|ref|NP_890353.1| transcription-repair coupling factor [Bordetella bronchiseptica
RB50]
gi|33577235|emb|CAE35792.1| transcription-repair coupling factor [Bordetella bronchiseptica
RB50]
Length = 1151
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 29/186 (15%)
Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
+T + KR R R G+ +V+ HG+G + ++ ++EF +
Sbjct: 462 VTRRGKRTQERTSNVEAMVRDLAELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLE 521
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
+ L VPV + I ++ L + K
Sbjct: 522 YA-SGSTLYVPVSQLHVIARYSGADPDAAP--LHQLGSGQ--------------WDKARR 564
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVN 168
+ + +L +Q +L S + + AI + ++
Sbjct: 565 KAARQVRDTAAELLALYAQRAAREGYAFKLPMSDYEAFAEGFGFEETPDQAAAIQAVIMD 624
Query: 169 LSSKSS 174
++S
Sbjct: 625 MTSGRP 630
>gi|33592030|ref|NP_879674.1| transcription-repair coupling factor [Bordetella pertussis Tohama
I]
gi|33571674|emb|CAE41167.1| transcription-repair coupling factor [Bordetella pertussis Tohama
I]
gi|332381446|gb|AEE66293.1| transcription-repair coupling factor [Bordetella pertussis CS]
Length = 1143
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 29/186 (15%)
Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
+T + KR R R G+ +V+ HG+G + ++ ++EF +
Sbjct: 454 VTRRGKRTQERTSNVEAMVRDLAELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLE 513
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
+ L VPV + I ++ L + K
Sbjct: 514 YA-SGSTLYVPVSQLHVIARYSGADPDAAP--LHQLGSGQ--------------WDKARR 556
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVN 168
+ + +L +Q +L S + + AI + ++
Sbjct: 557 KAARQVRDTAAELLALYAQRAAREGYAFKLPMSDYEAFAEGFGFEETPDQAAAIQAVIMD 616
Query: 169 LSSKSS 174
++S
Sbjct: 617 MTSGRP 622
>gi|300974586|ref|ZP_07172647.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
gi|300410528|gb|EFJ94066.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
Length = 1164
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 492 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K A ++ + ++ +
Sbjct: 551 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAGLLDIYAQRAAKEGFA 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 599 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 637
>gi|168467175|ref|ZP_02701017.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|195630325|gb|EDX48951.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|168239121|ref|ZP_02664179.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194738344|ref|YP_002114221.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194713846|gb|ACF93067.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197288100|gb|EDY27487.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
DSM 574]
gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
DSM 574]
Length = 1169
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G + + G++ ++ + + + L VP + +
Sbjct: 502 DLKAGDYVVHVNHGIGRYLGMVSLNIGGLQKDYLQLQYAGED-KLYVPTDQVGMLQKYLG 560
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+EA + L + G + AK+ E++ + +
Sbjct: 561 AEADHPK--LSRLGGTE----------WAKAKAKVKEAVRDMAKELLELYAARQTVKGHA 608
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S +++ + + + AI ++ ++ +
Sbjct: 609 FSPDTPWQA---EFEAQFPYEETPDQLRAIAEVKRDMEKERP 647
>gi|302336465|ref|YP_003801672.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
gi|301320305|gb|ADK68792.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
Length = 1171
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+++V+ HG+ ++I QEVAG + ++F++ + L VP+ + I R +
Sbjct: 507 FKPGDYVVHATHGIALFSDIVRQEVAGRERDYFLLEYAGGD-KLFVPLEQVDRI-TRYVG 564
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
R +L A R RA + DL V P
Sbjct: 565 PDGSSPRLTRL--NTADWSRATGKARASAKRLAFDLVDLYTRRSAVSGHAFAPDTP---- 618
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A M +I + AI I+ ++ +
Sbjct: 619 --------AQQEMESSFPYEVTIDQARAIADIKADMEASKP 651
>gi|200390896|ref|ZP_03217507.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|199603341|gb|EDZ01887.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|152978238|ref|YP_001343867.1| transcription-repair coupling factor [Actinobacillus succinogenes
130Z]
gi|150839961|gb|ABR73932.1| transcription-repair coupling factor [Actinobacillus succinogenes
130Z]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + E G+K E+ ++ + L VPV I
Sbjct: 480 ELKIGQPVVHLEHGVGRYGGLVTLENGGVKAEYLLLTYAN-DAKLYVPVAGLHLISRYVG 538
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + ++Q +
Sbjct: 539 GNEETAP------------LHKLGSDAWSKARRKAAEKIRDVAAELLDVYAQREAQKGFA 586
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 587 FQYER---EEFQAFSATFPFEETFDQALAINAVISDMCQPKA 625
>gi|207857277|ref|YP_002243928.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|206709080|emb|CAR33413.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|167623544|ref|YP_001673838.1| transcription-repair coupling factor [Shewanella halifaxensis
HAW-EB4]
gi|167353566|gb|ABZ76179.1| transcription-repair coupling factor [Shewanella halifaxensis
HAW-EB4]
Length = 1157
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV ++ + G+ E+ V+ L VPV I +
Sbjct: 484 ELKVGQPIVHLDHGVARYQGLETLDTGGLVAEYLVLE-YSGGDKLYVPVSSLHLISRYSV 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ E AK + I +V +L ++ +
Sbjct: 543 GPDE----------------EATLNKLGNETWAKAKKKAVEKIRDVAAELLDVYARRQAR 586
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + ++ + +IN + ++ S ++
Sbjct: 587 PGEACHIDQEEYAQFANSFPYEETVDQETSINAVLEDMRSPTA 629
>gi|205353050|ref|YP_002226851.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205272831|emb|CAR37757.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326628129|gb|EGE34472.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|197265670|ref|ZP_03165744.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197243925|gb|EDY26545.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
Length = 1148
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|325144576|gb|EGC66875.1| transcription-repair coupling factor [Neisseria meningitidis
M01-240013]
gi|325205943|gb|ADZ01396.1| transcription-repair coupling factor [Neisseria meningitidis
M04-240196]
Length = 1296
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 50/179 (27%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ E ++ + +
Sbjct: 609 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGDETNEMMLLEYAG-EA 667
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 668 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 714
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 715 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQTKP 771
>gi|209542295|ref|YP_002274524.1| transcription-repair coupling factor [Gluconacetobacter
diazotrophicus PAl 5]
gi|209529972|gb|ACI49909.1| transcription-repair coupling factor [Gluconacetobacter
diazotrophicus PAl 5]
Length = 1156
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K+ A G+ +V+ +G+G ++ V + + L
Sbjct: 466 PRRRKKADQFIAEASEIAEGDLVVHQDYGIGRYDGLETIGVGTAPHDCLRL-IYDGNEKL 524
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + AL + G + Q A++ E
Sbjct: 525 FLPVENIELLSR---FGSDQAGVALDKLGGAS----------WQNRKARMKQRIRDMAGE 571
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + S + + + V + + AI + ++ S
Sbjct: 572 LIRTAALRALREAPSMTPAEGM---WDEFCARFPFVETEDQSRAIADVLEDMGSGRP 625
>gi|162147670|ref|YP_001602131.1| transcription-repair coupling factor [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786247|emb|CAP55829.1| putatve transcription-repair coupling factor [Gluconacetobacter
diazotrophicus PAl 5]
Length = 1131
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K+ A G+ +V+ +G+G ++ V + + L
Sbjct: 441 PRRRKKADQFIAEASEIAEGDLVVHQDYGIGRYDGLETIGVGTAPHDCLRL-IYDGNEKL 499
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + AL + G + Q A++ E
Sbjct: 500 FLPVENIELLSR---FGSDQAGVALDKLGGAS----------WQNRKARMKQRIRDMAGE 546
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + S + + + V + + AI + ++ S
Sbjct: 547 LIRTAALRALREAPSMTPAEGM---WDEFCARFPFVETEDQSRAIADVLEDMGSGRP 600
>gi|322433996|ref|YP_004216208.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
gi|321161723|gb|ADW67428.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
Length = 1233
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 18/177 (10%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++ + + + G+++V+ HG+ ++ E +I D+ L
Sbjct: 518 ATRKSKTSAFISDFRDLAVGDYVVHVEHGIAQYCGLRVLEEDTDNPLELMILEFADQAKL 577
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ + I + +E G A V + + Q+ A++ E
Sbjct: 578 YVPLTRLDLIQKYRSTET-----------GPAPVLNKLGNPAWQKTKARVKKAMADMAGE 626
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + ++S + + + AI I+ ++ S
Sbjct: 627 LIKLYAQRKAAQGTAFSPDNNLQR---EFEDAFPFNETDDQLAAIADIKRDMESTQP 680
>gi|291545188|emb|CBL18297.1| transcription-repair coupling factor [Ruminococcus sp. 18P13]
Length = 1156
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 17/159 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ +V+ HG+G I++ E+ G+ ++ I + + L VPV + + +
Sbjct: 490 GDLVVHALHGIGRFVGIRKLELEGVTKDYITIQYAGKDV-LYVPVTQLDMVSRYIGTRDD 548
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
+ KL + K + A ++ +L ++ EK+
Sbjct: 549 DHVKLHKLSSVE---------------WQKTRNNVKRAAKDMADELIALYAKREKAEGFA 593
Query: 137 QLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + + V + + + I I+ ++
Sbjct: 594 FLPDDEIQAEFEERFPYVETDDQLQCIADIKADMQKPHP 632
>gi|223983659|ref|ZP_03633835.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM
12042]
gi|223964356|gb|EEF68692.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM
12042]
Length = 1147
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q + G+ IV+ HGVG I +E G+ +F + K L VP+ + + RK
Sbjct: 477 QELQPGDFIVHSQHGVGQYLGIVTREFNGVHKDFLRV-VYKGNDELLVPLEQFRLV--RK 533
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V L + ++ ++ +V+ + +
Sbjct: 534 FVSREGVVPKLNKLGSHD----------WEKTKQRLKDNVNEIADRLVKLYSQREENIGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + + + + A+ I+ ++
Sbjct: 584 AYGPDTPLQ---QEFEDDFDYDLTPDQALAVQEIKKDMMQPKP 623
>gi|305665487|ref|YP_003861774.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
gi|88710243|gb|EAR02475.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
Length = 1172
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRD---AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ G+++ + HG+G +++ +V G K E + D+ L V
Sbjct: 471 AKKQAITLTELNRLEVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKL-MYGDRDILYVS 529
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I G A + S ++ K S ++++
Sbjct: 530 IHSLHKISK------------FNGKDGAAPKIYKLGSAAWKKLKQKTKSRVKQIAFDLIK 577
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Y + + ++ + +A ++ ++ S+
Sbjct: 578 VYAKRRLEKGFQYDPDSYLQL---ELEASFIYEDTPDQGKATEDVKKDMESERP 628
>gi|317491827|ref|ZP_07950262.1| transcription-repair coupling factor [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920261|gb|EFV41585.1| transcription-repair coupling factor [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 1153
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 55/183 (30%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G+K E+ ++ +
Sbjct: 461 SRRRQDNRRTINTDTLIRNLAELSIGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILTYA 520
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV + + S K
Sbjct: 521 G-DAKLYVPVSSLYLLSRYSGGADESAP------------LHKLGSDAWTRARQKAAEKV 567
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ ++P ++ + + A + + + AIN + ++
Sbjct: 568 RDVAAELLDIYAMRAAKPGFAFKQDR---EAYQMFCQSFPFETTPDQSMAINAVLSDMCQ 624
Query: 172 KSS 174
+
Sbjct: 625 PLA 627
>gi|319426232|gb|ADV54306.1| transcription-repair coupling factor [Shewanella putrefaciens 200]
Length = 1162
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + + L VPV I +
Sbjct: 488 ELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSNLHLISRYSV 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ E AK + + I +V +L ++ +
Sbjct: 547 GADE----------------DAHLNKLGNETWAKAKNKAIEKIRDVAAELLDVYARRQAR 590
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E Q+ E + + ++ + AI+ + ++ S
Sbjct: 591 PGESCQIDEEEYAQFAQGFPFEETVDQESAIHAVLADMRSP 631
>gi|295104237|emb|CBL01781.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
SL3/3]
Length = 1171
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 54/167 (32%), Gaps = 17/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G+++V+ +HG+G I+ EV G ++ + + + L VPV + +
Sbjct: 483 SSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGATKDYLKVQYSGSDV-LYVPVTQLDLLS 541
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ KL + + + A E+ ++L ++
Sbjct: 542 RYTAPGDEEKVKLAKLGGTE---------------WQRTRAKVKKATEEMAQELIELYAR 586
Query: 129 PEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + R + + A I+ ++
Sbjct: 587 RRQATGYAFPPDGDWQRDFETRFDYDETDDQLHATAEIKQDMEKGYP 633
>gi|310829353|ref|YP_003961710.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
gi|308741087|gb|ADO38747.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
Length = 1140
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 19/171 (11%), Positives = 57/171 (33%), Gaps = 15/171 (8%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+ ++ G+++V+ HG+G I++ + + + VI + L +PV +
Sbjct: 463 KGRKIDSFAELHVGDYVVHDVHGIGIYLGIEQLTIDNVTKDLMVIEYAG-DARLYIPVEQ 521
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
+ + + + M + Q+ K E++
Sbjct: 522 MDSVQVYIGTGGDKKPKV-----------NQMGNPDWQKAKNKAQKAVEDMADELIALYA 570
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S ++S ++ + + + + + I+ ++ S+
Sbjct: 571 KRRSMKGYAFSPDTSWQ---KEFEDDFPYIETEDQLRCVEEIKADMESEIP 618
>gi|114704427|ref|ZP_01437335.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi
HTCC2506]
gi|114539212|gb|EAU42332.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi
HTCC2506]
Length = 1172
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G G+ +V+ HG+G +K+ E AG + + + L +PV +
Sbjct: 494 SEVSGLDEGDIVVHVDHGIGRFVGLKQIEAAGAPHDCLELRYAG-DDRLFLPVENIELLS 552
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
E L + G A Q AK+ L ++R +
Sbjct: 553 RY---GGEGTEATLDRLGGGA----------WQARKAKLKKRLLDMADGLIRVAAERAMR 599
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI+ + +L++
Sbjct: 600 GAPQL---NPPEGLFDEFAARFPYEETDDQANAIDAVVDDLAAGRP 642
>gi|70729336|ref|YP_259073.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
gi|68343635|gb|AAY91241.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
Length = 1149
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + E+ EF + L VPV I
Sbjct: 477 TELREGAPVVHIDHGVGRYLGLATLEIDNQAAEFL-TLEYAEGAKLYVPVANLHLIARYT 535
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 536 GSDDALAP------------LHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 583
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ S
Sbjct: 584 AFAD---PKADYATFSAGFPFEETPDQQSTIEAVREDMLSGKP 623
>gi|145298863|ref|YP_001141704.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851635|gb|ABO89956.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 1154
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG ++ + G+ EF + + L VPV I
Sbjct: 484 ELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGD-KLFVPVTNLHLISRYTG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S+ + + K AE++ ++ +
Sbjct: 543 SDNPPSHKL--------------GGEAWVKARRKAAEKVRDVAAELLDVYALRAARHGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + A + + + AIN + ++
Sbjct: 589 FQHDR---EAYRQFAAGFPFEETEDQLNAINAVLGDMCQAK 626
>gi|218885389|ref|YP_002434710.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756343|gb|ACL07242.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1197
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ +GVG + ++ G+ +F ++ + + L +PV + I R
Sbjct: 514 DDLSPGDLLVHRDYGVGRFGGLHRMDLGGVANDFLLLEYAGED-RLYLPVDRLSLI-QRF 571
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V KL + K A++V+
Sbjct: 572 KGGDDSVPSLDKLGGSG-----------WRACKDKARKAIEKIAADLVQMYAYRKVAKGY 620
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + + AI + ++
Sbjct: 621 RYG---PLGELYREFEASFGFEETPDQARAIQDVLDDMEKPEP 660
>gi|56460626|ref|YP_155907.1| transcription-repair coupling factor [Idiomarina loihiensis L2TR]
gi|56179636|gb|AAV82358.1| Transcription-repair coupling factor, superfamily II helicase
[Idiomarina loihiensis L2TR]
Length = 1160
Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + + + EF V L VPV +
Sbjct: 487 ELQAGQPVVHLDHGVGRYQGLTTLDAGNVTTEF-VTIEYAGGAKLYVPVANLNVLSRYSG 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E + +RA E + +A + D++
Sbjct: 546 GEESHAP-----LNKLGNDSWDKAKKRAAE--------KVRDVAAELLDIYARREAKPGY 592
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E R +I + AI+ ++ ++ +
Sbjct: 593 AFNIN--EEDYQRFAAGFPFEETIDQQTAIDAVKQDMQQPRA 632
>gi|332291666|ref|YP_004430275.1| transcription-repair coupling factor [Krokinobacter diaphorus
4H-3-7-5]
gi|332169752|gb|AEE19007.1| transcription-repair coupling factor [Krokinobacter diaphorus
4H-3-7-5]
Length = 1137
Score = 91.4 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 57/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G E + ++ L +
Sbjct: 423 AKKQSITLKELSHLSVGDYVTHIDHGIGKFGGLQKIDVEGKPQEAIKL-IYGERDILYLS 481
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S+ ++ AK S +++
Sbjct: 482 IHSLHKITKYNG------------KDGKPPQIYKLGSQAWKKLKAKTKSRVKHVAFNLIK 529
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q ++ + + + ++ + A ++ ++ S+
Sbjct: 530 LYAKRRLQKGYAFGPDTHMQ---HELEASFIYEDTPDQSSATEDVKRDMESERP 580
>gi|293391342|ref|ZP_06635676.1| transcription-repair coupling factor [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951876|gb|EFE01995.1| transcription-repair coupling factor [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 1152
Score = 91.4 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + E G+K E+ ++ + L VPV I
Sbjct: 482 ELQIGQPVVHLEHGVGRYGGLVTLENGGVKAEYLLLNYAN-NSKLYVPVASLHLISRYVG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E K S I +V +L +Q E
Sbjct: 541 GSDETA----------------PLHKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQ 584
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + AIN + +++ +
Sbjct: 585 KGFSFQYDREEFQQFTATFPFEETHDQLMAINAVISDMTQPKA 627
>gi|323222138|gb|EGA06523.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
Length = 1049
Score = 91.4 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 377 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 435
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 436 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 483
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 484 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 522
>gi|213962106|ref|ZP_03390370.1| transcription-repair coupling factor [Capnocytophaga sputigena
Capno]
gi|213955112|gb|EEB66430.1| transcription-repair coupling factor [Capnocytophaga sputigena
Capno]
Length = 1110
Score = 91.4 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ EV G + E + D+ L V
Sbjct: 416 AKKQAITLKELMQLEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKL-IYGDRDVLFVS 474
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S + K + +++
Sbjct: 475 IHALHKITKYNG------------KDGKPPKIYKLGSGAWKALKQKTKARVKEIAFNLIQ 522
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ + N + ++ + +A ++ ++ S
Sbjct: 523 LYAKRKEAQGFAFAHDSYMQ---NELEASFLYEDTPDQSKATAEVKADMESSKP 573
>gi|213860062|ref|ZP_03385766.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 919
Score = 91.4 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 248 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 306
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 307 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 354
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 355 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 393
>gi|82777273|ref|YP_403622.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
gi|309788186|ref|ZP_07682792.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
gi|81241421|gb|ABB62131.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
gi|308924038|gb|EFP69539.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
Length = 1148
Score = 91.4 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GVEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHER---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|268589233|ref|ZP_06123454.1| transcription-repair coupling factor [Providencia rettgeri DSM
1131]
gi|291315491|gb|EFE55944.1| transcription-repair coupling factor [Providencia rettgeri DSM
1131]
Length = 1147
Score = 91.4 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+K E+ ++ + L VPV I
Sbjct: 475 ELRPGQPVVHIEHGVGRYQGLITLEAGGIKAEYLILTYAG-DDKLYVPVSSLHLISRYAG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S K AE++ + ++ +
Sbjct: 534 GADENAP------------LHKLGSDSWGRARQKAAEKVRDVAAELLDIYAQRAAKAGFA 581
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AIN + ++ +
Sbjct: 582 FKHD---KQQYQEFCQGFPFETTPDQEVAINAVLSDMCQPLA 620
>gi|301156034|emb|CBW15505.1| transcription-repair coupling factor [Haemophilus parainfluenzae
T3T1]
Length = 1149
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + + G+K E+ +I + + L VPVG I
Sbjct: 481 ELKIGQPVVHLDHGVGRYGGLVTLDTGGLKAEYLLINYAN-ESKLYVPVGSLHLISRYVG 539
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E +K I +V +L +Q E
Sbjct: 540 GSDETA----------------PLHKLGNESWSKTRQKAAEKIRDVAAELLDVYAQREVK 583
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + AIN + ++ +
Sbjct: 584 KGFEFKYDREEFQQFAATFPFEETHDQAMAINAVISDMCQPKA 626
>gi|238897365|ref|YP_002923042.1| transcription-repair ATP-dependent coupling factor [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465120|gb|ACQ66894.1| transcription-repair ATP-dependent coupling factor [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 1151
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R+G+ +V+ HGVG + E G++ E+ ++ + + L VPV I
Sbjct: 477 ELRSGQPVVHLEHGVGRYLGLINLETGGIQAEYLILGYANED-KLYVPVSSLNVITRYSG 535
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S L + G A W++ ++ K+ +A + ++ +
Sbjct: 536 SSDE--NAPLHKLGGDA------WTKACKKTLEKVR-----DVAAELLGIYSQRAAKPGF 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + +AI+ + ++S +
Sbjct: 583 SFKKD--SEQYQLFCESFPFETTPDQEQAIHAVLNDMSQPLA 622
>gi|322412921|gb|EFY03828.1| putative transcription-repair coupling factor [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 1166
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+G+++V+ HG+G I+ ++ G+ + +V ++ + +PV + +
Sbjct: 487 ELASGDYVVHNVHGIGRFLGIETIQIQGIHRD-YVTIQYQNSDRISLPVDQISSLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++ Q
Sbjct: 546 A------------DGKEPKVNKLNDGRFQKTKQKVAKQVEDIADNLLALYAERSQQKGFQ 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + A V + + +IN I+ ++ S
Sbjct: 594 FSPDDDLQWS---FDDDFAFVETEDQIRSINEIKADMESVQP 632
>gi|322377900|ref|ZP_08052388.1| transcription-repair coupling factor [Streptococcus sp. M334]
gi|321281076|gb|EFX58088.1| transcription-repair coupling factor [Streptococcus sp. M334]
Length = 1169
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A V + + ++ I+ ++
Sbjct: 595 FSSDDEDQHA---FDDAFPYVETDDQLRSVEEIKRDMQDSQP 633
>gi|160944870|ref|ZP_02092097.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii
M21/2]
gi|158444054|gb|EDP21058.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii
M21/2]
Length = 1171
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 54/167 (32%), Gaps = 17/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G+++V+ +HG+G I+ EV G ++ + + + L VPV + +
Sbjct: 483 SSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGATKDYLKVQYSGSDV-LYVPVTQLDLLS 541
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ KL + + + A E+ ++L ++
Sbjct: 542 RYTAPGDEEKVKLAKLGGTE---------------WQRTRAKVKKATEEMAQELIELYAR 586
Query: 129 PEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + R + + A I+ ++
Sbjct: 587 RRQATGYAFPPDGDWQRDFETRFDYDETDDQLHATAEIKQDMEKGYP 633
>gi|332092875|gb|EGI97943.1| transcription-repair coupling factor [Shigella dysenteriae 155-74]
Length = 1148
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ + +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQQLA 621
>gi|293414407|ref|ZP_06657056.1| transcription-repair coupling factor [Escherichia coli B185]
gi|291434465|gb|EFF07438.1| transcription-repair coupling factor [Escherichia coli B185]
Length = 1148
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +VY HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVYLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|222528653|ref|YP_002572535.1| transcription-repair coupling factor [Caldicellulosiruptor bescii
DSM 6725]
gi|222455500|gb|ACM59762.1| transcription-repair coupling factor [Caldicellulosiruptor bescii
DSM 6725]
Length = 1141
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+ +V+ HG+G ++ V G E +V + L VP I
Sbjct: 480 EDLKPGDFVVHRTHGIGKFLGFEKITVEGTTKE-YVKLEYANSSYLYVPTTNLDVIEKYI 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + S+ Q+ K+ I ++V +
Sbjct: 539 GT------------DDVQPKLSKLGSQEWQKQKQKVRKSLEIVAKDLVELYAKRQLGKGF 586
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ L++ + + + +AI I+ ++ S+
Sbjct: 587 KFSKDTLWQ---KEFEEKFPYTETEGQLQAIEEIKRDMESEKP 626
>gi|170717838|ref|YP_001784898.1| transcription-repair coupling factor [Haemophilus somnus 2336]
gi|168825967|gb|ACA31338.1| transcription-repair coupling factor [Haemophilus somnus 2336]
Length = 1144
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + E G+K EF ++ + L VPV I
Sbjct: 477 ELKIGQPVVHLEHGVGRYGGLVSLENGGIKAEFLLLEYAN-NSKLYVPVTSLHLISRYVG 535
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + AK + I +V +L +Q E
Sbjct: 536 GSDE----------------NAPLHKLGNDSWAKARHKAIEKIRDVAAELLDVYAQREVK 579
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + AIN + ++ K +
Sbjct: 580 KGFAFQYDKEEFKQFAATFPFEETPDQKMAINAVISDMCQKKA 622
>gi|255691931|ref|ZP_05415606.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
17565]
gi|260622336|gb|EEX45207.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
17565]
Length = 1123
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F ++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNDDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 538 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 579
>gi|329889842|ref|ZP_08268185.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC
11568]
gi|328845143|gb|EGF94707.1| transcription-repair-coupling factor [Brevundimonas diminuta ATCC
11568]
Length = 744
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 18/178 (10%), Positives = 50/178 (28%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R + G+ +V+ HG+G ++ E+ + + + + L
Sbjct: 59 PKRKRRASNFLAEASALTAGDLVVHLDHGIGRYEGLRTLEIQEAPHDCLELLYAG-ESKL 117
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + R+ W R + ++ +
Sbjct: 118 YLPVENIDLLTRYGTDAEGVQL---------DRLGGAGWQARKAKAKERLRA-------- 160
Query: 118 VVRDLHRTDSQPEKSYSE-RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L ++ S+ + + + AI + +L +
Sbjct: 161 MAEGLIALAAKRALRVSDAITPPAGLFDEFCARFPYEETDDQLNAIGDVLEDLGKGTP 218
>gi|298373454|ref|ZP_06983443.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
str. F0058]
gi|298274506|gb|EFI16058.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
str. F0058]
Length = 1109
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 18/177 (10%), Positives = 55/177 (31%), Gaps = 20/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T ++ + A + G+++V+ HG+G + ++ G E + +
Sbjct: 410 TARRGKAAMLIKELNQLKPGDYVVHHDHGIGQFAGLLRADINGKPQEVIKLVYKGGD--- 466
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+ V + + K + L + A + + + +
Sbjct: 467 IIFVNISSLHKIAKYHGKDDTQPTLSKLGTGA----------WERLKERTKTKVKDIARD 516
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ Q YS ++ + ++ + +A ++ ++ S
Sbjct: 517 LIKLYALRLEQKGFEYSPDSYLQA---ELEASFVYEDTPDQSKATADVKTDMQSPKP 570
>gi|256751659|ref|ZP_05492534.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
gi|256749468|gb|EEU62497.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
Length = 765
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 53/182 (29%), Gaps = 25/182 (13%)
Query: 2 TFQQKRDAMRQ---------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
T ++KR + G ++V+ +G+G I++ +V G+ ++ I +
Sbjct: 480 TKRRKRTVKIKNADKIKSFTELEIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAG 539
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + + + + K
Sbjct: 540 GD-TLFVPVEQLDLVQKYVGPTDN------------PPKLNKLGGSEWLRAKRKAKKAVE 586
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++++ + ++S ++ + + + I I+ ++
Sbjct: 587 DLAKDLIQLYAKRQMVKGHAFSPDTPWQ---KEFEEQFPYEETEDQLRCIKEIKEDMEKD 643
Query: 173 SS 174
Sbjct: 644 RP 645
>gi|147669732|ref|YP_001214550.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
gi|146270680|gb|ABQ17672.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
Length = 1148
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 19/160 (11%), Positives = 54/160 (33%), Gaps = 16/160 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
+ GE +V+ HGV + + GM E+ ++ + L VP + + S
Sbjct: 485 KPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGD-KLYVPTDQMDRVNRFIGSG 543
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ + ++ Q K + E++ + + ++S
Sbjct: 544 ------------DEPPSLHRLGTQEWQRAKEKASESAEETARELLEIYAKRELASGYAFS 591
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + V + + +A+ ++ ++
Sbjct: 592 ADTVWQQEME---ASFSYVETPDQLKALYDVKEDMEKPRP 628
>gi|186685547|ref|YP_001868743.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
gi|186467999|gb|ACC83800.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
Length = 1170
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 18/172 (10%), Positives = 54/172 (31%), Gaps = 17/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ R G+++V+ HGVG +++ + ++ V+ + L+V
Sbjct: 489 KATSKQVDPNKLRPGDYVVHRNHGVGKFVKLESLTINDETRDYLVVQYA--DGLLRVAAD 546
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + + KA M + + K+ ++++
Sbjct: 547 QVGALSR------------FRAGGDKAPELNRMTGKAWENTKNKVRKAIKKLAVDLLKLY 594
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Q S+ ++ + + + +A+ ++ ++ S
Sbjct: 595 AARSQQQGFSFPSDMPWQ---EELEDSFPYQPTTDQLKAVQDVKRDMESDRP 643
>gi|153820314|ref|ZP_01972981.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457]
gi|126509143|gb|EAZ71737.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457]
Length = 691
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 17 ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 75
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 76 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 119
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 120 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 162
>gi|294141531|ref|YP_003557509.1| transcription-repair coupling factor [Shewanella violacea DSS12]
gi|293328000|dbj|BAJ02731.1| transcription-repair coupling factor [Shewanella violacea DSS12]
Length = 1157
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 27/183 (14%)
Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
++ +++RD +Q + G+ IV+ HGV ++ + G+ E+ +
Sbjct: 461 ISQKRRRDKQKQISSDALVKNLAELKVGQPIVHLDHGVAKYQGLETLDTGGLIAEYLKLE 520
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
+ L VPV I + ++ W++ ++ KI
Sbjct: 521 YAGGD-KLYVPVSALHLISRYSVGPDEEA--------NLNKLGNETWAKAKKKAVEKIR- 570
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+A + D++ S ++ E + ++ + +IN + ++
Sbjct: 571 ----DVAAELLDVYARRQSRPGSAC--KIDEQEYAQFANSFPFEETVDQETSINAVLTDM 624
Query: 170 SSK 172
S
Sbjct: 625 CSP 627
>gi|89054813|ref|YP_510264.1| transcription-repair coupling factor [Jannaschia sp. CCS1]
gi|88864362|gb|ABD55239.1| transcription-repair coupling factor [Jannaschia sp. CCS1]
Length = 1153
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 19/166 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
Q G+ IV+ HGVG ++ AG E + + L +PV +
Sbjct: 479 TEAQSLSPGDLIVHVDHGVGRYKGLETVTAAGAPHECIALEYAGGD-RLFLPVENIELLS 537
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G A Q A++ + +++R + +
Sbjct: 538 RY-----GHDDGLLDKLGGGA----------WQAKKARLKERIRLIADKLIRIAAERELR 582
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI + +++
Sbjct: 583 KAPIFEPPGDMWEA---FNARFPYEETDDQLTAIADVLDDMTLGRP 625
>gi|319902708|ref|YP_004162436.1| transcription-repair coupling factor [Bacteroides helcogenes P
36-108]
gi|319417739|gb|ADV44850.1| transcription-repair coupling factor [Bacteroides helcogenes P
36-108]
Length = 1129
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + G + + +++ + V + +
Sbjct: 436 ELNQFTPGDYVVHTDHGVGRFAGLVRI-PNGNTTQEVIKLVFQNEDVVFVSIHSLHKVSK 494
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 495 YKGKE------------GEAPRLNKLGTGAWEKLKDRTKSKIKDIARDLIKLYSQRREEK 542
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + ++ + +A ++ ++ S
Sbjct: 543 GFQYSPDSFLQR---ELEASFIYEDTPDQSKATADVKADMESTRP 584
>gi|83858282|ref|ZP_00951804.1| transcription-repair coupling factor [Oceanicaulis alexandrii
HTCC2633]
gi|83853105|gb|EAP90957.1| transcription-repair coupling factor [Oceanicaulis alexandrii
HTCC2633]
Length = 1162
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 21/177 (11%), Positives = 51/177 (28%), Gaps = 21/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K+ A G+ +V+ HG+G +K V + + + K L
Sbjct: 474 PRRRKKSADVIAEAGALTPGDLVVHADHGLGRYLGLKTLSVGEAPHDCLELEYAG-KSKL 532
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + L + A Q AK +
Sbjct: 533 YLPVENIELLSRY---GQDSETAQLDRLGAGA----------WQARKAKAKQRLRDMADQ 579
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ +++ + + + V + + AI+ + + +
Sbjct: 580 LIKIAAARNARDAEIITPPSGL---YDEFAARFPYVETDDQLNAIDDVFSDFAKGRP 633
>gi|238920223|ref|YP_002933738.1| transcription-repair coupling factor [Edwardsiella ictaluri 93-146]
gi|238869792|gb|ACR69503.1| transcription-repair coupling factor, putative [Edwardsiella
ictaluri 93-146]
Length = 1153
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R G+ +V+ HGVG + E G+K E+ ++++
Sbjct: 461 SRRRQDSRRTINTDTLIRNLAELTPGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYA 520
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV + L + G A K
Sbjct: 521 G-DAKLYVPVSSLHLLSRYAGGADDSAP--LHRLGGDA----------WSRARQKAAEKV 567
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ ++ ++ + A + + + AIN + ++
Sbjct: 568 RDVAAELLDIYAMRAAKAGFAFRHDR---EAYQLFCQGFPFETTADQAMAINAVLSDMCQ 624
Query: 172 KSS 174
+
Sbjct: 625 PLA 627
>gi|73541054|ref|YP_295574.1| transcription-repair coupling factor [Ralstonia eutropha JMP134]
gi|72118467|gb|AAZ60730.1| Transcription-repair coupling factor [Ralstonia eutropha JMP134]
Length = 1150
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 47/181 (25%), Gaps = 27/181 (14%)
Query: 4 QQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K++ + G+ +V+ HG+G + ++ EF +
Sbjct: 466 RRKQEQATAVDSMVRDLAELKIGDPVVHSDHGIGRYHGLVSLDMGQGDEEFLHLE-YDKG 524
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I ++ L + K
Sbjct: 525 SKLYVPVHQLHVISRYSGADPDTAP--LHHLGSGQ--------------WDKAKRRAAQQ 568
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
I + +L ++ + + AI + +++S
Sbjct: 569 IRDTAAELLNLYARRAAREGFAFPLSPKDYETFAESFGFEETPDQAAAIAAVIADMTSGK 628
Query: 174 S 174
Sbjct: 629 P 629
>gi|239625522|ref|ZP_04668553.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
gi|239519752|gb|EEQ59618.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
Length = 171
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 7/162 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKL--EFFVIAFDKDKMCLKVPVGKAIDIGMR 70
F G++I+Y GV I +IK + G ++ + + C V + +R
Sbjct: 1 MFEKGQYIIYGIRGVCEIMDIKTIDRPGGPKGKLYYELRPYYHQDCKIVTPVDSDKTVIR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
L + ++ ++ T +R + Y + + D +++ L+
Sbjct: 61 PLLTRDEALCLIDRIQDVKEMEVTEDKQREERYKEALKTCDCHVWVSMIKALYLRRQDRT 120
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ + + + +++A + E+A + + ++ I+
Sbjct: 121 RQGKKMTDLDERYFKTAEENLYSELALSLEMPREKVVDYIKS 162
>gi|270308451|ref|YP_003330509.1| transcription-repair coupling factor (superfamily II helicase)
[Dehalococcoides sp. VS]
gi|270154343|gb|ACZ62181.1| transcription-repair coupling factor (superfamily II helicase)
[Dehalococcoides sp. VS]
Length = 1154
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/160 (12%), Positives = 53/160 (33%), Gaps = 16/160 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
+ GE +V+ HGV + + GM E+ ++ + L VP + + S
Sbjct: 491 KPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGD-KLYVPTDQMDRVNRFIGSG 549
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ + ++ Q K + E++ + + ++S
Sbjct: 550 ------------DEPPSLHRLGTQEWQRAKEKASESAEETARELLDIYAKRELANGYAFS 597
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + V + + +A+ I+ ++
Sbjct: 598 ADTVWQQEME---ASFPYVETPDQLKALCDIKEDMEKTRP 634
>gi|172087806|ref|YP_206418.2| transcription-repair coupling factor [Vibrio fischeri ES114]
gi|197337336|ref|YP_002158058.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
gi|171902389|gb|AAW87530.2| transcription-repair coupling factor [Vibrio fischeri ES114]
gi|197314588|gb|ACH64037.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
Length = 1151
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ +V M E+ + +D+ L VPV I
Sbjct: 480 ELKIGQPVVHLDHGIGRYMGLQTLDVGDMPAEYM-MLEYQDQAKLYVPVSSLNLISRYSA 538
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + G+A + K AE++ + +P +
Sbjct: 539 GADETAP--IHKLGGEA----------WTKARRKAAEKVRDVAAELLDVYAKRAIKPGFA 586
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A + + AIN + ++ +
Sbjct: 587 FKQDR---EAYADFKASFPFEETHDQDIAINAVLSDMCQAKA 625
>gi|307265094|ref|ZP_07546654.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919892|gb|EFN50106.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 1169
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 16/168 (9%), Positives = 48/168 (28%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G ++V+ +G+G I++ +V G+ ++ I + L VPV +
Sbjct: 494 KIKSFTELEVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGGD-TLFVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + + K ++++ +
Sbjct: 553 VQKYVGPTDN------------PPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQ 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S ++ + + + I I+ ++
Sbjct: 601 MVKGHAFSPDTPWQ---KEFEEQFPYEETEDQLRCIKEIKEDMEKDRP 645
>gi|294808313|ref|ZP_06767070.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD
CC 1b]
gi|294444475|gb|EFG13185.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD
CC 1b]
Length = 1161
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 468 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 526
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 527 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 574
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 575 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 616
>gi|161503691|ref|YP_001570803.1| transcription-repair coupling factor [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865038|gb|ABX21661.1| hypothetical protein SARI_01775 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 1148
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 476 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EHYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter
ethanolicus JW 200]
gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter
ethanolicus JW 200]
Length = 1169
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 16/168 (9%), Positives = 48/168 (28%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G ++V+ +G+G I++ +V G+ ++ I + L VPV +
Sbjct: 494 KIKSFTELEVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGGD-TLFVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + + K ++++ +
Sbjct: 553 VQKYVGPTDN------------PPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQ 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S ++ + + + I I+ ++
Sbjct: 601 MVKGHAFSPDTPWQ---KEFEEQFPYEETEDQLRCIKEIKEDMEKDRP 645
>gi|86749967|ref|YP_486463.1| transcription-repair coupling factor [Rhodopseudomonas palustris
HaA2]
gi|86572995|gb|ABD07552.1| transcription-repair coupling factor [Rhodopseudomonas palustris
HaA2]
Length = 1171
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ +G+ +V+ HG+G ++ EV G + V + L +PV +
Sbjct: 495 SEVTSLSSGDIVVHVEHGIGRFIGLQTLEVGGAPHDC-VELHYANDTKLFLPVENIELLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R+ W R + + I ++ +L + ++
Sbjct: 554 RYGSDGTSV---------ELDRLGGGGWQARKAKLKNR--------IRQIAGELIKVAAE 596
Query: 129 PEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + E + + + AIN +L
Sbjct: 597 RHLREAPKLHVEPHLYDEFCARFPYEETEDQLAAINAALGDLERGMP 643
>gi|254497711|ref|ZP_05110485.1| transcription repair coupling factor [Legionella drancourtii
LLAP12]
gi|254353058|gb|EET11819.1| transcription repair coupling factor [Legionella drancourtii
LLAP12]
Length = 1149
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G +V+ GVG ++ E G EF V+A+ + + VPV I
Sbjct: 476 DMAELRLGAPVVHLQFGVGRYQGLQHIESNGAASEFLVLAYAGED-KIYVPVTSLHLISR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ ++ W R ++ K + +A + DL+
Sbjct: 535 YTGMDSEHAP--------LHKLGSDQWQREKKKAAEK-----IHDVAIELLDLYAKREAQ 581
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E S + ++ + ++IN I ++ S
Sbjct: 582 PGHQYELN--HSEYIKFASAFPFTETVDQLQSINQIITDMQSSRP 624
>gi|306828591|ref|ZP_07461785.1| transcription-repair coupling factor [Streptococcus mitis ATCC
6249]
gi|304429199|gb|EFM32285.1| transcription-repair coupling factor [Streptococcus mitis ATCC
6249]
Length = 1167
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIQLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + + + +I I+ ++
Sbjct: 595 FSADDDEQHA---FDDAFPYIETDDQLRSIEEIKRDMQDSHP 633
>gi|114330160|ref|YP_746382.1| transcription-repair coupling factor [Nitrosomonas eutropha C91]
gi|114307174|gb|ABI58417.1| transcription-repair coupling factor [Nitrosomonas eutropha C91]
Length = 1154
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 49/169 (28%), Gaps = 20/169 (11%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ G +V+ HG+G + + EF + L VPV +
Sbjct: 476 DLSEIKPGNPVVHEQHGIGRYLGLVSMDAGENNSDQSDEFL-ALEYQGGDKLYVPVTQLH 534
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I + + S + ++ K AE++ +
Sbjct: 535 LISRYSGAAPE------------EAPLHKLGSGQWEKAKRKAMQQVRDTAAELLNLYAQR 582
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ +L + N + + AI+ + ++ S
Sbjct: 583 AARKGHTF---RLNQHDYNVFADGFGFEETPDQAAAIHAVIQDMVSGKP 628
>gi|329113371|ref|ZP_08242152.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
gi|326697196|gb|EGE48856.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
Length = 1142
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ +G+G ++ V + + L +PV +
Sbjct: 462 AEASELSAGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRL-LYDGGQKLYLPVENIELLS 520
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ AL + G A Q +++ E++R
Sbjct: 521 R---FGSDQAGVALDKLGGTA----------WQNRKSQMKKRIRDMAGELIRTAAMRA-- 565
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
K E E + V + + AI + ++SS
Sbjct: 566 -LKEAPELVPPEGQWDEFCARFPFVETDDQARAIADVLEDMSSGRP 610
>gi|258542202|ref|YP_003187635.1| DNA helicase transcription-repair coupling factor [Acetobacter
pasteurianus IFO 3283-01]
gi|256633280|dbj|BAH99255.1| DNA helicase transcription-repair coupling factor [Acetobacter
pasteurianus IFO 3283-01]
gi|256636339|dbj|BAI02308.1| DNA helicase transcription-repair coupling factor [Acetobacter
pasteurianus IFO 3283-03]
gi|256639392|dbj|BAI05354.1| DNA helicase transcription-repair coupling factor [Acetobacter
pasteurianus IFO 3283-07]
gi|256642448|dbj|BAI08403.1| DNA helicase transcription-repair coupling factor [Acetobacter
pasteurianus IFO 3283-22]
gi|256645503|dbj|BAI11451.1| DNA helicase transcription-repair coupling factor [Acetobacter
pasteurianus IFO 3283-26]
gi|256648556|dbj|BAI14497.1| DNA helicase transcription-repair coupling factor [Acetobacter
pasteurianus IFO 3283-32]
gi|256651609|dbj|BAI17543.1| DNA helicase transcription-repair coupling factor [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654600|dbj|BAI20527.1| DNA helicase transcription-repair coupling factor [Acetobacter
pasteurianus IFO 3283-12]
Length = 1158
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ +G+G ++ V + + L +PV +
Sbjct: 478 AEASELSAGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRL-LYDGGQKLYLPVENIELLS 536
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ AL + G A Q +++ E++R
Sbjct: 537 R---FGSDQAGVALDKLGGTA----------WQNRKSQMKKRIRDMAGELIRTAAMRA-- 581
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
K E E + V + + AI + ++SS
Sbjct: 582 -LKEAPELVPPEGQWDEFCARFPFVETDDQARAIADVLEDMSSGRP 626
>gi|203287808|ref|YP_002222823.1| transcription factor, putative [Borrelia recurrentis A1]
gi|201085028|gb|ACH94602.1| transcription factor, putative [Borrelia recurrentis A1]
Length = 164
Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 20 IVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVE 79
+VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R L VE
Sbjct: 9 VVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVARAADLGIRALVSKEKVE 68
Query: 80 RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139
+++ + D+++ A++ + L+ Q E + E+++
Sbjct: 69 EVFDIIKDFEGQIDQ--KKIKDGSHDFYKQSDILSTAKLYKFLYVKSMQKELPFYEKRIL 126
Query: 140 ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ EI+ IS EA I LS +
Sbjct: 127 NDFELILQHEISLALQISFEEAKEKIREVLSGGQA 161
>gi|325473854|gb|EGC77042.1| hypothetical protein HMPREF9353_01390 [Treponema denticola F0402]
Length = 721
Score = 91.0 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 15/162 (9%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ +G+G I+ ++ + + ++ + + +P+ +A +
Sbjct: 491 ELNPGDYVVHVNYGIGKFRGIERVKILDTERD-YINLLYANDETVFIPIEQADLVQRYIG 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E G+A + S+ + K+ A+++ + + +
Sbjct: 550 NE------------GEAPHLDILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +++A + + I ++ ++
Sbjct: 598 FQKDDEWQTA---FEAAFPYEETDDQLTCIAEVKEDMEKPVP 636
>gi|302876047|ref|YP_003844680.1| transcription factor CarD [Clostridium cellulovorans 743B]
gi|307686765|ref|ZP_07629211.1| transcription factor CarD [Clostridium cellulovorans 743B]
gi|302578904|gb|ADL52916.1| transcription factor CarD [Clostridium cellulovorans 743B]
Length = 174
Score = 91.0 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 19/172 (11%), Positives = 61/172 (35%), Gaps = 7/172 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKE--QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
F+ ++I+Y +GV + +I + K +++ + + + MR
Sbjct: 1 MFKINDYIIYGGNGVCRVLDIGIPAINIGDSKRKYYTLQQVYKNGSVIYTPVDNDRVVMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT----- 125
KL + + + + + Y +N D + ++++ +
Sbjct: 61 KLISKEEAKELTRNLDSIEILLIDDDKMLEERYKEVMNKYDCTEMIKIIKTSYSRTKERL 120
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
+ + + + + + A + E+A + ++ + + I+ + + E
Sbjct: 121 EQGKKNTMIDDKYLKIAEENLFGELAITLNRTKEQIKDFIDQQVRKPYNLEE 172
>gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
Length = 1138
Score = 91.0 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+++V+ HG+ +I Q+V G ++F++ + L VP + +
Sbjct: 480 FKPGDYVVHATHGIALFKQIVRQDVGGKPRDYFLLIYAN-DDKLYVPFEQVDRLTRYIGP 538
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+A A R RA AK + DL+ DL+
Sbjct: 539 DASHPR---LTRLNCADWSRACSRARA---SAKKLAFDLV-------DLYTRRQTVHGYG 585
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A M + + A+ I+ ++
Sbjct: 586 F--SYDNQAQRDMEASFPYTLTSDQERALADIKADMEQAKP 624
>gi|149186684|ref|ZP_01864995.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
gi|148829592|gb|EDL48032.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
Length = 1163
Score = 91.0 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A Q G+ IV+ HG+G ++ V K + V K L +PV +
Sbjct: 479 AELQTLSVGDLIVHTEHGIGKYLGLEPVSVGKSKHDC-VQLEYKGGDKLFIPVENIDVLS 537
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
SE + L + G+A K + I E+ +L + +Q
Sbjct: 538 RYGSSEEAVM---LDRLGGEA--------------WQKRRARLKERIREIAGELMQVAAQ 580
Query: 129 PEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + N+ + + + AI + +L S
Sbjct: 581 RALKKAPVLEVDEPTYNQFLDRFQYEETDDQDRAIADVLSDLESGKP 627
>gi|150396613|ref|YP_001327080.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419]
gi|150028128|gb|ABR60245.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419]
Length = 1171
Score = 91.0 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G G ++V+ HG+G ++ E AG + + + L +PV +
Sbjct: 498 AEVTGLDEGSYVVHAEHGIGRFVGLQTIEAAGAPHDCLELVYAD-DAKLFLPVENIELLS 556
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L ++R ++
Sbjct: 557 RY---GSEGTDAVLDKLGGVA----------WQARKAKLKKRLLDMAGGLIRIAAERHTR 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + +I+ + +L S
Sbjct: 604 HAPVLAAQ---DGVYDEFAARFPYDETEDQLNSIDAVRDDLGSGRP 646
>gi|332865867|ref|ZP_08436651.1| putative transcription-repair coupling factor [Acinetobacter
baumannii 6013113]
gi|332735079|gb|EGJ66164.1| putative transcription-repair coupling factor [Acinetobacter
baumannii 6013113]
Length = 869
Score = 91.0 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|33152114|ref|NP_873467.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP]
gi|33148336|gb|AAP95856.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP]
Length = 1160
Score = 91.0 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + L VPV I
Sbjct: 489 ELKIGQAVVHLENGVGRYAGLTVLDTGGIKAEYLVLNYAN-DAKLYVPVAALHLISRYIG 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + E AK + I ++ +L ++ E
Sbjct: 548 GADE--QAPLHKLGS--------------ETWAKNRQKAVEKIHDIAAELLDIYAKRETQ 591
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Y+ A + + + AI+ + ++ +
Sbjct: 592 KGFKFAYDRDAFMQFSHSFPFEETEDQKLAIHAVISDMCQAKA 634
>gi|297538863|ref|YP_003674632.1| transcription-repair coupling factor [Methylotenera sp. 301]
gi|297258210|gb|ADI30055.1| transcription-repair coupling factor [Methylotenera sp. 301]
Length = 1142
Score = 91.0 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 38/166 (22%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R + +V+ HGVG + + ++ L VPV + I
Sbjct: 473 DLSELRMDDPVVHEQHGVGRYKGLVNIDFG-EGETELLLLEYFGDDKLYVPVSQLFLISR 531
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
L + K L I + +L +Q
Sbjct: 532 YSGGPPESAP--LHRLGSG--------------NWEKAKKKALKQIRDTAAELLNLYAQR 575
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + EAI + ++ S
Sbjct: 576 ASRRGHAFTLSLHDYETFCEGFPFEETPDQLEAIENVIKDMQSGRP 621
>gi|222152208|ref|YP_002561383.1| transcription-repair coupling factor [Streptococcus uberis 0140J]
gi|222113019|emb|CAR40328.1| putative transcription-repair coupling factor [Streptococcus uberis
0140J]
Length = 1166
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ ++ G+ + +V ++ + +PV + +
Sbjct: 487 ELVKGDYVVHNVHGIGKFLGIETIQIHGIHRD-YVTIQYQNSDTISLPVEQIESLSKYVS 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K+ ++++ Q S
Sbjct: 546 A------------DGKEPKINKLNDGRFQKTKQKVAKQVEDIADDLLKLYAERSQQKGFS 593
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + V + + +I I+ ++ S
Sbjct: 594 FSADDDLQKS---FDDDFPYVETEDQIRSIIEIKQDMESNHP 632
>gi|329297178|ref|ZP_08254514.1| transcription-repair coupling factor [Plautia stali symbiont]
Length = 1147
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 51/183 (27%), Gaps = 27/183 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D R G+ +V+ HGVG + E G+ E+ +
Sbjct: 455 SRRRQDNRRTINPDILIRNLAELHPGQPVVHLEHGVGRYIGLTTLEAGGIVAEYL-MLSY 513
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
D L VPV I + S K
Sbjct: 514 ADDAKLYVPVSSLHLISRYAGGADENAP------------LHKLGSDAWSRARQKAAEKV 561
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + ++ ++ + + + +AIN + ++
Sbjct: 562 RDVAAELLGIYAQRAAKAGFAFKHDR---EQYQLFCEGFPFETTPDQAQAINAVLSDMCQ 618
Query: 172 KSS 174
+
Sbjct: 619 PLA 621
>gi|294668965|ref|ZP_06734052.1| transcription-repair coupling factor [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309138|gb|EFE50381.1| transcription-repair coupling factor [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 1072
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G + ++ G E ++ + + L VPV + I
Sbjct: 399 DLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EAQLYVPVSQLHLISR 457
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S AL + A K + A + +L+ +
Sbjct: 458 Y--SGHAHENVALHKLGSGAWNKAKR-----------KAAEKARDTAAELLNLYAQRAAQ 504
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI+ + +L+
Sbjct: 505 SGHKFEINELD--YQAFADGFGYEETEDQAAAISAVIKDLTQAKP 547
>gi|332638696|ref|ZP_08417559.1| transcription-repair coupling factor [Weissella cibaria KACC 11862]
Length = 1172
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HGVG ++ E G+K + ++ + + +PV + +
Sbjct: 495 ELKPGDYVVHINHGVGVYEGMQTIENRGVKQD-YITIAYQQDAKIFIPVTQLDLVQKYVG 553
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ KA + Q+ AK+ E+++ + + +
Sbjct: 554 AA------------EKAPKINKLGGTEWQKAKAKVAKKVEDIADELLQLYAERELKQGFA 601
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + + I+ ++
Sbjct: 602 FPQD---DDVIRDFEDAFPYPETPDQIRSTQEIKADMEKTRP 640
>gi|237797686|ref|ZP_04586147.1| transcription-repair coupling factor [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331020536|gb|EGI00593.1| transcription-repair coupling factor [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 1150
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 537 GSDDEMAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIEAVRADMLAPKP 624
>gi|308233919|ref|ZP_07664656.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
gi|328943400|ref|ZP_08240865.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
gi|327491369|gb|EGF23143.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
Length = 1198
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+++V+ HG+ +I +QEVAG K ++F++ + + L VP + I R +
Sbjct: 499 FKPGDYVVHATHGIALFQKIVQQEVAGKKRDYFLLTYAQ-DDKLYVPFEQVDKI-TRYIG 556
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
R +L A R R + DL ++ + P
Sbjct: 557 PDGSTPRLTRL--NSADWSRACTRARKSAQKMAFDLVDLYTRRSTIKGFSFSFDTP---- 610
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A M + + A++ I+ ++ S +
Sbjct: 611 --------AQEDMETSFPYTLTRDQARALDDIKADMQSATP 643
>gi|146311285|ref|YP_001176359.1| transcription-repair coupling factor [Enterobacter sp. 638]
gi|145318161|gb|ABP60308.1| transcription-repair coupling factor [Enterobacter sp. 638]
Length = 1148
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ IV+ HGVG + E G+K E+ + L VPV I
Sbjct: 476 ELHVGQPIVHLEHGVGRYAGMTTLETGGIKGEYL-MLTYSGDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G +W+R Q+ K+ +A + D++ +
Sbjct: 535 GAED--NAPLHRLGG------DVWARARQKAAEKVR-----DVAAELLDIYAQRAAKSGY 581
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 582 AF--KHDKEQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|163751452|ref|ZP_02158676.1| transcription-repair coupling factor [Shewanella benthica KT99]
gi|161328666|gb|EDP99815.1| transcription-repair coupling factor [Shewanella benthica KT99]
Length = 1161
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 61/183 (33%), Gaps = 27/183 (14%)
Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
++ +++RD +Q + G+ IV+ HGV ++ + G+ E+ +
Sbjct: 465 ISQKRRRDRQKQISSDALVKNLAELKVGQPIVHLDHGVAKYQGLETLDTGGLVAEYLKLE 524
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
+ L VPV I + ++ W++ ++ KI
Sbjct: 525 YAGGD-KLYVPVSSLHLISRYSVGPDEEA--------NLNKLGNETWAKAKKKAVEKIR- 574
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+A + D++ + + E + ++ + IN + ++
Sbjct: 575 ----DVAVELLDVYARRQARPGTAC--NIDEQEYAQFANSFPFEETVDQETTINAVLTDM 628
Query: 170 SSK 172
S
Sbjct: 629 CSP 631
>gi|170077902|ref|YP_001734540.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002]
gi|169885571|gb|ACA99284.1| Transcription-repair coupling factor (TRCF) [Synechococcus sp. PCC
7002]
Length = 1162
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 20/175 (11%), Positives = 59/175 (33%), Gaps = 24/175 (13%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + G++IV+ +HG+G +I+ E+ V+ + L++
Sbjct: 482 KRRRAASKTVDVNKLNPGDYIVHKSHGIGRFIKIETL----QSREYLVLKYA--DGILRI 535
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P + + +G+ + R ++ AK+ +++
Sbjct: 536 PADSLDTLSRYR-----------HTAKGRPELHRMGGKT-WEKTKAKVRKSVKKLAVDLL 583
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +Y ++ + + + +A+ I+ +L S
Sbjct: 584 KIYAQRAEMKGITYPSDAPWQQEME---DSFPYQATPDQLKAVQDIKRDLESDRP 635
>gi|332299515|ref|YP_004441436.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
DSM 20707]
gi|332176578|gb|AEE12268.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
DSM 20707]
Length = 1115
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G++IV+ HGVG + EV G E V ++K L V + +
Sbjct: 422 ELHAISPGDYIVHSDHGVGQFDGLLTTEVDGKPRE-VVKLVYQNKDVLLVSIHSLHKLSK 480
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ E + + + + + +++ QP
Sbjct: 481 YQAQE------------EGEPQLSKLGTGAWTKLKERAKTKIKSIARDLIALYAARKEQP 528
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + A + + +AI I+ ++ S
Sbjct: 529 GFAFSPDSYLQHEME---ASFAYEETPDQLKAIEQIKADMESNRP 570
>gi|270293887|ref|ZP_06200089.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275354|gb|EFA21214.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 1129
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + E I +++ + V + +
Sbjct: 436 ELNQFTPGDYVVHTDHGVGRFAGLVRIPNGDTTQEVMKI-VYQNEDVVFVSIHSLHKVSK 494
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 495 YKGKE------------GEAPRLNKLGTGAWEKLKDRTKTKIKDIARDLIKLYSQRREEK 542
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + ++ + +A + ++ ++ S
Sbjct: 543 GFQYSSDSFLQR---ELEASFIYEDTPDQSKATSDVKADMESARP 584
>gi|42526796|ref|NP_971894.1| transcription-repair coupling factor [Treponema denticola ATCC
35405]
gi|41817111|gb|AAS11805.1| transcription-repair coupling factor [Treponema denticola ATCC
35405]
Length = 1155
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 15/162 (9%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ +G+G I+ ++ + + ++ + + +P+ +A +
Sbjct: 491 ELNPGDYVVHVNYGIGKFRGIERVKILDTERD-YINLLYANDETVFIPIEQADLVQRYIG 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E G+A + S+ + K+ A+++ + + +
Sbjct: 550 NE------------GEAPHLDILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +++A + + I ++ ++
Sbjct: 598 FQKDDEWQTA---FEAAFPYEETDDQLTCIAEVKEDMEKPVP 636
>gi|113461304|ref|YP_719373.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
gi|112823347|gb|ABI25436.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
Length = 1143
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + E G+K EF ++ + L VPV I
Sbjct: 476 ELKIGQPVVHLEHGVGRYGGLVSLENGGIKAEFLLLEYAN-NSKLYVPVTSLHLISRYVG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + AK + I +V +L +Q E
Sbjct: 535 GSDE----------------NAPLHKLGNDSWAKARHKAIEKIRDVAAELLDVYAQREVK 578
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + AIN + ++ + +
Sbjct: 579 KGFAFQYDKEEFKQFAATFPFEETPDQKMAINAVISDMCQEKA 621
>gi|194433692|ref|ZP_03065968.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
gi|194418121|gb|EDX34214.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
Length = 1148
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + + + +AIN + ++
Sbjct: 583 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDM 616
>gi|33597889|ref|NP_885532.1| transcription-repair coupling factor [Bordetella parapertussis
12822]
gi|33574318|emb|CAE38652.1| transcription-repair coupling factor [Bordetella parapertussis]
Length = 1151
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/185 (14%), Positives = 54/185 (29%), Gaps = 29/185 (15%)
Query: 2 TFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50
T + KR R R G+ +V+ HG+G + ++ ++EF + +
Sbjct: 463 TRRGKRTQERTSNVEAMVRDLAELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEY 522
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
L VPV + I ++ L + K
Sbjct: 523 A-SGSTLYVPVSQLHVIARYSGADPDAAP--LHQLGSGQ--------------WDKARRK 565
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + +L +Q +L S + + AI + +++
Sbjct: 566 AARQVRDTAAELLALYAQRAAREGYAFKLPMSDYEAFAEGFGFEETPDQAAAIQAVIMDM 625
Query: 170 SSKSS 174
+S
Sbjct: 626 TSGRP 630
>gi|298483734|ref|ZP_07001908.1| transcription-repair coupling factor [Bacteroides sp. D22]
gi|298270151|gb|EFI11738.1| transcription-repair coupling factor [Bacteroides sp. D22]
Length = 1141
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 448 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 506
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 507 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 554
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 555 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 596
>gi|254563490|ref|YP_003070585.1| transcription repair coupling protein, ATP-dependent helicase
[Methylobacterium extorquens DM4]
gi|254270768|emb|CAX26773.1| transcription repair coupling protein, ATP-dependent helicase
[Methylobacterium extorquens DM4]
Length = 1196
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%)
Query: 3 FQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
++ +D Q + G+ +V+ HG+G +K AG + + + L +P
Sbjct: 511 SKRPQDIILEVQALQPGDLVVHADHGIGRFVTLKTVTAAGAPHDCLELQYAG--GLLLLP 568
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V + + E AL + G A Q AK+ L ++++
Sbjct: 569 VENIELLTRY---GSEDSEVALDRLGGGA----------WQARKAKMKRRILEMAGDLIK 615
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S + E A + + AI+ + +L++
Sbjct: 616 IAAARFVKSAPSL---KAPEGLYEEFAARFAFQETEDQANAIDAVLDDLNAGRP 666
>gi|240140979|ref|YP_002965459.1| transcription repair coupling protein, ATP-dependent helicase
[Methylobacterium extorquens AM1]
gi|240010956|gb|ACS42182.1| transcription repair coupling protein, ATP-dependent helicase
[Methylobacterium extorquens AM1]
Length = 1196
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%)
Query: 3 FQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
++ +D Q + G+ +V+ HG+G +K AG + + + L +P
Sbjct: 511 SKRPQDIILEVQALQPGDLVVHADHGIGRFVTLKTVTAAGAPHDCLELQYAG--GLLLLP 568
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V + + E AL + G A Q AK+ L ++++
Sbjct: 569 VENIELLTRY---GSEDSEVALDRLGGGA----------WQARKAKMKRRILEMAGDLIK 615
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S + E A + + AI+ + +L++
Sbjct: 616 IAAARFVKSAPSL---KAPEGLYEEFAARFAFQETEDQANAIDAVLDDLNAGRP 666
>gi|160946835|ref|ZP_02094038.1| hypothetical protein PEPMIC_00794 [Parvimonas micra ATCC 33270]
gi|158447219|gb|EDP24214.1| hypothetical protein PEPMIC_00794 [Parvimonas micra ATCC 33270]
Length = 159
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKAIDIGMRKLSE 74
GE I YP HG G I I+++++ F+VI + + + + RKL
Sbjct: 3 VGEKIFYPMHGAGLIKSIEDKDLGDYCERFYVIELPFEQNLHIFIKEDDIDKFEFRKLVN 62
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
++ + + W +R +E ++ S D+ IA V++ L + + + S
Sbjct: 63 EDTLDEVYNYLNNEEFPMPNNWVQRYKENTKRLKSSDIFNIAYVLKGLSIRNEKGKLSLK 122
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E + A +V E V+ S+ + +IE ++
Sbjct: 123 ELFMLNLAKRILVSEFVMVSGFSKNKINKIIEYSME 158
>gi|163853560|ref|YP_001641603.1| transcription-repair coupling factor [Methylobacterium extorquens
PA1]
gi|163665165|gb|ABY32532.1| transcription-repair coupling factor [Methylobacterium extorquens
PA1]
Length = 1196
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%)
Query: 3 FQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
++ +D Q + G+ +V+ HG+G +K AG + + + L +P
Sbjct: 511 SKRPQDIILEVQALQPGDLVVHADHGIGRFVTLKTVTAAGAPHDCLELQYAG--GLLLLP 568
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V + + E AL + G A Q AK+ L ++++
Sbjct: 569 VENIELLTRY---GSEDSEVALDRLGGGA----------WQARKAKMKRRILEMAGDLIK 615
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S + E A + + AI+ + +L++
Sbjct: 616 IAAARFVKSAPSL---KAPEGLYEEFAARFAFQETEDQANAIDAVLDDLNAGRP 666
>gi|221067482|ref|ZP_03543587.1| transcription-repair coupling factor [Comamonas testosteroni KF-1]
gi|220712505|gb|EED67873.1| transcription-repair coupling factor [Comamonas testosteroni KF-1]
Length = 1163
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 53/188 (28%), Gaps = 32/188 (17%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------FFV 47
+++++ + G+ IV+ HG+G + ++ + F+
Sbjct: 460 RRRRQEQVSDVEALIKDLSELKVGDPIVHADHGIGRYRGLINMDMGQKNPDGTPALQEFL 519
Query: 48 IAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKI 107
L VPV + I + L + G K
Sbjct: 520 HLEYAADAVLYVPVSQLHLISRYTGVSPD--DAPLHKLGGTQ--------------WEKA 563
Query: 108 NSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIE 166
+ + +L ++ + +A + V + + + AI+ +
Sbjct: 564 KRKAAEQVRDSAAELLNIYARRAARQGHAFRFPTADYEQFVADFGFEETADQRAAIHAVV 623
Query: 167 VNLSSKSS 174
++ S
Sbjct: 624 QDMISPQP 631
>gi|330967943|gb|EGH68203.1| transcription-repair coupling factor [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 1150
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 537 GSDDEMAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + + I + ++ +
Sbjct: 585 AFADPR---ADYATFSAGFPFEETPDQQTTIEAVRADMLAPRP 624
>gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
Length = 1295
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 17/175 (9%), Positives = 57/175 (32%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + R G+++V+ HG+G ++++ + E+ VI + L+V
Sbjct: 601 KRRRAASQQVDPNKLRPGDYVVHKNHGIGQFLKLEKLSINNETREYLVIKYA--DGLLRV 658
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + M + ++ ++ +++
Sbjct: 659 AADQLGVLSR------------FRHTGTGLPQLHKMSGKTWEKTKNRVRKSIKKVAVDLL 706
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Q + ++ + + + +AI ++ +L S
Sbjct: 707 KLYAQRAQQSGYCFPADSPWQ---QELEDSFPYQPTPDQLKAIQDVKRDLESDRP 758
>gi|298486416|ref|ZP_07004477.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298159044|gb|EFI00104.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 1152
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 480 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANMHLIARYT 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 539 GSDDESAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 586
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ +
Sbjct: 587 AFAD---PKADYATFSAGFPFEETPDQQTTIEAVRADMLAPKP 626
>gi|260550143|ref|ZP_05824357.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624]
gi|260406898|gb|EEX00377.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624]
Length = 1153
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|226227554|ref|YP_002761660.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
gi|226090745|dbj|BAH39190.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
Length = 1104
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
+ G+++V+ HG+G I++ V +E VI ++ L VP+ + I + +
Sbjct: 438 LKPGDYVVHLEHGIGIYRGIEKIFVRESTIESAVIEYEGGD-RLNVPLYRIDQIERYRSA 496
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + + + K L E++ R +
Sbjct: 497 HDVSDDAPAPRL-------HKLGGNKWKAQREKTRMAILEMTQELLELYARRKVTTRPPH 549
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ ++ + +A ++ +L +
Sbjct: 550 GADGAWQR---QLESSFLFEDTPDQRKATEDVKRDLEGERP 587
>gi|168206625|ref|ZP_02632630.1| transcriptional regulator, CarD family [Clostridium perfringens E
str. JGS1987]
gi|168214107|ref|ZP_02639732.1| transcriptional regulator, CarD family [Clostridium perfringens CPE
str. F4969]
gi|168217539|ref|ZP_02643164.1| transcriptional regulator, CarD family [Clostridium perfringens
NCTC 8239]
gi|169343103|ref|ZP_02864129.1| transcriptional regulator, CarD family [Clostridium perfringens C
str. JGS1495]
gi|182625226|ref|ZP_02953001.1| transcriptional regulator, CarD family [Clostridium perfringens D
str. JGS1721]
gi|169298741|gb|EDS80816.1| transcriptional regulator, CarD family [Clostridium perfringens C
str. JGS1495]
gi|170661969|gb|EDT14652.1| transcriptional regulator, CarD family [Clostridium perfringens E
str. JGS1987]
gi|170714450|gb|EDT26632.1| transcriptional regulator, CarD family [Clostridium perfringens CPE
str. F4969]
gi|177909538|gb|EDT71978.1| transcriptional regulator, CarD family [Clostridium perfringens D
str. JGS1721]
gi|182380373|gb|EDT77852.1| transcriptional regulator, CarD family [Clostridium perfringens
NCTC 8239]
Length = 168
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 66/168 (39%), Gaps = 9/168 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE-VAGMKLEFFVIAFDK---DKMCLKVPVGKAIDIG 68
F+ ++I+Y GV + +I ++ + ++ E++V++ K + I
Sbjct: 1 MFKINDYIMYGTVGVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTVIKIPVDNKKIS 60
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH----- 123
MR L V + + + +R E+ + SG+ + ++R ++
Sbjct: 61 MRTLLSKEDVNSIINSIPETETLWIDNDRQRNDEFKTMLRSGNCDDLIVLIRSIYLDKKK 120
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
R + + ++ ++A + E A + I E + I+ ++
Sbjct: 121 RKLDGKKACKGDDEIMQTAEKLINEEFAVILDIRPEEVKSYIKSHIPQ 168
>gi|119953150|ref|YP_945359.1| CarD-like transcriptional regulator [Borrelia turicatae 91E135]
gi|119861921|gb|AAX17689.1| CarD-like transcriptional regulator [Borrelia turicatae 91E135]
Length = 161
Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 20 IVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVE 79
+VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R L VE
Sbjct: 9 VVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVSRADDLGIRALVSKEKVE 68
Query: 80 RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139
+++ + D+++ A++ + L+ Q E + E+++
Sbjct: 69 EVFNIIKDFEEQIDQ--KKIKDGSHDFYKQSDILSTAKLYKFLYTKSMQKELPFYEKRIL 126
Query: 140 ESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ EI+ IS EA I+ LS
Sbjct: 127 NDFELILQHEISLALQISFEEAKQKIKEVLS 157
>gi|227822023|ref|YP_002825994.1| putative transcription-repair coupling factor [Sinorhizobium fredii
NGR234]
gi|227341023|gb|ACP25241.1| putative transcription-repair coupling factor [Sinorhizobium fredii
NGR234]
Length = 1170
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 21/177 (11%)
Query: 2 TFQQKR----DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KR A G G ++V+ HG+G ++ E AG + + L
Sbjct: 486 SKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCL-ELVYAEDAKL 544
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + + L + G A Q AK+ L
Sbjct: 545 FLPVENIELLSRY---GSEGTDAILDKLGGVA----------WQARKAKLKKRLLDMAGG 591
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R ++ + + + + + + +I + +L
Sbjct: 592 LIRIAAERHTRHAPALVAQ---DGVYDEFAARFPYEETEDQLNSIEAVRDDLGGGRP 645
>gi|224540214|ref|ZP_03680753.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518176|gb|EEF87281.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus
DSM 14838]
Length = 1131
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + + E + +++ + V + +
Sbjct: 437 ELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKL-VYQNEDVVFVSIHSLHKVSK 495
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K G+A + + ++ + + +++R + +
Sbjct: 496 YKG------------KDGEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIRLYSQRREEK 543
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + ++ + +A ++ ++ S
Sbjct: 544 GFQFSVDSFLQR---ELEASFIYEDTPDQSKATADVKADMESNRP 585
>gi|330869865|gb|EGH04574.1| transcription-repair coupling factor [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330986245|gb|EGH84348.1| transcription-repair coupling factor [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331013175|gb|EGH93231.1| transcription-repair coupling factor [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 1150
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 537 GSDDESAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIEAVRADMLAPKP 624
>gi|289648570|ref|ZP_06479913.1| transcription-repair coupling factor [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 1150
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 537 GSDDESAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIEAVRADMLAPKP 624
>gi|193077268|gb|ABO12050.2| transcription-repair coupling protein [Acinetobacter baumannii ATCC
17978]
Length = 1153
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|184157970|ref|YP_001846309.1| transcription-repair coupling factor [Acinetobacter baumannii
ACICU]
gi|332874430|ref|ZP_08442333.1| transcription-repair coupling factor [Acinetobacter baumannii
6014059]
gi|183209564|gb|ACC56962.1| Transcription-repair coupling factor (superfamily II helicase)
[Acinetobacter baumannii ACICU]
gi|322508289|gb|ADX03743.1| Transcription-repair coupling protein [Acinetobacter baumannii
1656-2]
gi|332737274|gb|EGJ68198.1| transcription-repair coupling factor [Acinetobacter baumannii
6014059]
Length = 1153
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|126641668|ref|YP_001084652.1| transcription-repair coupling protein [Acinetobacter baumannii ATCC
17978]
Length = 1054
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 381 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 439
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 440 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 483
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 484 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 527
>gi|332851753|ref|ZP_08433678.1| transcription-repair coupling factor [Acinetobacter baumannii
6013150]
gi|332729760|gb|EGJ61095.1| transcription-repair coupling factor [Acinetobacter baumannii
6013150]
Length = 1153
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|268608427|ref|ZP_06142154.1| transcription-repair coupling factor [Ruminococcus flavefaciens
FD-1]
Length = 1160
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ +V+ HG+G I++ E+ G+ ++ I + L +PV + +
Sbjct: 491 GDLVVHSGHGIGRFIGIRKLELEGVTKDYITIQYAGTD-KLYIPVTQLDMVSKYIGPRDD 549
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
+ KL + K + A+ ++ +L ++ EKS
Sbjct: 550 SGVKLNKLSSNE---------------WQKTRNNVKHAVKDMAHELIALYAKREKSVGFA 594
Query: 137 QLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + R V + + ++I+ I+ ++
Sbjct: 595 FYPDDEIQRDFEERFPYVETDDQLQSISEIKADMERARP 633
>gi|260555151|ref|ZP_05827372.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC
19606]
gi|260411693|gb|EEX04990.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC
19606]
Length = 1153
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|213157165|ref|YP_002319210.1| transcription-repair coupling factor [Acinetobacter baumannii
AB0057]
gi|213056325|gb|ACJ41227.1| transcription-repair coupling factor [Acinetobacter baumannii
AB0057]
Length = 1153
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|169796102|ref|YP_001713895.1| transcription-repair coupling protein [Acinetobacter baumannii AYE]
gi|215483557|ref|YP_002325776.1| transcription-repair coupling factor [Acinetobacter baumannii
AB307-0294]
gi|301345057|ref|ZP_07225798.1| transcription-repair coupling factor [Acinetobacter baumannii
AB056]
gi|301510356|ref|ZP_07235593.1| transcription-repair coupling factor [Acinetobacter baumannii
AB058]
gi|301595346|ref|ZP_07240354.1| transcription-repair coupling factor [Acinetobacter baumannii
AB059]
gi|169149029|emb|CAM86906.1| transcription-repair coupling protein [Acinetobacter baumannii AYE]
gi|213987269|gb|ACJ57568.1| transcription-repair coupling factor [Acinetobacter baumannii
AB307-0294]
Length = 1153
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|330878592|gb|EGH12741.1| transcription-repair coupling factor [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 1150
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 537 GSDDEMAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIEAVRADMLAPRP 624
>gi|288549507|ref|ZP_06390702.1| transcription-repair coupling factor [Enterobacter cancerogenus
ATCC 35316]
gi|288318220|gb|EFC57158.1| transcription-repair coupling factor [Enterobacter cancerogenus
ATCC 35316]
Length = 992
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ IV+ HGVG + E G+K E+ + + L VPV I
Sbjct: 320 ELHPGQPIVHLEHGVGRYQGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 378
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 379 GAED--NAPLHKLGGDA----------WARARQKAAEKVRDVAAELLDIYAQRAAKEGYA 426
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 427 FKHD---KEQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 465
>gi|213967358|ref|ZP_03395506.1| transcription-repair coupling factor [Pseudomonas syringae pv.
tomato T1]
gi|301381676|ref|ZP_07230094.1| transcription-repair coupling factor [Pseudomonas syringae pv.
tomato Max13]
gi|302058434|ref|ZP_07249975.1| transcription-repair coupling factor [Pseudomonas syringae pv.
tomato K40]
gi|302131161|ref|ZP_07257151.1| transcription-repair coupling factor [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213927659|gb|EEB61206.1| transcription-repair coupling factor [Pseudomonas syringae pv.
tomato T1]
gi|331019538|gb|EGH99594.1| transcription-repair coupling factor [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 1150
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 537 GSDDEMAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIEAVRADMLAPRP 624
>gi|28869305|ref|NP_791924.1| transcription-repair coupling factor [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28852546|gb|AAO55619.1| transcription-repair coupling factor [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 1150
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 537 GSDDEMAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIEAVRADMLAPRP 624
>gi|323517915|gb|ADX92296.1| transcription-repair coupling factor [Acinetobacter baumannii
TCDC-AB0715]
Length = 1153
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|317402005|gb|EFV82605.1| transcription-repair coupling factor [Achromobacter xylosoxidans
C54]
Length = 1160
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G+ +V+ HG+G + ++ ++EF + + L VPV + I
Sbjct: 491 DLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYAN-GSTLYVPVSQLHVIAR 549
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + K + + +L +Q
Sbjct: 550 YSGADPEAAP--LHQLGSGQ--------------WDKARRKAAKQVRDTAAELLALYAQR 593
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +++S
Sbjct: 594 AAREGFAFNLPLNDYQAFAEGFGFEETADQAAAIEAVIADMTSGRP 639
>gi|239502151|ref|ZP_04661461.1| transcription-repair coupling factor [Acinetobacter baumannii
AB900]
Length = 1153
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|239627382|ref|ZP_04670413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517528|gb|EEQ57394.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 167
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 5/161 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ GE I+Y GV + +I + + ++ + +K + + MR +
Sbjct: 1 MFKKGEFILYGTVGVCQVEKISRTDFSDNDRLYYYLVPRYEKDTTICIPVDSDKVMMRGI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE-- 130
ER +K + R Q Y I SGD + +A +++++ R + +
Sbjct: 61 MSRKDAERFVKAWPDVECKEYANDRERPQAYKEAIQSGDCLELASMIKEISRMEQSRKGK 120
Query: 131 ---KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
S E+ ++A + E+AA I + IE +
Sbjct: 121 GRILSVREKDGAKAARRLLFGELAAALDIYPEDVPEYIEGH 161
>gi|325479334|gb|EGC82430.1| transcription-repair coupling factor [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 1167
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 21/176 (11%)
Query: 4 QQKRDAMR-----QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+K+ + R G+++V+ +G+G +++ EV + +F VI + L
Sbjct: 485 SKKKTSSRDIINYSDLEIGDYVVHENNGIGLYKGLEKIEVNNTEKDFVVIEYRGTD-KLF 543
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VPV + + S RG++ ++ + Q+ A+ ++
Sbjct: 544 VPVDQMNLVSKYIGS------------RGESPKLSSLGTSTWQKAKARAKKAVDEIADDL 591
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
V+ + ++S+ ++ N + S+ +IN I+ ++ S
Sbjct: 592 VKLYAKRSKIKGHAFSKDTAWQ---NDFENSFPFEETYSQIRSINEIKSDMESDKP 644
>gi|313886626|ref|ZP_07820338.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923922|gb|EFR34719.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
PR426713P-I]
Length = 1115
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G++IV+ HGVG + EV G E V ++K L V + +
Sbjct: 422 ELHAISPGDYIVHSDHGVGQFDGLLTTEVDGKPRE-VVKLVYQNKDVLLVSIHSLHKLSK 480
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ E + + + + + +++ QP
Sbjct: 481 YQAQE------------EGEPQLSKLGTGAWTKLKERAKTKIKSIARDLIALYAARKEQP 528
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + A + + +AI I+ ++ S
Sbjct: 529 GFAFSPDSYLQHEME---ASFAYEETPDQLKAIEQIKADMESNRP 570
>gi|255065241|ref|ZP_05317096.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
gi|255050662|gb|EET46126.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
Length = 1158
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 FQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
++K A G+ +V+ HG+G + ++ G E ++ + +
Sbjct: 471 RRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EA 529
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VPV + I S AL + A K +
Sbjct: 530 QLYVPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDT 576
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 577 AAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIVAVIKDLTQAKP 633
>gi|257066460|ref|YP_003152716.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
20548]
gi|256798340|gb|ACV28995.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
20548]
Length = 1170
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 63/169 (37%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ G+++V+ +G+G +++ EV ++ +F VI + L VPV +
Sbjct: 493 RDIINYSDLDIGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRGTD-KLFVPVDQMN 551
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I S RG++ ++ ++ Q+ A+ ++V +
Sbjct: 552 LISKYIGS------------RGESPKLSSLGTQTWQKAKARAKKAVDEIADDLVELYAKR 599
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ ++ N + S+ +I I+ ++ S
Sbjct: 600 SKIKGHAFSKDTTWQ---NEFENSFPYEETYSQIRSIEEIKNDMESDKP 645
>gi|37526705|ref|NP_930049.1| transcription-repair coupling factor [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36786137|emb|CAE15189.1| transcription-repair coupling factor (TRCF) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 1148
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R + +V+ HGVG + E G+K E+ ++++ + L VPV I
Sbjct: 475 ELRPSQPVVHLEHGVGRYQGLTTLEAGGIKAEYLILSYAGND-KLYVPVSSLHLISRYAG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + +V +L +
Sbjct: 534 GADE--NAPLHKLGGEA--------------WNKARQKAAEKVRDVAAELLDIYAHRAVK 577
Query: 133 YSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++ + + + +AIN + ++
Sbjct: 578 PGFAFKHDWEQYQLFCQSFPFETTPDQEQAINAVLNDMCQP 618
>gi|3914013|sp|O52236|MFD_MYXXA RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|2736296|gb|AAB94134.1| transcription-repair coupling factor [Myxococcus xanthus]
Length = 1201
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ G+G + + EV G+ +F V+ + + +PVG MR +
Sbjct: 531 DLKEGDLIVHTDFGIGRYAGLTKMEVNGVPGDFLVLEYAGRD-KIYLPVG-----RMRLI 584
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + + +R +E K+ + L A + S
Sbjct: 585 QKFSGGDPTQVQLDKLGTTSWEKTKKRVKEQLLKMAAELLQIAAA-----RKAHPGHAFS 639
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + + + + +AI + ++
Sbjct: 640 APDRYFAQ-----FEADFEFEETPDQAKAIEDVLADMQKPEP 676
>gi|289450268|ref|YP_003474746.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184815|gb|ADC91240.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 1241
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G+ +V+ HG+G ++ EV G++ ++ +++ + L +P+ +
Sbjct: 556 SDLRPGDLVVHDIHGIGIYKGLRSVEVDGVRRDYIWLSYANNDE-LYLPMEALDQLQKYI 614
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + G K+ + ++ ++ DL + ++ K
Sbjct: 615 GVSEQQNPKL-SRLGGTD--------------WQKLKNKARDSVKKLAFDLVKLYAERRK 659
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
+ E+ R + + I + ++ S
Sbjct: 660 IKGYKFPPETTWEREFAESFPFEETDDQLRCIKEVSADMESDK 702
>gi|75908979|ref|YP_323275.1| transcription-repair coupling factor [Anabaena variabilis ATCC
29413]
gi|75702704|gb|ABA22380.1| transcription-repair coupling factor [Anabaena variabilis ATCC
29413]
Length = 1188
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 17/176 (9%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ A +Q R G+++V+ +HG+G +++ + ++ V+ + L+
Sbjct: 503 RKRRQAASKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTINDETRDYIVVQYA--DGLLR 560
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + K M + ++ ++
Sbjct: 561 VAADQVGALSR------------FRATGDKPPELHKMTGKAWDNTKNRVRKAIKKLAVDL 608
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ Q +Y + ++ + + + +A+ ++ ++ S
Sbjct: 609 LKLYAARSQQQGFAYPQDMPWQEEME---DSFPYQATTDQLKAVQDVKRDMESDRP 661
>gi|300934101|ref|ZP_07149357.1| transcription-repair coupling factor [Corynebacterium resistens DSM
45100]
Length = 1255
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/177 (11%), Positives = 55/177 (31%), Gaps = 16/177 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMCL 57
+++ G+ +V+ +HG+G ++E+ + + E+ V L
Sbjct: 545 PAKKRNRVDPLALEPGDLVVHDSHGIGKFVRMEERTIGKGADASRREYLV---------L 595
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+ K G + ++ + V G+ M + K E
Sbjct: 596 EYAPSKRGGPGDQLYVPMDQLDMLSRYVGGEKPALSKMGGADWKNTKRKARGAVRQIAGE 655
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+V+ + P ++ ++ + + + AI ++ ++
Sbjct: 656 LVQLYATRQAAPGYAFGADTPWQREME---EAFPYTETEDQFNAIEAVKADMEKPVP 709
>gi|197105082|ref|YP_002130459.1| transcription-repair coupling factor [Phenylobacterium zucineum
HLK1]
gi|196478502|gb|ACG78030.1| transcription-repair coupling factor [Phenylobacterium zucineum
HLK1]
Length = 1162
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 48/167 (28%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ HG+G +K +V G + + L +PV +
Sbjct: 488 AEASALTPGDLVVHIDHGIGRYDGLKTLDVQGAPHDTL-ELQYGGEAKLYLPVENIDLLT 546
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ R+ W R ++ E+ L R ++
Sbjct: 547 RYGADAENVQL---------DRLGGAAWQARKARAKERLR--------EMADGLIRIAAE 589
Query: 129 PEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AI + +L+
Sbjct: 590 RATKATDAVEPPQGVFDEFCARFPYEETEDQLMAIGDVLEDLAGGKP 636
>gi|168335026|ref|ZP_02693140.1| transcription-repair coupling factor [Epulopiscium sp. 'N.t.
morphotype B']
Length = 1175
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/177 (11%), Positives = 64/177 (36%), Gaps = 21/177 (11%)
Query: 1 MTFQQK----RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++ ++K + G+++V+ HG+G I++ G+ + I ++
Sbjct: 489 VSTKKKYKGAKIESFMELAEGDYVVHENHGIGIFIGIEKIVTEGVARDNLKINYEG--GT 546
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L V + + + SE G A + + ++ +K +
Sbjct: 547 LYVNINQMDLVQKYVGSE------------GAAPKLNMLGNPEWKKAKSKARNSVKNIAK 594
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E++ + ++ +Y + ++++ + + +AI ++ ++ S
Sbjct: 595 ELILLYSKRENSRGFAYEKDSIWQT---EFEESFPYEETSDQIDAIQAVKTDMESDK 648
>gi|77917709|ref|YP_355524.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
2380]
gi|77543792|gb|ABA87354.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
2380]
Length = 1161
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 18/171 (10%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+ R + R G+ +V+ HG+G ++ ++ G + +F + + L +PV +
Sbjct: 491 KARLSSLAELREGDLVVHADHGIGRYQGLQHLQLQGNEGDFLNLEYAGKD-RLYLPVERI 549
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I +E L + G A K A+ E+ R+L +
Sbjct: 550 EKIQKYVGAEGAMPR--LDRMGGGA--------------WEKAKLKARAAVEELARELLQ 593
Query: 125 TDSQPEKSYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ E A+ + + AIN + ++ + +
Sbjct: 594 IYARREMHEGFHYSPPDAMFREFEAAFPYEETADQMAAINDVLTDMQTPRA 644
>gi|329897463|ref|ZP_08272106.1| Transcription-repair coupling factor [gamma proteobacterium
IMCC3088]
gi|328921160|gb|EGG28563.1| Transcription-repair coupling factor [gamma proteobacterium
IMCC3088]
Length = 1150
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 16/161 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G +V+ HGVG ++ VAG EF + + L VPV I
Sbjct: 477 ELHEGTPVVHLEHGVGRYEGLQTLSVAGETNEF-ITLIYAEGAKLYVPVASLHLISRYAG 535
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ L + R + + +A + +++ +
Sbjct: 536 ADGDSAP--LHRLGSDQW-----EKARKKASERAS------DVAAQLLEVYARREARKGF 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E + R + + AI + ++ ++
Sbjct: 583 AHELDPLD--YERFCSGFPFEETPDQALAIEAVRNDMCAQK 621
>gi|224026146|ref|ZP_03644512.1| hypothetical protein BACCOPRO_02902 [Bacteroides coprophilus DSM
18228]
gi|224019382|gb|EEF77380.1| hypothetical protein BACCOPRO_02902 [Bacteroides coprophilus DSM
18228]
Length = 845
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + G + + ++ + V + I
Sbjct: 155 ELNMFEPGDYVVHIDHGIGKFAGLVRI-PNGNTTQEVIKLIYQNDDVVFVSIHSLHKISK 213
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + + ++++ + +
Sbjct: 214 YKGKE------------GEQPRISKLGTGAWEKIKERTKTKIKDIARDLIKLYSQRKQEK 261
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + + ++ + +A ++ ++ S
Sbjct: 262 GFKYSPDSFLQ---HELEASFLYEDTPDQLKATQDVKADMESDRP 303
>gi|198275717|ref|ZP_03208248.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135]
gi|198271346|gb|EDY95616.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135]
Length = 1122
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + G + + +++ + V + I
Sbjct: 430 ELNMFEPGDYVVHIDHGIGRFAGLVRI-PNGNTTQEVIKLVYQNEDVVFVSIHSLHKISK 488
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + + ++++ + +
Sbjct: 489 YKGKE------------GEQPRISKLGTGAWEKIKERTKTKIKDIARDLIKLYSQRKQEK 536
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + + ++ + +A ++ ++ S
Sbjct: 537 GFKYSPDSFLQ---HELEASFLYEDTPDQLKATQEVKADMESDKP 578
>gi|160888992|ref|ZP_02069995.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492]
gi|156861459|gb|EDO54890.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492]
Length = 1129
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + E I +++ + V + +
Sbjct: 436 ELNQFTPGDYVVHTDHGVGRFAGLVRIPNGDTTQEVMKI-VYQNEDVVFVSIHSLHKVSK 494
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 495 YKGKE------------GEAPRLNKLGTGAWEKLKDRTKTKIKDIARDLIKLYSQRREEK 542
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + ++ + +A + ++V++ S
Sbjct: 543 GFQYSPDSFLQR---ELEASFIYEDTPDQSKATSDVKVDMESARP 584
>gi|146293254|ref|YP_001183678.1| transcription-repair coupling factor [Shewanella putrefaciens
CN-32]
gi|145564944|gb|ABP75879.1| transcription-repair coupling factor [Shewanella putrefaciens
CN-32]
Length = 1162
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + + L VPV I +
Sbjct: 488 ELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSNLHLISRYSV 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ E AK + + I +V +L ++ +
Sbjct: 547 GADE----------------DAHLNKLGNETWAKAKNKAIEKIRDVAAELLDVYARRQAR 590
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E ++ E + + ++ + AI+ + ++ S
Sbjct: 591 PGESCEIDEEEYAQFAQGFPFEETVDQESAIHAVLADMRSP 631
>gi|332519222|ref|ZP_08395689.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
gi|332045070|gb|EGI81263.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
Length = 1120
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 57/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +K+ +V G K E + ++ L +
Sbjct: 426 AKKQAITLKELTNLDIGDYVTHIDHGIGKFGGLKKIDVEGKKQEAIKL-VYGERDILYLS 484
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S+ + K + +++
Sbjct: 485 IHSLHKITK------------FNGKDGKPPKVYKLGSKAWKTLKQKTKARVKHIAFNLIK 532
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Y+ + + + ++ + +A I+ ++ S+
Sbjct: 533 LYAKRKLEKGYQYNTDSYLQ---HELEASFIYEDTPDQIKATADIKADMESERP 583
>gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium sp.
'sapolanicus']
gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium sp.
'sapolanicus']
Length = 1164
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+++V+ HG+G +K E+ G ++ V+ + + L VP K + S
Sbjct: 500 GDYVVHENHGIGKYLGVKTLEIQGQHKDYLVLKYAGED-KLYVPTDKINLVQKYIGS--- 555
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
+ + S ++ K+ ++ ++ + E
Sbjct: 556 ---------DSGSPKLYKLGSSDWKKVKEKVEKSVKEMAIGLLELYAERETLKGYKFPED 606
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L++ + + +AI ++ ++ S+
Sbjct: 607 DLWQ---KEFEDAFPFHETPDQQKAIKEVKSDMESEQP 641
>gi|148557853|ref|YP_001257567.1| transcription-repair coupling factor [Brucella ovis ATCC 25840]
gi|148369138|gb|ABQ62010.1| transcription-repair coupling factor [Brucella ovis ATCC 25840]
Length = 1132
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G +K AG + I + L +PV +
Sbjct: 460 SEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYAG-DDRLFLPVENIELLS 518
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + G A Q AK+ L +++ +
Sbjct: 519 RY---GSEGSDAVLDKLGGGA----------WQARKAKLKKRLLEIAGHLIQIAAERQMR 565
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + +L+
Sbjct: 566 GAPVMTPPDGL---YAEFAARFPDDETDDQLTAIEAVADDLAQGKP 608
>gi|228470004|ref|ZP_04054920.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3]
gi|228308385|gb|EEK17223.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3]
Length = 1114
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G++IV+ HGVG + EV G E V ++K L V + +
Sbjct: 422 ELHAISPGDYIVHSDHGVGQFDGLLTTEVDGKPRE-VVKLVYQNKDVLLVSIHSLHKLSK 480
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ E + + + + + + +++ QP
Sbjct: 481 YQAQE------------EGSPQLSKLGTGAWTKLKERAKTKIKSIARDLIALYAARKEQP 528
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + A + + +AI I+ ++ S
Sbjct: 529 GFAFSPDSYLQHEME---ASFAYEETPDQLKAIEQIKADMESNRP 570
>gi|260170991|ref|ZP_05757403.1| transcription-repair coupling factor [Bacteroides sp. D2]
gi|315919312|ref|ZP_07915552.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693187|gb|EFS30022.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 1120
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 538 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 579
>gi|237715944|ref|ZP_04546425.1| transcription-repair coupling factor [Bacteroides sp. D1]
gi|229443591|gb|EEO49382.1| transcription-repair coupling factor [Bacteroides sp. D1]
Length = 1131
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 438 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 496
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 497 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 544
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 545 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 586
>gi|264678103|ref|YP_003278010.1| transcription-repair coupling factor [Comamonas testosteroni CNB-2]
gi|262208616|gb|ACY32714.1| transcription-repair coupling factor [Comamonas testosteroni CNB-2]
Length = 1163
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 53/188 (28%), Gaps = 32/188 (17%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------FFV 47
+++++ + G+ IV+ HG+G + ++ + F+
Sbjct: 460 RRRRQEQVSDVEALIKDLSELKVGDPIVHADHGIGRYRGLINMDMGQKNTDGTPALQEFL 519
Query: 48 IAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKI 107
L VPV + I + L + G K
Sbjct: 520 HLEYAADAVLYVPVSQLHLISRYTGVSPD--DAPLHKLGGTQ--------------WEKA 563
Query: 108 NSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIE 166
+ + +L ++ + +A + V + + + AI+ +
Sbjct: 564 KRKAAEQVRDSAAELLNIYARRAARQGHAFRFPTADYEQFVADFGFEETADQRAAIHAVV 623
Query: 167 VNLSSKSS 174
++ S
Sbjct: 624 QDMISPQP 631
>gi|257457388|ref|ZP_05622559.1| transcription-repair coupling factor [Treponema vincentii ATCC
35580]
gi|257445310|gb|EEV20382.1| transcription-repair coupling factor [Treponema vincentii ATCC
35580]
Length = 1154
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 16/162 (9%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ +G+G I+ + G + + ++ + +P+ +A +
Sbjct: 490 ELNPGDYVVHVNYGIGQFKGIERVKTLGHERD-YINLLYAQDETVFIPIEQANLVQRYIG 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E G+A + S+ + K+ +++ R + +
Sbjct: 549 NE------------GEAPRLDIIGSKAWENRKNKVKKSVEDIADKLIDLYSRRKAAAGFA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ +++A + + I ++ ++
Sbjct: 597 FAKDNEWQTA---FEAAFPYEETEDQLTCIADVKTDMEKPVP 635
>gi|203284271|ref|YP_002222011.1| transcription factor, putative [Borrelia duttonii Ly]
gi|201083714|gb|ACH93305.1| transcription factor, putative [Borrelia duttonii Ly]
Length = 161
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 2/151 (1%)
Query: 20 IVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVE 79
+VYP GVG I I+ +E G ++++ I F ++M VPV +A D+G+R L VE
Sbjct: 9 VVYPMQGVGKIKNIQNKEFNGEFIDYYEIYFPFNEMTFMVPVARAADLGIRALVSKEKVE 68
Query: 80 RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139
+++ + D+++ A++ + L+ Q E + E+++
Sbjct: 69 EVFDIIKDFEGQIDQ--KKIKDGSHDFYKQSDILSTAKLYKFLYVKSMQKELPFYEKRIL 126
Query: 140 ESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ EI+ IS EA I LS
Sbjct: 127 NDFELILQHEISLALQISFEEAKEKIREVLS 157
>gi|160882450|ref|ZP_02063453.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483]
gi|156112162|gb|EDO13907.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483]
Length = 1120
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 538 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 579
>gi|299533693|ref|ZP_07047067.1| transcription-repair coupling factor [Comamonas testosteroni S44]
gi|298718415|gb|EFI59398.1| transcription-repair coupling factor [Comamonas testosteroni S44]
Length = 1163
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 53/188 (28%), Gaps = 32/188 (17%)
Query: 3 FQQKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------FFV 47
+++++ + G+ IV+ HG+G + ++ + F+
Sbjct: 460 RRRRQEQVSDVEALIKDLSELKVGDPIVHADHGIGRYRGLINMDMGQKNTDGTPALQEFL 519
Query: 48 IAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKI 107
L VPV + I + L + G K
Sbjct: 520 HLEYAADAVLYVPVSQLHLISRYTGVSPD--DAPLHKLGGTQ--------------WEKA 563
Query: 108 NSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIE 166
+ + +L ++ + +A + V + + + AI+ +
Sbjct: 564 KRKAAEQVRDSAAELLNIYARRAARQGHAFRFPTADYEQFVADFGFEETADQRAAIHAVV 623
Query: 167 VNLSSKSS 174
++ S
Sbjct: 624 QDMISPQP 631
>gi|218532420|ref|YP_002423236.1| transcription-repair coupling factor [Methylobacterium
chloromethanicum CM4]
gi|218524723|gb|ACK85308.1| transcription-repair coupling factor [Methylobacterium
chloromethanicum CM4]
Length = 1196
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%)
Query: 3 FQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
++ +D Q + G+ +V+ HG+G +K AG + + + L +P
Sbjct: 511 SKRPQDIILEVQALQPGDLVVHADHGIGRFVTLKTVTAAGAPHDCLELQYAG--GLLLLP 568
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V + + E AL + G A Q AK+ L ++++
Sbjct: 569 VENIELLTRY---GSEDSEVALDRLGGGA----------WQARKAKMKRRILEMAGDLIK 615
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S + E A + + AI+ + +L++
Sbjct: 616 IAAARFVKSAPSL---KAPEGLYEEFAARFAFQETEDQASAIDAVLDDLNAGRP 666
>gi|18309241|ref|NP_561175.1| CarD family transcriptional regulator [Clostridium perfringens str.
13]
gi|18143917|dbj|BAB79965.1| probable transcriptional regulator [Clostridium perfringens str.
13]
Length = 168
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 66/168 (39%), Gaps = 9/168 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE-VAGMKLEFFVIAFDK---DKMCLKVPVGKAIDIG 68
F+ ++I+Y GV + +I ++ + ++ E++V++ K + I
Sbjct: 1 MFKINDYIMYGTVGVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTVIKIPVDNKKIS 60
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH----- 123
MR L V + + + +R E+ + SG+ + ++R ++
Sbjct: 61 MRTLLSKEDVNSIINSIPETETLWIDNDRQRNDEFKTILRSGNCDDLIVLIRSIYLDKKK 120
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
R + + ++ ++A + E A + I E + I+ ++
Sbjct: 121 RKLDGKKACKGDDEIMQTAEKLINEEFAVILDIRPEEVKSYIKSHIPQ 168
>gi|219684504|ref|ZP_03539447.1| putative transcription factor [Borrelia garinii PBr]
gi|219671866|gb|EED28920.1| putative transcription factor [Borrelia garinii PBr]
Length = 162
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +VYP HGVGTI +I+ +E G ++++ I F M VPV K D G+R L
Sbjct: 3 FLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFSDMIFMVPVAKVDDFGIRALV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE +++ + + D++ A++ + L++ +Q E +
Sbjct: 63 SREKVEEVFDIIKEFEGQIDS--KKIKDGGHEFYKKSDILDTAKLYKFLYKKSTQKELPF 120
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ + EI+ IS EA I+ L
Sbjct: 121 YEKRILNDFELILEHEISLALQISFEEAKEKIKNILVDSKK 161
>gi|160947369|ref|ZP_02094536.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
gi|158446503|gb|EDP23498.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
Length = 1168
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ HG+G I++ EV G+ + +I K L +P + I
Sbjct: 501 TDLNVGDFVVHENHGIGEYRGIEQIEVDGIVKDHILI-LYKGNDKLYIPTDQMNLIQKYI 559
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + RA++ ++V+ + D
Sbjct: 560 G-----KDGYKPKLNKLGSNDWIKTKTRAKKVLD-------EIAIDLVQLYAKRDKIRGF 607
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++SE ++ + S+ AIN I+ ++
Sbjct: 608 AFSEDTTWQ---KEFEDSFIYEETYSQLRAINEIKKDMEQFKP 647
>gi|330961341|gb|EGH61601.1| transcription-repair coupling factor [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 1150
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 537 GSDDEMAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIEAVRADMLAPRP 624
>gi|15889082|ref|NP_354763.1| transcription-repair coupling factor [Agrobacterium tumefaciens
str. C58]
gi|15156884|gb|AAK87548.1| transcription-repair coupling factor [Agrobacterium tumefaciens
str. C58]
Length = 1165
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 21/177 (11%)
Query: 2 TFQQKR----DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KR A G G +V+ HG+G ++ E AG + + L
Sbjct: 482 SKRRKRGADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYAD-DAKL 540
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + E L + G A Q AK+ L E
Sbjct: 541 FLPVENIDLLSRY---GSDAAEATLDKLGGGA----------WQMRKAKLKKRLLDMADE 587
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + + + AI + +L +
Sbjct: 588 LIRIAAARLVRHAPALI---APDGLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRP 641
>gi|317506800|ref|ZP_07964575.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
BAA-974]
gi|316254911|gb|EFV14206.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
BAA-974]
Length = 1155
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 12/171 (7%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+++ +TG+ +V+ HGVG E+ E+ VAG + E+ V+ + K P
Sbjct: 518 RRRDQVDPLALKTGDFVVHDQHGVGRFVELVERTVAGARREYVVVEYASSKRGH--PPD- 574
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
R +++ + V G++ M + ++V+
Sbjct: 575 ------RLYVPMDALDQLSRYVGGESPALSKMGGSDWSNTKRQARKAVREIAGQLVQLYA 628
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ +++ + A + + I ++ ++ +
Sbjct: 629 ARQTAKGHAFGPDSPWQA---ELEGAFAHAPTPDQLTTIAEVKADMEREVP 676
>gi|261377774|ref|ZP_05982347.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
gi|269146063|gb|EEZ72481.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
Length = 1134
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G + ++ E ++ + + L VPV + I
Sbjct: 461 DLAEINIGDPVVHEEHGIGRYMGLVTMDLGDETNEMMLLEYAG-EAQLYVPVSQLHLISR 519
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S AL + A K + A + +L+ +
Sbjct: 520 Y--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDTAAELLNLYAQRAAQ 566
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +L+
Sbjct: 567 SGHKFEINEMD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 609
>gi|117621017|ref|YP_856534.1| transcription-repair coupling factor [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562424|gb|ABK39372.1| transcription-repair coupling factor [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 1154
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG ++ + G+ EF + + L VPV I
Sbjct: 484 ELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGD-KLFVPVTSLHLISRYTG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S+ + + K AE++ ++ +
Sbjct: 543 SDNPPSHKL--------------GGEAWVKARRKAAEKVRDVAAELLDVYAMRAARHGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + A + + + AIN + ++
Sbjct: 589 FKHDR---EAYRQFAAGFPFEETDDQLNAINAVLGDMCQAK 626
>gi|227832736|ref|YP_002834443.1| transcription-repair coupling factor [Corynebacterium aurimucosum
ATCC 700975]
gi|262182774|ref|ZP_06042195.1| transcription-repair coupling factor [Corynebacterium aurimucosum
ATCC 700975]
gi|227453752|gb|ACP32505.1| transcription-repair coupling factor [Corynebacterium aurimucosum
ATCC 700975]
Length = 1212
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/182 (12%), Positives = 59/182 (32%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFD-----K 52
+++ + G+++V+ HG+G ++ E+ V E+ V+ + +
Sbjct: 495 PAKRRNRVDPLALKQGDYVVHETHGIGKFLKMAERTVQSGDETSRREYIVLEYAASKRGQ 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + G+A M + K +
Sbjct: 555 PADQLWVPMDSLDLLSKYTG--------------GEAPTLSKMGGSDWKNTKKKARAAVR 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P + +++ + V + + AI+ ++ ++ S
Sbjct: 601 EIAGELVELYAKRQAAPGHQFGPDTPWQAEME---DNFPFVETEDQMLAIDAVKEDMEST 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|189466485|ref|ZP_03015270.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM
17393]
gi|189434749|gb|EDV03734.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM
17393]
Length = 1131
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 15/165 (9%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + + E + +++ + V + +
Sbjct: 437 ELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKL-VYQNEDVVFVSIHSLHKVSK 495
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K G+A + + ++ + + ++++ + +
Sbjct: 496 YKG------------KDGEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRREEK 543
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + ++ + +A ++ ++ S
Sbjct: 544 GFQFSVDSFLQR---ELEASFIYEDTPDQSKATADVKADMESNRP 585
>gi|110679958|ref|YP_682965.1| transcription-repair coupling factor [Roseobacter denitrificans OCh
114]
gi|109456074|gb|ABG32279.1| transcription-repair coupling factor [Roseobacter denitrificans OCh
114]
Length = 1154
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 24/178 (13%)
Query: 2 TFQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
+ ++KR + G+ IV+ HG+G ++ AG E ++ + +
Sbjct: 459 SSRRKRRAENFLTETESLSPGDLIVHVDHGIGRYKGLEVVTAAGAAHECILLEYA-ESSK 517
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L +PV + E L + G A Q A++
Sbjct: 518 LYLPVENIELLSKY-----GHEEGLLDRLGGGA----------WQAKKARLKERIREMAD 562
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++R + + + + AI + +L+S +
Sbjct: 563 KLIRVAAERALRKAPVLEPPPGM---WDAFSARFPYTETDDQLRAIADVIDDLTSGNP 617
>gi|293373528|ref|ZP_06619880.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f]
gi|292631492|gb|EFF50118.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f]
Length = 1119
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 426 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 484
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 485 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 532
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 533 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 574
>gi|237722279|ref|ZP_04552760.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4]
gi|229448089|gb|EEO53880.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4]
Length = 1124
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 538 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 579
>gi|120598668|ref|YP_963242.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
gi|120558761|gb|ABM24688.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
Length = 1162
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + + L VPV I +
Sbjct: 488 ELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSNLHLISRYSV 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ E AK + + I +V +L ++ +
Sbjct: 547 GADE----------------DAHLNKLGNETWAKAKNKAIEKIRDVAAELLDVYARRQAR 590
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E ++ E + + ++ + AI+ + ++ S
Sbjct: 591 PGESCEIDEEEYAQFAQGFPFEETVDQESAIHAVLADMRSP 631
>gi|302383042|ref|YP_003818865.1| transcription-repair coupling factor [Brevundimonas subvibrioides
ATCC 15264]
gi|302193670|gb|ADL01242.1| transcription-repair coupling factor [Brevundimonas subvibrioides
ATCC 15264]
Length = 1150
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R + TG+ +V+ HG+G +K ++ + + + L
Sbjct: 465 PKRKRRASNFLAEASALTTGDLVVHLDHGIGRYEGLKTLDIQEAPHDCLELLYAG-DSKL 523
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + R SE+ V+ R+ W R + A++ +
Sbjct: 524 YLPVENIDLL-TRYGSESDGVQ--------LDRLGGAAWQGRKAKAKARLR--------D 566
Query: 118 VVRDLHRTDSQPEKSYSE-RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L ++ E + + + AI + +L
Sbjct: 567 MAEGLIALAAKRALRVGEAITPPHGLFDEFCARFPYDETDDQLNAIGDVLEDLGKGVP 624
>gi|108762520|ref|YP_629274.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
gi|108466400|gb|ABF91585.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
Length = 1188
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ G+G + + EV G+ +F V+ + + +PVG MR +
Sbjct: 518 DLKEGDLIVHTDFGIGRYAGLTKMEVNGVPGDFLVLEYAGRD-KIYLPVG-----RMRLI 571
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + + +R +E K+ + L A + S
Sbjct: 572 QKFSGGDPTQVQLDKLGTTSWEKTKKRVKEQLLKMAAELLQIAAA-----RKAHPGHAFS 626
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + + + + +AI + ++
Sbjct: 627 APDRYFAQ-----FEADFEFEETPDQAKAIEDVLADMQKPEP 663
>gi|312113596|ref|YP_004011192.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC
17100]
gi|311218725|gb|ADP70093.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC
17100]
Length = 1249
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 21/176 (11%)
Query: 3 FQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+ K+ + G+ +V+ HG+G +K + AG + V L
Sbjct: 495 RKAKKASDVLVEASSLTPGDLMVHADHGIGRFIGLKTIDAAGAPHDC-VELEYAGGDKLF 553
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+P+ + R S+ + ++ W R + +I + I
Sbjct: 554 LPIENMELL-TRYGSDEGTAQ--------LDKLGGASWQGRKAKLKKRIRAMAEELI--K 602
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
V L P S+ A N V + + +I + +L+
Sbjct: 603 VAALREMKPAPVLQVSD-----GAYNEFVTRFPYEETDDQLASIEAVADDLAKGRP 653
>gi|289432962|ref|YP_003462835.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
gi|288946682|gb|ADC74379.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
Length = 1148
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/160 (11%), Positives = 54/160 (33%), Gaps = 16/160 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
+ GE +V+ HGV + + GM E+ ++ + L VP + + S
Sbjct: 485 KPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGD-KLYVPTDQMDRVNRFIGSG 543
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ + ++ Q K + E++ + + ++S
Sbjct: 544 ------------DEPPSLHRLGTQEWQRAKEKASESAEETARELLEIYAKRELASGYAFS 591
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + V + + +A+ ++ ++
Sbjct: 592 ADTVWQQEME---ASFSYVETPDQLKALYDVKEDMEKTRP 628
>gi|73748965|ref|YP_308204.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
gi|73660681|emb|CAI83288.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
Length = 1148
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/160 (11%), Positives = 54/160 (33%), Gaps = 16/160 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
+ GE +V+ HGV + + GM E+ ++ + L VP + + S
Sbjct: 485 KPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGD-KLYVPADQMDRVNRFIGSG 543
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ + ++ Q K + E++ + + ++S
Sbjct: 544 ------------DEPPSLHRLGTQEWQRAKEKASESAEETARELLEIYAKRELASGYAFS 591
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + V + + +A+ ++ ++
Sbjct: 592 ADTVWQQEME---ASFSYVETPDQLKALYDVKEDMEKTRP 628
>gi|294643129|ref|ZP_06720961.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a]
gi|292641537|gb|EFF59723.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a]
Length = 1119
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 426 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 484
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 485 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 532
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 533 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 574
>gi|262407555|ref|ZP_06084103.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22]
gi|262354363|gb|EEZ03455.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22]
Length = 1124
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + S ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKSKIKDIARDLIKLYSQRRQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 538 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATIDVKADMESDRP 579
>gi|52841189|ref|YP_094988.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52628300|gb|AAU27041.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 1153
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 27/184 (14%)
Query: 2 TFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50
+ Q+R + R G +V+ GVG ++ + G EF V+A+
Sbjct: 457 STPQRRSTQKSVDPDLIIRDMAELRLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAY 516
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ VPV I ++ L + + K +
Sbjct: 517 AG-DDKIYVPVTSLHMISRYTGVDSEHAP--LHKLGSEQWQKEKK-----------KAAE 562
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +A + DL+ + +S + + + +AI I ++
Sbjct: 563 KIHDVAIELLDLYAKREAQPGHQYD--FNQSEYIKFASGFPFTETPDQLQAIEQIIKDMQ 620
Query: 171 SKSS 174
S
Sbjct: 621 SPRP 624
>gi|148260750|ref|YP_001234877.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5]
gi|326403946|ref|YP_004284028.1| transcription-repair-coupling factor [Acidiphilium multivorum
AIU301]
gi|146402431|gb|ABQ30958.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5]
gi|325050808|dbj|BAJ81146.1| transcription-repair-coupling factor [Acidiphilium multivorum
AIU301]
Length = 1144
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ HG+G + V G + I L +PV +
Sbjct: 465 ADATEIAEGDLVVHQDHGIGRYDGLVTLSVEGAPHDCLRI-LYDGDQKLFLPVENIDML- 522
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R SE V G R+ W R AK + A ++R
Sbjct: 523 SRFGSETAGV--------GLDRLGGASWQAR----KAKARNRIRDMAAGLIRIAAER--- 567
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A + + AI + +L++
Sbjct: 568 KLHDAAILAADDGAFAEFCARFPYTETEDQARAIADVMEDLAAGKP 613
>gi|260060951|ref|YP_003194031.1| transcription-repair coupling factor [Robiginitalea biformata
HTCC2501]
gi|88785083|gb|EAR16252.1| transcription-repair coupling factor [Robiginitalea biformata
HTCC2501]
Length = 1121
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 58/174 (33%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G + E + D+ L V
Sbjct: 420 AKKQAITLKELNKLEIGDYVTHIDHGIGKFGGLQKIDVEGRQQEAIKL-IYGDRDILYVS 478
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I G + S ++ AK S ++++
Sbjct: 479 IHSLHKIAKYNG------------KDGTVPKIYKLGSAAWKKLKAKTKSRVKKIAFDLIQ 526
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + S++ + + + ++ + A ++ ++ S+
Sbjct: 527 VYAKRRMKKGFSHAPDSYLQ---HELEASFVYEDTPDQSTATEAVKADMESERP 577
>gi|304315715|ref|YP_003850860.1| transcription-repair coupling factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777217|gb|ADL67776.1| transcription-repair coupling factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 1166
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G ++V+ +G+G I++ G+ ++ I + L +PV + I
Sbjct: 498 TELTVGSYVVHVNYGIGKYEGIEKITFDGVTKDYLKIKYAG-DDKLFIPVDQLDLIQKYI 556
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
E K + + K ++++ + +
Sbjct: 557 GPE------------DKPPKLNKLGGNEWSKLKKKAKKAVEDLAKDLIKLYAKRQTMKGY 604
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ ++ + + I I+ ++ S
Sbjct: 605 AFSKDTPWQ---KDFEERFPYEETEDQLRCIEEIKRDMESDKP 644
>gi|212712824|ref|ZP_03320952.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
30120]
gi|212684516|gb|EEB44044.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
30120]
Length = 1148
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G+ E+ ++ + + L VPV I
Sbjct: 475 ELRPGQPVVHIEHGVGRYQGLITLEAGGIPAEYLILTYAGED-KLYVPVSSLHLISRYAG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S K AE++ + ++ +
Sbjct: 534 GADENAP------------LHKLGSDSWGRARQKAAEKVRDVAAELLDIYAQRAAKAGFA 581
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AIN + ++ +
Sbjct: 582 FKHD---KEQYQEFCQGFPFETTPDQEMAINAVLSDMCQPLA 620
>gi|330889122|gb|EGH21783.1| transcription-repair coupling factor [Pseudomonas syringae pv. mori
str. 301020]
Length = 1150
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ + S Q+ K AE++ R ++
Sbjct: 537 GSDDESAP------------LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIEAVRADMLAPKP 624
>gi|71736642|ref|YP_274082.1| transcription-repair coupling factor [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557195|gb|AAZ36406.1| transcription-repair coupling factor [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 1150
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 537 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I+ + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKP 624
>gi|88860092|ref|ZP_01134731.1| transcription-repair ATP-dependent coupling factor
[Pseudoalteromonas tunicata D2]
gi|88818086|gb|EAR27902.1| transcription-repair ATP-dependent coupling factor
[Pseudoalteromonas tunicata D2]
Length = 1157
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGVG ++ + AG++ EF V + L VPV +
Sbjct: 485 ELKVGQPIVHLDHGVGRYQGLQTLDAAGVQTEF-VTISYNGEAKLYVPVSALHMLTRY-- 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S L + + K + +V +L ++ +
Sbjct: 542 SGGEEASAPLHKLGS--------------DVWEKAKRKAAEKVRDVAAELLDIYAKRKIK 587
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A + V + + AI+ + ++ S +
Sbjct: 588 LGNAFRHDKKAYRQFVDTFPFEETEDQKNAISAVLTDMQSPQA 630
>gi|331657177|ref|ZP_08358139.1| transcription-repair coupling factor [Escherichia coli TA206]
gi|331055425|gb|EGI27434.1| transcription-repair coupling factor [Escherichia coli TA206]
Length = 736
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 64 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 122
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 123 GAEE--NAPLHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 170
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 171 FKHDR---EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 209
>gi|159044110|ref|YP_001532904.1| transcription repair coupling factor [Dinoroseobacter shibae DFL
12]
gi|157911870|gb|ABV93303.1| transcription repair coupling factor [Dinoroseobacter shibae DFL
12]
Length = 1160
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 26/179 (14%)
Query: 2 TFQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
T ++KR G+ +V+ HGVG ++ G E ++ +
Sbjct: 469 TTKRKRRAENFLQEATSLSAGDLVVHVDHGVGAFKGLETVTAMGAPHECLLLEYAGGD-R 527
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L +PV LS L + G A Q AK+
Sbjct: 528 LYLPVENIEL-----LSRFGQEIGMLDKLGGGA----------WQAKKAKLKERIREMAD 572
Query: 117 EVVRDLHRTDSQP-EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++R + ++E+ + + AI + +L++ +
Sbjct: 573 KLIRIAAERALRRAPMLEPPPDMWEA----FSARFPYTETDDQLSAIEDVVHDLAAGTP 627
>gi|153835235|ref|ZP_01987902.1| transcription-repair coupling factor [Vibrio harveyi HY01]
gi|148868273|gb|EDL67407.1| transcription-repair coupling factor [Vibrio harveyi HY01]
Length = 1153
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVSSLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEESAP--LHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGYKFELDRGQYATFKATFPFEETDDQSTAINAVLSDMCQAKA 624
>gi|224531667|ref|ZP_03672299.1| putative transcription factor [Borrelia valaisiana VS116]
gi|224511132|gb|EEF81538.1| putative transcription factor [Borrelia valaisiana VS116]
Length = 162
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 2/156 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +VYP HGVGTI +I+ +E G ++++ I F M VPV K D G+R L
Sbjct: 3 FLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFSDMIFMVPVAKVDDFGIRALV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE +++ + + D++ A++ + L++ +Q E +
Sbjct: 63 SREKVEEVFDVIKEFEGQIDS--KKIKDGGHEFYKKSDILDTAKLYKFLYKKSTQKELPF 120
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
E+++ + EI+ IS EA I+ L
Sbjct: 121 YEKRILNDFELILEHEISLALQISFEEAKEKIKNIL 156
>gi|51598613|ref|YP_072801.1| transcription factor, putative [Borrelia garinii PBi]
gi|219685417|ref|ZP_03540235.1| putative transcription factor [Borrelia garinii Far04]
gi|51573184|gb|AAU07209.1| transcription factor, putative [Borrelia garinii PBi]
gi|219672973|gb|EED29994.1| putative transcription factor [Borrelia garinii Far04]
Length = 162
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +VYP HGVGTI +I+ +E G ++++ I F M VPV K D G+R L
Sbjct: 3 FLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFSDMIFMVPVAKVDDFGIRALV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE +++ + + D++ A++ + L++ +Q E +
Sbjct: 63 SREKVEEVFDVIKEFEGQIDS--KKIKDGGHEFYKKSDILDTAKLYKFLYKKSTQKELPF 120
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ + EI+ IS EA I+ L
Sbjct: 121 YEKRILNDFELILEHEISLALQISFEEAKEKIKNILVDNKK 161
>gi|294674288|ref|YP_003574904.1| transcription-repair coupling factor [Prevotella ruminicola 23]
gi|294471847|gb|ADE81236.1| transcription-repair coupling factor [Prevotella ruminicola 23]
Length = 1122
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 52/165 (31%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q F G+++V+ HGVG + E + + + V + +
Sbjct: 414 EIQQFEIGDYVVHVDHGVGRFGGLVRMPQGDGYQEMIKL-TYQHGDAIYVSIHSLYKVAK 472
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K + G+A T+ + + + + ++++ + +
Sbjct: 473 YKSQDN-----------GEAPRLSTLGTGQWERLKERTKQHIKEIARDLIKLYAKRRKEK 521
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++
Sbjct: 522 GFAFSRDSYLQ---HELEASFLYEDTPDQLKATQDVKADMEKARP 563
>gi|320324788|gb|EFW80860.1| transcription-repair coupling factor [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329153|gb|EFW85150.1| transcription-repair coupling factor [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 1150
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 537 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I+ + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKP 624
>gi|312864113|ref|ZP_07724348.1| transcription-repair coupling factor [Streptococcus vestibularis
F0396]
gi|311100345|gb|EFQ58553.1| transcription-repair coupling factor [Streptococcus vestibularis
F0396]
Length = 1066
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ +D + +PV + +
Sbjct: 360 ELEKGDYVVHQTHGIGQFKGIETIEIKGVHRDYL-TIQYQDAATISLPVEQIESLSKYVS 418
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ ++++ +
Sbjct: 419 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFA 466
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + ++ + +I ++ ++ S
Sbjct: 467 FSPDDDNQRDFDDD---FSYAETVDQLRSIKEVKEDMESDKP 505
>gi|329120140|ref|ZP_08248810.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
BAA-1200]
gi|327463671|gb|EGF09989.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
BAA-1200]
Length = 1290
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 53/182 (29%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDA--------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
+ ++K+ A G+ +V+ HG+G + ++ G E ++ +
Sbjct: 603 STRRKKHAAVSDGLLRDLAEISIGDPVVHEEHGIGRYMGLVSMDLGGEAQEMMLLEYAG- 661
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ L VPV + I + V+ L + A K
Sbjct: 662 EAQLYVPVSQLHLISRYSGAAHENVQ--LHKLGSAA--------------WNKAKRKAAE 705
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ +L ++ + ++ + + AI + +L+
Sbjct: 706 KARDTAAELLNLYARRAAQEGHKFQFDEDDYRAFADGFGYEETEDQAAAIAAVIKDLTQA 765
Query: 173 SS 174
Sbjct: 766 RP 767
>gi|330973230|gb|EGH73296.1| transcription-repair coupling factor [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 1150
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 537 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I+ + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKP 624
>gi|306841480|ref|ZP_07474180.1| transcriptional regulator [Brucella sp. BO2]
gi|306288444|gb|EFM59800.1| transcriptional regulator [Brucella sp. BO2]
Length = 136
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 94/133 (70%), Positives = 111/133 (83%), Gaps = 1/133 (0%)
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
M LKVPV KA IGMRKLSE +VERALK+V+G+ARVKRTMWSRRAQEYDAKINSGDLI+
Sbjct: 1 MRLKVPVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLIS 60
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
I+EVVRDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+ LIEVNL+
Sbjct: 61 ISEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLAKG-P 119
Query: 175 KTEKSTSENQDKA 187
K K+ +E D
Sbjct: 120 KRGKAEAELDDDE 132
>gi|66045137|ref|YP_234978.1| transcription-repair coupling factor [Pseudomonas syringae pv.
syringae B728a]
gi|63255844|gb|AAY36940.1| Transcription-repair coupling factor [Pseudomonas syringae pv.
syringae B728a]
Length = 1150
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 537 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I+ + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKP 624
>gi|330982230|gb|EGH80333.1| transcription-repair coupling factor [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 1150
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 537 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I+ + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKP 624
>gi|15594700|ref|NP_212489.1| transcription factor, putative [Borrelia burgdorferi B31]
gi|195941293|ref|ZP_03086675.1| transcription factor, putative [Borrelia burgdorferi 80a]
gi|216264671|ref|ZP_03436663.1| putative transcription factor [Borrelia burgdorferi 156a]
gi|218249763|ref|YP_002374875.1| putative transcription factor [Borrelia burgdorferi ZS7]
gi|223889019|ref|ZP_03623610.1| putative transcription factor [Borrelia burgdorferi 64b]
gi|224533174|ref|ZP_03673774.1| putative transcription factor [Borrelia burgdorferi WI91-23]
gi|224533714|ref|ZP_03674302.1| putative transcription factor [Borrelia burgdorferi CA-11.2a]
gi|225549124|ref|ZP_03770099.1| putative transcription factor [Borrelia burgdorferi 94a]
gi|226320426|ref|ZP_03795993.1| putative transcription factor [Borrelia burgdorferi 29805]
gi|226321672|ref|ZP_03797198.1| putative transcription factor [Borrelia burgdorferi Bol26]
gi|2688253|gb|AAC66731.1| transcription factor, putative [Borrelia burgdorferi B31]
gi|215981144|gb|EEC21951.1| putative transcription factor [Borrelia burgdorferi 156a]
gi|218164951|gb|ACK75012.1| putative transcription factor [Borrelia burgdorferi ZS7]
gi|223885835|gb|EEF56934.1| putative transcription factor [Borrelia burgdorferi 64b]
gi|224511901|gb|EEF82302.1| putative transcription factor [Borrelia burgdorferi WI91-23]
gi|224513007|gb|EEF83370.1| putative transcription factor [Borrelia burgdorferi CA-11.2a]
gi|225370350|gb|EEG99788.1| putative transcription factor [Borrelia burgdorferi 94a]
gi|226232861|gb|EEH31614.1| putative transcription factor [Borrelia burgdorferi Bol26]
gi|226234179|gb|EEH32893.1| putative transcription factor [Borrelia burgdorferi 29805]
gi|312148240|gb|ADQ30899.1| transcription factor, putative [Borrelia burgdorferi JD1]
gi|312149526|gb|ADQ29597.1| transcription factor, putative [Borrelia burgdorferi N40]
Length = 162
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L
Sbjct: 3 FLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRALV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE +++ + + D++ A++ + L++ +Q E +
Sbjct: 63 SREKVEEVFDVIKEFEGQIDS--KKIKDGGHEFYKKSDILDTAKLYKFLYKKSTQKELPF 120
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ + EI+ IS EA I+ L
Sbjct: 121 YEKRILNDFELILEHEISLALQISFEEAKKKIKNILVDNKK 161
>gi|329999583|ref|ZP_08303456.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3]
gi|328538286|gb|EGF64428.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3]
Length = 1126
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 454 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 512
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 513 GAEE--NAPLHKLGGDA----------WTRARQKAAEKVRDVAAELLDIYAQRAAKAGFA 560
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 561 FKHDR---EQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLA 599
>gi|312898732|ref|ZP_07758121.1| transcription-repair coupling factor [Megasphaera micronuciformis
F0359]
gi|310620163|gb|EFQ03734.1| transcription-repair coupling factor [Megasphaera micronuciformis
F0359]
Length = 1092
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G+++V+ HG+G IK E G+ ++ I + + L VP + +
Sbjct: 419 NAFTDLHAGDYVVHDTHGIGKYVGIKTIETDGVHKDYLEIHYSGHDV-LYVPTDQIQFLQ 477
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+E G+A M ++ AK ++V + +
Sbjct: 478 RYIGNE------------GEAPRLSRMGGADWKKARAKAQKSIDNLAEKLVALYAKREIT 525
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + +A+ I+ ++
Sbjct: 526 DGYAFPPDTPFQ---QEFEEAFPYEETQDQLKAVAAIKESMEKPVP 568
>gi|313203296|ref|YP_004041953.1| transcriptioN-repair coupling factor [Paludibacter propionicigenes
WB4]
gi|312442612|gb|ADQ78968.1| transcription-repair coupling factor [Paludibacter propionicigenes
WB4]
Length = 1113
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F+ G+++V+ HGVGT + + V G E V KD + V + I
Sbjct: 426 ELNQFQIGDYMVHVDHGVGTFGGLIKTNVNGKMQE-MVKLVYKDDDIIFVSIHALHRISK 484
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G++ + S + + S E+++ + ++
Sbjct: 485 YKGKE------------GESPRINKLGSGAWERLKERTKSKVKDIARELIKLYAKRKAEQ 532
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + ++ + ++ ++ ++ S
Sbjct: 533 GFQFSPDSYLQ---QELEASFIYEDTPDQIKSTADVKKDMESTLP 574
>gi|294083797|ref|YP_003550554.1| transcription-repair coupling factor [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663369|gb|ADE38470.1| transcription-repair coupling factor [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 1158
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 48/165 (29%), Gaps = 10/165 (6%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
TG+ +V+ HG+G + AG + + L +PV +
Sbjct: 478 EVSALETGDLVVHAEHGIGRYDGLVTINSAGGDHDCLHL-VYHGGDKLYLPVENIELLSR 536
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ W R A+I I ++++ + +
Sbjct: 537 YGSGGSGSGGSGSDA--QLDKLGGAAWQAR----VARIKGRVRIMAEQLIKIAAQRHTAK 590
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + V + + AI + +L+S +
Sbjct: 591 AEPLLATDGL---FAEFCDRFSFVETDDQLNAIQDVIDDLASGKA 632
>gi|187477560|ref|YP_785584.1| transcription-repair coupling factor [Bordetella avium 197N]
gi|115422146|emb|CAJ48670.1| transcription-repair coupling factor [Bordetella avium 197N]
Length = 1145
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G+ +V+ HG+G + ++ ++EF + + L VPV + I
Sbjct: 476 DLAELREGDPVVHAQHGIGRYHGLINMDMGEGEMEFLHLEYA-SGATLYVPVSQLHVIAR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + K + + +L +Q
Sbjct: 535 YSGADPEAAP--LHQLGSGQ--------------WDKARKKAAKQVRDTAAELLALYAQR 578
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S ++ + AI + ++++S
Sbjct: 579 AAREGYAFNLPLSDYESFAEGFGFEETVDQSAAIQAVIMDMTSGKP 624
>gi|322515787|ref|ZP_08068732.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
gi|322125749|gb|EFX97067.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
Length = 1195
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ ++ +D + +PV + +
Sbjct: 489 ELEKGDYVVHQTHGIGQFKGIETIEIKGVHRDYL-TIQYQDAATISLPVEQIESLSKYVS 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ GK + R Q+ K++ ++++ +
Sbjct: 548 A------------DGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFA 595
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + ++ + +I ++ ++ S
Sbjct: 596 FSPDDDNQRDFDDD---FSYAETVDQLRSIKEVKADMESDKP 634
>gi|110833889|ref|YP_692748.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
gi|110647000|emb|CAL16476.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
Length = 1159
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 20/160 (12%)
Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G +V+ HGVG + EV + EF ++ + L VPV I +
Sbjct: 487 VGSPVVHLEHGVGRYLGLTHMEVHRQQHEFLLLEYAGGD-KLYVPVSSLHLISRYGGGDT 545
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
+ R E K I +V +L T ++ E
Sbjct: 546 APLNRLGT------------------EQWTKARQKAAEKIHDVAAELLNTYARREAREGR 587
Query: 136 RQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +R + + AI + ++ S
Sbjct: 588 QFELDLNDYDRFSASFPFEETPDQQAAIASVVADMQSSQP 627
>gi|297171405|gb|ADI22408.1| transcription-repair coupling factor (superfamily II helicase)
[uncultured Planctomycetales bacterium HF0500_02G17]
Length = 1114
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 53/171 (30%), Gaps = 24/171 (14%)
Query: 13 GFRTGEHIVYPAHGVGTITEIK---------EQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
G+++V+ HG+ ++ + + E ++ K VP
Sbjct: 429 DLSVGDYVVHVDHGIAVFAGLELMKPKPLPGKLSPRKREAEEYLALEFAGKSKYYVPATS 488
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
+ + L + GK + + +++ G AE++R
Sbjct: 489 IDQVQKY--VGGFHGKPPLSTLGGK----------KWKAQKERVSEGVRDLAAEMLRVRA 536
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S P Y ++ E + + A+ I+ ++SS
Sbjct: 537 ARESMPGVRYPADTPWQ---KEFEAEFPYDETEDQLAALAEIKKDMSSDRP 584
>gi|168210546|ref|ZP_02636171.1| transcriptional regulator, CarD family [Clostridium perfringens B
str. ATCC 3626]
gi|170711361|gb|EDT23543.1| transcriptional regulator, CarD family [Clostridium perfringens B
str. ATCC 3626]
Length = 168
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE-VAGMKLEFFVIAFDK---DKMCLKVPVGKAIDIG 68
F+ ++I+Y GV + +I ++ + ++ E++V++ K + I
Sbjct: 1 MFKINDYIMYGTVGVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTVIKIPVDNKKIS 60
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH----- 123
MR L V + + + +R E+ + SG + ++R ++
Sbjct: 61 MRTLLSKEDVNSIINSIPETETLWIDNDRQRNDEFKTMLRSGICDDLIVLIRSIYLDKKK 120
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
R + + ++ ++A + E A + I E + I+ ++
Sbjct: 121 RKLDGKKACKGDDEIMQTAEKLINEEFAVILDIRPEEVKSYIKSHIPQ 168
>gi|325954433|ref|YP_004238093.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
gi|323437051|gb|ADX67515.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
Length = 1114
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 58/174 (33%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQG---FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K + + G+++ + +G+G + E G++ E + F ++ L V
Sbjct: 413 SKKEAITLKEINSLQVGDYVTHIDYGIGKFAGLVRIENNGVQQESIKL-FYQNNDILYVN 471
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I + G + S + K + ++++
Sbjct: 472 IHSLHKISK------------FRGKDGVEPKISKLGSPAWRNLKNKTKTKVKEIAFDLIK 519
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Q ++S + N + ++ + +A ++ ++ S+
Sbjct: 520 LYAKRRTQKGFAFSPDTYLQ---NELEASFIYEDTPDQEKATLDVKNDMESERP 570
>gi|227501542|ref|ZP_03931591.1| possible transcription-repair coupling factor [Corynebacterium
accolens ATCC 49725]
gi|227077567|gb|EEI15530.1| possible transcription-repair coupling factor [Corynebacterium
accolens ATCC 49725]
Length = 1213
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 59/182 (32%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFD-----K 52
+++ + G+ +V+ HG+G ++ E+ + E+ V+ + +
Sbjct: 496 PAKRRNKVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSRREYIVLEYAPSKRGQ 555
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + S ++ M + K +
Sbjct: 556 PADQLWVPMDSLDLLSKYTGS--------------ESPHLSKMGGSDWKNTKKKARAAVR 601
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++ +++ + V + + AI+ ++ ++ S
Sbjct: 602 EIAGELVDLYAKRQAAPGHQFAPDNPWQAEME---DNFPFVETEDQMLAIDAVKEDMEST 658
Query: 173 SS 174
Sbjct: 659 VP 660
>gi|153807964|ref|ZP_01960632.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185]
gi|149129573|gb|EDM20787.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185]
Length = 1141
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 449 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 507
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 508 YKGKE------------GEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRRQEK 555
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 556 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATVDVKTDMESDRP 597
>gi|307609748|emb|CBW99260.1| transcription-repair coupling factor [Legionella pneumophila 130b]
Length = 1153
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 54/184 (29%), Gaps = 27/184 (14%)
Query: 2 TFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50
+ Q+R + R G +V+ GVG ++ + G EF V+A+
Sbjct: 457 STPQRRSTQKSVDPDLIIRDMAELRLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAY 516
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ VPV I ++ L + K +
Sbjct: 517 AG-DDKIYVPVTSLHMISRYTGVDSEHAP--LHKLGSDQWQKEKK-----------KAAE 562
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +A + DL+ + +S + + + +AI I ++
Sbjct: 563 KIHDVAIELLDLYAKREAQPGHQYD--FNQSEYIKFASGFPFTETPDQLQAIEQIIKDMQ 620
Query: 171 SKSS 174
S
Sbjct: 621 SPRP 624
>gi|255318947|ref|ZP_05360172.1| transcription-repair coupling factor [Acinetobacter radioresistens
SK82]
gi|262378317|ref|ZP_06071474.1| transcription-repair coupling factor [Acinetobacter radioresistens
SH164]
gi|255303964|gb|EET83156.1| transcription-repair coupling factor [Acinetobacter radioresistens
SK82]
gi|262299602|gb|EEY87514.1| transcription-repair coupling factor [Acinetobacter radioresistens
SH164]
Length = 1153
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 47/164 (28%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + + EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLVTLSIDDQEYEFLQLDYA-EGAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ W+ K L I +V +L ++
Sbjct: 539 GGDPD--------LAPLHKIGSDAWN--------KAKRKALEQIHDVAAELLHIQARRHA 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFEIDQSLYMQFASGFAYEETLDQANAIEATLYDMQKAEP 626
>gi|156973818|ref|YP_001444725.1| transcription-repair coupling factor [Vibrio harveyi ATCC BAA-1116]
gi|156525412|gb|ABU70498.1| hypothetical protein VIBHAR_01528 [Vibrio harveyi ATCC BAA-1116]
Length = 1153
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVSSLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEESAP--LHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGYKFELDRGQYATFKATFPFEETDDQSTAINAVLSDMCQAKA 624
>gi|302184811|ref|ZP_07261484.1| transcription-repair coupling factor [Pseudomonas syringae pv.
syringae 642]
Length = 1150
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 537 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I+ + ++ +
Sbjct: 585 AFAD---PKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKP 624
>gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1]
Length = 1188
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 16/159 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
G+++V+ +G+G +++ EV G ++ VI + + L V + I +
Sbjct: 509 SVGDYVVHEKYGIGIYRGLEKIEVDGALKDYLVIEYA-EGGKLYVLASETDRIQKYR--S 565
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ + G Q+ K+ +V+ ++ +YS
Sbjct: 566 KESRAPKINRLGGSE----------WQKVRNKVKGHVSEVAQHLVKLYSERQAREGFAYS 615
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + +AI ++ ++ S
Sbjct: 616 PDSEWQ---KEFEETFPYTETDDQLKAIEDVKADMESHK 651
>gi|262043184|ref|ZP_06016320.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039462|gb|EEW40597.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 1148
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WTRARQKAAEKVRDVAAELLDIYAQRAAKAGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|24373808|ref|NP_717851.1| transcription-repair coupling factor [Shewanella oneidensis MR-1]
gi|24348203|gb|AAN55295.1|AE015667_5 transcription-repair coupling factor [Shewanella oneidensis MR-1]
Length = 1164
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + L VPV I +
Sbjct: 486 ELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLE-YSGGDKLYVPVSNLHLISRYSV 544
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
T ++ + AK + + I +V +L ++ +
Sbjct: 545 GADG----------------ETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQAR 588
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E ++ + + + ++ + AI+ + ++ S ++
Sbjct: 589 PGESCEINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSPTA 631
>gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
Length = 1192
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 54/175 (30%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G +++ V+G ++ V+ + L+V
Sbjct: 485 RRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAVSGDVRDYLVVQYA--DGLLRV 542
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + M + + ++V
Sbjct: 543 AADQLGSLGRYRATS------------ETPPQLSKMGGAAWTKAKERAKKAVRKVAMDLV 590
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ N + + + +A ++ ++
Sbjct: 591 KLYAERHQANGFAFPSDGPWQ---NELEESFPYEPTPDQLKATADVKRDMEKAEP 642
>gi|330445693|ref|ZP_08309345.1| transcription-repair coupling factor [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489884|dbj|GAA03842.1| transcription-repair coupling factor [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 1143
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E G+K E +V + L VPV I
Sbjct: 472 ELQIGQPVVHIDHGIGRYQGLQTLEAGGIKTE-YVTLEYQGGAKLYVPVASLHLISRYSG 530
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + G E AK + +V +L ++ E
Sbjct: 531 GAEETAP--IHKLGG--------------ETWAKARKKAAEKVRDVAAELLDVYAKRELK 574
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + A + + AIN + ++
Sbjct: 575 PGFKFTLDREAYAEFSAGFPYEETYDQALAINAVLSDMCQTK 616
>gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
Length = 1194
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 16/175 (9%), Positives = 57/175 (32%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R + G+ +V+ HG+G ++++ ++G ++ V+ + L+V
Sbjct: 487 RRRKAASRTVDPNKMQPGDFVVHRNHGIGRFQKLEKLAISGEVRDYLVVQYA--DGILRV 544
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + M + + + ++V
Sbjct: 545 AADQLGSLGRYRANS------------DSPPQLSKMGGSAWVKAKERASKAVRKVALDLV 592
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ +++ + + + +A ++ ++
Sbjct: 593 KLYAERHQAPGFAFPIDGPWQT---ELEDSFPYEPTPDQLKATAEVKRDMEKSQP 644
>gi|311104675|ref|YP_003977528.1| transcription-repair coupling factor [Achromobacter xylosoxidans
A8]
gi|310759364|gb|ADP14813.1| transcription-repair coupling factor [Achromobacter xylosoxidans
A8]
Length = 1154
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G+ +V+ HG+G + ++ +EF + + L VPV + I
Sbjct: 485 DLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGGMEFLHLEYAN-GSTLYVPVSQLHVIAR 543
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + K + + +L +Q
Sbjct: 544 YSGADPEAAP--LHQLGSGQ--------------WDKARRKAARQVRDTAAELLALYAQR 587
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + AI + +++S
Sbjct: 588 AAREGYAFNLPLNDYQAFAEGFGFEETVDQAAAIEAVIADMTSGRP 633
>gi|306835701|ref|ZP_07468707.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
49726]
gi|304568419|gb|EFM43978.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
49726]
Length = 1213
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 59/182 (32%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFD-----K 52
+++ + G+ +V+ HG+G ++ E+ + E+ V+ + +
Sbjct: 496 PAKRRNKVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSRREYIVLEYAPSKRGQ 555
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + G++ M + K +
Sbjct: 556 PADQLWVPMDSLDLLSKYTG--------------GESPHLSKMGGSDWKNTKKKARAAVR 601
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++ +++ + V + + AI+ ++ ++ S
Sbjct: 602 EIAGELVDLYAKRQAAPGHQFAPDNPWQAEME---DNFPFVETEDQMLAIDAVKEDMEST 658
Query: 173 SS 174
Sbjct: 659 VP 660
>gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Microcoleus chthonoplastes
PCC 7420]
gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Microcoleus chthonoplastes
PCC 7420]
Length = 1192
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 17/175 (9%), Positives = 62/175 (35%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + G+++V+ HG+G +++ + E+ VI + L+V
Sbjct: 510 KRRRAASKQVDPNKLTPGDYVVHKNHGIGQFVKLESLTLNHQTREYLVIKYA--DGLLRV 567
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + + +A M S+ ++ ++ +++
Sbjct: 568 AADQVGVLSRYRRA------------DSRAPQLNKMSSKAWEKTKNRVRKTIKKLAVDLL 615
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + ++ E ++ + + + + +A+ ++ +L S
Sbjct: 616 KLYAQRSQRSGYAFPEDSSWQ---DELEESFPYQPTPDQLKAVQDVKRDLESDRP 667
>gi|299136367|ref|ZP_07029551.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
gi|298602491|gb|EFI58645.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
Length = 1301
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 54/166 (32%), Gaps = 14/166 (8%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G+++V+ HG+ ++ + +I D L VP+ + I
Sbjct: 530 SDFRDLAVGDYVVHVEHGIARYEGLRTLDQPDAPPLELMILNFADDAKLYVPLTRLDLIQ 589
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ +E G A + + + A++ E+++ + +
Sbjct: 590 KYRSTET-----------GPAPQLNRLGNPAWAKTKARVKKAMQDMAEELLKLYAQRKAA 638
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + AI I+ ++ S
Sbjct: 639 VGTAFSPDTNMQ---HEFEDAFDFNETDDQLRAIADIKADMESTQP 681
>gi|228471775|ref|ZP_04056548.1| transcription-repair coupling factor [Capnocytophaga gingivalis
ATCC 33624]
gi|228276928|gb|EEK15623.1| transcription-repair coupling factor [Capnocytophaga gingivalis
ATCC 33624]
Length = 1110
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 16/174 (9%), Positives = 51/174 (29%), Gaps = 19/174 (10%)
Query: 4 QQKRDA---MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ G+++ + HG+G +++ ++ G K E + D+ L V
Sbjct: 416 AKKQAITLKELHQLTIGDYVTHIDHGIGKYAGLQKIDIEGKKQEAIKL-IYGDRDVLYVS 474
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I G + S + K + +++
Sbjct: 475 IHSLHKISKYNG------------KDGAPPRLYKLGSSAWKALKQKTKARVKQIAFNLIQ 522
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ + + ++ + +A ++ ++
Sbjct: 523 LYAKRREAVGYAFAPDSYLQ---KELEASFIYEDTPDQSKATLEVKQDMERARP 573
>gi|163802119|ref|ZP_02196015.1| transcription-repair coupling factor [Vibrio sp. AND4]
gi|159174260|gb|EDP59068.1| transcription-repair coupling factor [Vibrio sp. AND4]
Length = 1153
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V +++ L VPV IG
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNEAKLYVPVSSLNLIGRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEESAP--LHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGYKFELDRGQYATFKATFPFEETDDQSMAINAVLSDMCQAKA 624
>gi|29345662|ref|NP_809165.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron
VPI-5482]
gi|253567649|ref|ZP_04845060.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6]
gi|29337554|gb|AAO75359.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron
VPI-5482]
gi|251841722|gb|EES69802.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6]
Length = 1127
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 54/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K G+A + + ++ + + ++++ + +
Sbjct: 490 YKG------------KDGEAPRLNKLGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 538 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATMEVKADMESDRP 579
>gi|319441663|ref|ZP_07990819.1| transcription-repair coupling factor [Corynebacterium variabile DSM
44702]
Length = 1231
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 54/173 (31%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+ +V+ HG+G ++ E+ + A ++ + L+
Sbjct: 521 AAKKRNRVDPLALEPGDLVVHDQHGIGRFVKMTERTIGKGDD-----ASRREYLVLEYAP 575
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G + ++ + V G+ M + K AE+V+
Sbjct: 576 SKRGGPGDQLYVPMDQLDMLSRYVGGEKPALSKMGGSDWKTAKKKARGAVREIAAELVQL 635
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ + + + + AI ++ ++
Sbjct: 636 YAARQAAPGFAFDPDNQWTRQME---EAFPFTETEDQYNAIEAVKDDMEKPVP 685
>gi|54293927|ref|YP_126342.1| transcription-repair coupling factor [Legionella pneumophila str.
Lens]
gi|53753759|emb|CAH15217.1| Transcription-repair coupling factor [Legionella pneumophila str.
Lens]
Length = 1153
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 54/184 (29%), Gaps = 27/184 (14%)
Query: 2 TFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50
+ Q+R + R G +V+ GVG ++ + G EF V+A+
Sbjct: 457 STPQRRSTQKSVDPDLIIRDMAELRLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAY 516
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ VPV I ++ L + K +
Sbjct: 517 AG-DDKIYVPVTSLHMISRYTGVDSEHAP--LHKLGSDQWQKEKK-----------KAAE 562
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +A + DL+ + +S + + + +AI I ++
Sbjct: 563 KIHDVAIELLDLYAKREAQPGHQYD--FNQSEYIKFASGFPFTETPDQLQAIEQIIKDMQ 620
Query: 171 SKSS 174
S
Sbjct: 621 SPRP 624
>gi|290510825|ref|ZP_06550195.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
gi|289777541|gb|EFD85539.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
Length = 1148
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WTRARQKAAEKVRDVAAELLDIYAQRAAKAGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|261494132|ref|ZP_05990635.1| transcription repair coupling factor [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496027|ref|ZP_05992437.1| transcription repair coupling factor [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261308277|gb|EEY09570.1| transcription repair coupling factor [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310298|gb|EEY11498.1| transcription repair coupling factor [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 1177
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + L VPV I
Sbjct: 508 ELKIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYAN-DAKLYVPVASLHLISRYIG 566
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E AK I +V +L ++ E
Sbjct: 567 GADETA----------------PLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQ 610
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ A ++ + + AIN + ++ +
Sbjct: 611 TGFAFAYDKAEFDQFSATFPYEETDDQKIAINAVISDMCQAKA 653
>gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor (superfamily II helicase)
[Eubacterium eligens ATCC 27750]
gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase)
[Eubacterium eligens ATCC 27750]
Length = 1206
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 61/169 (36%), Gaps = 17/169 (10%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K A G+++V+ +G+G I++ +V G++ ++ I++ L V +
Sbjct: 516 KNIAGFNELNIGDYVVHENYGIGQYKGIEKIKVEGVEKDYIKISYAD-NSNLYVLATQLD 574
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ S+ + K+ + K S A+ EV +DL
Sbjct: 575 RLQKFAGSDVEKKPKLNKIGGSE---------------WGKTKSKVHSAVEEVAKDLVEL 619
Query: 126 DSQPEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + ++ + E + + AI + ++ S+
Sbjct: 620 YATRQRIEGYQFGPDTVWQQEFEEMFPYEETTDQLNAIEDTKHDMESRR 668
>gi|330897622|gb|EGH29041.1| transcription-repair coupling factor [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 267
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 91 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 149
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 150 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 197
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I+ + ++ +
Sbjct: 198 AFAD---PKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKP 237
>gi|251792001|ref|YP_003006721.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
NJ8700]
gi|247533388|gb|ACS96634.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
NJ8700]
Length = 1151
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + E G+K E+ ++ + L VPV I
Sbjct: 478 ELQIGQPVVHLDHGVGRYGGLVSLENGGIKAEYLLLNYAN-DSKLYVPVASLHLISRYVG 536
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E K S I +V +L +Q E
Sbjct: 537 GADETA----------------PLHKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQ 580
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + AIN + +++ +
Sbjct: 581 KGFAFRYDREEFQQFTATFPFEETHDQLMAINAVISDMTLPKA 623
>gi|229819510|ref|YP_002881036.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
12333]
gi|229565423|gb|ACQ79274.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
12333]
Length = 1205
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ +++ RTG+H+V+ HGVG E+ ++ + A ++ + ++
Sbjct: 502 LAPKRRNVVDPLALRTGDHVVHEQHGVGRFVELVQRSIGSGP-----AAATREYLVIEYA 556
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
K G R +++ K G++ M + + E++R
Sbjct: 557 ASKRGQPGDRLYVPTDALDQVTKYTGGESPSLNKMGGSDWAKTKGRARKAVREIAGELIR 616
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++S ++ + + + + I+ ++ ++
Sbjct: 617 LYSARMATQGFAFSPDTPWQR---ELEDAFPHIETPDQVVTIDEVKADMEKSVP 667
>gi|224534394|ref|ZP_03674972.1| putative transcription factor [Borrelia spielmanii A14S]
gi|224514496|gb|EEF84812.1| putative transcription factor [Borrelia spielmanii A14S]
Length = 162
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L
Sbjct: 3 FLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRALV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE +++ + + D++ A++ + L++ +Q E +
Sbjct: 63 SREKVEEVFDVIKKFEGQIDS--KKIKDGGHEFYKKSDILDTAKLYKFLYKKSTQKELPF 120
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ + EI+ IS EA I+ L
Sbjct: 121 YEKRILNDFELILEHEISLALQISFEEAKKKIKNILFDGKK 161
>gi|260885484|ref|ZP_05735117.2| transcription-repair coupling factor [Prevotella tannerae ATCC
51259]
gi|260852468|gb|EEX72337.1| transcription-repair coupling factor [Prevotella tannerae ATCC
51259]
Length = 1143
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 15/166 (9%), Positives = 47/166 (28%), Gaps = 15/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
F G++IV+ HGVG + A + + + + V + +
Sbjct: 454 NELLQFHPGDYIVHLDHGVGRFAGLVRVPAADGSQQEMIKLTYQHDDIVLVSIHALHKLS 513
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
K E G + + ++ + +++ + +
Sbjct: 514 KYKGRE------------GTPPHLSRLGTGAWEKMKDRTKKKIKDIARNLIKLYSQRKEE 561
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + ++ + + ++ ++ S
Sbjct: 562 KGYAFSADSFLQ---QELEASFTYEDTPDQLKVTQEVKADMESLRP 604
>gi|238894149|ref|YP_002918883.1| transcription-repair coupling factor [Klebsiella pneumoniae
NTUH-K2044]
gi|238546465|dbj|BAH62816.1| transcription-repair ATP-dependent coupling factor [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 1148
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WTRARQKAAEKVRDVAAELLDIYAQRAAKAGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|194364979|ref|YP_002027589.1| transcription-repair coupling factor [Stenotrophomonas maltophilia
R551-3]
gi|194347783|gb|ACF50906.1| transcription-repair coupling factor [Stenotrophomonas maltophilia
R551-3]
Length = 1154
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + +V GM EF I + K L VPV + I
Sbjct: 484 ELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E +K + +V +L ++ +
Sbjct: 543 ASAETAP--LHSLGG--------------EQWSKAKRKAAEKVRDVAAELLEIQARRQAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +LSS
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLSSSQP 629
>gi|206576037|ref|YP_002239264.1| transcription-repair coupling factor [Klebsiella pneumoniae 342]
gi|206565095|gb|ACI06871.1| transcription-repair coupling factor [Klebsiella pneumoniae 342]
Length = 1148
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WTRARQKAAEKVRDVAAELLDIYAQRAAKAGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|197284762|ref|YP_002150634.1| transcription-repair coupling factor [Proteus mirabilis HI4320]
gi|194682249|emb|CAR41979.1| transcription-repair coupling factor [Proteus mirabilis HI4320]
Length = 1151
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ ++++ L VPV I
Sbjct: 475 ELSPGQPVVHLQHGVGRYQGMTTLEAGGVKAEYLILSYAG-DDKLYVPVSSLHLISRYSG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A + + +V +L +Q
Sbjct: 534 GADE--NAPLHKLGGDA--------------WTRARQKAAEKVRDVAAELLDVYAQRAVK 577
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + + + AIN + ++
Sbjct: 578 SGFAFKLDKEQYHTFRQSFPFETTPDQEMAINAVLSDMCQA 618
>gi|320527116|ref|ZP_08028303.1| transcription-repair coupling factor [Solobacterium moorei F0204]
gi|320132444|gb|EFW24987.1| transcription-repair coupling factor [Solobacterium moorei F0204]
Length = 1130
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ +GVG I+ +E+ +K +F I + L VP+ + + RK
Sbjct: 457 DELQPGDYVVHAQYGVGQYICIENREIQKVKRDFLKI-IYRGNTELLVPLEQFHLV--RK 513
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V L + ++ ++ S ++ +
Sbjct: 514 FVSREGVVPKLNKLGSGD----------WEKTKKRLQSNVEDIAERLLSLYANREQHIGF 563
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ + + + + +A+ I+ ++ S
Sbjct: 564 AFSKDNEMT---KKFENSFSFDLTPDQEKAVAEIKKDMESNKP 603
>gi|239787601|emb|CAX84069.1| Transcription-repair coupling factor [uncultured bacterium]
Length = 1178
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 26/181 (14%)
Query: 2 TFQQKRDAM--------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
T ++K D + + +V+ HGVG + EV G+K +F +I +
Sbjct: 489 TKRRKTDPRYLDQLLAGFADLKELDPVVHADHGVGRYGGLHSLEVGGIKNDFLLIHYAGS 548
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
L PV + + +++ + K + K L
Sbjct: 549 D-KLYAPVENLDRVTKYVGGDEVPLDKLGGVKWEKTKEKAKK--------------KILE 593
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+VR + +S L + + AI + +++
Sbjct: 594 MAEELVRLQAVRQANQGFGFSTPDPL---LQEFAAGFPFEETPDQTAAIEAVLEDMAKSR 650
Query: 174 S 174
Sbjct: 651 P 651
>gi|119386518|ref|YP_917573.1| transcription-repair coupling factor [Paracoccus denitrificans
PD1222]
gi|119377113|gb|ABL71877.1| transcription-repair coupling factor [Paracoccus denitrificans
PD1222]
Length = 1154
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 23/177 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ G+ +V+ HG+G T ++ + G+ + V L
Sbjct: 467 AKRRRKAENFLRDTTTLTPGDLVVHVEHGIGRYTGLETVKALGVPHDC-VALEYAGGDRL 525
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + E L + G A W R +I + +
Sbjct: 526 YLPVENIELLSRY-----GHEEGLLDKLGGGA------WQARKARLKERIK----LIADK 570
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R +P + + + AI + +L++
Sbjct: 571 LMRVAAERMLRPAPVLEPEH---HEIESFAARFPYAETEDQASAIADVAEDLAAGRP 624
>gi|325293164|ref|YP_004279028.1| transcription-repair coupling factor [Agrobacterium sp. H13-3]
gi|325061017|gb|ADY64708.1| transcription-repair coupling factor [Agrobacterium sp. H13-3]
Length = 1165
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 21/177 (11%)
Query: 2 TFQQKR----DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++KR A G G +V+ HG+G ++ E AG + + L
Sbjct: 482 SKRRKRGADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYAD-DAKL 540
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + E L + G A Q AK+ L E
Sbjct: 541 FLPVENIDLLSRY---GSDAAEATLDKLGGGA----------WQMRKAKLKKRLLDMADE 587
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + + + + + + AI+ + +L +
Sbjct: 588 LIRIAAARLVRHAPALI---APDGLYDEFAARFPYDETEDQLNAIDAVRDDLGAGRP 641
>gi|261884253|ref|ZP_06008292.1| transcription-repair coupling factor [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 217
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ +G+G ++ V G K EF VI ++ L +PV I
Sbjct: 57 DELKIGDFVVHSDYGIGKFLGLELITVLGSKKEFVVI-AYQNNDKLLLPVEHLNMIDRYI 115
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V R + AKI + + + ++ E
Sbjct: 116 AGSGAVVSV----------------DRLGKASFAKIKEKVREKLFVIANKIIALAAKREL 159
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R +S + + + + +A+N I+ +L S +
Sbjct: 160 IEGIRLNADSQYAKFKSSAGFIYADDQEKAVNDIQSHLKSGRA 202
>gi|227357767|ref|ZP_03842116.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906]
gi|227162096|gb|EEI47110.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906]
Length = 1151
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ ++++ L VPV I
Sbjct: 475 ELSPGQPVVHLQHGVGRYQGMTTLEAGGVKAEYLILSYAG-DDKLYVPVSSLHLISRYSG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A + + +V +L +Q
Sbjct: 534 GADE--NAPLHKLGGDA--------------WTRARQKAAEKVRDVAAELLDVYAQRAVK 577
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + + + AIN + ++
Sbjct: 578 SGFAFKLDKEQYHTFRQSFPFETTPDQEMAINAVLSDMCQA 618
>gi|4154037|emb|CAA22685.1| putative transcriptional regulator [Mycobacterium leprae]
Length = 94
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ G+ +VYP HG + I+ + + G + E+ V+ + + ++VP A +G+R +
Sbjct: 3 FKVGDTVVYPHHGAALVEAIETRTINGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDA 105
+++ +++R + T WSRR +
Sbjct: 63 GQEGLDQVFQVLRAPHTEEPTNWSRRYKANLE 94
>gi|312134559|ref|YP_004001897.1| transcription-repair coupling factor [Caldicellulosiruptor
owensensis OL]
gi|311774610|gb|ADQ04097.1| transcription-repair coupling factor [Caldicellulosiruptor
owensensis OL]
Length = 1141
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 61/181 (33%), Gaps = 24/181 (13%)
Query: 1 MTFQQKRDAMRQGF------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + + F + G+ +V+ +G+G ++ V G E +V +
Sbjct: 463 IDTKKRVKSKKDAFYTIEDLKPGDFVVHRTYGIGKFLGFEKITVEGTTKE-YVKLEYANS 521
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VP I + + S+ Q K+ +
Sbjct: 522 SYLYVPTTNLDMIEKYIGT------------DDVQPKLSKLGSKEWQRQKQKVKK----S 565
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
+ V +DL ++ + + ++ + + + + +AI I+ ++ S+
Sbjct: 566 LEVVAKDLVELYAKRQLGQGFKFSKDTVWQKEFEEKFPYTETEGQLQAIEEIKRDMESEK 625
Query: 174 S 174
Sbjct: 626 P 626
>gi|256419455|ref|YP_003120108.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
2588]
gi|256034363|gb|ACU57907.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
2588]
Length = 1126
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 18/173 (10%)
Query: 4 QQKRDAMR--QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ K M+ + + G+ + + HGVG + +++ EV G E I K+ L V +
Sbjct: 431 KNKAITMKTLRELQAGDFVTHIDHGVGVYSGLQKIEVGGKMQEAIRI-IYKNNDLLYVNI 489
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
I E G + S + K + ++++
Sbjct: 490 NSLHKISKYSGKE------------GVEPRVNKLGSDAWDKLKEKAKTQVKDIAKDLIQL 537
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Q +S ++ + ++ + +A ++ ++ S +
Sbjct: 538 YAARKAQTGFPHSPDTYLQT---ELEASFLYEDTPDQSKATADVKRDMQSPAP 587
>gi|254522423|ref|ZP_05134478.1| transcription-repair coupling factor [Stenotrophomonas sp. SKA14]
gi|219720014|gb|EED38539.1| transcription-repair coupling factor [Stenotrophomonas sp. SKA14]
Length = 1154
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + +V GM EF I + K L VPV + I
Sbjct: 484 ELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E +K + +V +L ++ +
Sbjct: 543 ASAETAP--LHSLGG--------------EQWSKAKRKAAEKVRDVAAELLEIQARRQAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L+S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLASSQP 629
>gi|190573435|ref|YP_001971280.1| putative transcription-repair coupling factor [Stenotrophomonas
maltophilia K279a]
gi|190011357|emb|CAQ44972.1| putative transcription-repair coupling factor [Stenotrophomonas
maltophilia K279a]
Length = 1154
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + +V GM EF I + K L VPV + I
Sbjct: 484 ELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E +K + +V +L ++ +
Sbjct: 543 ASAETAP--LHSLGG--------------EQWSKAKRKAAEKVRDVAAELLEIQARRQAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L+S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLASSQP 629
>gi|317057762|ref|YP_004106229.1| transcription-repair coupling factor [Ruminococcus albus 7]
gi|315450031|gb|ADU23595.1| transcription-repair coupling factor [Ruminococcus albus 7]
Length = 1156
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 23/182 (12%)
Query: 1 MTFQQKRDAMRQGFRT--------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
++ ++K+ + G G+ +V+ +G+G IK E +G+K ++ I++
Sbjct: 467 LSSKRKKPKHKAGEEIKALSDIHSGDLVVHSMYGIGKFMGIKNIETSGVKKDYITISYAG 526
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VPV + + R KL S K+ +
Sbjct: 527 TDV-LYVPVTQLDLVSRYVGPGEDGNIRLNKL-----------NSTEWTRTRNKVRAAVK 574
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+ + + S+ ++ + + AIN I+ ++ +
Sbjct: 575 DMAEELTKLYAQRQMAKGYSFEPDDDWQR---DFEERFDYQETDDQLRAINEIKGDMEKQ 631
Query: 173 SS 174
+
Sbjct: 632 TP 633
>gi|218440658|ref|YP_002378987.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
gi|218173386|gb|ACK72119.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
Length = 1168
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/176 (11%), Positives = 62/176 (35%), Gaps = 25/176 (14%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+++R A +Q R G+++V+ HG+G +++ E E+ +I + L+
Sbjct: 489 RKRRRAASKQVNLDKLRPGDYVVHRNHGIGKFIKLEILE----SREYILIQYA--DGTLR 542
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+P + + + M + ++ K+ ++
Sbjct: 543 IPSDSLDSLSRYRHTS------------NTPPQLDKMTGKTWEQTKQKVRKTVKKLAVDL 590
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Q +Y + ++ + + + +AI ++ ++ ++
Sbjct: 591 INLYAKRAQQEGFAYPDDSPWQ---QELEDSFPYQPTPDQIKAIQEVKRDMMNERP 643
>gi|307244035|ref|ZP_07526154.1| transcription-repair coupling factor [Peptostreptococcus stomatis
DSM 17678]
gi|306492559|gb|EFM64593.1| transcription-repair coupling factor [Peptostreptococcus stomatis
DSM 17678]
Length = 1134
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ GVG T I++ V +K ++ I + L VP+ + +
Sbjct: 492 DLKVGDYVVHENSGVGKYTGIEQITVNNIKRDYLKI-VYQGGDNLYVPIDQMDKVQKYIG 550
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ V+ + S + ++ E++ + +++
Sbjct: 551 GDVERVK------------LNKLGSHDWSKAKHRVKKEIEDMTKELIDLYAKREARKGYK 598
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ +++ + + + +AI + ++ S +
Sbjct: 599 FSKDTIWQ---GEFEEKFPFQETDDQLKAIKDTKKDMESSKA 637
>gi|172040264|ref|YP_001799978.1| transcription-repair coupling factor [Corynebacterium urealyticum
DSM 7109]
gi|171851568|emb|CAQ04544.1| transcription-repair coupling factor [Corynebacterium urealyticum
DSM 7109]
Length = 1249
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/177 (11%), Positives = 57/177 (32%), Gaps = 16/177 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG----MKLEFFVIAFDKDKMCL 57
+++ G+ +V+ +HG+G ++ E+ V + E+ V L
Sbjct: 539 PAKRRNRVDPLALEPGDLVVHDSHGIGKFVKMTERTVGKGADASRREYLV---------L 589
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+ K G + ++ + V G+ M + K E
Sbjct: 590 EYAPSKRGGPGDQLYVPMDQLDLLSRYVGGEKPALSKMGGADWKNTKRKARKAVREIAGE 649
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+V+ + + P +++ ++ + + + AI ++ ++
Sbjct: 650 LVQLYAQRQAAPGYAFAPDSPWQREME---EAFPFTETEDQFNAIEAVKSDMEKPVP 703
>gi|152969666|ref|YP_001334775.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150954515|gb|ABR76545.1| transcription-repair ATP-dependent coupling factor [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
Length = 1152
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 480 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 538
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 539 GAEE--NAPLHKLGGDA----------WTRARQKAAEKVRDVAAELLDIYAQRAAKAGFA 586
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 587 FKHDR---EQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLA 625
>gi|298384566|ref|ZP_06994126.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14]
gi|298262845|gb|EFI05709.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14]
Length = 1127
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 54/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HG+G + + E + F +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVF-QNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K G+A + + ++ + + ++++ + +
Sbjct: 490 YKG------------KDGEAPRLNKLGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + ++ + +A ++ ++ S
Sbjct: 538 GFSYSPDSFLQR---ELEASFIYEDTPDQSKATMEVKADMESDRP 579
>gi|219872109|ref|YP_002476484.1| transcription-repair coupling factor [Haemophilus parasuis SH0165]
gi|219692313|gb|ACL33536.1| transcription-repair coupling factor [Haemophilus parasuis SH0165]
Length = 1217
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + L VPV I
Sbjct: 550 ELKIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYAN-DAKLYVPVASLHLISRYIG 608
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + ++Q +
Sbjct: 609 GTDENAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKREAQKGFA 656
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A + + + AIN + ++ +
Sbjct: 657 FEYDR---DAFVQFSNTFPFEETEDQKTAINAVISDMCLPKA 695
>gi|261856564|ref|YP_003263847.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
c2]
gi|261837033|gb|ACX96800.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
c2]
Length = 1159
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G +V+ HGVG + E+ G+ EF ++ + L VPV I
Sbjct: 481 NNLNELAEGAPVVHETHGVGRFGGLVTLEMNGLAQEFLILYYAG-DDKLYVPVSSLELIS 539
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
L + K + +V +L ++
Sbjct: 540 RYTGGSEETAP--LHRLGSGQ--------------WEKARKRAAEQVRDVAAELLDIHAR 583
Query: 129 PEKSYSERQL-YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q E R A + + AI+ + +++
Sbjct: 584 RAAKRGQAQPTPEEEYARFANNFAFETTPDQQLAIDSVLADMARTQP 630
>gi|257068130|ref|YP_003154385.1| CarD-like transcriptional regulator [Brachybacterium faecium DSM
4810]
gi|256558948|gb|ACU84795.1| CarD-like transcriptional regulator [Brachybacterium faecium DSM
4810]
Length = 179
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 6/166 (3%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
+ G+ + +P HG I + V G + E+ + D+M + VP +G+R L
Sbjct: 14 KVGDVLTHPVHGPVRIVSTCTRTVRGTEREYVDLEVIGDEMRISVPSDGRDVVGLRTLLA 73
Query: 75 AHFVERALKLV--RGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + + +A K+ W+ R + ++ +G L EV+R + R S
Sbjct: 74 EPEIVEMITQLGAPIEAPGKKASWAHRIKSLQMQLQTGRLTDRVEVIRAIVRDSGGTPSS 133
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLI----EVNLSSKSS 174
+ER L + A++ + EIA S+S EA L+ E L + ++
Sbjct: 134 LAERNLLKQAIDPLASEIAIARSVSREEAHELLQSTAENALEADAA 179
>gi|294790717|ref|ZP_06755875.1| transcription-repair coupling factor [Scardovia inopinata F0304]
gi|294458614|gb|EFG26967.1| transcription-repair coupling factor [Scardovia inopinata F0304]
Length = 1227
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 15/185 (8%), Positives = 55/185 (29%), Gaps = 15/185 (8%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV--AGMKLEFFV----------IA 49
++++ + G+++V+ HG+G E+ ++ V V
Sbjct: 506 PPRRRKAIDLVELKKGDYVVHEQHGIGRFVEMVQRPVSPGRSHGRTLVASASAGAGQHTQ 565
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
++ + ++ K R ++ K + + + A+
Sbjct: 566 SMREYLVIEYAPSKRGAPPDRLYIPTDQLDLISKYIGAEEPKLNKLGGSDWAATKARAKK 625
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
++V+ ++S ++ + + + + I+ ++ ++
Sbjct: 626 RVKEIAQDLVKLYAARQRTAGFAFSPDTPWQ---HELEEAFPYQETPDQLTTIDEVKADM 682
Query: 170 SSKSS 174
Sbjct: 683 EKPIP 687
>gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
11293]
gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
11293]
Length = 1128
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ +G+G I AG + ++ + + +M + +P+ + +
Sbjct: 463 ELNPGDLVVHVNYGIGRFLGIDRITAAGTERDYIKLEYADQEM-IFIPIEQVNLVQRY-- 519
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + GK + A++ +++ + S
Sbjct: 520 IGQEGQSPRLDKLGGKG----------WESRKARVRKSVEDLADRLIKLYAKRKEARGFS 569
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E ++ E + + I ++ ++ S
Sbjct: 570 FPEDTDWQV---EFEAEFPYQETADQLRCIEEVKADMESDRP 608
>gi|221217751|ref|ZP_03589219.1| putative transcription factor [Borrelia burgdorferi 72a]
gi|225550083|ref|ZP_03771043.1| putative transcription factor [Borrelia burgdorferi 118a]
gi|221192428|gb|EEE18647.1| putative transcription factor [Borrelia burgdorferi 72a]
gi|225369195|gb|EEG98648.1| putative transcription factor [Borrelia burgdorferi 118a]
Length = 162
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L
Sbjct: 3 FLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRALV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE +++ + + D++ A++ + L++ +Q E +
Sbjct: 63 SREKVEEVFDVIKEFEGQIDS--KKIKDGGYEFYKKSDILDTAKLYKFLYKKSTQKELPF 120
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ + EI+ IS EA I+ L
Sbjct: 121 YEKRILNDFELILEHEISLALQISFEEAKKKIKNILVDNKK 161
>gi|330954492|gb|EGH54752.1| transcription-repair coupling factor [Pseudomonas syringae Cit 7]
Length = 912
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 240 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 298
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 299 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 346
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I+ + ++ +
Sbjct: 347 AFAD---PKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKP 386
>gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM
5427]
gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM
5427]
Length = 1179
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+++V+ HG+G +++ + G+ + I + + + L V + +
Sbjct: 504 KIQSFLELAPGDYVVHEQHGIGVFKGVEQLVIEGISRDNLKIEYADNNV-LYVNINQMDM 562
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ SE GKA + ++ AK+ E+V+ +
Sbjct: 563 VQKYVGSE------------GKAPKLSKLGGSEWKKSKAKVKGAIQNIAKELVKLYSQRQ 610
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y E +++ M + + EAI ++ ++ S
Sbjct: 611 YSRGFCYEEDTIWQKEFEAM---FPYEETGDQLEAIEDVKKDMESDK 654
>gi|120610265|ref|YP_969943.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1]
gi|120588729|gb|ABM32169.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1]
Length = 1163
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/190 (13%), Positives = 59/190 (31%), Gaps = 32/190 (16%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------ 44
T ++++ + G+ +V+ AHG+G + +V +
Sbjct: 457 TTRRRKKQEQVSDVEALIKDLSELTLGDPVVHSAHGIGRYRGLIHMDVGQKNPDGTPAMQ 516
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ DK L VPV + I A + S + ++
Sbjct: 517 EFLHLEYADKAVLYVPVSQLQLISRYTGVSAD------------EAPLHKLGSGQWEKAK 564
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
K + AE++ R ++ ++ + + + + + AI+
Sbjct: 565 RKAAEQVRDSAAELLNIYARRAAREGHAF---RYSPQDYEQFANDFGFEETADQNAAIHA 621
Query: 165 IEVNLSSKSS 174
+ ++ S
Sbjct: 622 VIQDMISPRP 631
>gi|326316443|ref|YP_004234115.1| transcription-repair coupling factor [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323373279|gb|ADX45548.1| transcription-repair coupling factor [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 1163
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/190 (13%), Positives = 59/190 (31%), Gaps = 32/190 (16%)
Query: 2 TFQQKRDAMR-----------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------ 44
T ++++ + G+ +V+ AHG+G + +V +
Sbjct: 457 TTRRRKKQEQVSDVEALIKDLSELTLGDPVVHSAHGIGRYRGLIHMDVGQKNPDGTPAMQ 516
Query: 45 FFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYD 104
F+ DK L VPV + I A + S + ++
Sbjct: 517 EFLHLEYADKAVLYVPVSQLQLISRYTGVSAD------------EAPLHKLGSGQWEKAK 564
Query: 105 AKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
K + AE++ R ++ ++ + + + + + AI+
Sbjct: 565 RKAAEQVRDSAAELLNIYARRAAREGHAF---RYSPQDYEQFANDFGFEETADQNAAIHA 621
Query: 165 IEVNLSSKSS 174
+ ++ S
Sbjct: 622 VIQDMISPRP 631
>gi|111115179|ref|YP_709797.1| transcription factor, putative [Borrelia afzelii PKo]
gi|216263817|ref|ZP_03435811.1| putative transcription factor [Borrelia afzelii ACA-1]
gi|110890453|gb|ABH01621.1| transcription factor, putative [Borrelia afzelii PKo]
gi|215979861|gb|EEC20683.1| putative transcription factor [Borrelia afzelii ACA-1]
Length = 162
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L
Sbjct: 3 FLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRALV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE +++ + + D++ A++ + L++ +Q E +
Sbjct: 63 SREKVEEVFDVIKKFEGQIDS--KKIKDGGHEFYKKSDILDTAKLYKFLYKKSTQKELPF 120
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ + EI+ IS EA I+ L
Sbjct: 121 YEKRILNDFELILEHEISLALQISFEEAKKKIKNILVDSKK 161
>gi|291515893|emb|CBK65103.1| transcription-repair coupling factor (mfd) [Alistipes shahii WAL
8301]
Length = 1112
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 15/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A R G+++V+ HGVG + + +++ + KD L V V I
Sbjct: 426 AELNQLRPGDYVVHIDHGVGRFDGLVKIAAGDGRMQEAIKLVYKDGDVLFVNVHSLHRIS 485
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
K G+ + + Q+ E++ + +
Sbjct: 486 RYKSG------------DGEPPKVYKLGNGAWQKLKNATKKAVKDISRELIALYAKRKAS 533
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + A I+ ++ S
Sbjct: 534 KGYAFSHDSYLQ---HELEASFRWEDTPDQQSATAAIKKDMESDQP 576
>gi|170726164|ref|YP_001760190.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
gi|169811511|gb|ACA86095.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
Length = 1157
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV ++ + G+ E+ + + L VPV I +
Sbjct: 484 ELKVGQPIVHLDHGVAHYQGLETLDTGGLVAEYLKLEYAGGD-KLYVPVSSLHLISRYSV 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ E AK + I +V +L ++ +
Sbjct: 543 GPDEEAQL----------------NKLGNESWAKAKKKAIEKIRDVAVELLDVYARRQAR 586
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + ++ + +IN + ++SS
Sbjct: 587 PGDACHIDQEEYALFSNSFPFEETVDQETSINAVLTDMSSP 627
>gi|325282867|ref|YP_004255408.1| transcription factor CarD [Deinococcus proteolyticus MRP]
gi|324314676|gb|ADY25791.1| transcription factor CarD [Deinococcus proteolyticus MRP]
Length = 1054
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 60/169 (35%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K G TG+++++P HG+G ++ + V G+ ++ + L VP+ +
Sbjct: 371 KPVTDALGLHTGDYLIHPEHGIGQFLGLETRTVLGVTRDYL-NLEYRGGSRLSVPIEQLS 429
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + + + + RAQ+ ++ + L + R +
Sbjct: 430 LLRRHPGTTDDPP-----RLSSFDKKDWSKAKARAQKNAEEVAARLL--VQYAARQVTPG 482
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P + + Q+ ++ A + + A+ +L +
Sbjct: 483 TAFPPQPEWDEQIEQN--------FAYELTADQRTALKETLRDLEKANP 523
>gi|323496023|ref|ZP_08101086.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
gi|323318914|gb|EGA71862.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
Length = 1154
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMTTE-YVTLEYQNDAKLYVPVASLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEESAP--LHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGYKFELDRGQYATFKAGFPFEETDDQKIAINAVMSDMCQAKA 624
>gi|257464856|ref|ZP_05629227.1| transcription-repair coupling factor [Actinobacillus minor 202]
gi|257450516|gb|EEV24559.1| transcription-repair coupling factor [Actinobacillus minor 202]
Length = 1151
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYAN-DAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + ++Q +
Sbjct: 541 GTDENAP------------LHKLGSEVWAKTRQKAAEKIRDVAAELLDVYAKREAQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A + + + AIN + ++ +
Sbjct: 589 FEYDR---DAFVQFSNTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|27379712|ref|NP_771241.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
110]
gi|27352864|dbj|BAC49866.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
110]
Length = 1172
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ HG+G ++ +VAG + + L +PV +
Sbjct: 495 SEVTSLAAGDIVVHVDHGIGRFVGLQTLDVAGAPHDCL-ELHYAAETKLFLPVENIELLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ R+ + W R + + I E+ +L + +
Sbjct: 554 RYGSDQTTV---------ELDRLGGSGWQTRKAKLKNR--------IREIADELIKIAAA 596
Query: 129 PEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + AI +L
Sbjct: 597 RHLHEAPKLPVQPGLYDEFCARFPYDETEDQLGAIESTLKDLELGRP 643
>gi|325281936|ref|YP_004254478.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
20712]
gi|324313745|gb|ADY34298.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
20712]
Length = 1104
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 16/164 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+++V+ HG+G + + G + E + K+ L V + I
Sbjct: 415 ELQNLHPGDYVVHIDHGIGRFGGLVKINNDGNEQEAIRL-VYKNNSELYVGLHSLHKISK 473
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K V + + G A + K S E++ R +
Sbjct: 474 YKG--KDGVPPVVNKLGGDA----------WNKLKQKTKSRVKDIARELIALYARRKKEA 521
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++S+ + + + + +AI ++ ++
Sbjct: 522 AFAFSKDSYLQEEMEV---SFMYDETPDQIKAIEAVKADMEKPQ 562
>gi|118474341|ref|YP_891912.1| transcription-repair coupling factor [Campylobacter fetus subsp.
fetus 82-40]
gi|118413567|gb|ABK81987.1| transcription-repair coupling factor [Campylobacter fetus subsp.
fetus 82-40]
Length = 985
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 17/162 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+TG+ +V+ +G+G ++ V G K EF VI ++ L +PV I
Sbjct: 348 DELKTGDFVVHSDYGIGKFLGLELITVLGSKKEFVVI-AYQNNDKLLLPVEHLNMIDRYI 406
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V R + AKI + + + ++ E
Sbjct: 407 AGSGAVVSV----------------DRLGKASFAKIKEKVREKLFVIANKIIALAAKREL 450
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
R +S + + + + +A+N I+ +L S
Sbjct: 451 IEGIRLNADSQYAKFKSSAGFIYTDDQEKAVNDIQNHLKSGR 492
>gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205]
Length = 1183
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 55/175 (31%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G ++++ + ++ V+ + L+V
Sbjct: 476 RRRKAASRTVDPNKMRPGDFVVHRNHGIGKFLKLEKLAIGSEARDYLVVQYA--DGLLRV 533
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + M + + ++V
Sbjct: 534 AADQLGSLGRYRATS------------DSPPDLNRMGGTAWNKAKERARKAVRKVALDLV 581
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ N + + + +AI ++ ++
Sbjct: 582 KLYAERHKAPGFAFPVDGPWQ---NELEDSFPYEPTPDQVKAIADVKRDMEQPQP 633
>gi|255325397|ref|ZP_05366501.1| transcription-repair coupling factor [Corynebacterium
tuberculostearicum SK141]
gi|255297483|gb|EET76796.1| transcription-repair coupling factor [Corynebacterium
tuberculostearicum SK141]
Length = 1212
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 59/182 (32%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFD-----K 52
+++ + G+ +V+ HG+G ++ E+ + E+ V+ + +
Sbjct: 496 PAKRRNKVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSRREYIVLEYAPSKRGQ 555
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + G++ M + K +
Sbjct: 556 PADQLWVPMDSLDLLSKYTG--------------GESPHLSKMGGSDWKNTKKKARAAVR 601
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P +S +++ + V + + AI+ ++ ++ S
Sbjct: 602 EIAGELVELYAKRQAAPGHQFSPDNPWQAEME---DNFPFVETEDQMLAIDAVKHDMEST 658
Query: 173 SS 174
Sbjct: 659 VP 660
>gi|325663159|ref|ZP_08151609.1| hypothetical protein HMPREF0490_02350 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470613|gb|EGC73843.1| hypothetical protein HMPREF0490_02350 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 177
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 9/176 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKE---QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
++ G+ +V G+ IT+I +V K + ++ DKM + VPV +
Sbjct: 1 MYQVGDCVVKENTGLCRITDIVHLDGMDVDRNKKYYLLVPHSDDKMKIYVPVDSIA-SNL 59
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RK E + ++ + V +R Q+Y I S D +++ ++ +
Sbjct: 60 RKAIECNEAWSVIENITKIDAVHIENEKQREQKYKEAIKSCDPEQWISIIKTMYFRKQKR 119
Query: 130 EKS-----YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
+ + ++ A + E+A E E LI + K K EKS
Sbjct: 120 NIQGKKNAAMDERYFKLAEKYLYSELAYAIGKDESEMCQLIADTIKKKDMKAEKSA 175
>gi|167855057|ref|ZP_02477830.1| transcription-repair coupling factor [Haemophilus parasuis 29755]
gi|167853795|gb|EDS25036.1| transcription-repair coupling factor [Haemophilus parasuis 29755]
Length = 1149
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYAN-DAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + ++Q +
Sbjct: 541 GTDENAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKREAQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A + + + AIN + ++ +
Sbjct: 589 FEYDR---DAFVQFSNTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii
OhILAs]
gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii
OhILAs]
Length = 1174
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 59/176 (33%), Gaps = 19/176 (10%)
Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
T + K + + F + G+++V+ HG+G I+E +V G+K ++ I + L
Sbjct: 487 TNKTKDASPIKSFIDLKVGDYVVHEGHGIGKYIGIEELKVEGVKKDYLKI-RYSGEGFLY 545
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VP + I S + + K+ E+
Sbjct: 546 VPTDQMDLIQKYIGS------------DDAPPKLNKLGGSEWAKTKTKVKKAIEDMAGEL 593
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + ++S ++ + + + I ++ ++ + +
Sbjct: 594 IKLYAEREKTKGHAFSPDSDWQKQFEEL---FPYEETPDQLRCIEEVKQDMEKERA 646
>gi|157165294|ref|YP_001467043.1| transcription-repair coupling factor [Campylobacter concisus 13826]
gi|112800411|gb|EAT97755.1| transcription-repair coupling factor [Campylobacter concisus 13826]
Length = 981
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 18/170 (10%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
++ + + +++V+ +G+G +++ +V G EF VI ++ L +PV
Sbjct: 336 KRSSLVVDELKVNDYVVHEDYGIGRFLGLEKIKVLGATKEFVVI-AYQNDDKLLLPVEHL 394
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I + L + + AKI + + +
Sbjct: 395 NLIDRY--IAQNGSMAVLDRLG--------------KANFAKIKEKVREKLFAIASKIVA 438
Query: 125 TDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ E + Q + + V++ + + +A+N I+ L S
Sbjct: 439 MAAKRELIAGKILQKEDISYLNFVQDAGFSYTSDQQKAVNDIKDELKSGK 488
>gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
Length = 1184
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 17/175 (9%), Positives = 56/175 (32%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+++V+ HG+G ++++ ++G ++ V+ + L+V
Sbjct: 477 RRRKAASRTVDPNKMRPGDYVVHRNHGIGRFQKLEKLAISGEVRDYLVVQYA--DGLLRV 534
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + M + + + ++V
Sbjct: 535 AADQLGSLGR------------FRANSDTPPQLSKMGGSAWVKAKERASKAVRKVALDLV 582
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++ + + + +A ++ ++
Sbjct: 583 KLYAERHQAPGFAFPGDGPWQ---EELEDSFPYEPTPDQLKATADVKRDMEQPQP 634
>gi|254493915|ref|ZP_05107086.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
[Neisseria gonorrhoeae 1291]
gi|226512955|gb|EEH62300.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
[Neisseria gonorrhoeae 1291]
Length = 739
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G T + ++ G E ++ + + L VPV + I
Sbjct: 64 DLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYAG-EAQLYVPVSQLHLISR 122
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S AL + A K + A + +L+ +
Sbjct: 123 Y--SGQAHESVALHKLGSGAWNKAKR-----------KAAEKARDTAAELLNLYAQRAAQ 169
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E ES + + AI + +L+
Sbjct: 170 SGHKFEIN--ESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 212
>gi|163868353|ref|YP_001609562.1| transcription repair coupling factor [Bartonella tribocorum CIP
105476]
gi|161018009|emb|CAK01567.1| transcription repair coupling factor [Bartonella tribocorum CIP
105476]
Length = 1166
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 21/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K + +G+ +V+ HG+G +K G+ + I + + L
Sbjct: 480 PKRRKNNTNFISEISALNSGDIVVHIDHGIGQFVGLKTITTTGILRDCLEIKYAGGDL-L 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + E L + G A Q A++ L +
Sbjct: 539 FLPVENIELLSRY---GSEGTEVTLDKLGGVA----------WQARKARLKKHLLEMAGQ 585
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R ++ + + V + + AI+ + +L+S
Sbjct: 586 LIRIAAERVTRAAPALLPPVGL---FDEFVACFPYEETEDQINAIDAVLDDLASGKP 639
>gi|91977093|ref|YP_569752.1| transcription-repair coupling factor [Rhodopseudomonas palustris
BisB5]
gi|91683549|gb|ABE39851.1| transcription-repair coupling factor [Rhodopseudomonas palustris
BisB5]
Length = 1172
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ +G+ +V+ HG+G ++ EV G + V + L +PV +
Sbjct: 495 SEVTSLASGDIVVHVEHGIGRFIGLQTLEVGGAPHDC-VELHYANDTKLFLPVENIELLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ ++ + W R + +I + +V + H ++
Sbjct: 554 RYGSDGTNV---------ELDKLGGSGWQARKAKLKNRIRQ-IAGELIKVAAERHLREAP 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN +L
Sbjct: 604 KLQVEP------HLYDEFCARFPYDETEDQLAAINAALGDLGRGMP 643
>gi|283850616|ref|ZP_06367903.1| transcription-repair coupling factor [Desulfovibrio sp. FW1012B]
gi|283573859|gb|EFC21832.1| transcription-repair coupling factor [Desulfovibrio sp. FW1012B]
Length = 1150
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 45/169 (26%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K R G+ IV+ +GV T + V ++ ++ F L +P +
Sbjct: 473 KGLTSFDDIRPGDLIVHRDYGVATFEGLTRMTVDATGGDYLLLVFAD-DDKLYLPADRLG 531
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ K E G + + R + + A++V
Sbjct: 532 LMQRYKGPE------------GISPPLDRLGGARWKSVRERAKKAIERIAADLVEMYAYR 579
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + + +AI + ++
Sbjct: 580 QVAKGYAYGPTNEL---YLEFEATFGFEETPDQEKAIAEVLADMERPEP 625
>gi|288936122|ref|YP_003440181.1| transcription-repair coupling factor [Klebsiella variicola At-22]
gi|288890831|gb|ADC59149.1| transcription-repair coupling factor [Klebsiella variicola At-22]
Length = 1148
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDARLYVPVSSLHLISRYAG 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 535 GAEE--NAPLHKLGGDA----------WTRARQKAAEKVRDVAAELLDIYAQRAAKAGFA 582
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AIN + ++ +
Sbjct: 583 FKHDR---EQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLA 621
>gi|240950267|ref|ZP_04754546.1| transcription-repair coupling factor [Actinobacillus minor NM305]
gi|240295244|gb|EER46045.1| transcription-repair coupling factor [Actinobacillus minor NM305]
Length = 1150
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYAN-DAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GTDENAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A + + + AIN + ++ +
Sbjct: 589 FEYDR---DAFVQFSNTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|289679716|ref|ZP_06500606.1| transcription-repair coupling factor [Pseudomonas syringae pv.
syringae FF5]
Length = 228
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 25 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 83
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 84 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 131
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + + I+ + ++ +
Sbjct: 132 AFAD---PKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKP 171
>gi|255529938|ref|YP_003090310.1| transcription-repair coupling factor [Pedobacter heparinus DSM
2366]
gi|255342922|gb|ACU02248.1| transcription-repair coupling factor [Pedobacter heparinus DSM
2366]
Length = 1113
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ + G+ + + HG+G +++ EV G E + + + + L V + I
Sbjct: 433 ELRDLKPGDFVTHIDHGIGKYAGLEKVEVNGKTQEMIRLVYADNDL-LYVNINSLNRIAK 491
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
G A + + + ++++ SQ
Sbjct: 492 YSG------------KDGTAPKMNKLGTEAWDKLKKTTKKKVKDIARDLIKLYALRKSQV 539
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ E+ + ++ + +A + ++ ++ +
Sbjct: 540 GTAFAPDGYLET---ELEASFIYEDTPDQEKATSDVKKDMEAPHP 581
>gi|325681467|ref|ZP_08160993.1| CarD-like protein [Ruminococcus albus 8]
gi|324106957|gb|EGC01247.1| CarD-like protein [Ruminococcus albus 8]
Length = 164
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMK-LEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F TGE IVY + GV + EI + G + +++ + VPV + MRK
Sbjct: 1 MFDTGEIIVYGSSGVYRVAEIGGIAIKGCEGRDYYTLEPVFGSGTSYVPVDTG--VFMRK 58
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRR--AQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ A V + + + + S R + Y A + + D + +++ +
Sbjct: 59 VMTADEVNDLIDRIPAISGDGFSSTSPRLVKEHYSASMKTHDTDKMIGMIKQIWEKGEHK 118
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
+ S E+Q E A N + E + I E I + + +
Sbjct: 119 KLSRIEQQYMEQAENLINSEFSVALGIPREEVAGYIRARIGKNNGQ 164
>gi|57233929|ref|YP_181993.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
195]
gi|57224377|gb|AAW39434.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
195]
Length = 1148
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/160 (11%), Positives = 52/160 (32%), Gaps = 16/160 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
+ GE +V+ HGV + + GM E+ ++ + L VP + + S
Sbjct: 485 KPGEFVVHIDHGVALFSGVSHLNRDGMDKEYLILNYAGGD-KLYVPTDQMDRVNRFIGSG 543
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ + ++ Q K + E++ + +S
Sbjct: 544 ------------DEPPSLHRLGTQEWQRAKEKASESAEETARELLDIYAKRKMASGYPFS 591
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + + +A+ I+ ++ +
Sbjct: 592 TDTVWQQEME---ASFPYLETPDQLKALYDIKADMENPRP 628
>gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
Length = 1166
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 58/176 (32%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ +Q R G+ +V+ +HG+G E++ + ++ VI + + +
Sbjct: 481 RKRRKAISKQVDTNKLRPGDFVVHRSHGIGKFVELESLTINNETRDYLVIQYADGLLKV- 539
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
A +G + + M + K+ ++
Sbjct: 540 ----AADKVGSLSR---------FRTSGDQTPALHKMTGKAWDNTKNKVRKAIKKLAVDL 586
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ Q +Y ++ + + + +A+ ++ ++ S+
Sbjct: 587 LKLYAARSQQQGFAYPADMPWQEEME---DSFPYQATTDQLKAVQDVKRDMESERP 639
>gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans
ISDg]
gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans
ISDg]
Length = 1179
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ K+ G+++V+ HG+G I++ EV + ++ + L +
Sbjct: 491 SYEGKQIQSFTDLNIGDYVVHENHGLGIYRGIEKIEVDKVSKDYIKLE-YGGGGVLYILA 549
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
I + + + S + AK+ E+V
Sbjct: 550 TGLDVIQKYAGA------------DARKPKLNKLNSVEWKNTKAKVKGAVKEIAKELVEL 597
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ S+ E +++ M + + AI+ + ++ SK
Sbjct: 598 YATRQAKAGHSFCEDTVWQREFEEM---FPYEETDDQLRAIDDTKRDMESKK 646
>gi|68536576|ref|YP_251281.1| transcription-repair coupling factor [Corynebacterium jeikeium
K411]
gi|68264175|emb|CAI37663.1| transcription-repair coupling factor [Corynebacterium jeikeium
K411]
Length = 1258
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 56/173 (32%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+ +V+ +HG+G ++ E+ V A ++ + L+
Sbjct: 533 PAKKRNRVDPLALEPGDLVVHDSHGIGKFVKMTERTVGKGPD-----ASRREYLVLEYAP 587
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G + ++ + V G+ M + K E+V+
Sbjct: 588 SKRGGPGDQLYVPMDQLDMLSRYVGGEKPALSKMGGADWKNTKRKARGAVREIAGELVQL 647
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + + + AI ++ ++
Sbjct: 648 YASRQAAPGYAFAADTPWQREME---DAFPFTETEDQYNAIEAVKADMEKPVP 697
>gi|303245477|ref|ZP_07331761.1| transcription-repair coupling factor [Desulfovibrio fructosovorans
JJ]
gi|302493326|gb|EFL53188.1| transcription-repair coupling factor [Desulfovibrio fructosovorans
JJ]
Length = 1150
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 45/169 (26%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K R G+ +V+ +GV + + V +F ++ F L +P +
Sbjct: 473 KGLTSFDDIRPGDLVVHRDYGVASFEGLTRMTVDATGGDFLLLVFAD-DDKLYLPADRLG 531
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ K L + G R + + A++V
Sbjct: 532 LMQRYKG--PEGATPPLDRLGG----------ARWKSVRERAKKAIERIAADLVEMYAYR 579
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + + +AI+ + ++
Sbjct: 580 QVAKGYAYGPTNEL---YLEFEATFGFEETPDQEKAIDEVLADMERPEP 625
>gi|311740779|ref|ZP_07714606.1| transcription-repair coupling factor [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311304299|gb|EFQ80375.1| transcription-repair coupling factor [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 1213
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 59/182 (32%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFD-----K 52
+++ + G+ +V+ HG+G ++ E+ + E+ V+ + +
Sbjct: 496 PAKRRNKVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSRREYIVLEYAPSKRGQ 555
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + G++ M + K +
Sbjct: 556 PADQLWVPMDSLDLLSKYTG--------------GESPHLSKMGGSDWKNTKKKARAAVR 601
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P +S +++ + V + + AI+ ++ ++ S
Sbjct: 602 EIAGELVELYAKRQAAPGHQFSPDNPWQAEME---DNFPFVETEDQMLAIDAVKHDMEST 658
Query: 173 SS 174
Sbjct: 659 VP 660
>gi|54296975|ref|YP_123344.1| transcription-repair coupling factor [Legionella pneumophila str.
Paris]
gi|53750760|emb|CAH12167.1| Transcription-repair coupling factor [Legionella pneumophila str.
Paris]
Length = 1153
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 54/184 (29%), Gaps = 27/184 (14%)
Query: 2 TFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50
+ Q+R + R G +V+ GVG ++ + G EF V+A+
Sbjct: 457 STPQRRSTQKSVDPDLIIRDMAELRLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAY 516
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ VPV I ++ L + K +
Sbjct: 517 AG-DDKIYVPVTSLHMISRYTGVDSEHAP--LHKLGSDQWQKEKK-----------KAAE 562
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +A + DL+ + +S + + + +AI I ++
Sbjct: 563 KIHDVAIELLDLYAKREAQPGHQYD--FNQSEYIKFASGFPFTETPDQLQAIEQIIRDMQ 620
Query: 171 SKSS 174
S
Sbjct: 621 SPRP 624
>gi|221134655|ref|ZP_03560958.1| transcription-repair coupling factor [Glaciecola sp. HTCC2999]
Length = 1170
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 55/177 (31%), Gaps = 23/177 (12%)
Query: 5 QKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++ TG+ +V+ HGVG ++ + G+ EF V L
Sbjct: 481 KRQATDESAIIRNLAELSTGQPVVHIEHGVGRYLGLETLDAGGVTTEF-VAIEYGKGAKL 539
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV I + A + G + + + + +A
Sbjct: 540 YVPVSSLHFISRYSGGDPDT---APLHLLGNDTWNKAK----------EKAAKKVRDVAA 586
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ + + + + + + +AIN + ++ S+
Sbjct: 587 ELLNVYAKRAAKPGFAHDIVWDD--YKKFADSFPFPETPDQEQAINAVLNDMGMPSA 641
>gi|296314532|ref|ZP_06864473.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
43768]
gi|296838843|gb|EFH22781.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
43768]
Length = 753
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G + ++ G E ++ + + L VPV + I
Sbjct: 72 DLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAG-EAQLYVPVSQLHLISR 130
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S AL + A K + A + +L+ +
Sbjct: 131 Y--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDTAAELLNLYAQRAAQ 177
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +L+
Sbjct: 178 SGHKFEINEMD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 220
>gi|319953407|ref|YP_004164674.1| transcription-repair coupling factor [Cellulophaga algicola DSM
14237]
gi|319422067|gb|ADV49176.1| transcription-repair coupling factor [Cellulophaga algicola DSM
14237]
Length = 1125
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 57/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HGVG +++ +V G K E + ++ L V
Sbjct: 421 SKKQAITLKELTRLDIGDYVTHMDHGVGKFGGLQKIDVEGKKQEAIKL-VYGERDILYVS 479
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I G + S ++ K S ++++
Sbjct: 480 IHSLHKISK------------FTGKDGTPPKIYKLGSGAWKKVKEKAKSRVKKIAFDLIQ 527
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Y+ + + + ++ + +A I+ ++ S+
Sbjct: 528 IYAKRRTLKGFQYAPDGYLQ---HELEASFIYEDTPDQSKATEDIKRDMESERP 578
>gi|298369031|ref|ZP_06980349.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
str. F0314]
gi|298283034|gb|EFI24521.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
str. F0314]
Length = 723
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G + ++ G E ++ + + L VPV + I
Sbjct: 46 DLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EAQLYVPVSQLHLISR 104
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S AL + A K + A + +L+ +
Sbjct: 105 Y--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDTAAELLNLYAQRAAQ 151
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +L+
Sbjct: 152 SGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 194
>gi|254420843|ref|ZP_05034567.1| transcription-repair coupling factor [Brevundimonas sp. BAL3]
gi|196187020|gb|EDX81996.1| transcription-repair coupling factor [Brevundimonas sp. BAL3]
Length = 1156
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/178 (11%), Positives = 52/178 (29%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++R + TG+ +V+ HG+G +K ++ + + + + L
Sbjct: 471 PRKKRRASNFLAEASALTTGDLVVHLDHGIGRYEGLKTLDIQQAPHDCLELVYAG-ESKL 529
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + R S++ + L + G S +
Sbjct: 530 YLPVENIDLL-TRYGSDSEGAQ--LDRLGGAG--------------WQARKSKAKERLRA 572
Query: 118 VVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L ++ ++ + + AI + +L +
Sbjct: 573 MAEGLIALAAKRALRETDAVVPPPGLFAEFCARFPYEETDDQLNAIGDVLEDLGKGTP 630
>gi|148360394|ref|YP_001251601.1| transcription repair coupling factor [Legionella pneumophila str.
Corby]
gi|296106539|ref|YP_003618239.1| transcription-repair coupling factor (superfamily II helicase)
[Legionella pneumophila 2300/99 Alcoy]
gi|148282167|gb|ABQ56255.1| transcription repair coupling factor [Legionella pneumophila str.
Corby]
gi|295648440|gb|ADG24287.1| transcription-repair coupling factor (superfamily II helicase)
[Legionella pneumophila 2300/99 Alcoy]
Length = 1153
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 54/184 (29%), Gaps = 27/184 (14%)
Query: 2 TFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50
+ Q+R + R G +V+ GVG ++ + G EF V+A+
Sbjct: 457 STPQRRSTQKSVDPDLIIRDMAELRLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAY 516
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ VPV I ++ L + K +
Sbjct: 517 AG-DDKIYVPVTSLHMISRYTGVDSEHAP--LHKLGSDQWQKEKK-----------KAAE 562
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +A + DL+ + +S + + + +AI I ++
Sbjct: 563 KIHDVAIELLDLYAKREAQPGHQYD--FNQSEYIKFASGFPFTETPDQLQAIEQIIRDMQ 620
Query: 171 SKSS 174
S
Sbjct: 621 SPRP 624
>gi|114570035|ref|YP_756715.1| transcription-repair coupling factor [Maricaulis maris MCS10]
gi|114340497|gb|ABI65777.1| transcription-repair coupling factor [Maricaulis maris MCS10]
Length = 1172
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 21/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++++ A G+ +++ HG+G +K V + + + L
Sbjct: 482 PRKKRKSADIIVEAGSLSPGDLVIHADHGLGRFIGLKTLPVQDAPHDC-IELEYSGQAKL 540
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + ++ W R + ++ I
Sbjct: 541 YLPVENIELLSRYGAESETAQL---------DKLGGVAWQARKAKAKKRLRDMADQLIKI 591
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L R E S A + + + AI+ + +L
Sbjct: 592 AAERLARKAEPIETSSG-------AFDEFCSTFPYPETDDQLNAIDDVLTDLGRGRP 641
>gi|313148344|ref|ZP_07810537.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
gi|313137111|gb|EFR54471.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
Length = 1128
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + + E + +++ + V + +
Sbjct: 434 ELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKL-VYQNEDVVFVSIHSLHKVSK 492
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 493 YKGKE------------GEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRREEK 540
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + ++ + +A ++ ++
Sbjct: 541 GFAYSPDSFLQR---ELEASFIYEDTPDQSKATADVKQDMERDMP 582
>gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf.
saccharolyticum K10]
Length = 1185
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 65/173 (37%), Gaps = 18/173 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
++ ++ G+++V+ HG+G I++ E + ++ I + L +P
Sbjct: 494 AYEGRKIQSFSELSVGDYVVHENHGLGIYRGIEKIEQDKVVKDYIKIEYAD-GGNLYLPA 552
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K I ++A + L + G K + A+ E+ +D
Sbjct: 553 TKLEGIQKYAGADAKRPK--LNRLGGSE--------------WNKTKTRVRGAVKEIAKD 596
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKS 173
L + + ++ + ++ R E + + EAI+ ++ ++ S+
Sbjct: 597 LVKLYAARQEQEGFQYGPDTVWQREFEEMFPYEETEDQLEAIDAVKRDMESRK 649
>gi|226330514|ref|ZP_03806032.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198]
gi|225201309|gb|EEG83663.1| hypothetical protein PROPEN_04432 [Proteus penneri ATCC 35198]
Length = 708
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 16/160 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ ++++ + L VPV I
Sbjct: 34 ELSIGQPVVHLQHGVGRYQGMTTLEAGGVKAEYLMLSYAGND-KLYVPVSSLHLISRYSG 92
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + + + +
Sbjct: 93 GADE--NAPLHKLGGDA----------WVRARQKAAEKVRDVAAELLDVYAQREVKTGFA 140
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ ++ + + + + AIN + ++
Sbjct: 141 F---KMDKEQYQTFRQSFPFETTPDQEMAINAVLSDMCQA 177
>gi|315634772|ref|ZP_07890054.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
33393]
gi|315476324|gb|EFU67074.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
33393]
Length = 1149
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + E G+K E+ ++ + L VPV I
Sbjct: 478 ELQIGQPVVHLDHGVGRYGGLVSLENGGIKAEYLLLNYAN-DSKLYVPVASLHLISRYVG 536
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E + S I +V +L +Q E
Sbjct: 537 GADETA----------------PLHKLGSEAWGRARSKAAEKIRDVAAELLDVYAQREAQ 580
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + AIN + +++ +
Sbjct: 581 KGFAFQYDREEFQQFTATFPFEETHDQLMAINAVISDMTLPKA 623
>gi|255010538|ref|ZP_05282664.1| putative transcription-repair coupling factor [Bacteroides fragilis
3_1_12]
Length = 1125
Score = 89.1 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + + E + +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKL-VYQNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRREEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + ++ + +A ++ ++
Sbjct: 538 GFAYSPDSFLQR---ELEASFIYEDTPDQSKATADVKQDMERDMP 579
>gi|225390248|ref|ZP_03759972.1| hypothetical protein CLOSTASPAR_03999 [Clostridium asparagiforme
DSM 15981]
gi|225043673|gb|EEG53919.1| hypothetical protein CLOSTASPAR_03999 [Clostridium asparagiforme
DSM 15981]
Length = 168
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 5/166 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ I+Y GV I EI E ++ + +K + + MR +
Sbjct: 1 MFEKGDLILYETAGVCRIEEISRLEFLKNDRVYYSLVPVFEKDSVIYVPVDNEKVKMRPI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP--- 129
E ++ + + +AQ Y + SG+ +A +++ +
Sbjct: 61 MSREEAEAFIEQLPAIEGRRDIGEKEKAQVYKQILLSGNHRELAAMIKGIFEVGQVRKGK 120
Query: 130 --EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + A + E+AA + + I L S +
Sbjct: 121 GNRLAVRDEENMKRAQKLLYGELAAALGMHPDQMPAYIGKRLESPA 166
>gi|254508504|ref|ZP_05120622.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
gi|219548529|gb|EED25536.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
Length = 1153
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMTTE-YVTLEYQNDAKLYVPVASLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEESAP--LHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGYKFELDRGQYATFKAGFPFEETDDQKMAINAVMSDMCQAKA 624
>gi|288575748|ref|ZP_06393934.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
gi|288567230|gb|EFC88790.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
Length = 724
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ +V+ HG+G + ++ G E ++ + + L VPV + I
Sbjct: 51 DLAEINIGDPVVHEEHGIGRYMGLVTMDLGGETNEMMLLEYAG-EAQLYVPVSQLHLISR 109
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S AL + A K + A + +L+ +
Sbjct: 110 Y--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARDTAAELLNLYAQRAAQ 156
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +L+
Sbjct: 157 SGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 199
>gi|269967617|ref|ZP_06181667.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
gi|269827704|gb|EEZ81988.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
Length = 1153
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVSSLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEE--NAPLHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGFKFELDRGQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 624
>gi|160937901|ref|ZP_02085259.1| hypothetical protein CLOBOL_02795 [Clostridium bolteae ATCC
BAA-613]
gi|158439127|gb|EDP16881.1| hypothetical protein CLOBOL_02795 [Clostridium bolteae ATCC
BAA-613]
Length = 205
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 62/164 (37%), Gaps = 7/164 (4%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIG 68
+ ++ G++I+Y GV + +I + + ++V+ + V +
Sbjct: 36 KIMYQKGQYIIYGIRGVCEVMDIITIDRPDGPKDRLYYVLRPYYQQDSKIVTPVDSEKTI 95
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT--- 125
R L + + ++ T +R + Y + + D +++ L+
Sbjct: 96 TRPLLSKEEALELIDKISDVKEMEVTNDKQREERYKEALKTCDCRVWISMIKALYLRRKD 155
Query: 126 --DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ + + + + +++A + + E+A + + E ++ I
Sbjct: 156 RLEQGKKMTDLDERYFKTAEDNLYSELALSLGMKKDEMVSYITE 199
>gi|149278180|ref|ZP_01884318.1| transcription-repair coupling factor [Pedobacter sp. BAL39]
gi|149230946|gb|EDM36327.1| transcription-repair coupling factor [Pedobacter sp. BAL39]
Length = 1114
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ + G+ + + HG+G +++ EV G E + + + + L V + I
Sbjct: 433 ELRDLKPGDFVTHIDHGIGKYAGLEKVEVNGKTQEMIRLVYADNDL-LYVNINSLNRIAK 491
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
E G A + + + ++++ +Q
Sbjct: 492 YSGKE------------GTAPKMNKLGTEAWDKLKKNTKKKVKDIARDLIKLYALRKAQV 539
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ E+ + ++ + +A + ++ ++ +
Sbjct: 540 GTAFDPDGYLET---ELEASFIYEDTPDQEKATSDVKKDMEAPHP 581
>gi|301163896|emb|CBW23451.1| putative transcription-repair coupling factor [Bacteroides fragilis
638R]
Length = 1125
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + + E + +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKL-VYQNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRREEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + ++ + +A ++ ++
Sbjct: 538 GFAYSPDSFLQR---ELEASFIYEDTPDQSKATADVKQDMERDMP 579
>gi|163856004|ref|YP_001630302.1| transcription-repair coupling factor [Bordetella petrii DSM 12804]
gi|163259732|emb|CAP42033.1| transcription-repair coupling factor [Bordetella petrii]
Length = 1153
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G+ +V+ HG+G + ++ ++EF + + L VPV + I
Sbjct: 484 DLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYA-SGSTLYVPVSQLHVIAR 542
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + K + + +L +Q
Sbjct: 543 YSGADPEAAP--LHQLGSGQ--------------WDKARRKAARQVRDTAAELLALYAQR 586
Query: 130 EKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+L + + + AI + +++S
Sbjct: 587 AAREGYVFKLPLNDYEAFAEGFGFEETADQSAAIQAVIADMTSGRP 632
>gi|60682433|ref|YP_212577.1| putative transcription-repair coupling factor [Bacteroides fragilis
NCTC 9343]
gi|265766134|ref|ZP_06094175.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
gi|60493867|emb|CAH08658.1| putative transcription-repair coupling factor [Bacteroides fragilis
NCTC 9343]
gi|263253802|gb|EEZ25267.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
Length = 1125
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + + E + +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKL-VYQNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRREEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + ++ + +A ++ ++
Sbjct: 538 GFAYSPDSFLQR---ELEASFIYEDTPDQSKATADVKQDMERDMP 579
>gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1]
gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1]
Length = 1187
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 65/173 (37%), Gaps = 18/173 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
++ ++ G+++V+ HG+G I++ E + ++ I + L +P
Sbjct: 496 AYEGRKIQSFSELSVGDYVVHENHGLGIYRGIEKIEQDKVVKDYIKIEYAD-GGNLYLPA 554
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K I ++A + L + G K + A+ E+ +D
Sbjct: 555 TKLEGIQKYAGADAKRPK--LNRLGGSE--------------WNKTKTRVRGAVKEIAKD 598
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKS 173
L + + ++ + ++ R E + + EAI+ ++ ++ S+
Sbjct: 599 LVKLYAARQEQEGFQYGPDTVWQREFEEMFPYEETEDQLEAIDAVKRDMESRK 651
>gi|225552173|ref|ZP_03773113.1| putative transcription factor [Borrelia sp. SV1]
gi|225371171|gb|EEH00601.1| putative transcription factor [Borrelia sp. SV1]
Length = 162
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +VYP HGVGTI +I+ +E G ++++ I F + M VPV K D G+R L
Sbjct: 3 FLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPVAKVDDFGIRALV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
VE +++ + + D++ A++ + L++ +Q E +
Sbjct: 63 SKEKVEEVFDVIKEFEGQIDS--KKIKDGGHEFYKKSDILDTAKLYKFLYKKSTQKELPF 120
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+++ + EI+ IS E I+ L
Sbjct: 121 YEKRILNDFELILEHEISLALQISFEEVKKKIKNILVDNKK 161
>gi|253564911|ref|ZP_04842367.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
gi|251946376|gb|EES86753.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
Length = 1125
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + + E + +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKL-VYQNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRREEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + ++ + +A ++ ++
Sbjct: 538 GFAYSPDSFLQR---ELEASFIYEDTPDQSKATADVKQDMERDMP 579
>gi|313673697|ref|YP_004051808.1| transcription-repair coupling factor [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940453|gb|ADR19645.1| transcription-repair coupling factor [Calditerrivibrio
nitroreducens DSM 19672]
Length = 1098
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/175 (9%), Positives = 63/175 (36%), Gaps = 19/175 (10%)
Query: 3 FQQKRD---AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K++ G+++V+ +G+G ++ + + G++ ++ I ++ ++ L V
Sbjct: 430 KKEKKEVFRTNISDLEPGDYVVHIDYGIGIFRGLEHKTIGGIEGDYIAIEYEGGEL-LFV 488
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ I A ++ + R ++ + +++
Sbjct: 489 SLENISHIQKYIG------------KGDVAVKLNSLQNTRWKKLKEQAQKSAKKVAIDLL 536
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ S+ + + + + + + AI + ++ S+ +
Sbjct: 537 KLYAERKAKLGFSFKDDGTF---MKIIEDSFEYDETEDQINAIRDVIADMESEKA 588
>gi|53714414|ref|YP_100406.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
gi|52217279|dbj|BAD49872.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
Length = 1125
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + + E + +++ + V + +
Sbjct: 431 ELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKL-VYQNEDVVFVSIHSLHKVSK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 490 YKGKE------------GEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRREEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + ++ + +A ++ ++
Sbjct: 538 GFAYSPDSFLQR---ELEASFIYEDTPDQSKATADVKQDMERDMP 579
>gi|38233507|ref|NP_939274.1| transcription-repair coupling factor [Corynebacterium diphtheriae
NCTC 13129]
gi|38199767|emb|CAE49427.1| transcription-repair coupling factor [Corynebacterium diphtheriae]
Length = 1264
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/182 (13%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFD-----K 52
+++ +TG+++V+ HG+G ++ E+ + E+ V+ + +
Sbjct: 505 PAKRRHRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQ 564
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + V G+ M + K +
Sbjct: 565 PADQLYVPMDSLDMLSKY--------------VGGEKPTLSKMGGSDWKNTKKKARAAVR 610
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + S P +++ ++ + V + + AI+ ++ ++
Sbjct: 611 EIAGELVELYAKRQSAPGHAFAPDSPWQHEME---DNFPYVETEDQMLAIDAVKADMEKP 667
Query: 173 SS 174
S
Sbjct: 668 SP 669
>gi|42525214|ref|NP_970594.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
HD100]
gi|39577425|emb|CAE81248.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
HD100]
Length = 1172
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 61/172 (35%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+Q + + G+ +V+ HG+G +K ++G++ E+ + KDK L +PV
Sbjct: 502 QKQAKRLSFGDLKPGDLVVHTKHGIGQYEGLKIMNISGVESEYIQV-GYKDKDKLYLPVY 560
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + + +++ ++ AK+ S A+++
Sbjct: 561 RVGQLQKFSGAGTSILDKLGGTA--------------WEKTKAKVKSHVRDIAADLLTLY 606
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + E + + + AIN I +L S
Sbjct: 607 AKRAEMHRPAFVIK---EDEVLMFENGFPYEETDDQLRAINDIRKDLKSTKP 655
>gi|325830839|ref|ZP_08164223.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
gi|325487246|gb|EGC89689.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
Length = 1161
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
++ G+++V+ AHGV E+ ++V G ++ ++ + L VPV + + R +
Sbjct: 494 YQPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLE-YSEGDKLYVPVEQLDRV-TRYVG 551
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
R +L A R + R + D+ A V+
Sbjct: 552 PEGASPRLTRL--NTADWSRALAKARKATKKLAFDLVDVYARRASVQGYRFGSDT----- 604
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+A M + + AI ++ ++ S
Sbjct: 605 -------AAQREMEEAFPYQETPDQLAAIADVKADMQSAKP 638
>gi|300858127|ref|YP_003783110.1| transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis FRC41]
gi|300685581|gb|ADK28503.1| transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis FRC41]
Length = 1265
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFD-----K 52
+++ +TG+ +V+ HG+G ++ E+ + E+ V+ + +
Sbjct: 508 PAKRRNRVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQ 567
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + V G+ M + K +
Sbjct: 568 PADQLFVPMDSLDLLSKY--------------VGGEKPALSKMGGSDWKNTKKKARAAVR 613
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + S P ++ ++ + V + + AI ++ ++
Sbjct: 614 EIAGELVELYAKRQSAPGHPFAPDSPWQYEME---DNFPYVETEDQMMAIEAVKADMEKP 670
Query: 173 SS 174
Sbjct: 671 VP 672
>gi|329960904|ref|ZP_08299183.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057]
gi|328532190|gb|EGF58994.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057]
Length = 1164
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+++V+ HGVG + G + + ++ + V + +
Sbjct: 471 ELNQFTPGDYVVHTDHGVGRFAGLVRI-PNGNTTQEVMKLVFQNDDVVFVSIHSLHKVSK 529
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + ++ + + ++++ + +
Sbjct: 530 YKGKE------------GEAPRLNKLGTGAWEKLKDRTKTKIKDIARDLIKLYSQRREEK 577
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + ++ + ++ ++ ++ S
Sbjct: 578 GFQYSPDSFLQR---ELEASFIYEDTPDQSKSTADVKADMESARP 619
>gi|163760200|ref|ZP_02167283.1| transcription-repair coupling factor (TRCF) protein [Hoeflea
phototrophica DFL-43]
gi|162282599|gb|EDQ32887.1| transcription-repair coupling factor (TRCF) protein [Hoeflea
phototrophica DFL-43]
Length = 1168
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G G ++V+ HG+G ++ E AG + + L +PV +
Sbjct: 497 SEVSGLDEGSYVVHAEHGIGQFIGLRTIEAAGAPHACLELHYAG-DAKLFLPVENIELLT 555
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
A R+ W R AK+ L ++R +
Sbjct: 556 RYGSDSAEVQL---------DRLGGVAWQSR----KAKLKKRLLDMAEGLIRIAAERHMR 602
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + AI + +L+
Sbjct: 603 AAPVLG---APEGLYDEFSARFPYDETEDQMAAIERVRGDLAEGRP 645
>gi|312128223|ref|YP_003993097.1| transcription-repair coupling factor [Caldicellulosiruptor
hydrothermalis 108]
gi|311778242|gb|ADQ07728.1| transcription-repair coupling factor [Caldicellulosiruptor
hydrothermalis 108]
Length = 1141
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 18/173 (10%)
Query: 4 QQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ K+D + + G+ +V+ +G+G ++ V G E +V + L VP
Sbjct: 470 KSKKDTFYTVEDLKPGDFVVHRTYGIGKFLGFEKITVEGTTKE-YVKLEYANSSYLYVPT 528
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
I + + S+ Q+ K+ + ++V
Sbjct: 529 TNLDVIEKYIGT------------DDVQPKLSKLGSQEWQKQKQKVRKSLEVVAKDLVEL 576
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +S+ +++ + + +AI I+ ++ S+
Sbjct: 577 YAKRQLNKGFKFSKDTVWQ---KEFEERFPYTETEGQLQAIEEIKRDMESEKP 626
>gi|289422646|ref|ZP_06424487.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
653-L]
gi|289156946|gb|EFD05570.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
653-L]
Length = 1133
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 63/168 (37%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ GVG T I++ V G+K ++ I K L VP+ +
Sbjct: 486 KIDSFMELKLGDYVVHENSGVGKYTGIEQVSVNGIKRDYIKI-IYKGGDNLYVPIDQMDK 544
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + V+ + + + K+ +++ + +
Sbjct: 545 VQKYIGGDVEKVK------------LNKLGGQEWSKAKRKVKKEIEDMTQDLLELYSKRE 592
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+ YS+ ++++ + + + +AI + ++ S+ +
Sbjct: 593 SRKGYKYSKDTIWQT---EFEEKFPYQETDDQLKAIKETKKDMESQKA 637
>gi|269960991|ref|ZP_06175360.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
gi|269834210|gb|EEZ88300.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
Length = 1123
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV I
Sbjct: 449 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVSSLNLISRYSG 507
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 508 GAEDSAP--LHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 551
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 552 PGYKFELDRGQYATFKATFPFEETDDQSMAINAVLSDMCQAKA 594
>gi|149926139|ref|ZP_01914401.1| Transcription-repair coupling factor [Limnobacter sp. MED105]
gi|149824957|gb|EDM84169.1| Transcription-repair coupling factor [Limnobacter sp. MED105]
Length = 1188
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ EF + + L VPV + I
Sbjct: 519 DLSELKIGDPVVHQQHGIGRYKGLISMDLGEGASEFLHLEYAN-GSNLFVPVAQLHVIAR 577
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ + + K + + +L ++
Sbjct: 578 YSGADPE--NAPVHALGSGQ--------------WEKAKKKAAKMVRDTAAELLNLYARR 621
Query: 130 EKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
V + + + AI + +++S
Sbjct: 622 ALRKGHEFKLSIGDYEAFVEKFGFEETADQAAAIRAVIADMTSPRP 667
>gi|91225270|ref|ZP_01260438.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
gi|91189909|gb|EAS76181.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
Length = 1153
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVSSLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEDSAP--LHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGFKFELDRGQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 624
>gi|302205849|gb|ADL10191.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis C231]
gi|302330407|gb|ADL20601.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis 1002]
gi|308276083|gb|ADO25982.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis I19]
Length = 1264
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFD-----K 52
+++ +TG+ +V+ HG+G ++ E+ + E+ V+ + +
Sbjct: 507 PAKRRNRVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQ 566
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + V G+ M + K +
Sbjct: 567 PADQLFVPMDSLDLLSKY--------------VGGEKPALSKMGGSDWKNTKKKARAAVR 612
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + S P ++ ++ + V + + AI ++ ++
Sbjct: 613 EIAGELVELYAKRQSAPGHPFAPDSPWQYEME---DNFPYVETEDQMMAIEAVKADMEKP 669
Query: 173 SS 174
Sbjct: 670 VP 671
>gi|218513284|ref|ZP_03510124.1| transcription-repair coupling factor [Rhizobium etli 8C-3]
Length = 338
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 16/156 (10%)
Query: 19 HIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFV 78
++V+ HG+G ++ EV G+ ++ ++ L +PV + I SEA
Sbjct: 1 YVVHANHGIGKYIGMETLEVDGVHQDYM-TILYQNDDKLFIPVTQLNLIQKYVASEA--- 56
Query: 79 ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQL 138
KA + + K++S ++++ +S+ ++
Sbjct: 57 ---------KAPRINKLGGSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDA 107
Query: 139 YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + I+ ++ +
Sbjct: 108 YQ---KEFENAFPYSETDDQLRSAAEIKRDMEKEKP 140
>gi|254518837|ref|ZP_05130893.1| CarD family transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226912586|gb|EEH97787.1| CarD family transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 162
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ +++VY ++GV +T+I++ + +LE+++++ ++ I MR+L
Sbjct: 1 MFKINDYVVYGSNGVCKVTDIEQVTLRNEELEYYILSPVYNEKMTIKTPVNNQKILMREL 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ---- 128
+ LK + V+ RR +EY A I G+ + +V+ + +
Sbjct: 61 MTKAEIVNLLKEISKNETVEIEDSRRRVEEYKAIIRRGNAEELIKVINSIKLEKDEKISI 120
Query: 129 -PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + ++ + SA ++ +E+A V I E + I+ N+
Sbjct: 121 GKKLNKTDEDIMISASKQLYQEMAIVLDIDVDEVQDYIKNNI 162
>gi|254229022|ref|ZP_04922443.1| transcription-repair coupling factor [Vibrio sp. Ex25]
gi|262394765|ref|YP_003286619.1| transcription-repair coupling factor [Vibrio sp. Ex25]
gi|151938490|gb|EDN57327.1| transcription-repair coupling factor [Vibrio sp. Ex25]
gi|262338359|gb|ACY52154.1| transcription-repair coupling factor [Vibrio sp. Ex25]
Length = 1153
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GMK E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMKTE-YVTLEYQNDAKLYVPVSSLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEESAP--LHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGFKFELDRGQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 624
>gi|150004807|ref|YP_001299551.1| transcription-repair coupling factor [Bacteroides vulgatus ATCC
8482]
gi|319641987|ref|ZP_07996654.1| transcription-repair coupling factor [Bacteroides sp. 3_1_40A]
gi|149933231|gb|ABR39929.1| transcription-repair coupling factor [Bacteroides vulgatus ATCC
8482]
gi|317386412|gb|EFV67324.1| transcription-repair coupling factor [Bacteroides sp. 3_1_40A]
Length = 1121
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+ +V+ HGVG + G + + +++ + V + I
Sbjct: 431 ELSQFEPGDFVVHIDHGVGRFGGLVRI-PNGNTTQEVIKLIYQNEDVVFVSIHSLHKISK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + S +++R + +
Sbjct: 490 YKGKE------------GETPRLNKLGTGAWEKMKERTKSKIKDIARDLIRLYSQRKQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + + ++ + +A + ++ S
Sbjct: 538 GFSYSPDSFMQ---HELEASFIYEDTPDQLKATQDAKADMESDRP 579
>gi|148239816|ref|YP_001225203.1| transcription-repair coupling factor [Synechococcus sp. WH 7803]
gi|147848355|emb|CAK23906.1| Transcription-repair coupling factor [Synechococcus sp. WH 7803]
Length = 1180
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/175 (11%), Positives = 60/175 (34%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G ++++ ++G ++ V+ + L+V
Sbjct: 473 RRRKAASRTVDPNKMRPGDFVVHRNHGIGRFQKLEKLAISGEVRDYLVVQYA--DGILRV 530
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + + + RA + K+ ++V
Sbjct: 531 AADQLGSLGRYRANSDAPPQ-----LSKMGGSAWVKAKERASKALRKV-------ALDLV 578
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ ++S + + + +A ++ ++
Sbjct: 579 KLYAERHQAPGFAFPVDGPWQS---ELEESFPYEPTPDQLKATAEVKKDMEKSQP 630
>gi|37728037|gb|AAO43498.1| transcription repair coupling factor [Rhizobium etli]
Length = 1114
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G G +V+ HG+G +K E AG + + + L +PV +
Sbjct: 496 SEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 554
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G A Q AK+ L ++R ++
Sbjct: 555 RY---GGEGTDAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTR 601
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +L +
Sbjct: 602 HAPVLTTPDGL---YDEFAARFPYDETEDQDNAIEAVRSDLGAGRP 644
>gi|86357714|ref|YP_469606.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
CFN 42]
gi|86281816|gb|ABC90879.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
CFN 42]
Length = 1167
Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G G +V+ HG+G +K E AG + + + L +PV +
Sbjct: 496 SEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 554
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G A Q AK+ L ++R ++
Sbjct: 555 RY---GGEGTDAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTR 601
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +L +
Sbjct: 602 HAPVLTTPDGL---YDEFAARFPYDETEDQDNAIEAVRSDLGAGRP 644
>gi|121602625|ref|YP_989090.1| transcription-repair coupling factor [Bartonella bacilliformis
KC583]
gi|120614802|gb|ABM45403.1| transcription-repair coupling factor [Bartonella bacilliformis
KC583]
Length = 1163
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 23/178 (12%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ Q+KR+ + +G+ +V+ HGVG +K AG+ + I++ L
Sbjct: 481 SKQRKRNANFISEISTLNSGDFVVHIDHGVGQFIGLKTIMTAGILRDCLEISYAGGD-RL 539
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEY-DAKINSGDLIAIA 116
+PV + E + V R +++ IA
Sbjct: 540 FLPVENVELLSRY------GSEDTDVTLDKLGGVAWQARKTRFKKHLLQIAGQLICIAAE 593
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + V + + AI+ + +L +
Sbjct: 594 RAMRSAPILTPPVSL-----------FDEFVARFPYEETEDQMSAIDAVLDDLEAGKP 640
>gi|320450396|ref|YP_004202492.1| transcription-repair coupling factor [Thermus scotoductus SA-01]
gi|320150565|gb|ADW21943.1| transcription-repair coupling factor [Thermus scotoductus SA-01]
Length = 980
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 55/167 (32%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G+ +++P HGVG ++ +EV G++ ++ V+ K + L +PV + +
Sbjct: 316 TDPGALSPGDFLIHPDHGVGQYLGLETREVLGVRRDYLVL-RYKGEGKLYLPVEQLPLLR 374
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ ++ Q K + E+ L ++
Sbjct: 375 RHPGTTDD------------PPELSSLGKGEWQRLKEKARK----DVEELAARLLILQAK 418
Query: 129 PEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKSS 174
+ + + ++ + + +A+ + +L +
Sbjct: 419 RKATPGRAFPPLPEWDPLIERGFPHELTPDQKQALEEVLRDLEAPFP 465
>gi|307298712|ref|ZP_07578515.1| transcription-repair coupling factor [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915877|gb|EFN46261.1| transcription-repair coupling factor [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 1012
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 19/164 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++V+ +G+G ++ E E+ ++ +D + VPV + +
Sbjct: 347 TELEEGDYVVHKEYGIGRYLGVRTVENILGTREYLLLE-YRDGNKIYVPVDRVDRVHKYI 405
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S L +RG A + S + ++ DL E
Sbjct: 406 GSTEGIQ---LNSLRGTA--------------WTRQKSKVNKEVKALISDLSNLYGSREV 448
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +S + + V + + +A+ + +L S
Sbjct: 449 TSGVPLTGDSEMEKGFRDSFPYVETEDQQKAVEEVMEDLQSTKP 492
>gi|167760495|ref|ZP_02432622.1| hypothetical protein CLOSCI_02869 [Clostridium scindens ATCC 35704]
gi|167661861|gb|EDS05991.1| hypothetical protein CLOSCI_02869 [Clostridium scindens ATCC 35704]
Length = 169
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 16/164 (9%), Positives = 50/164 (30%), Gaps = 7/164 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEV--AGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
F+ G+++ + GV + +I + ++ + K E++ + D +R
Sbjct: 1 MFKIGDYVTHYKEGVCEVIDIGKLDMRCSDRKKEYYTLRPLYDAGGTLYMPVANERNQIR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
+ ++ + + T +R Y + +++ +
Sbjct: 61 GVITYEEARALIEDIPNIEVLWVTDEKKREALYKEAVFKNQCKEWIAIIKTSYLRKMDRL 120
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + + A + E+A I + + +
Sbjct: 121 SSGKKSINVDDKYLSIAEQFLYGELAVALEIPREKIRKYVTERM 164
>gi|257791044|ref|YP_003181650.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
gi|257474941|gb|ACV55261.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
Length = 1161
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
++ G+++V+ AHGV E+ ++V G ++ ++ + L VPV + + R +
Sbjct: 494 YQPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLE-YSEGDKLYVPVEQLDRV-TRYVG 551
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
R +L A R + R + D+ A V+
Sbjct: 552 PEGASPRLTRL--NTADWSRALAKARKATKKLAFDLVDVYARRASVQGYRFGPDT----- 604
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+A M + + AI ++ ++ S
Sbjct: 605 -------AAQREMEEAFPYQETPDQLAAIADVKADMQSAKP 638
>gi|94267602|ref|ZP_01290937.1| Transcription factor CarD [delta proteobacterium MLMS-1]
gi|93451931|gb|EAT02653.1| Transcription factor CarD [delta proteobacterium MLMS-1]
Length = 613
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 51/159 (32%), Gaps = 18/159 (11%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ +V+ HG+G + E+ G+ ++ + L +PV +
Sbjct: 472 KIVSHDEINPGDPVVHRRHGIGIYRGLVPIELDGITNDYL-EIHYRGADKLYIPVDQLNS 530
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+G K + + + K+ A+ +V RDL +
Sbjct: 531 VGKYKG------------LADQEPTLDKLGDNSWLATRQKVKK----AVWQVARDLLKLY 574
Query: 127 SQPEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINL 164
++ + + R + + + + +A+
Sbjct: 575 AKRQLAEGNRFSPPGEMYHELEESFPYDETPGQLKAMAR 613
>gi|283768627|ref|ZP_06341539.1| transcription-repair coupling factor [Bulleidia extructa W1219]
gi|283105019|gb|EFC06391.1| transcription-repair coupling factor [Bulleidia extructa W1219]
Length = 1142
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q +++V+ +GVG I+ +E+ +K +F I K L VP+ + + RK
Sbjct: 469 QELEPKDYVVHANYGVGQYMGIETKEINHIKRDFLRI-IYKANSELLVPLEQFRLV--RK 525
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ L + K + + EV L S E+
Sbjct: 526 FVSREGIVPKLNKLGSGD--------------WEKTKTKLQKNVEEVATRLLNLYSSREQ 571
Query: 132 SYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + +A+ I+ ++ S
Sbjct: 572 HIGYAFSKDTEETKKFEDAFPYDLTEDQKKAMVEIKKDMESSKP 615
>gi|262189663|ref|ZP_06048040.1| transcription-repair coupling factor [Vibrio cholerae CT 5369-93]
gi|262034453|gb|EEY52816.1| transcription-repair coupling factor [Vibrio cholerae CT 5369-93]
Length = 699
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V+ +++ L VPV I
Sbjct: 25 ELKLGQPVVHIDHGIGRYLGLQTLEAGGMVSE-YVMLEYQNEAKLYVPVSSLNLISRYSG 83
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+A K + +V +L ++ E
Sbjct: 84 GAEEAAQ--LHKLGGEA--------------WVKARRKAAEKVRDVAAELLDVYAKREIK 127
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 128 PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA 170
>gi|15604448|ref|NP_220966.1| transcription-repair coupling factor [Rickettsia prowazekii str.
Madrid E]
gi|6226643|sp|O05955|MFD_RICPR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|3861142|emb|CAA15042.1| TRANSCRIPTION-REPAIR COUPLING FACTOR (mfd) [Rickettsia prowazekii]
gi|292572220|gb|ADE30135.1| Transcription-repair coupling factor [Rickettsia prowazekii Rp22]
Length = 1120
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ + GE +V+ HG+G +++ ++ G +F I + + L V
Sbjct: 442 TNKKLKNILLELDNLKEGEFVVHKDHGIGQFLKLEAFKIQGKLHDFLKILYFGND-KLYV 500
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A ++ W++ + +I L I
Sbjct: 501 PVENIEVIKKYGSDNAELN-----------KLGSVAWNKSKAKLKNRIKEISLHLIQIAA 549
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + +L A ++ + + AIN I +L++
Sbjct: 550 K-------RKLNISTPIELDLEAYDKFCANFPFSETEDQLTAINDIREDLTNG 595
>gi|146277540|ref|YP_001167699.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
17025]
gi|145555781|gb|ABP70394.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
17025]
Length = 1163
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 52/185 (28%), Gaps = 32/185 (17%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEV-------AGMKLEFFVIAF 50
++++ G+ +V+ HGVG ++ V G ++ +
Sbjct: 461 PKKRRKAENFLREHDTLTPGDLVVHVEHGVGRYMGLETLRVPQPPSNKPGPPHDYLHL-V 519
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ L +PV + E + + G A +
Sbjct: 520 YAEDAKLYLPVENIELLSRY-----GHEEGLIDKLGGGA--------------WQAKKAR 560
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
I E+ L R ++ ++ + S + + AI + +L
Sbjct: 561 LKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSARFPYQETDDQLSAIADVIKDL 620
Query: 170 SSKSS 174
S S
Sbjct: 621 ESGSP 625
>gi|163753497|ref|ZP_02160621.1| transcription-repair coupling factor [Kordia algicida OT-1]
gi|161327229|gb|EDP98554.1| transcription-repair coupling factor [Kordia algicida OT-1]
Length = 1095
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +K+ +V G K E + ++ L +
Sbjct: 400 AKKQAITLKELTNLEVGDYVTHIDHGIGKFGGLKKIDVEGKKQEAIKL-IYGERDILYLS 458
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GKA + S ++ K + ++
Sbjct: 459 IHSLHKISK------------FNGKDGKAPKIYKLGSGAWKKLKQKTKARVKHIAYNLIE 506
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q Y + + + ++ + +A ++ ++ S+
Sbjct: 507 LYAKRRMQKGIQYGPDTHLQ---HELEASFIYEDTPDQSKATQDVKADMESERP 557
>gi|85708435|ref|ZP_01039501.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
gi|85689969|gb|EAQ29972.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
Length = 1163
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A Q G+ +V+ HG+G ++ V + + V K L +PV +
Sbjct: 479 AELQALSRGDLVVHVEHGIGKYLGLEPVPVGKSQHDC-VTLEYKGGDKLYIPVENLEVLS 537
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
SE L + G+A K + I + +L + ++
Sbjct: 538 RYGSSEETVP---LDRLGGEA--------------WQKRRAKLKERITAIAGELMKVAAE 580
Query: 129 PEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ R E A N+ V + + AI + +L S
Sbjct: 581 RALKKAPRFEAEDASFNQFVDRFPWEETDDQDAAIADVLRDLESGKP 627
>gi|285808213|gb|ADC35747.1| transcription-repair coupling factor [uncultured bacterium 293]
Length = 1139
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 15/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + + G+ +V+ HG+G ++ +V G +EF V+ + LKVPV I
Sbjct: 463 SDFRDLKIGDLVVHQDHGIGRFEGLQTLDVGGTSVEFMVL-AYQGGDKLKVPVEVFDRIQ 521
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
E + R ++ ++ AE+++ ++
Sbjct: 522 KYSSMEGGARPAL-----------DKLGGPRWEKVKRRVKKAMRDMAAELLKLYAERKAR 570
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P ++++ + + + AI + ++S +
Sbjct: 571 PGHAFAQDSPWLREFEETF---EYEETPDQAAAIADVSRDMSDPAP 613
>gi|254882671|ref|ZP_05255381.1| transcription-repair coupling factor [Bacteroides sp. 4_3_47FAA]
gi|254835464|gb|EET15773.1| transcription-repair coupling factor [Bacteroides sp. 4_3_47FAA]
Length = 1145
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+ +V+ HGVG + G + + +++ + V + I
Sbjct: 455 ELSQFEPGDFVVHIDHGVGRFGGLVRI-PNGNTTQEVIKLIYQNEDVVFVSIHSLHKISK 513
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + S +++R + +
Sbjct: 514 YKGKE------------GETPRLNKLGTGAWEKMKERTKSKIKDIARDLIRLYSQRKQEK 561
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + + ++ + +A + ++ S
Sbjct: 562 GFSYSPDSFMQ---HELEASFIYEDTPDQLKATQDAKADMESDRP 603
>gi|114047309|ref|YP_737859.1| transcription-repair coupling factor [Shewanella sp. MR-7]
gi|113888751|gb|ABI42802.1| transcription-repair coupling factor [Shewanella sp. MR-7]
Length = 1160
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + L VPV I +
Sbjct: 486 ELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLE-YSGGDKLYVPVSNLHMISRYSV 544
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ + AK + + I +V +L ++ +
Sbjct: 545 GADG----------------DAHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQAR 588
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E + + + + ++ + AI+ + ++ S
Sbjct: 589 PGESCDINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSP 629
>gi|332297986|ref|YP_004439908.1| transcription-repair coupling factor [Treponema brennaborense DSM
12168]
gi|332181089|gb|AEE16777.1| transcription-repair coupling factor [Treponema brennaborense DSM
12168]
Length = 1185
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 15/162 (9%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ +G+G I+ + G + ++ + D+ + +P+ + +
Sbjct: 520 ELNPGDYVVHVNYGIGLFKGIERVKAMGNERDYIKLE-YDDEEIVFIPIEQVNLVQRYIG 578
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E G A + S+ + K+ +++ R +
Sbjct: 579 NE------------GCAPRLDRLGSKSWENRKNKVKKSVEDIAQKLIDLYSRRKAARGFP 626
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +++A + + ++ ++
Sbjct: 627 FPKDTEWQTA---FEAAFPYDETDDQLTVTAEVKADMEKPVP 665
>gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
Length = 1187
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 61/175 (34%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G +++ ++G ++ V+ + L+V
Sbjct: 480 RRRKAASRTVDPNKMRPGDFVVHRNHGIGRFLRLEKLAISGESRDYLVVQYA--DGLLRV 537
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + S E + A V T RA++ K+ ++V
Sbjct: 538 AADQLGSLGRFRASTDSPPE-----LNRMAGVAWTRAKERARKAVRKV-------AMDLV 585
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + + + +AI ++ ++
Sbjct: 586 KLYAERQQAAGFPFPADGPWQ---GELEDSFPYEPTPDQVKAIAEVKRDMEKPEP 637
>gi|294778383|ref|ZP_06743806.1| transcription-repair coupling factor [Bacteroides vulgatus PC510]
gi|294447645|gb|EFG16222.1| transcription-repair coupling factor [Bacteroides vulgatus PC510]
Length = 1145
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+ +V+ HGVG + G + + +++ + V + I
Sbjct: 455 ELSQFEPGDFVVHIDHGVGRFGGLVRI-PNGNTTQEVIKLIYQNEDVVFVSIHSLHKISK 513
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + S +++R + +
Sbjct: 514 YKGKE------------GETPRLNKLGTGAWEKMKERTKSKIKDIARDLIRLYSQRKQEK 561
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + + ++ + +A + ++ S
Sbjct: 562 GFSYSPDSFMQ---HELEASFIYEDTPDQLKATQDAKADMESDRP 603
>gi|121605445|ref|YP_982774.1| transcription-repair coupling factor [Polaromonas naphthalenivorans
CJ2]
gi|120594414|gb|ABM37853.1| transcription-repair coupling factor [Polaromonas naphthalenivorans
CJ2]
Length = 1161
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 46/172 (26%), Gaps = 23/172 (13%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE------FFVIAFDKDKMCLKVPVGK 63
G+ +V+ AHG+G + ++ + F+ DK L VPV +
Sbjct: 476 DLSELNVGDPVVHSAHGIGRYRGLINLDLGEKNPDGSPALQEFLHLEYADKATLYVPVSQ 535
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I A E L + K I + +L
Sbjct: 536 LHLISRYTGVSAD--EAPLHKLGSGQ--------------WEKARRKAAEQIRDSAAELL 579
Query: 124 RTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + AI+ + ++ S
Sbjct: 580 NIYARRAAREGHAFRYSPGDYEVFANDFGFDETPDQSAAIHAVIQDMISPRP 631
>gi|241204639|ref|YP_002975735.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858529|gb|ACS56196.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 1166
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G G +V+ HG+G ++ E AG + + + L +PV +
Sbjct: 495 SEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
E L + G A Q AK+ L ++R ++
Sbjct: 554 RY---GGEGTEAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTR 600
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AI + +L +
Sbjct: 601 HAPMLTTPEGL---YDEFAARFPYDETEDQENAIEAVRSDLGAGRP 643
>gi|116252138|ref|YP_767976.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256786|emb|CAK07876.1| putative transcription-repair coupling factor [Rhizobium
leguminosarum bv. viciae 3841]
Length = 1166
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G G +V+ HG+G ++ E AG + + + L +PV +
Sbjct: 495 SEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
E L + G A Q AK+ L ++R ++
Sbjct: 554 RY---GGEGTEAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTR 600
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AI + +L +
Sbjct: 601 HAPMLTTPEGL---YDEFAARFPYDETEDQENAIEAVRSDLGAGRP 643
>gi|296118194|ref|ZP_06836775.1| transcription-repair coupling factor [Corynebacterium ammoniagenes
DSM 20306]
gi|295968752|gb|EFG81996.1| transcription-repair coupling factor [Corynebacterium ammoniagenes
DSM 20306]
Length = 1223
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 59/182 (32%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFD-----K 52
+++ + G+ +V+ HG+G ++ E+ + + E+ V+ + +
Sbjct: 495 PAKRRNRVDPLALKQGDFVVHETHGIGKFLKMAERTIQTGEESSRREYIVLEYAPSKRGQ 554
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + G++ M + K +
Sbjct: 555 PADQLWVPMDSLDMLSKYTG--------------GESPHLSKMGGSDWKNTKKKARAAVR 600
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P + ++ + V + + AI+ ++ ++ S+
Sbjct: 601 EIAGELVELYAKRQAAPGHQFPPDTPWQMEME---DNFPYVETEDQMMAIDAVKEDMESQ 657
Query: 173 SS 174
Sbjct: 658 VP 659
>gi|159903468|ref|YP_001550812.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9211]
gi|159888644|gb|ABX08858.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9211]
Length = 1169
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++KR A + RTG+++V+ HG+G +I++ ++ ++ ++ + L+
Sbjct: 482 RRRKRSASKSIDHNKLRTGDYVVHRNHGIGKFIKIEKFVISQESRDYLLVQY--QDGTLR 539
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + +G + S K+ + K ++
Sbjct: 540 VAADQLGSLGRYRSSS------------DKSPRIGKLGGTAWLNAKEKARKSINKVAIDL 587
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + S+ ++S + + + AI ++ ++
Sbjct: 588 IRLYAERNKTEGYSFPPDAPWQS---ELEDAFQYEPTHDQLTAIKDVKNDMEKPKP 640
>gi|197124848|ref|YP_002136799.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
gi|196174697|gb|ACG75670.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
Length = 1241
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+ + + ++ G++ +F V+ L +PV K +
Sbjct: 513 RELNEGDLVVHVEHGIARYLGLTKMQIRGVEGDFLVL-AYDGADRLYLPVAKLRQVQKFT 571
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + + R +E K+ + E++ + P
Sbjct: 572 GASPETI-----RLDKLGGSSFALRKARVKEQLLKMAA-------ELLDIYAARAAHPGF 619
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+Y E + E + + +AI + ++
Sbjct: 620 AYPE---PDQLFREFEAEFPWEETPDQAKAIEDVVRDMRKGR 658
>gi|332288167|ref|YP_004419019.1| transcription-repair coupling factor [Gallibacterium anatis UMN179]
gi|330431063|gb|AEC16122.1| transcription-repair coupling factor [Gallibacterium anatis UMN179]
Length = 1147
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HGVG + + GM E+ V+ + + L VPV I
Sbjct: 473 ELKIGQPVVHLEHGVGRYDGLTTLDAGGMVAEYLVLRYAD-EAKLYVPVSSLHLISRYVG 531
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S K AE++ + +S+P +
Sbjct: 532 GGEENAP------------LHKLGSDAWARSRQKAAEKVRDVAAELLDVYAKRESRPGFA 579
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AIN + ++
Sbjct: 580 F---KYDREEFQQFADTFPFEETYDQQMAINAVIGDMCQAKP 618
>gi|23009120|ref|ZP_00050287.1| COG1329: Transcriptional regulators, similar to M. xanthus CarD
[Magnetospirillum magnetotacticum MS-1]
Length = 143
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 78/133 (58%), Positives = 109/133 (81%), Gaps = 1/133 (0%)
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
M L+VP KA +GMRKL+E V++AL ++ G+AR+KRTMWSRRAQEY+AKINSGDLI+
Sbjct: 1 MVLRVPTAKANSVGMRKLAEPELVKKALDVLTGRARIKRTMWSRRAQEYEAKINSGDLIS 60
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ EVVRDL+R+++QPE+SYSERQLYE+AL+R+VREI++VN I+E EA+ LIE +L+
Sbjct: 61 VTEVVRDLYRSEAQPEQSYSERQLYEAALDRVVREISSVNKITETEALKLIEQSLAKS-P 119
Query: 175 KTEKSTSENQDKA 187
+ K+ +E + +A
Sbjct: 120 RRAKADAETEAEA 132
>gi|237710305|ref|ZP_04540786.1| transcription-repair coupling factor [Bacteroides sp. 9_1_42FAA]
gi|229455767|gb|EEO61488.1| transcription-repair coupling factor [Bacteroides sp. 9_1_42FAA]
Length = 1121
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+ +V+ HGVG + G + + +++ + V + I
Sbjct: 431 ELSQFEPGDFVVHIDHGVGRFGGLVRI-PNGNTTQEVIKLTYQNEDVVFVSIHSLHKISK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + S ++++ + +
Sbjct: 490 YKGKE------------GETPRLNKLGTGAWEKMKERTKSKIKDIARDLIKLYSQRKQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + + ++ + +A + ++ S
Sbjct: 538 GFSYSPDSFMQ---HELEASFIYEDTPDQLKATQDAKADMESDRP 579
>gi|163786687|ref|ZP_02181135.1| transcription-repair coupling factor [Flavobacteriales bacterium
ALC-1]
gi|159878547|gb|EDP72603.1| transcription-repair coupling factor [Flavobacteriales bacterium
ALC-1]
Length = 1096
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G K E + ++ L +
Sbjct: 404 AKKQAITLKELTNLEVGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKL-VYGERDVLYLS 462
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S+ + K S +++
Sbjct: 463 IHSLHKITK------------FNGKDGKPPKIYKLGSKAWKTLKQKTKSRVKEIAFNLIK 510
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Y+ + + + ++ + + I+ ++ S+
Sbjct: 511 LYAKRKLKKGFQYAPDSYMQ---HELEASFVYEDTPDQITSTADIKADMESERP 561
>gi|265751112|ref|ZP_06087175.1| transcription-repair coupling factor [Bacteroides sp. 3_1_33FAA]
gi|263238008|gb|EEZ23458.1| transcription-repair coupling factor [Bacteroides sp. 3_1_33FAA]
Length = 1121
Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+ +V+ HGVG + G + + +++ + V + I
Sbjct: 431 ELSQFEPGDFVVHIDHGVGRFGGLVRI-PNGNTTQEVIKLTYQNEDVVFVSIHSLHKISK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + S ++++ + +
Sbjct: 490 YKGKE------------GETPRLNKLGTGAWEKMKERTKSKIKDIARDLIKLYSQRKQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + + ++ + +A + ++ S
Sbjct: 538 GFSYSPDSFMQ---HELEASFIYEDTPDQLKATQDAKADMESDRP 579
>gi|237727824|ref|ZP_04558305.1| transcription-repair coupling factor [Bacteroides sp. D4]
gi|229434680|gb|EEO44757.1| transcription-repair coupling factor [Bacteroides dorei 5_1_36/D4]
Length = 1121
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+ +V+ HGVG + G + + +++ + V + I
Sbjct: 431 ELSQFEPGDFVVHIDHGVGRFGGLVRI-PNGNTTQEVIKLTYQNEDVVFVSIHSLHKISK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + S ++++ + +
Sbjct: 490 YKGKE------------GETPRLNKLGTGAWEKMKERTKSKIKDIARDLIKLYSQRKQEK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + + ++ + +A + ++ S
Sbjct: 538 GFSYSPDSFMQ---HELEASFIYEDTPDQLKATQDAKADMESDRP 579
>gi|153007315|ref|YP_001381640.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5]
gi|152030888|gb|ABS28656.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5]
Length = 1229
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 56/166 (33%), Gaps = 16/166 (9%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
A + G+ +V+ HG+ + + ++ G++ +F V+ L +PV K +
Sbjct: 504 AAAFRDLNEGDLVVHVEHGIARYLGLTKMQIRGVEGDFLVL-AYDGADRLYLPVAKLRQV 562
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
+ V + + R +E K+ + E++ +
Sbjct: 563 QKFTGAAPESV-----RLDRLGGQSFALRKARVKEQLLKMAA-------ELLDIYAARAA 610
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
P ++ E + E + + +AI + ++ +
Sbjct: 611 HPGHAFGE---PDEIFREFEAEFPWEETPDQAKAIADVLRDMRKQR 653
>gi|288870616|ref|ZP_06114718.2| putative transcriptional regulator [Clostridium hathewayi DSM
13479]
gi|288866520|gb|EFC98818.1| putative transcriptional regulator [Clostridium hathewayi DSM
13479]
Length = 187
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 64/166 (38%), Gaps = 10/166 (6%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE---FFVIAFDKDKMCLKVPVGKA 64
+ F+ +H+VY +G+ + I E+ + + + + +K + PV K
Sbjct: 16 SKEVKMFQVNDHVVYGNYGICVVKAIGSLEMDSVVKDRLYYTLEPLYSEKNTIYTPVDKE 75
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
MR + + ++ + ++ R Q Y + + + + +++ ++
Sbjct: 76 D--SMRCAITEQEAWKLIDGIQAQEMIQVADEKRAEQAYREIMRTNECSGWSRIIKTIYL 133
Query: 125 TDSQ-----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165
+ + + + A + + RE+AA + + + ++I
Sbjct: 134 KNRKRLAEGKRYTAKDDIYLRLAEDFLFRELAAALKVKKEDVESII 179
>gi|237785157|ref|YP_002905862.1| transcription-repair coupling factor [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758069|gb|ACR17319.1| transcription-repair coupling factor [Corynebacterium
kroppenstedtii DSM 44385]
Length = 1281
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 54/166 (32%), Gaps = 8/166 (4%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G+ +V+ HG+G +++E+ V A ++ M L+ K
Sbjct: 559 VDPLSLNPGDLVVHETHGIGRFVKMQERTVGKGAD-----ATRREYMVLEYAPSKRGGAA 613
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
++ + V G+ M + K + A++V+ + +
Sbjct: 614 DHLYVPMDSLDLLSRYVGGENPSLSKMGGSDWKNTKKKARAAVRDIAADLVQLYAKRQAA 673
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P ++S ++ + + + AI ++ ++
Sbjct: 674 PGYAFSPDTPWQREME---DNFPFTETEDQYNAIEAVKEDMEKPVP 716
>gi|158521716|ref|YP_001529586.1| transcription-repair coupling factor [Desulfococcus oleovorans
Hxd3]
gi|158510542|gb|ABW67509.1| transcription-repair coupling factor [Desulfococcus oleovorans
Hxd3]
Length = 1174
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ + G+ +V+ HG+G I++ V G+ +F +++ +D L + V +
Sbjct: 503 DLETLKQGDLVVHVDHGIGRYEGIRKVTVEGIANDFLLLS-YRDGDRLYLSVDRMDMA-- 559
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RK A E L G R R + IA+ + DL+
Sbjct: 560 RKYVGADDAEAPLLDKMGAKTWGRVKAKARKEA----------EKIAKELLDLYARRRVQ 609
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + IN + +++S +
Sbjct: 610 QGHGF--HPPGQWFSDFEAGFDFEETDDQLKVINEVLSDMASSTP 652
>gi|220919566|ref|YP_002494870.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
2CP-1]
gi|219957420|gb|ACL67804.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
2CP-1]
Length = 1233
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+ + + ++ G++ +F V+ L +PV K +
Sbjct: 505 RELNEGDLVVHVEHGIARYLGLTKMQIRGVEGDFLVL-AYDGADRLYLPVAKLRQVQKFT 563
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + + R +E K+ + E++ + P
Sbjct: 564 GASPETI-----RLDKLGGSSFALRKARVKEQLLKMAA-------ELLDIYAARAAHPGF 611
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+Y E + E + + +AI + ++
Sbjct: 612 AYPE---PDQLFREFEAEFPWEETPDQAKAIEDVVRDMRKGR 650
>gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
Length = 1147
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 61/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++ G+++V+ G+G I + V G+K ++ I +D L VP+
Sbjct: 483 TNAQKIDSFLDLNPGDYVVHENSGIGRYIGIDQITVDGIKKDYMKI-VYRDGDNLYVPID 541
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + +EA V+ + ++ + AK+ E++
Sbjct: 542 QMDKVQKYIGAEAEKVK------------LSRLGTQEWTKAKAKVRKEIEDMTEELINLY 589
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + +S+ +++ + + + +AI + ++ S
Sbjct: 590 AKREKIKGYKFSKDTVWQ---KEFEDKFPYQETDDQLKAIKDTKKDMESPR 637
>gi|227873322|ref|ZP_03991584.1| transcription-repair coupling factor [Oribacterium sinus F0268]
gi|227840837|gb|EEJ51205.1| transcription-repair coupling factor [Oribacterium sinus F0268]
Length = 1138
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 22/177 (12%)
Query: 3 FQQKRDAM------RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++K+ G+++V+ +HG+G I+ G+ ++ I D
Sbjct: 448 RRKKKQVESLHIGSLTELHKGDYVVHESHGIGIYEGIERIVTDGVSKDYLKI-LYGDGGN 506
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L +PV K G+ K + L + G Q+ +K+
Sbjct: 507 LYLPVNKLD--GIEKYAGKEAKAPKLNRLNGSE----------WQKTKSKVKGAVREIAK 554
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E++ + + + + +++ + + AI + ++ S+
Sbjct: 555 ELLALYAKRQEERGYPFGKDTVWQR---EFEEAFPYEETGDQLLAIEATKEDMESEK 608
>gi|260776195|ref|ZP_05885090.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607418|gb|EEX33683.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
BAA-450]
Length = 1153
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V ++ L VPV I
Sbjct: 479 ELKPGQPVVHIDHGIGRYIGLQTLEAGGMTTE-YVTLEYQNDAKLYVPVAALNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEESAP--LHKLGGEAWAKARRRAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGYKFALDRDQYATFKAGFPFEETDDQSMAINAVMSDMCQAKA 624
>gi|50084573|ref|YP_046083.1| transcription-repair coupling protein [Acinetobacter sp. ADP1]
gi|49530549|emb|CAG68261.1| transcription-repair coupling protein [Acinetobacter sp. ADP1]
Length = 1171
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 47/164 (28%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ +GVG + E+ EF + + + VPV I
Sbjct: 496 TELSIGAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADA-AKVYVPVTNLHLISRYS 554
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 555 GGDPD--------LAPLHKLGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 598
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 599 KPGFAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKP 642
>gi|257092702|ref|YP_003166343.1| transcription-repair coupling factor [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045226|gb|ACV34414.1| transcription-repair coupling factor [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 1141
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/179 (11%), Positives = 47/179 (26%), Gaps = 23/179 (12%)
Query: 2 TFQQKRDAMR-----QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
Q+K + G +V+ HG+ + ++ +EF + +
Sbjct: 458 AAQRKASVDNWLRDLTELKVGSPVVHEQHGIARYQGLVHLDLGEGDMEFLELHYAG-DAR 516
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VPV + I ++ L + K +
Sbjct: 517 LYVPVAQLHVISRYSGADPDAAP--LHTLGSPQ--------------WEKAKRRAALQAR 560
Query: 117 EVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L + ++ + + + AIN + ++ S
Sbjct: 561 DTAAELLALYALRAARQGHACQFKAHDYDAFADGFGFEETADQAAAINAVIEDMQSGRP 619
>gi|182417739|ref|ZP_02949057.1| transcriptional regulator, CarD family [Clostridium butyricum 5521]
gi|237668939|ref|ZP_04528923.1| transcriptional regulator, CarD family [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182378463|gb|EDT75994.1| transcriptional regulator, CarD family [Clostridium butyricum 5521]
gi|237657287|gb|EEP54843.1| transcriptional regulator, CarD family [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 166
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 8/165 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVA--GMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
F+ ++++Y +GV +T++ E++ + E++ + + + PV + MR
Sbjct: 1 MFKIDDYVIYGGNGVCKVTDVGVPEISRFDSEKEYYTLEPVYENGRIFAPVDN-EKVVMR 59
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI-----AIAEVVRDLHRT 125
K+ + + + R E+ I D I + + +
Sbjct: 60 KVLTRQEADDLIGTIPSVEVNWIDNMKERDHEFKDIIQHYDCIGFVKIIKTIIEKKREYS 119
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ S S+ + A + E+A +I + N IE L
Sbjct: 120 SDGKKLSVSDANYLKRAQEYLSGELAIALNIPKDTVNNYIENRLK 164
>gi|149371008|ref|ZP_01890603.1| transcription-repair coupling factor [unidentified eubacterium
SCB49]
gi|149355794|gb|EDM44352.1| transcription-repair coupling factor [unidentified eubacterium
SCB49]
Length = 1115
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G E + D+ L +
Sbjct: 418 AKKQAITLKELTNLEVGDYVTHIDHGIGKFGGLQKIDVEGKMQEAIKL-IYGDRDILYLS 476
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I G A + S ++ K + ++
Sbjct: 477 IHSLHKISK------------FNGKDGSAPKIYKLGSAAWKKLKQKTKARVKHIAFNLIE 524
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Q Y+ + + + ++ + A ++ ++ S+
Sbjct: 525 LYAKRRTQKGFQYNPDSYLQ---HELESSFMFEDTPDQSTATADVKADMESERP 575
>gi|261346027|ref|ZP_05973671.1| transcription-repair coupling factor [Providencia rustigianii DSM
4541]
gi|282565913|gb|EFB71448.1| transcription-repair coupling factor [Providencia rustigianii DSM
4541]
Length = 1148
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 16/160 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + E G++ E+ ++ + + L VPV I
Sbjct: 475 ELRPGQPVVHIEHGVGRYQGLTTLEAGGIQAEYLILTYAGND-KLYVPVSSLHLISRYAG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S K AE++ + ++ +
Sbjct: 534 GADENAP------------LHKLGSDSWGRARQKAAERVRDVAAELLDIYAQRAAKAGFA 581
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + + AIN + ++
Sbjct: 582 FKHD---KQQYQEFCHGFPFETTADQEMAINAVLSDMCQP 618
>gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9515]
gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9515]
Length = 1175
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/176 (11%), Positives = 61/176 (34%), Gaps = 21/176 (11%)
Query: 3 FQQKR----DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++KR + G++IV+ HG+G ++++ + G ++ VI + +
Sbjct: 477 RRRKRSVNSNINVNKINPGDYIVHKNHGIGQFLKLEKINITGESRDYLVIKYL--DGKIS 534
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + I + + ++ ++ W + + I ++
Sbjct: 535 VAADQLGSINRYRSTGK--------IMPKINKLGGAEWLKIKDKNRKIIKK----VAYDI 582
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + Y E ++ + + + A+ I++++ S
Sbjct: 583 LKLYAKREKLKGHIYPEDGPWQ---KELEESFPYQPTPDQLTAVKEIKIDMESDKP 635
>gi|315924903|ref|ZP_07921120.1| transcription-repair coupling factor [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621802|gb|EFV01766.1| transcription-repair coupling factor [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 1144
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 15/169 (8%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K+ G+++V+ HG+G I++ + + VI + L +PV +
Sbjct: 467 KKIETFTSLSAGDYVVHDIHGIGVYQGIEKMTIGETTKDMIVI-AYQGDDRLYLPVDQMG 525
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I + + T+ + A+ E++
Sbjct: 526 SIQAYIGTGGDRKPKV-----------NTLGRPDWAKTKARAKKAVEDMADELIALYAAR 574
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+P ++ + ++ + + I I+ ++
Sbjct: 575 RSRPGYAFGKDTSWQR---EFEDAFPYEETDDQLRCIEEIKADMEKPVP 620
>gi|325106020|ref|YP_004275674.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
gi|324974868|gb|ADY53852.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
Length = 1116
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ + G+ I + HGVG +++ EV G + E + + + + L V + I
Sbjct: 432 ELRDLKPGDFITHIDHGVGKYGGLEKVEVNGKEQEMIRLIYADNDL-LYVNINSLNRISK 490
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
G + + + ++++ SQ
Sbjct: 491 YSG------------KDGHTPKMNKLGTEAWDKLKKTTKKKVKDIARDLIKLYAVRKSQV 538
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + N + ++ + +A ++ ++ S+
Sbjct: 539 GFAFSPDTYLQ---NELEASFIYEDTPDQEKATADVKKDMESEHP 580
>gi|329767249|ref|ZP_08258776.1| transcription-repair coupling factor [Gemella haemolysans M341]
gi|328836916|gb|EGF86563.1| transcription-repair coupling factor [Gemella haemolysans M341]
Length = 1183
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 17/173 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++ Q G++IV+ +HG+G I+ EV G+ +F I + V +
Sbjct: 471 TNSEKIRNYQELNVGDYIVHVSHGIGLYEGIENVEVGGVYKDFLKI-VYDGGDIIYVDIN 529
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I S + ++ + K S I ++ DL
Sbjct: 530 NMNYIQKYTASTDNRKPAL---------------NKLGTKNWQKTKSRVRKEIEDISEDL 574
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + E S + ++ + A + + +A I+ ++ +
Sbjct: 575 IKLYIKRELSSGYAYSLDGSMQSEFEADFAYTPTDDQVKATEEIKRDMEKQRP 627
>gi|2073486|emb|CAA72474.1| transcription repair coupling factor [Rickettsia prowazekii]
Length = 989
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ + GE +V+ HG+G +++ ++ G +F I + + L V
Sbjct: 311 TNKKLKNILLELDNLKEGEFVVHKDHGIGQFLKLEAFKIQGKLHDFLKILYFGND-KLYV 369
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A ++ W++ + +I L I
Sbjct: 370 PVENIEVIKKYGSDNAELN-----------KLGSVAWNKSKAKLKNRIKEISLHLIQIAA 418
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + +L A ++ + + AIN I +L++
Sbjct: 419 K-------RKLNISTPIELDLEAYDKFCANFPFSETEDQLTAINDIREDLTNG 464
>gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna
ACS-171-V-Col3]
gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna
ACS-171-V-Col3]
Length = 1168
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 17/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+++V+ HG+G I++ +V G++ ++ VI K L +P + +
Sbjct: 500 SDLNIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVI-QYKANDRLMIPTDQMNLVQKYI 558
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
KL AK ++ E+ DL S+ K
Sbjct: 559 GGGNVKKPSLNKLSGND---------------WAKAKQKAKKSVDEMADDLVELYSKRAK 603
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ R + S+ +I I+ ++ S
Sbjct: 604 LKGYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKSDMESDRP 647
>gi|302871262|ref|YP_003839898.1| transcription-repair coupling factor [Caldicellulosiruptor
obsidiansis OB47]
gi|302574121|gb|ADL41912.1| transcription-repair coupling factor [Caldicellulosiruptor
obsidiansis OB47]
Length = 1143
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+ +V+ +G+G ++ V G E +V + L VP I
Sbjct: 480 EDLKPGDFVVHRTYGIGKFLGFEKITVEGTTKE-YVKLEYANSSYLYVPTTNLDMIEKY- 537
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
V+ L + + K ++ V +DL ++ +
Sbjct: 538 -IGTDDVQPKLSRLGSQE--------------WQKQKQKVRKSLEIVAKDLVELYAKRQL 582
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + + + +AI I+ ++ S+
Sbjct: 583 GQGFKFSKDTVWQKEFEEKFPYTETEGQLQAIEEIKRDMESEKP 626
>gi|212694030|ref|ZP_03302158.1| hypothetical protein BACDOR_03556 [Bacteroides dorei DSM 17855]
gi|212663562|gb|EEB24136.1| hypothetical protein BACDOR_03556 [Bacteroides dorei DSM 17855]
Length = 1145
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G+ +V+ HGVG + G + + +++ + V + I
Sbjct: 455 ELSQFEPGDFVVHIDHGVGRFGGLVRI-PNGNTTQEVIKLTYQNEDVVFVSIHSLHKISK 513
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+ + + ++ + S ++++ + +
Sbjct: 514 YKGKE------------GETPRLNKLGTGAWEKMKERTKSKIKDIARDLIKLYSQRKQEK 561
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SYS + + + ++ + +A + ++ S
Sbjct: 562 GFSYSPDSFMQ---HELEASFIYEDTPDQLKATQDAKADMESDRP 603
>gi|94971575|ref|YP_593623.1| transcription-repair coupling factor [Candidatus Koribacter
versatilis Ellin345]
gi|94553625|gb|ABF43549.1| transcription-repair coupling factor [Candidatus Koribacter
versatilis Ellin345]
Length = 1182
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 56/166 (33%), Gaps = 15/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + +++V+ HG+G +KE + F+I + L VP+ + I
Sbjct: 504 SDFRDLTINDYVVHVEHGIGQYQGLKEIAQGDGEPAEFMILEYAEGARLYVPLTRLDLIQ 563
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ SE G + +++ + A++ E+++ +
Sbjct: 564 KYRSSE------------GVKPALNRLGTQQWAKTKARVKKAMKDMADELLKLYAARKTA 611
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S +E + + AI + ++ S +
Sbjct: 612 KGHAFSATGQFER---EFDDAFEFNETEDQENAIRDVRQDMESDTP 654
>gi|91788579|ref|YP_549531.1| transcription-repair coupling factor [Polaromonas sp. JS666]
gi|91697804|gb|ABE44633.1| transcription-repair coupling factor [Polaromonas sp. JS666]
Length = 1201
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 36/194 (18%)
Query: 1 MTFQ---QKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKL----- 43
+T + +K++ G+ +V+ AHG+G + ++ K
Sbjct: 493 VTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHSAHGIGRYRGLLNLDLGQDKNPDGSP 552
Query: 44 --EFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQ 101
+ F+ DK L VPV + I A E L +
Sbjct: 553 SLQEFLHLEYADKATLYVPVSQLHLISRYTGVSAE--EAPLHRLGSGQ------------ 598
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPE 160
K I + +L ++ + + + +
Sbjct: 599 --WEKAKRKAAEQIRDSAAELLNIYARRAAREGHAFRYSPGDYEAFANDFGFEETADQRA 656
Query: 161 AINLIEVNLSSKSS 174
AI+ + ++ S
Sbjct: 657 AIHAVIQDMISPRP 670
>gi|325335423|gb|ADZ11697.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-GD]
Length = 1097
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G++I + HG+G + + G E F + K+ L V + I
Sbjct: 430 DLMSLKVGDYIAHIDHGIGKFMGLVKVNNGGKTQECFKL-TYKNGDLLYVSIHALHKISK 488
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+E GK + S + K + ++++ + +
Sbjct: 489 YNGAE------------GKEITLSKIGSPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAK 536
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+Y+ + N + ++ + +A ++ ++ +
Sbjct: 537 GFAYTPDTYLQ---NELEASFLYEDTPDQEKATLDVKRDMEA 575
>gi|307710364|ref|ZP_07646805.1| transcription-repair coupling factor [Streptococcus mitis SK564]
gi|307618956|gb|EFN98091.1| transcription-repair coupling factor [Streptococcus mitis SK564]
Length = 1169
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDEDQDAFDDA---FPYVETDDQLRSIEEIKRDMQASQP 633
>gi|326334855|ref|ZP_08201056.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325692892|gb|EGD34830.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 1108
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 17/174 (9%), Positives = 52/174 (29%), Gaps = 19/174 (10%)
Query: 4 QQKRDA---MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ G+++ + HG+G +++ EV G + E + D+ L V
Sbjct: 416 AKKQAITLKELHQLTIGDYVTHIDHGIGKFAGLQKIEVDGRQQEAIKL-IYGDRDVLYVS 474
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I G + S + + + +++
Sbjct: 475 IHSLHKISKYNG------------KDGAPPKLYKLGSSAWKTLKQRTKARVKQIAFNLIQ 522
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ + + ++ + +A ++ ++ S
Sbjct: 523 LYAKRKESVGYAFAPDSFLQ---KELEASFIYEDTPDQSKATLEVKQDMESARP 573
>gi|268318293|ref|YP_003292012.1| transcription-repair coupling factor [Rhodothermus marinus DSM
4252]
gi|262335827|gb|ACY49624.1| transcription-repair coupling factor [Rhodothermus marinus DSM
4252]
Length = 1112
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 52/163 (31%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q + G+++V+ G+G ++ + G + E V D L V V +
Sbjct: 430 QNLQPGDYVVHVDFGIGQFAGLQRITIRGKQQE-VVRLHYADGDVLYVSVNALHKLHRY- 487
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + L + ++ A+ +++R + +
Sbjct: 488 -TGREGHQPRLTKLGSGQ----------WEKVKARTKKRVKDIARDLIRLYAKRKASRGF 536
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S +++ + ++ + A ++ ++
Sbjct: 537 AFSPDTVWQREME---AAFEYEDTPDQAAAAEAVKRDMEQPVP 576
>gi|28197977|ref|NP_778291.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
gi|182680603|ref|YP_001828763.1| transcription-repair coupling factor [Xylella fastidiosa M23]
gi|28056037|gb|AAO27940.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
gi|182630713|gb|ACB91489.1| transcription-repair coupling factor [Xylella fastidiosa M23]
Length = 1195
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG ++ V+GM EF V L VPV + I
Sbjct: 526 ELSEGAPIVHEDHGVGRYRKLITMNVSGMPGEF-VEIEYAKGDRLYVPVAQLHLISRYSG 584
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+ WS+ ++ K+ D+ A ++ + +
Sbjct: 585 ASPETAP--LHSLGGE------QWSKAKRKAAEKVR--DVAAELLEIQARRQARAGLALR 634
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + + + AI +L S
Sbjct: 635 I-DRTM----YEPFAAGFPFEETPDQLAAIETTLRDLQSSQP 671
>gi|15836650|ref|NP_297338.1| transcription-repair coupling factor [Xylella fastidiosa 9a5c]
gi|9104811|gb|AAF82858.1|AE003858_12 transcription-repair coupling factor [Xylella fastidiosa 9a5c]
Length = 1193
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG ++ V+GM EF V L VPV + I
Sbjct: 524 ELSEGAPIVHEDHGVGRYRKLITMNVSGMPGEF-VEIEYAKGDRLYVPVAQLHLISRYSG 582
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+ WS+ ++ K+ D+ A ++ + +
Sbjct: 583 ASPETAP--LHSLGGE------QWSKAKRKAAEKVR--DVAAELLEIQARRQARAGLALR 632
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + + + AI +L S
Sbjct: 633 I-DRTM----YEPFAAGFPFEETPDQLAAIETTLRDLQSSQP 669
>gi|71275507|ref|ZP_00651793.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
gi|71900755|ref|ZP_00682876.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
gi|170729284|ref|YP_001774717.1| transcription-repair coupling factor [Xylella fastidiosa M12]
gi|71163807|gb|EAO13523.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
gi|71729485|gb|EAO31595.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
gi|167964077|gb|ACA11087.1| transcription-repair coupling factor [Xylella fastidiosa M12]
Length = 1193
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG ++ V+GM EF V L VPV + I
Sbjct: 524 ELSEGAPIVHEDHGVGRYRKLITMNVSGMPGEF-VEIEYAKGDRLYVPVAQLHLISRYSG 582
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+ WS+ ++ K+ D+ A ++ + +
Sbjct: 583 ASPETAP--LHSLGGE------QWSKAKRKAAEKVR--DVAAELLEIQARRQARAGLALR 632
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + + + AI +L S
Sbjct: 633 I-DRTM----YEPFAAGFPFEETPDQLAAIETTLRDLQSSQP 669
>gi|71899709|ref|ZP_00681861.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
gi|71730504|gb|EAO32583.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
Length = 1195
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG ++ V+GM EF V L VPV + I
Sbjct: 526 ELSEGAPIVHEDHGVGRYRKLITMNVSGMPGEF-VEIEYAKGDRLYVPVAQLHLISRYSG 584
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G+ WS+ ++ K+ D+ A ++ + +
Sbjct: 585 ASPETAP--LHSLGGE------QWSKAKRKAAEKVR--DVAAELLEIQARRQARAGLALR 634
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + + + AI +L S
Sbjct: 635 I-DRTM----YEPFAAGFPFEETPDQLAAIETTLRDLQSSQP 671
>gi|225850639|ref|YP_002730873.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
mfd) [Persephonella marina EX-H1]
gi|225645015|gb|ACO03201.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
mfd) [Persephonella marina EX-H1]
Length = 947
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 18/171 (10%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+K D Q + G++I++ G+G I+ +E+ G K +F ++ + + V
Sbjct: 284 SKKVDLEIQPIKEGDYIIHEDFGIGIFRGIETREIRGKKYDFMILEYAN-NEKVYVSYLH 342
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I K S ++R + K+ + ++V+
Sbjct: 343 FDKIHRYKASGVITLDRIGGTS--------------WRNLKRKVKNSLKKIAFQLVKLYT 388
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A R + + + +AI I+ +LSS
Sbjct: 389 ERKQIRRDPLVVENDLIEA---FERSFPYIETPDQLKAIKDIKRDLSSDRP 436
>gi|312623038|ref|YP_004024651.1| transcription-repair coupling factor [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203505|gb|ADQ46832.1| transcription-repair coupling factor [Caldicellulosiruptor
kronotskyensis 2002]
Length = 1141
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+ +V+ +G+G ++ V G E +V + L VP I
Sbjct: 480 EDLKPGDFVVHRTYGIGKFLGFEKITVEGTTKE-YVKLEYANSSYLYVPTTNLDVIEKYI 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + S+ Q+ K+ + ++V +
Sbjct: 539 GT------------DDVQPKLSKLGSQEWQKQKQKVRKSLELVAKDLVELYAKRQLGKGF 586
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ L++ + + + +AI I+ ++ S+
Sbjct: 587 KFSKDTLWQ---KEFEEKFPYTETEGQLQAIEEIKRDMESEKP 626
>gi|114565647|ref|YP_752801.1| transcription-repair coupling factor [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114336582|gb|ABI67430.1| Transcription-repair coupling factor - superfamily II helicase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 1073
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 21/178 (11%), Positives = 66/178 (37%), Gaps = 22/178 (12%)
Query: 3 FQQKRDAMRQG------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++K + + G+++V+ ++G+G + + E +G+ E+ ++ +
Sbjct: 405 SRKKHKHKGEERILLEDLKLGDYVVHESYGIGIFRGVSQVENSGITREYILLEYAGTD-R 463
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L +P+ K + S K + + K+
Sbjct: 464 LYLPLEKLDLLFKYTSSG------------DKEPRLNKLGGSAWERTRKKVAQSIQDLAE 511
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ +S+ ++S ++S + E + + +AIN ++ ++ ++
Sbjct: 512 DLLQLYAHRESREGYAFSPDTPWQS---QFEDEFPFRETPDQLKAINEVKKDMETRRP 566
>gi|218666669|ref|YP_002424872.1| transcription-repair coupling factor [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218518882|gb|ACK79468.1| transcription-repair coupling factor [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 1149
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 15/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ + + +G+G + + + +V+ + + VP I
Sbjct: 477 ELQPGDAVTHEEYGIGRFQGMATPFASQGDINEYVVLEYANGDLVYVPADHLDRIARY-- 534
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E L + S ++ AK + A +E++ R ++ ++
Sbjct: 535 VGNGATEPVLSRL----------GSNHWEKVKAKARQKAVDAASELLDIYARRAARTGRA 584
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + A V + + +AI+ + +++S
Sbjct: 585 FPE---PDDAYWEFVSRFPFEETPDQQQAIDAVIADMTSPHP 623
>gi|198282679|ref|YP_002219000.1| transcription-repair coupling factor [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198247200|gb|ACH82793.1| transcription-repair coupling factor [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 1116
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 15/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ + + +G+G + + + +V+ + + VP I
Sbjct: 444 ELQPGDAVTHEEYGIGRFQGMATPFASQGDINEYVVLEYANGDLVYVPADHLDRIARY-- 501
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
E L + S ++ AK + A +E++ R ++ ++
Sbjct: 502 VGNGATEPVLSRL----------GSNHWEKVKAKARQKAVDAASELLDIYARRAARTGRA 551
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + A V + + +AI+ + +++S
Sbjct: 552 FPE---PDDAYWEFVSRFPFEETPDQQQAIDAVIADMTSPHP 590
>gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
QYMF]
gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
QYMF]
Length = 1174
Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+H+V+ HG+G I+E V G+K ++ I + + L VP + I
Sbjct: 501 DLQVGDHVVHEGHGIGKYIGIEELSVEGIKKDYIKIRYSGEDH-LYVPTDQMNLIQKYIG 559
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S+ + + + K+ E+++ +
Sbjct: 560 SDK------------GSPKLNKLGGVEWVKTKGKVKKAIEDMAEELLKLYAERRRNKGHA 607
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + + ++I ++ ++ + +
Sbjct: 608 FGNDGEWQKQFEDL---FPYEETPDQLKSIEEVKADMEQEGA 646
>gi|331265444|ref|YP_004325074.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
gi|326682116|emb|CBY99732.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
Length = 1167
Score = 87.9 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIQGIHRD-YVSVQYQNGDQISIPVEQIQLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + ++ K+ S ++++ +
Sbjct: 547 S------------DGKPPKLNKLNDGHFKKAKQKVKSQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + V + + +I I+ ++
Sbjct: 595 FSADDDDQHTFDD---AFPYVETDDQLRSIEEIKRDMQDSHP 633
>gi|328950754|ref|YP_004368089.1| transcription-repair coupling factor [Marinithermus hydrothermalis
DSM 14884]
gi|328451078|gb|AEB11979.1| transcription-repair coupling factor [Marinithermus hydrothermalis
DSM 14884]
Length = 985
Score = 87.9 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 56/167 (33%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+++++P HG+G I+ +EV G+K ++ V+ + L +P+ + +
Sbjct: 323 ADPDALSEGDYLIHPEHGIGRFLGIETREVLGVKRDYLVLQYAG-DGRLYLPIEQLSLLR 381
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ SR + A+ + + + L ++
Sbjct: 382 RHPGTTDDPPRL----------------SRLGKNEWARAKAKAQKDAEALAQRLLVLHAK 425
Query: 129 PEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKSS 174
E + + ++ + + + A+ +L +
Sbjct: 426 REATPGYAFTPLPDWDPLIEKNFPYTLTPDQKRALEETLKDLETPRP 472
>gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
Length = 1165
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 2 TFQQKRDAMRQ---------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
T ++KR + G ++V+ +G+G I++ +V G+ ++ I +
Sbjct: 480 TKRRKRTVKIKNADKIKSFTELEIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAG 539
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VPV + + ++ K
Sbjct: 540 GD-TLFVPVEQLDLVQKYV----------------GPTDNPPKLNKLGGSEWLKAKRKAK 582
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSS 171
A+ ++ +DL + ++ + ++ + + + + I I+ ++
Sbjct: 583 KAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEK 642
Query: 172 KSS 174
Sbjct: 643 DRP 645
>gi|317495443|ref|ZP_07953812.1| transcription-repair coupling factor [Gemella moribillum M424]
gi|316914502|gb|EFV35979.1| transcription-repair coupling factor [Gemella moribillum M424]
Length = 1185
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 17/173 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++ Q G++IV+ +HG+G I+ EV G+ +F I + V +
Sbjct: 471 TNSEKIRNYQELNIGDYIVHISHGIGLYEGIENIEVNGVHKDFLKI-VYDGGDVIYVDIN 529
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I S + + KL K ++ + I ++ DL
Sbjct: 530 NMNYIQKYTASTDNRKPQLNKLGTKK---------------WQQVKNKVRREIEDISEDL 574
Query: 123 HRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + E S ++S+ + + + + + +A I+ ++ +
Sbjct: 575 IKLYIKRELSSGYAYSFDSSLQQEFEDDFSFIPTDDQLKATEEIKRDMEKQRP 627
>gi|313159822|gb|EFR59178.1| transcription-repair coupling factor [Alistipes sp. HGB5]
Length = 1108
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 50/166 (30%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A R G+++V+ HGVG + + G E + KD L V V I
Sbjct: 423 AELNQLRPGDYVVHIDHGVGRFDGLVKINENGKAHEAIKL-VYKDGDVLFVNVHSLHRIS 481
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
K G+ + + Q+ E++ + +
Sbjct: 482 RYKSG------------DGEPPKVYKLGNGAWQKLKNATKKAVKDISRELIALYAKRKAS 529
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + ++ + + ++ ++ S
Sbjct: 530 KGFAFTPDSYLQ---HELEASFQWEDTPDQQTTVAAVKKDMESDQP 572
>gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
Length = 1168
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 17/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+++V+ HG+G I++ +V G++ ++ VI K L +P + +
Sbjct: 500 SDLNIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVI-QYKANDRLMIPTDQMNLVQKYI 558
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
KL AK ++ E+ DL S+ K
Sbjct: 559 GGGNVKKPSLNKLSGND---------------WAKAKQKAKKSVDEMADDLVELYSKRAK 603
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ R + S+ +I I+ ++ S
Sbjct: 604 LKGYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADMESDRP 647
>gi|291296005|ref|YP_003507403.1| transcription factor CarD [Meiothermus ruber DSM 1279]
gi|290470964|gb|ADD28383.1| transcription factor CarD [Meiothermus ruber DSM 1279]
Length = 987
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 15/167 (8%), Positives = 57/167 (34%), Gaps = 16/167 (9%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ G+++++P HG+G ++ +EV G + ++ V+ + + + +PV + +
Sbjct: 324 ETDPGALAVGDYLIHPEHGIGQYLGLETREVLGAQRDYLVLRYAG-EARMYLPVEQLPLL 382
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
+ ++ + K ++ + ++
Sbjct: 383 KRHPGTTDD------------PPALSSLGKGEWKRSREKAAKDAEELAQRLLVLHAKREA 430
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P +++ ++ + + + + +A+ +L +
Sbjct: 431 TPGRAFGPLPEWDV---LIEQNFPFELTPDQRKALEETLRDLEAPRP 474
>gi|306826192|ref|ZP_07459527.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|304431668|gb|EFM34649.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
071 str. 73H25AP]
Length = 1167
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 59/173 (34%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T +R G+++V+ HG+G I+ E+ G+ + +V ++ + +PV
Sbjct: 477 TSNAERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPV 535
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + S GKA + ++ K+ + ++++
Sbjct: 536 EQIQLLSKYVSS------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKL 583
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + A + V + + +I I+ ++
Sbjct: 584 YSERSQLKGFAFSADDDDQHAFDDA---FPYVETDDQLRSIEEIKRDMQDSHP 633
>gi|256828791|ref|YP_003157519.1| transcription-repair coupling factor [Desulfomicrobium baculatum
DSM 4028]
gi|256577967|gb|ACU89103.1| transcription-repair coupling factor [Desulfomicrobium baculatum
DSM 4028]
Length = 1146
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 18/164 (10%), Positives = 50/164 (30%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+G+ +V+ +G+ + + + ++ ++ + L +PV + + K
Sbjct: 476 DELESGDLLVHRDYGLCRFGGLHRIKFGDVANDYLLL-QYDGEDRLYLPVDRLGQVQRYK 534
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
AL + A +K +IA++ RDL + +
Sbjct: 535 G--PDGAAPALDRLGSAA--------------WSKARERTRQSIAKIARDLVEMYAFRKI 578
Query: 132 SYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + +AI + ++
Sbjct: 579 AKGFQYNPISELYWEFEASFGFEETRDQEKAIADVLADMEKPEP 622
>gi|254448008|ref|ZP_05061472.1| transcription-repair coupling factor [gamma proteobacterium
HTCC5015]
gi|198262434|gb|EDY86715.1| transcription-repair coupling factor [gamma proteobacterium
HTCC5015]
Length = 1162
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G +V+ GVG ++ + ++ EF + + + L VPV +
Sbjct: 486 NSLADLSIGAPVVHEHSGVGRYLGLQTLTMGEIEQEFLTLEYANED-KLYVPVSDLHLVT 544
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + RA + +A + +H +
Sbjct: 545 RFSGASPESAP-----LHKLGSDTWGKQKARA--------AKQARDVAAELLAIHARRAA 591
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q+ + N + + + AI + +L
Sbjct: 592 RQGRSF--QIPQPEYNLFASDFPFEETPDQLNAIEAVLDDLVKIQP 635
>gi|254427874|ref|ZP_05041581.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
gi|196194043|gb|EDX89002.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
Length = 1159
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 18/159 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G +V+ HGVG + EV + EF ++ + L VPV I +
Sbjct: 487 VGSPVVHLEHGVGRYLGLTHMEVHRQQHEFLLLEYAGGD-KLYVPVSSLHLISRYGGGDT 545
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
+ R + + + K AE++ R ++ E +
Sbjct: 546 APLNRL--------------GTEQWTKARQKAAEKIHDVAAELLNTYARREA-REGRQFD 590
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + +R + + AI + ++ S
Sbjct: 591 VDL--NDYDRFSAAFPFEETPDQQAAIASVVADMQSSQP 627
>gi|17232707|ref|NP_489255.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
gi|17134354|dbj|BAB76914.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
Length = 1185
Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 61/176 (34%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ A +Q R G+++V+ +HG+G +++ + ++ V+ + L+
Sbjct: 498 RKRRQAASKQVDPNKLRQGDYVVHRSHGIGKFVKLESLTINDETRDYIVVQYA--DGLLR 555
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + KA M + ++ ++
Sbjct: 556 VAADQVGSLSR------------FRTTGDKAPELHKMTGKAWDNTKNRVRKAIKKLAVDL 603
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ Q +Y + ++ + + + +A+ ++ ++ S
Sbjct: 604 LKLYAARSQQQGFAYPQDMPWQEEME---DSFPYQATTDQLKAVQDVKRDMESDRP 656
>gi|325122057|gb|ADY81580.1| transcription-repair coupling protein [Acinetobacter calcoaceticus
PHEA-2]
Length = 1153
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + ++ + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EEAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFGFEVDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|293608212|ref|ZP_06690515.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828785|gb|EFF87147.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 1153
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG + + G EF + + ++ + VPV I
Sbjct: 480 TELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYA-EEAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFGFEVDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|289208374|ref|YP_003460440.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix]
gi|288944005|gb|ADC71704.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix]
Length = 1157
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
G +V+ GVG ++ + +G EF + + L VPV I
Sbjct: 480 QNLSDLTIGAPVVHEEQGVGRYLGLQTLDFSGQPSEFLTLEYAD-GAKLYVPVSSLHLIS 538
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
++A L + + W+R ++ K +A + ++H +
Sbjct: 539 RYTGADAEHAP--LHRLGSE------QWNRARRKAAEKAR-----DVAAELLEVHARRAA 585
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + E + + + +AI+ + +++
Sbjct: 586 KQGTAFATETPE--YHAFAAAFPFEETADQLQAIDAVLTDMADTRP 629
>gi|49475638|ref|YP_033679.1| transcription repair coupling factor [Bartonella henselae str.
Houston-1]
gi|49238445|emb|CAF27673.1| Transcription repair coupling factor [Bartonella henselae str.
Houston-1]
Length = 1168
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K + + +G+ +V+ HG+G +K AG+ + I + + L
Sbjct: 482 PKRRKHNKNFISEIAALNSGDIVVHIDHGIGQFVGLKTITTAGILRDCLEIKYAGGDL-L 540
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + + L + G A Q ++ L +
Sbjct: 541 FLPVENIELLSRY---GSEGTDVTLDKLGGVA----------WQARKTRLKKHLLEMANQ 587
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R ++ + + V + + +AI+ + +L+S
Sbjct: 588 LIRIAAERATRSAPALLPPIGP---FDEFVACFPYEETEDQMDAIDAVLDDLASGKP 641
>gi|299770361|ref|YP_003732387.1| transcription-repair coupling factor [Acinetobacter sp. DR1]
gi|298700449|gb|ADI91014.1| transcription-repair coupling factor [Acinetobacter sp. DR1]
Length = 1153
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 47/164 (28%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIDAPVVHIDHGVGRYAGLVTLAIEGQDYEFLQLNYA-EGAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGSDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFGFELDQSLYMQFASGFAYEETLDQANAIEATLHDMQQARP 626
>gi|305681933|ref|ZP_07404737.1| transcription-repair coupling factor [Corynebacterium matruchotii
ATCC 14266]
gi|305658406|gb|EFM47909.1| transcription-repair coupling factor [Corynebacterium matruchotii
ATCC 14266]
Length = 1238
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 58/175 (33%), Gaps = 26/175 (14%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEV-AGMK---LEFFVIAFD-----KDKMCLKV 59
++G+++V+ HG+G + E+ + G + E+ V+ + + L V
Sbjct: 515 VDPLALKSGDYVVHETHGIGRFVRMTERTITMGEETSRREYIVLEYAPTRRGQPADQLYV 574
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P+ + V G+ M + K + +E+V
Sbjct: 575 PMDSLDLLSRY--------------VGGEKPTLSKMGGSDWKNTKKKARAAVREIASELV 620
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + P +++ ++ + V + + AI ++ ++
Sbjct: 621 ELYAKRATAPGHAFAPDSPWQ---QELEDNFPFVETEDQMAAIAAVKQDMEQPVP 672
>gi|225022992|ref|ZP_03712184.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii
ATCC 33806]
gi|224944215|gb|EEG25424.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii
ATCC 33806]
Length = 1223
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 58/175 (33%), Gaps = 26/175 (14%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEV-AGMK---LEFFVIAFD-----KDKMCLKV 59
++G+++V+ HG+G + E+ + G + E+ V+ + + L V
Sbjct: 500 VDPLALKSGDYVVHETHGIGRFVRMTERTITMGEETSRREYIVLEYAPTRRGQPADQLYV 559
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P+ + V G+ M + K + +E+V
Sbjct: 560 PMDSLDLLSRY--------------VGGEKPTLSKMGGSDWKNTKKKARAAVREIASELV 605
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + P +++ ++ + V + + AI ++ ++
Sbjct: 606 ELYAKRATAPGHAFAPDSPWQ---QELEDNFPFVETEDQMAAIAAVKQDMEQPVP 657
>gi|88808865|ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
Length = 1180
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 19/175 (10%), Positives = 60/175 (34%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G ++++ ++G ++ V+ + L+V
Sbjct: 473 RRRKAASRTVDPNKMRPGDFVVHRNHGIGRFQKLEKLAISGEVRDYLVVQYA--DGILRV 530
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + + + RA + K+ ++V
Sbjct: 531 AADQLGSLGRYRANSDAPPQ-----LSKMGGSAWVKAKERASKALRKV-------ALDLV 578
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P ++ +++ + + + +A ++ ++
Sbjct: 579 KLYAERHQAPGFAFPVDGPWQT---ELEESFPYEPTPDQLKATAEVKRDMEKSQP 630
>gi|327188302|gb|EGE55521.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
CNPAF512]
Length = 1167
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G G +V+ HG+G +K E AG + + + L +PV +
Sbjct: 496 AEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 554
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G A Q AK+ L ++R ++
Sbjct: 555 RY---GGEGTDAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTR 601
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +L +
Sbjct: 602 HAPVLTTPDGL---YDEFSARFPYDETEDQDNAIEAVRSDLGAGRP 644
>gi|319408599|emb|CBI82254.1| transcription repair coupling factor [Bartonella schoenbuchensis
R1]
Length = 1166
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 62/177 (35%), Gaps = 21/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ ++K + +G+ +V+ HG+G +K AG+ + I + + L
Sbjct: 480 SKRRKHNTHFISEIATLNSGDIVVHVDHGIGQFIGLKTIMTAGILRDCLEINYA-EGDRL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + + L + G A W R A++ L +
Sbjct: 539 FLPVENIELLSRY---GSEDTDVTLDKLGGVA------WQTR----KARLKKHLLKIAGQ 585
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R ++ + S + V + + +AI+ + +L++
Sbjct: 586 LIRIAAERATRSAPALSPPIGL---FDEFVACFPYEETEDQIDAIDAVLGDLAAGKP 639
>gi|258405811|ref|YP_003198553.1| transcription-repair coupling factor [Desulfohalobium retbaense DSM
5692]
gi|257798038|gb|ACV68975.1| transcription-repair coupling factor [Desulfohalobium retbaense DSM
5692]
Length = 1153
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K + +TGE +V+ +G+ ++ + ++ V+ + L VP +
Sbjct: 477 KGLSSFDDLQTGELLVHRDYGLSRFGGLQRLQADQAGQDYLVLEYADSD-KLYVPADRLN 535
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + AL + G + Q+ ++ E+VR
Sbjct: 536 LVQRYQGG--EGAAPALDRLGGTS----------WQKTTKRVRKAIEQIAHELVRMYAYR 583
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + + + I+ + ++ S
Sbjct: 584 RVAKGFAYS---AADELYREFEASFGFAETPDQEKVISDVLEDMDSPEP 629
>gi|206603476|gb|EDZ39956.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
'5-way CG']
Length = 1154
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
GE +V+ HG+G +KE V + EFFV+ +D L VPV A + +
Sbjct: 481 LNEGEPVVHLQHGIGLYRGLKEIMVGSIPGEFFVVE-YRDLEKLYVPVDHADLLQPYRG- 538
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
L + G+ RT R + + I++ + DL+
Sbjct: 539 -PEGSTPTLDRIGGQ-TWNRTRQKVRKE----------IEKISQDLVDLYARRKTVSGHS 586
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + + + +A + ++ + +
Sbjct: 587 FSSDLL--LVREFENSFPYDLTPDQEDAWRAVCEDMEAPTP 625
>gi|313207139|ref|YP_004046316.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
15868]
gi|312446455|gb|ADQ82810.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
15868]
Length = 1119
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G++I + HG+G + + G E F + K+ L V + I
Sbjct: 430 DLMSLKVGDYIAHIDHGIGKFMGLVKVNNGGKTQECFKL-TYKNGDLLYVSIHALHKISK 488
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+E GK + S + K + ++++ + +
Sbjct: 489 YNGAE------------GKEITLSKIGSPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAK 536
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+Y+ + N + ++ + +A ++ ++ +
Sbjct: 537 GFAYTPDTYLQ---NELEASFLYEDTPDQEKATLDVKRDMEA 575
>gi|209549326|ref|YP_002281243.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209535082|gb|ACI55017.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 1167
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G G +V+ HG+G +K E AG + + + L +PV +
Sbjct: 496 AEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 554
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
E L + G A Q AK+ L ++R ++
Sbjct: 555 RY---GGEGTEAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTR 601
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI+ + +L +
Sbjct: 602 HAPMLTTPDGL---YDEFAARFPYDETEDQDNAIDAVRSDLGAGRP 644
>gi|124516600|gb|EAY58108.1| transcription-repair coupling factor [Leptospirillum rubarum]
Length = 1153
Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
GE +V+ HG+G +KE V + EFFV+ +D L VPV +A + +
Sbjct: 480 LNEGEPVVHLQHGIGLYRGLKEIMVGSIPGEFFVVE-YRDFEKLYVPVDQADLLQPYRGP 538
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
E G A + + K+ ++ I++ + DL+
Sbjct: 539 E------------GSAPTLDRIGGQTWNRTRQKVR-KEIEKISQDLVDLYARRKTVSGHS 585
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + + + +A + ++ + +
Sbjct: 586 FSADLL--LVREFENSFPYDLTPDQEDAWRAVSEDMEAPTP 624
>gi|262278954|ref|ZP_06056739.1| transcription-repair coupling factor [Acinetobacter calcoaceticus
RUH2202]
gi|262259305|gb|EEY78038.1| transcription-repair coupling factor [Acinetobacter calcoaceticus
RUH2202]
Length = 1153
Score = 87.5 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 47/164 (28%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+V+ HGVG + + G EF + + + + VPV I
Sbjct: 480 TELSIDAPVVHIDHGVGRYAGLVTLAIEGQDYEFLQLNYA-EGAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKIGSDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFGFELDQSLYMQFASGFAYEETLDQANAIEATLHDMQQARP 626
>gi|49474197|ref|YP_032239.1| transcription repair coupling factor [Bartonella quintana str.
Toulouse]
gi|49239701|emb|CAF26076.1| Transcription repair coupling factor [Bartonella quintana str.
Toulouse]
Length = 1166
Score = 87.5 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 21/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K + +G+ +V+ HG+G +K G+ + I + L
Sbjct: 480 PRRRKHNTNFISEIAALNSGDIVVHIDHGIGQFVGLKTITATGILRDCLEIKYAGGD-RL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+P+ + E + V R +++ +G LI IA
Sbjct: 539 FLPIENIELLSRY------GSEGTDVTLDKLGGVAWQARKTRLKKHL-LEMAGQLIHIAA 591
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P + V + + +AI+ + +L+S
Sbjct: 592 ERATRSAPAFVPPIGPFDE---------FVACFPYEETEDQKDAIDAVLEDLASGKP 639
>gi|304413564|ref|ZP_07395037.1| Transcription-repair coupling factor (superfamily II helicase)
[Candidatus Regiella insecticola LSR1]
gi|304284407|gb|EFL92800.1| Transcription-repair coupling factor (superfamily II helicase)
[Candidatus Regiella insecticola LSR1]
Length = 1165
Score = 87.5 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ GVG + E G+K E+ ++++ + L +P+ I
Sbjct: 497 ELRPGQPVVHLEQGVGRYQGMTTLEAGGIKAEYLILSYAEQD-KLYIPISSLHLISRYCG 555
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + + G Q K AE++ + ++P
Sbjct: 556 GSEQ--DAPIHKLGGD----------VWQRARQKAAEKIRDVAAELLDTYSQRAAKPGFQ 603
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + + + IN + ++ +
Sbjct: 604 FQQDH---QQYRLFCQDFPFDTTPDQEKTINAVLNDMCQPLA 642
>gi|317488238|ref|ZP_07946807.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
gi|316912680|gb|EFV34220.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
Length = 1022
Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
++ G+++V+ AHGV E+ ++V G ++ ++ + L VPV + + R +
Sbjct: 355 YQPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLE-YSEGDKLYVPVEQLDRV-TRYVG 412
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
R +L A R + R + D+ A V+
Sbjct: 413 PEGASPRLTRL--NTADWSRALAKARKATKKLAFDLVDVYARRASVQGYRFGPDT----- 465
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+A M + + AI ++ ++ S
Sbjct: 466 -------AAQREMEEAFPYQETPDQLAAIADVKADMQSAKP 499
>gi|169633480|ref|YP_001707216.1| transcription-repair coupling protein [Acinetobacter baumannii SDF]
gi|169152272|emb|CAP01180.1| transcription-repair coupling protein [Acinetobacter baumannii]
Length = 1153
Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 47/164 (28%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ +GVG + + G EF + + + + VPV I
Sbjct: 480 TELSIGAPVVHIDYGVGRYAGLITLAIEGQDYEFLQLDYA-EDAKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPDSAP--------LHKIGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGFAFELDQSLYMQFASGFAYEETLDQANAIEATLYDMQQAKP 626
>gi|297620477|ref|YP_003708614.1| putative transcription-repair-coupling factor [Waddlia chondrophila
WSU 86-1044]
gi|297375778|gb|ADI37608.1| putative transcription-repair-coupling factor [Waddlia chondrophila
WSU 86-1044]
Length = 1092
Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 17/168 (10%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
GE +V+ +G+G ++++ G+ EFF+I + L VPV +A
Sbjct: 443 PTDVHDLTPGEVVVHLNNGLGKFIGLEKRPNHLGIDSEFFLIEYAD-DAKLYVPVNQAHL 501
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + + T+ S R ++ L +++++ +
Sbjct: 502 ISKYIGAHEEIPK------------LHTLGSSRWKKTRETTERAILGYASDLLKTYANRE 549
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ E A E + + A+ I+ +++S S+
Sbjct: 550 LKGGFAFPEDSPDIQA---FEEEFPFSETEDQLNAVACIKKDMTSPSA 594
>gi|319404239|emb|CBI77832.1| transcription repair coupling factor [Bartonella rochalimae ATCC
BAA-1498]
Length = 1166
Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K + + +G+ +V+ HG+G +K G+ + I + L
Sbjct: 480 PKKRKSNAHFISEIASLNSGDIVVHVDHGIGQFIGLKTIMTTGILRDCLEINYAGGD-RL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+P+ + E + V R +++ KI +G LI IA
Sbjct: 539 FLPIENIELLSRY------GSESTNVTLDKLGSVGWQTRKARLKKHLLKI-AGQLICIAA 591
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P + V + + +AIN + +L+S
Sbjct: 592 ERATRSAPTLTPPVGLFDE---------FVACFPYEETDDQMDAINAVLDDLASGKP 639
>gi|227504114|ref|ZP_03934163.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
6940]
gi|227199290|gb|EEI79338.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
6940]
Length = 1220
Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 59/182 (32%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFD-----K 52
+++ + G+H+V+ HG+G ++ E+ + E+ V+ + +
Sbjct: 501 PAKRRNRVDPLALKQGDHVVHETHGIGRFLKMAERTIQSGDETSRREYIVLEYAASKRGQ 560
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
L VP+ + G+ M + K +
Sbjct: 561 PADQLWVPMDSLDLLSKYTG--------------GEKPTLSKMGGSDWKNTKKKARAAVR 606
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E+V + + P ++ +++ + + + + AI+ ++ ++ S
Sbjct: 607 EIAGELVELYAKRQASPGHQFAPDTPWQAEME---DNFPYIETEDQMLAIDAVKEDMEST 663
Query: 173 SS 174
Sbjct: 664 VP 665
>gi|126662926|ref|ZP_01733924.1| transcription-repair coupling factor [Flavobacteria bacterium
BAL38]
gi|126624584|gb|EAZ95274.1| transcription-repair coupling factor [Flavobacteria bacterium
BAL38]
Length = 1087
Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 15/174 (8%), Positives = 52/174 (29%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G E + + + + + V
Sbjct: 393 SKKQTITLKELTSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDI-VYVS 451
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I G + S + K + +++
Sbjct: 452 IHSLHKISKYNG------------KDGAPPKIYKLGSNAWKTLKQKTKARIKHIAFNLIQ 499
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +S + + ++ + A ++ ++ ++
Sbjct: 500 LYAKRRLDKGFQFSPDSYLQ---KELESSFIYEDTPDQITATADVKADMENERP 550
>gi|303242330|ref|ZP_07328815.1| CarD family transcriptional regulator [Acetivibrio cellulolyticus
CD2]
gi|302590093|gb|EFL59856.1| CarD family transcriptional regulator [Acetivibrio cellulolyticus
CD2]
Length = 175
Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 11/164 (6%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
++ G+ I+Y HGV + I V G+ ++ I+ + PV ++ MR
Sbjct: 1 MYQIGDFIIYGNHGVYKVDGIGTPGVCGIDENKLYYTISAVYGNERIFTPVDT--NVFMR 58
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRR--AQEYDAKINSGDLIAIAEVVRDLHRTD-- 126
K+ V++ + L+ + + Y + + D + E+++ ++
Sbjct: 59 KIITFDEVQQLISLIPSIKESVYCNRNIKLVEDHYQEYLQAYDCRDLVELIKSIYTKKTI 118
Query: 127 ---SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ + + A + E+A I + IE
Sbjct: 119 VAEQGKKLGQIDERFMRKAEELLYGELAVALKIPKESVKGYIEE 162
>gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
Length = 1168
Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 17/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+++V+ HG+G I++ +V G++ ++ VI K L +P + +
Sbjct: 500 SDLNIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVI-QYKANDRLMIPTDQMNLVQKYI 558
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
KL AK ++ E+ DL S+ K
Sbjct: 559 GGGNVKKPSLNKLSGND---------------WAKAKQKAKKSVDEMADDLVELYSKRAK 603
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ R + S+ +I I+ ++ S
Sbjct: 604 LKGYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADMESDRP 647
>gi|85373850|ref|YP_457912.1| transcription-repair coupling factor [Erythrobacter litoralis
HTCC2594]
gi|84786933|gb|ABC63115.1| transcription-repair coupling factor [Erythrobacter litoralis
HTCC2594]
Length = 1162
Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A Q G+ +V+ HG+G ++ V + + V+ + L +PV +
Sbjct: 479 AELQALTRGDLVVHVEHGIGKYLGLEPIAVGKSQHDC-VMLEYRGGDKLYIPVENIDVLS 537
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
SE + ++ W RR + +I E+++ + +
Sbjct: 538 RYGSSEEAVML---------DKLGGEAWQRRRAQLRERIR----EIAGELMKTAAQRALK 584
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S N+ V + + + AI + +L S
Sbjct: 585 KAPVLEAE---DSVFNQFVEKFPWEETDDQEAAIADVLRDLESGRP 627
>gi|290475839|ref|YP_003468731.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
bovienii SS-2004]
gi|289175164|emb|CBJ81967.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
bovienii SS-2004]
Length = 1146
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 27/181 (14%)
Query: 3 FQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
++++D+ R R G+ +V+ HGVG + E G++ E+ ++ +
Sbjct: 454 SRRRQDSRRTINTDILIRNLAELRRGQPVVHLEHGVGRYQGLMMLEAGGIQAEYLILTYA 513
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ L VPV I L + G+A + K
Sbjct: 514 GED-KLYVPVSSLHLISRYAGGAEDSAP--LHKLGGEA----------WNKARQKAAEKV 560
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
AE++ + +P + ++ + + + +AIN + ++
Sbjct: 561 RDVAAELLDVYAQRAIKPGFACTQD---PEQYQLFCQSFPFDTTPDQEQAINAVLDDMCQ 617
Query: 172 K 172
Sbjct: 618 P 618
>gi|332285001|ref|YP_004416912.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
gi|330428954|gb|AEC20288.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
Length = 1158
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G+ +V+ HG+G + E ++ ++EF + + L VPV + I
Sbjct: 488 DLSELREGDPVVHAQHGIGRYCGLIEMDLGEGQMEFLHLEYAN-GSTLYVPVAQLHVIAR 546
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + K + + +L +
Sbjct: 547 YSGADPEHAP--LHQLGSGQ--------------WDKARRKAAKQVRDAAAELLALYAHR 590
Query: 130 EKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R +L + + + AI + +++S
Sbjct: 591 AAREGFRFKLPPNDYQAFAEGFGFEETPDQAAAIEAVLGDMTSGRP 636
>gi|320532549|ref|ZP_08033357.1| putative transcription-repair coupling factor [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320135236|gb|EFW27376.1| putative transcription-repair coupling factor [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 598
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 55/167 (32%), Gaps = 8/167 (4%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
G+ +V+ HGVG E+ + V G + ++ + ++ K
Sbjct: 1 SVDPLSLHAGDLVVHAQHGVGRFIELSRRAVGGA-----RSSATREYLVIEYAPSKRGQP 55
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
G R L +++ K V G + M + +K E+VR +
Sbjct: 56 GDRLLVPTDALDQVTKYVGGDSPALSKMGGADWAKTKSKARKAVREIAGELVRLYAARAA 115
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S +++ + + + I+ ++ ++
Sbjct: 116 TTGHAFSPDSPWQT---ELEEAFPYTETPDQLSTIDEVKADMEKAQP 159
>gi|146298962|ref|YP_001193553.1| transcription-repair coupling factor [Flavobacterium johnsoniae
UW101]
gi|146153380|gb|ABQ04234.1| transcription-repair coupling factor [Flavobacterium johnsoniae
UW101]
Length = 1121
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/174 (8%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K++ + G+++ + HG+G +++ +V G E + + + + + V
Sbjct: 425 SKKQNITLKELTALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDI-VYVS 483
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I G + S + K + +++
Sbjct: 484 IHSLHKISKYNG------------KDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQ 531
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + N + ++ + ++ ++ ++ S
Sbjct: 532 LYAKRRLEKGFQFAPDSYLQ---NELESSFIYEDTPDQMKSTQEVKADMESDRP 582
>gi|319898902|ref|YP_004158995.1| transcription repair coupling factor [Bartonella clarridgeiae 73]
gi|319402866|emb|CBI76417.1| transcription repair coupling factor [Bartonella clarridgeiae 73]
Length = 1166
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 21/176 (11%)
Query: 3 FQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K + +G+ +V+ HG+G +K G+ + I + L
Sbjct: 481 KRRKNKAHFISEITSLNSGDIVVHVDHGIGQFIGLKTIMTTGILRDCLEINYAGGD-RLF 539
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+PV + E + R +++ KI +G LI IA
Sbjct: 540 LPVENIELLSRY------GSENTNVTLDKLGSAGWQTRKTRLKKHLLKI-AGQLICIAAE 592
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P + V + + +AI+ + +L+S
Sbjct: 593 RATRSAPALTPPVGLFDE---------FVACFPYEETDDQMDAIDAVLDDLASGKP 639
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040624|gb|ACT57420.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 23/175 (13%)
Query: 5 QKRDAMRQGF------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+K++ Q F G IV+ HG+G + EV+G + + + L
Sbjct: 488 RKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYAD-NAKLF 546
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VPV I L + G A W R K DL
Sbjct: 547 VPVENIDLISRY---STEITTVTLDKLGGSA------WKTRKANL--KKRLEDLAQKLVD 595
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ S P S + ++ ++ V + + +AI+ + +LSS
Sbjct: 596 IAAKRAIHSVPPLMVS-----QDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGR 645
>gi|113970068|ref|YP_733861.1| transcription-repair coupling factor [Shewanella sp. MR-4]
gi|113884752|gb|ABI38804.1| transcription-repair coupling factor [Shewanella sp. MR-4]
Length = 1160
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + L VPV I +
Sbjct: 486 ELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLE-YSGGDKLYVPVSNLHMISRYSV 544
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ + AK + + I +V +L ++ +
Sbjct: 545 GADG----------------DAHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQAR 588
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E + + + + ++ + AI+ + ++ S
Sbjct: 589 PGESCDINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSP 629
>gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 1163
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 53/169 (31%), Gaps = 18/169 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G ++V+ +G+G I++ +V G+ ++ I + L VPV +
Sbjct: 494 KIKSFTELEVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGGD-TLFVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ ++ K A+ ++ +DL +
Sbjct: 553 VQKYV----------------GPTDNPPKLNKLGGSEWLKAKRKAKKAVEDLAKDLLQLY 596
Query: 127 SQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + ++ R + + + I I+ ++
Sbjct: 597 AKRQIAKGHAFSPDTPWQREFEEQFPYEETEDQLRCIKEIKEDMEKDKP 645
>gi|218777910|ref|YP_002429228.1| transcription-repair coupling factor [Desulfatibacillum
alkenivorans AK-01]
gi|218759294|gb|ACL01760.1| transcription-repair coupling factor [Desulfatibacillum
alkenivorans AK-01]
Length = 1179
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 64/181 (35%), Gaps = 26/181 (14%)
Query: 3 FQQKRDAMR--------QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++K + R G+ +V+ HG+ + + ++ G+ +F ++ +D
Sbjct: 495 RRRKIETQRPRTELLDLAQLSQGDFVVHVDHGIAQYGGLVKMDLGGVANDFLLLE-YRDG 553
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L +PV K+ I + AL+ + GKA K+ S +
Sbjct: 554 DKLYLPVDKSNLIQKYRTMGETAP--ALEKLGGKA--------------WEKVKSRVKKS 597
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ +L + + + + + + +AIN + ++ ++
Sbjct: 598 VEKIAGELLKLYAVRKVKQGYAFSPTDSYFAEFEANFEYEETPDQAKAINDVLADMENRR 657
Query: 174 S 174
Sbjct: 658 P 658
>gi|149177449|ref|ZP_01856053.1| transcription-repair coupling factor [Planctomyces maris DSM 8797]
gi|148843782|gb|EDL58141.1| transcription-repair coupling factor [Planctomyces maris DSM 8797]
Length = 1112
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 20/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K ++ G+ +V+ +HG+ ++ E G + E +DK+ +
Sbjct: 426 PRKRKVESRAIDSFLDLNVGDFVVHLSHGIARFRGLELLEKEGYREEHL-SLEFRDKVQM 484
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + H + ++ K ++
Sbjct: 485 YVPVSLVHLVQKYIGGGKHV------------PRLSKLGTKSWASKKEKAAEAVRDMASD 532
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R + QP SY ++ + + AI+ + ++
Sbjct: 533 MLRLQAQRSGQPGISYPPDSHWQ---KEFEASFPYTETSDQLHAISDVRHDMERAQP 586
>gi|117920732|ref|YP_869924.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
gi|117613064|gb|ABK48518.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
Length = 1160
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + L VPV I +
Sbjct: 486 ELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLE-YSGGDKLYVPVSNLHMISRYSV 544
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ + AK + + I +V +L ++ +
Sbjct: 545 GADG----------------EAHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQAR 588
Query: 133 YSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E + + + + ++ + AI+ + ++ S
Sbjct: 589 PGESCDINDEEYAQFAQGFPFEETVDQESAIHAVLADMQSP 629
>gi|255014104|ref|ZP_05286230.1| putative transcription-repair coupling factor [Bacteroides sp.
2_1_7]
Length = 1120
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 17/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++IV+ HGVG + EV G E + ++ + V + +
Sbjct: 427 ELNQFSQGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIKL-IYQNNDIIFVSIHSLHKLSK 485
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E+ + KL G K+ + ++ RDL S+
Sbjct: 486 YKGKESGEPPKLSKLGTGA---------------WEKMKERTKAKVKDIARDLILLYSKR 530
Query: 130 EKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +S + + ++ + +AI ++ ++ S
Sbjct: 531 KQETGFAYTPDSFMQHELEASFIYEDTPDQMKAIAEVKADMESTRP 576
>gi|46447155|ref|YP_008520.1| transcription-repair coupling factor [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400796|emb|CAF24245.1| probable transcription-repair coupling factor mfd [Candidatus
Protochlamydia amoebophila UWE25]
Length = 1101
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 19/169 (11%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
A GE IV+ +G+G I+++ G+ EFF I + L VP +A
Sbjct: 451 PAETYDLTPGEVIVHLNNGIGRYLGIEKRANHLGILSEFFTIEYADQ-AKLYVPFNQAHL 509
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I S ++ + + W K AI DL ++
Sbjct: 510 ITKYLGSNE--------VIPKLHTIGSSKWK--------KTKEHTERAILGYASDLLKSY 553
Query: 127 SQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ E +SA L E + + AI+ I+ ++ SK +
Sbjct: 554 AEREIKEGFAYPIDSADLQSFEGEFPFSETEDQLAAISSIKQDMMSKKA 602
>gi|296123961|ref|YP_003631739.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
3776]
gi|296016301|gb|ADG69540.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
3776]
Length = 1103
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ +HG+G ++ E + F KD L VPV +
Sbjct: 428 DLNEGDLVVHLSHGIGRFLGMQILAKGDQSEEHMHLEF-KDGAKLFVPVALIHLVQKYVG 486
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E L + G A A+ A+ ++ D+ R ++ E
Sbjct: 487 GQKTAPE--LSKLGGTA--------------WAQKKKRVAEAVTDMAADMLRLQAERELQ 530
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + +I + +AI I+ ++
Sbjct: 531 PGIAFPPDSHWMEEFEASFPYIETIDQSKAILDIKRDMERPRP 573
>gi|315022463|gb|EFT35490.1| transcription-repair coupling factor [Riemerella anatipestifer
RA-YM]
Length = 1096
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G++I + HG+G + + G E F + K+ L V + I
Sbjct: 407 DLMSLKVGDYIAHIDHGIGKFMGLVKVNNGGKTQECFKL-TYKNGDLLYVSIHALHKISK 465
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+E GK + S + K + ++++ + +
Sbjct: 466 YNGAE------------GKEITLSKIGSPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAK 513
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+Y+ + N + ++ + +A ++ ++ +
Sbjct: 514 GFAYTPDTYLQ---NELEASFLYEDTPDQEKATLDVKRDMEA 552
>gi|182419889|ref|ZP_02951127.1| transcriptional regulator, CarD family [Clostridium butyricum 5521]
gi|237669021|ref|ZP_04529005.1| transcriptional regulator, CarD family [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182376258|gb|EDT73842.1| transcriptional regulator, CarD family [Clostridium butyricum 5521]
gi|237657369|gb|EEP54925.1| transcriptional regulator, CarD family [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 165
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ +VYP GVG I I+E+E G K +++ I + M L +P+ + MR +
Sbjct: 3 EFDIGDKVVYPNQGVGVIDLIEEKEFKGKKEKYYKIHLINNTMKLSLPLSRVKSANMRHI 62
Query: 73 SEAHFVE----RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
S++ ++ V+ ++ +T + R + Y K+ SG L E++ +L +
Sbjct: 63 SDSKTLDSKLNNIKYYVKEVDKLAKTNYKERNEIYSTKVKSGTLEDFLEIISNLTELKTI 122
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ + E+ + + ++ EIA IS EA L+++ ++S
Sbjct: 123 HDLNSMEKTILRNTKRILIDEIAQSKKISLDEAGYLLDIFMNS 165
>gi|304440475|ref|ZP_07400363.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371041|gb|EFM24659.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 1148
Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 62/168 (36%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + + G+++V+ HG+G K ++ G++ ++ + L +PV
Sbjct: 482 NTIVLKDLKIGDYVVHEIHGIGVYNGTKTMDIQGIRRDYL-ELSYQGDDRLFLPVENLDV 540
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I K ++ + + K K+ +++A E AK ++ +
Sbjct: 541 IH--KFVGNEGIKPKINKLSSKDWQKQKSKAKKAVEEMAKY----------LIELYAKRA 588
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++SE ++ + + AI I+ ++ S +
Sbjct: 589 NAKGFAFSEDTPWQ---GEFEDAFIYEETEGQLNAIKEIKEDMESPTP 633
>gi|254372994|ref|ZP_04988483.1| transcription-repair coupling factor,ATP-dependent [Francisella
tularensis subsp. novicida GA99-3549]
gi|151570721|gb|EDN36375.1| transcription-repair coupling factor,ATP-dependent [Francisella
novicida GA99-3549]
Length = 1141
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + + + ++ K + A ++ + + +
Sbjct: 529 YNSSLTEK------------IALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 576
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 577 GFSNS---LDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|157828769|ref|YP_001495011.1| transcription-repair coupling factor [Rickettsia rickettsii str.
'Sheila Smith']
gi|157801250|gb|ABV76503.1| transcription-repair coupling factor [Rickettsia rickettsii str.
'Sheila Smith']
Length = 1122
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I + + L +
Sbjct: 444 TNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYI 502
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I L + A W R + +I L I
Sbjct: 503 PVESIEVIKKY-----GNDNAVLDKLGSVA------WQRSKAKLKKRIKEIALHLIQIAA 551
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 552 KRKLNSSASVEFDLEE-------YDKFCANFPFSETEDQLIAINDIKEDLRNG 597
>gi|332678337|gb|AEE87466.1| Transcription-repair coupling factor [Francisella cf. novicida Fx1]
Length = 1141
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + + + ++ K + A ++ + + +
Sbjct: 529 YNSSLTEK------------IALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 576
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 577 GFSNS---LDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|165933497|ref|YP_001650286.1| transcription-repair coupling factor [Rickettsia rickettsii str.
Iowa]
gi|13235395|emb|CAC33672.1| Mfd protein [Rickettsia rickettsii]
gi|165908584|gb|ABY72880.1| transcription-repair coupling factor [Rickettsia rickettsii str.
Iowa]
Length = 1122
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I + + L +
Sbjct: 444 TNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYI 502
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I L + A W R + +I L I
Sbjct: 503 PVESIEVIKKY-----GNDNAVLDKLGSVA------WQRSKAKLKKRIKEIALHLIQIAA 551
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 552 KRKLNSSASVEFDLEE-------YDKFCANFPFSETEDQLIAINDIKEDLRNG 597
>gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum
WM1]
gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum
WM1]
Length = 1179
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 52/167 (31%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+++V+ HG+G I++ E G+ ++ + + L +P +
Sbjct: 500 KIQNFSDLSIGDYVVHEDHGLGIYRGIEKIEQDGIIKDYLKVEYAD-NGNLYLPATRLDG 558
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + K + + ++ E+V+
Sbjct: 559 IQKYAGA------------DAKKPKLNRLGGEQWNRTKTRVKGAVKEIAKELVQLYAARQ 606
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y E +++ M + + +AI + ++ S+
Sbjct: 607 QTHGFQYGEDTVWQKEFEEM---FPYEETEDQWDAIESTKSDMESRK 650
>gi|325107412|ref|YP_004268480.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
5305]
gi|324967680|gb|ADY58458.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
5305]
Length = 1114
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 55/179 (30%), Gaps = 22/179 (12%)
Query: 2 TFQQKRDAMRQ------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
Q+++ + G+ +V+ HG+G ++ E V+ F +
Sbjct: 432 PNQKRKTIQSRAIESFLELSEGDLVVHVGHGIGIFRGMQLIRGEDRTEEHLVLEFAD-NV 490
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
+ VPV + + +A + + K++
Sbjct: 491 RIFVPVSLIHLVQKYVGAS-----KAFPRLSKIGSNSWGQKKK-------KVSQAVADMA 538
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A++++ +++ +Y + + + + AI+ I ++ +
Sbjct: 539 ADMIKLQATREAKKGIAYPGDSHW---YEEFEQAFPYEETPDQATAIDSIREDMMRERP 594
>gi|227548210|ref|ZP_03978259.1| possible transcription-repair coupling factor [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079684|gb|EEI17647.1| possible transcription-repair coupling factor [Corynebacterium
lipophiloflavum DSM 44291]
Length = 1191
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 57/175 (32%), Gaps = 26/175 (14%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFD-----KDKMCLKV 59
G+ +V+ HG+G ++ E+ V + E+ V+ + + L V
Sbjct: 492 VDPLALNPGDFVVHETHGIGRFVKMAERTVHTGEEDSRREYIVLEYQPAKRGQPNDQLWV 551
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P+ + G+ M + K + AE+V
Sbjct: 552 PMESLDLLSKYSG--------------GEQPSLSKMGGSDWRSTKRKARAAVREIAAELV 597
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + P +++ ++ + V + + AI+ ++ ++ +
Sbjct: 598 QLYAKRQAAPGHAFAPDTPWQVEME---DNFPFVETEDQLLAIDAVKEDMEKPTP 649
>gi|87199999|ref|YP_497256.1| transcription-repair coupling factor [Novosphingobium
aromaticivorans DSM 12444]
gi|87135680|gb|ABD26422.1| transcription-repair coupling factor [Novosphingobium
aromaticivorans DSM 12444]
Length = 1164
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 19/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G+ +V+ HG+G ++ V + V L +PV +
Sbjct: 484 AELSALTPGDLVVHMDHGIGRYIGLEAVAVGASPHDC-VQLEYAGGDKLYIPVENLD-VL 541
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R S+A V ++ W RR + I E+ L T +
Sbjct: 542 SRYGSDAEGV--------SLDKLGGEAWQRRKARMRER--------ILEMAGQLMATAAH 585
Query: 129 PEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + + AI+ + +++
Sbjct: 586 RALRQGLVLPVDPASYGPFIDRFPWDETEDQERAIDDVLGDMAEGKP 632
>gi|94986749|ref|YP_594682.1| transcription-repair coupling factor [Lawsonia intracellularis
PHE/MN1-00]
gi|94730998|emb|CAJ54361.1| transcription-repair coupling factor (superfamily II helicase)
[Lawsonia intracellularis PHE/MN1-00]
Length = 1155
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 41/163 (25%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ +GV + ++ + +F ++ + + L +PV +
Sbjct: 483 DDLNPGDLLVHKNYGVARFGGLIRMDIGKISNDFLLLEYAGND-KLYLPVDRLSLTQR-- 539
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
K V + S Q K +++
Sbjct: 540 ----------FKSVNESFPQLDRLGSTSWQASKDKAKKSIEKVAEDIIEMYAWRKVAKGF 589
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+Y + + AI + ++
Sbjct: 590 TYPPVGDL---YREFEASFGFEETPDQARAIQDVLADMEKSEP 629
>gi|86160747|ref|YP_467532.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
2CP-C]
gi|85777258|gb|ABC84095.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
2CP-C]
Length = 1241
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ HG+ + + ++ G++ +F V+ L +PV K +
Sbjct: 513 RELNEGDLVVHVEHGIAKYLGLTKMQIRGVEGDFLVL-AYDGADRLYLPVAKLRQVQKFT 571
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + + R +E K+ + E++ + P
Sbjct: 572 GASPETI-----RLDRLGGSSFALRKARVKEQLLKMAA-------ELLDIYAARAAHPGF 619
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+Y E + E + + +AI + ++
Sbjct: 620 AYPE---PDELFREFEAEFPWEETPDQAKAIEDVVRDMRKGR 658
>gi|332558234|ref|ZP_08412556.1| transcription-repair coupling factor [Rhodobacter sphaeroides WS8N]
gi|332275946|gb|EGJ21261.1| transcription-repair coupling factor [Rhodobacter sphaeroides WS8N]
Length = 1165
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 32/185 (17%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEV-------AGMKLEFFVIAF 50
++++ G+ +V+ HGVG ++ V G ++ +
Sbjct: 461 PKKRRKAENFLREHDTLTPGDLVVHVEHGVGRYMGLETLRVPQPPSNKPGPPHDYLHL-V 519
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ L +PV + E L + G A +
Sbjct: 520 YAEDAKLYLPVENIELLSRY-----GHEEGLLDKLGGGA--------------WQAKKAR 560
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
I E+ L R ++ ++ + S + + AI + +L
Sbjct: 561 LKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSARFPYQETDDQLSAIADVVKDL 620
Query: 170 SSKSS 174
S S
Sbjct: 621 ESGSP 625
>gi|310824213|ref|YP_003956571.1| transcription-repair-coupling factor [Stigmatella aurantiaca
DW4/3-1]
gi|309397285|gb|ADO74744.1| Transcription-repair-coupling factor [Stigmatella aurantiaca
DW4/3-1]
Length = 1194
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+ IV+ G+G + + +V G+ +F V+ + + +PVG MR
Sbjct: 523 KDLKEGDLIVHTDFGIGRYAGLTKMQVNGVPGDFLVLEYAGRD-KIYLPVG-----RMRL 576
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + + + RR +E K+ + L A +
Sbjct: 577 IQKFTGGDPSQVQLDKLGTPGWEKTKRRVKEQLLKMAAELLQLAAA-----RKAHPGHAF 631
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S +R + + + + +AI + ++ +
Sbjct: 632 SAPDRYFAQ-----FEADFEFEETPDQAKAIEDVLADMQKPTP 669
>gi|208779432|ref|ZP_03246778.1| transcription-repair coupling factor [Francisella novicida FTG]
gi|208745232|gb|EDZ91530.1| transcription-repair coupling factor [Francisella novicida FTG]
Length = 1141
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + + + ++ K + A ++ + + +
Sbjct: 529 YNSSLTEK------------IALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 576
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 577 GFSNS---LDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|126462211|ref|YP_001043325.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
17029]
gi|126103875|gb|ABN76553.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
17029]
Length = 1165
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 32/185 (17%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEV-------AGMKLEFFVIAF 50
++++ G+ +V+ HGVG ++ V G ++ +
Sbjct: 461 PKKRRKAENFLREHDTLTPGDLVVHVEHGVGRYMGLETLRVPQPPSNKPGPPHDYLHL-V 519
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ L +PV + E L + G A +
Sbjct: 520 YAEDAKLYLPVENIELLSRY-----GHEEGLLDKLGGGA--------------WQAKKAR 560
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
I E+ L R ++ ++ + S + + AI + +L
Sbjct: 561 LKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSARFPYQETDDQLSAIADVVKDL 620
Query: 170 SSKSS 174
S S
Sbjct: 621 ESGSP 625
>gi|77463357|ref|YP_352861.1| transcription-repair coupling factor (helicase) [Rhodobacter
sphaeroides 2.4.1]
gi|77387775|gb|ABA78960.1| transcription-repair coupling factor (helicase) [Rhodobacter
sphaeroides 2.4.1]
Length = 1165
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 32/185 (17%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEV-------AGMKLEFFVIAF 50
++++ G+ +V+ HGVG ++ V G ++ +
Sbjct: 461 PKKRRKAENFLREHDTLTPGDLVVHVEHGVGRYMGLETLRVPQPPSNKPGPPHDYLHL-V 519
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ L +PV + E L + G A +
Sbjct: 520 YAEDAKLYLPVENIELLSRY-----GHEEGLLDKLGGGA--------------WQAKKAR 560
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
I E+ L R ++ ++ + S + + AI + +L
Sbjct: 561 LKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSARFPYQETDDQLSAIADVVKDL 620
Query: 170 SSKSS 174
S S
Sbjct: 621 ESGSP 625
>gi|190891739|ref|YP_001978281.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
CIAT 652]
gi|190697018|gb|ACE91103.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
CIAT 652]
Length = 1167
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G G +V+ HG+G +K E AG + + + L +PV +
Sbjct: 496 AEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 554
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G A Q AK+ L ++R ++
Sbjct: 555 RY---GGEGTDAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTR 601
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI+ + +L +
Sbjct: 602 HAPVLTTPDGL---YDEFSARFPYDETEDQDNAIDAVRSDLGAGRP 644
>gi|213617524|ref|ZP_03372350.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 240
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 16/153 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 104 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAG 162
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 163 GAEESAP--LHKLGGDA----------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 210
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLI 165
+ + + + +AIN +
Sbjct: 211 FKHDR---EQYQLFCDSFPFETTPDQAQAINAV 240
>gi|240850603|ref|YP_002972003.1| transcription repair coupling factor [Bartonella grahamii as4aup]
gi|240267726|gb|ACS51314.1| transcription repair coupling factor [Bartonella grahamii as4aup]
Length = 1166
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 58/177 (32%), Gaps = 21/177 (11%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K + +G+ IV+ HG+G +K + G+ + I + + L
Sbjct: 480 PKRRKNNTNFISEISALNSGDIIVHIDHGIGQFVGLKTIKTTGILRDCLEIRYAGGDL-L 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + + E L + G A Q A++ L +
Sbjct: 539 FLPVENIELLSRY---GSEGTEVTLDKLGGVA----------WQARKARLKKHLLEMAGQ 585
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R ++ + + V + + AI+ + +L+S
Sbjct: 586 LIRIAAERMTRAAPALLPPIGP---FDEFVACFPYEETEDQMNAIDAVLDDLASGKP 639
>gi|332829530|gb|EGK02179.1| hypothetical protein HMPREF9455_01813 [Dysgonomonas gadei ATCC
BAA-286]
Length = 1108
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q F+ G++IV+ HGVG + ++ G E + + + V + I
Sbjct: 422 ELQQFQIGDYIVHIDHGVGQFGGLVRSDMNGKMQE-LIKLIYLNNDSIFVSLHALHKISK 480
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ E G+ + + + K S ++++ + +
Sbjct: 481 YRGKE------------GEPPRINKLGTGAWNKIKEKTKSKVKDIARDLIQLYAKRRQEE 528
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + + + ++ + +A ++ ++ +
Sbjct: 529 GFKFSPDSFLQ---HELEASFIYEDTPDQVKATADVKQDMENSKP 570
>gi|119945864|ref|YP_943544.1| transcription-repair coupling factor [Psychromonas ingrahamii 37]
gi|119864468|gb|ABM03945.1| fused transcription-repair coupling factor and superfamily II
helicase [Psychromonas ingrahamii 37]
Length = 1163
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 43/163 (26%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ + +V+ +GVG ++ E AG EF V L VPV I
Sbjct: 487 EIKIDQPVVHIDYGVGKYLGLETIETAGHLTEF-VKLEYLRGDKLYVPVSSLQLISRYSG 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ E K + +V +L +Q
Sbjct: 546 HDVENAPI----------------NKLGTETWQKAKKQAAEKVRDVAAELLEVYAQRAAK 589
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + I + ++ S
Sbjct: 590 VGHQYKLNKTHYALFSNDFPFEETHDQALTIKAVISDMCSSQP 632
>gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
43243]
gi|217989953|gb|EEC55964.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
43243]
Length = 1177
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 58/168 (34%), Gaps = 16/168 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K A G+++V+ +G+G I++ EV G++ ++ I + L + +
Sbjct: 496 KAIADFNELAIGDYVVHENYGLGIYRGIEKIEVEGIERDYIKIEYSGTD-TLYILATQLD 554
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + + + S+ + +K+ + ++V +
Sbjct: 555 VLQKYAGA------------DARKPKLNKLNSQEWGKTKSKVKTAVEQVAKDLVELYAKR 602
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + E +++ M + + AI + ++ S
Sbjct: 603 QNEQGFQFGEDTVWQREFEEM---FPYEETSDQLAAIEDTKHDMQSTK 647
>gi|119512690|ref|ZP_01631763.1| transcriptional-repair coupling factor [Nodularia spumigena
CCY9414]
gi|119462657|gb|EAW43621.1| transcriptional-repair coupling factor [Nodularia spumigena
CCY9414]
Length = 1164
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 62/176 (35%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ + +Q R G+++V+ +HGVG +++ + ++ V+ + L+
Sbjct: 479 RKRRQASSKQVDPNKLRQGDYVVHRSHGVGKFVKLESLTINHETRDYLVVQYA--DGILR 536
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + KA M + + ++ ++
Sbjct: 537 VAADQVGSLSR------------FRRTGDKAPELHKMTGKAWENTKNRVRKAIKKLAVDL 584
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ Q +Y + ++ + + + +A+ ++ ++ S
Sbjct: 585 LKLYAARSKQEGYTYPQDMPWQEEME---DSFPYQATTDQLKAVQDVKRDMESDRP 637
>gi|317153444|ref|YP_004121492.1| transcription-repair coupling factor [Desulfovibrio aespoeensis
Aspo-2]
gi|316943695|gb|ADU62746.1| transcription-repair coupling factor [Desulfovibrio aespoeensis
Aspo-2]
Length = 1160
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 46/163 (28%), Gaps = 15/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ +G+ + + ++ ++ F L +PV + + R
Sbjct: 484 EDLSDGDLLVHRDYGLAQFGGLHHMSIGDAANDYLLLFFSG-DDKLYLPVDRLNLV-QRF 541
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ AL + G R AK+ E+V
Sbjct: 542 KGPEGARQPALDKLGG----------TRWSATTAKVRKAVEKIAQELVEMYAFRRVAKGF 591
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SY + + + +A+ + ++
Sbjct: 592 SYGPPDDM---YSEFEATFGFEETPDQDKAVRDVFSDMEKPEP 631
>gi|270291823|ref|ZP_06198038.1| transcription-repair coupling factor [Streptococcus sp. M143]
gi|270279351|gb|EFA25193.1| transcription-repair coupling factor [Streptococcus sp. M143]
Length = 1167
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIQLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++
Sbjct: 595 FSADDDDQHAFDDA---FPYVETDDQLRSIEEIKRDMQDSHP 633
>gi|188990859|ref|YP_001902869.1| Transcription-repair coupling factor (TRCF). [Xanthomonas
campestris pv. campestris str. B100]
gi|167732619|emb|CAP50813.1| Transcription-repair coupling factor (TRCF) [Xanthomonas campestris
pv. campestris]
Length = 1156
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 486 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 544
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 545 ASADTAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 588
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 589 AGLALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQP 631
>gi|66767742|ref|YP_242504.1| transcription-repair coupling factor [Xanthomonas campestris pv.
campestris str. 8004]
gi|66573074|gb|AAY48484.1| transcription-repair coupling factor [Xanthomonas campestris pv.
campestris str. 8004]
Length = 1155
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 485 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 543
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 544 ASADTAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 587
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 588 AGLALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQP 630
>gi|320537605|ref|ZP_08037541.1| transcription-repair coupling factor [Treponema phagedenis F0421]
gi|320145523|gb|EFW37203.1| transcription-repair coupling factor [Treponema phagedenis F0421]
Length = 1148
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/162 (9%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ +G+G I+ G + + ++ ++ + +P+ +A +
Sbjct: 484 ELNPGDYVVHVNYGIGLFKGIERVRSGGTERD-YINLLYANEETVFIPIEQANLVQRYIG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E G+A + S+ + K+ +++ R + +
Sbjct: 543 NE------------GEAPRLDILGSKSWENRKNKVKKSVEDIANKLIDLYSRRKAARGHA 590
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ A + + + ++ ++
Sbjct: 591 FQPDDEWQLA---FEAAFPYEETDDQLTCVAEVKADMEKPVP 629
>gi|260577719|ref|ZP_05845654.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC
43734]
gi|258604114|gb|EEW17356.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC
43734]
Length = 1243
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ +G+ +V+ +HG+G ++ E+ V A ++ + L+
Sbjct: 526 PAKKRNRVDPLALESGDLVVHDSHGIGKFVKMTERTVGKGPD-----ASRREYLVLEYAP 580
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G + ++ + V G+ M + K E+V+
Sbjct: 581 SKRGGPGDQLYVPMDQLDMLSRYVGGEKPALSKMGGADWKNTKRKARGAVREIAGELVQL 640
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P +++ ++ + + + AI ++ ++
Sbjct: 641 YASRQAAPGYAFAADTPWQREME---DAFPFTETEDQYNAIEAVKADMEKPVP 690
>gi|21232129|ref|NP_638046.1| transcription-repair coupling factor [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|21113878|gb|AAM41970.1| transcription-repair coupling factor [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 1155
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 485 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 543
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 544 ASADTAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 587
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 588 AGLALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQP 630
>gi|158337270|ref|YP_001518445.1| transcription-repair coupling factor [Acaryochloris marina
MBIC11017]
gi|158307511|gb|ABW29128.1| transcription-repair coupling factor [Acaryochloris marina
MBIC11017]
Length = 1164
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/177 (10%), Positives = 57/177 (32%), Gaps = 23/177 (12%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+++R ++ + G+ +V+ HG+G +++ + E+ V+ + L+
Sbjct: 474 RKRRRATSKKVDPNKLQPGDFVVHRNHGIGKFLKLESLTLNHETREYLVLQYA--DGTLR 531
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + L R + + + K + +I ++
Sbjct: 532 VAADQLGS---------------LSRFRNTGEGRPQLNKMSGKA-WEKTKNKVRKSIKKL 575
Query: 119 VRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL + +Q + + M + + +A ++ ++ +
Sbjct: 576 AVDLLKLYAQRAQQEGFTFPLDQPWQEEMEDSFPYQPTADQLKAAQDVKRDMENPRP 632
>gi|254374445|ref|ZP_04989927.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548]
gi|151572165|gb|EDN37819.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548]
Length = 1141
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + + + ++ K + A ++ + + +
Sbjct: 529 YNSSLTEK------------IALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 576
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 577 GFSNS---LDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|118497630|ref|YP_898680.1| transcription-repair coupling factor [Francisella tularensis subsp.
novicida U112]
gi|195536331|ref|ZP_03079338.1| transcription-repair coupling factor [Francisella tularensis subsp.
novicida FTE]
gi|118423536|gb|ABK89926.1| transcription-repair coupling factor [Francisella novicida U112]
gi|194372808|gb|EDX27519.1| transcription-repair coupling factor [Francisella tularensis subsp.
novicida FTE]
Length = 1141
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + + + ++ K + A ++ + + +
Sbjct: 529 YNSSLTEK------------IALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 576
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 577 GFSNS---LDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|238650718|ref|YP_002916571.1| transcription-repair coupling factor [Rickettsia peacockii str.
Rustic]
gi|238624816|gb|ACR47522.1| transcription-repair coupling factor [Rickettsia peacockii str.
Rustic]
Length = 1122
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I + + L +
Sbjct: 444 TNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYI 502
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A F ++ W R + +I L I
Sbjct: 503 PVESIEVIKKYGNDNAEF-----------DKLGSVAWQRSKAKLKKRIKEIALHLIQIAA 551
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 552 KRKLNSSASVEFDLEE-------YDKFCANFPFSETEDQLIAINDIKEDLRNG 597
>gi|160875623|ref|YP_001554939.1| transcription-repair coupling factor [Shewanella baltica OS195]
gi|160861145|gb|ABX49679.1| transcription-repair coupling factor [Shewanella baltica OS195]
gi|315267811|gb|ADT94664.1| transcription-repair coupling factor [Shewanella baltica OS678]
Length = 1165
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + + L VPV I +
Sbjct: 487 ELKVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSSLHLISRYSV 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ W++ ++ KI +A + D++
Sbjct: 546 GADEDAH--------LNKLGNETWAKAKKKAIEKIR-----DVAAELLDVYARRQSRPGE 592
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E E + R ++ + AI + ++ S ++
Sbjct: 593 SCEID--EEEYAQFARGFPFEETVDQESAIIAVLADMQSPTA 632
>gi|320105780|ref|YP_004181370.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
gi|319924301|gb|ADV81376.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
Length = 1210
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 15/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G+++V+ HG+ ++ + GM LE ++ F ++ L VP+ + I
Sbjct: 522 SDFRDLTVGDYVVHVEHGIAKYMGLRTIDQEGMPLELMILEFA-EQAKLYVPLTRLDLIQ 580
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ ++ G A M + A++ AE+++ + S
Sbjct: 581 KYRTADT-----------GPAPELNKMGGAAWAKTKARVKKAMQDMTAELLKLYAQRQSA 629
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + AI I+ ++ S
Sbjct: 630 EGFVFAPDNNLQR---EFEDAFDFNETDDQLSAIADIKRDMESTQP 672
>gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
gi|224954539|gb|EEG35748.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
Length = 1187
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 59/167 (35%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+++V+ +G+G +++ E G+ + ++ KD L VP +
Sbjct: 510 KINSLSEISVGDYVVHEKYGLGIYRGMEKIESDGITKD-YINIEYKDASNLFVPASQLEL 568
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + + + ++ +++ S IA ++V+
Sbjct: 569 IQKY------------SNLSARKPKLNKLGGTEWEKTKSRVRSQVQIAAQDLVKLYAERQ 616
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +Y + +++ + + + AI + ++ S
Sbjct: 617 AKEGYAYGKDTVWQKEFEEL---FPYEETEDQLSAIEDTKRDMESHR 660
>gi|56707766|ref|YP_169662.1| transcription-repair coupling factor [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670237|ref|YP_666794.1| transcription-repair coupling factor [Francisella tularensis subsp.
tularensis FSC198]
gi|224456837|ref|ZP_03665310.1| transcription-repair coupling factor [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254874578|ref|ZP_05247288.1| transcription-repair coupling factor, ATP-dependent [Francisella
tularensis subsp. tularensis MA00-2987]
gi|56604258|emb|CAG45277.1| Transcription-repair coupling factor,ATP-dependent [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110320570|emb|CAL08660.1| Transcription-repair coupling factor,ATP-dependent [Francisella
tularensis subsp. tularensis FSC198]
gi|254840577|gb|EET19013.1| transcription-repair coupling factor, ATP-dependent [Francisella
tularensis subsp. tularensis MA00-2987]
gi|282158938|gb|ADA78329.1| Transcription-repair coupling factor,ATP-dependent [Francisella
tularensis subsp. tularensis NE061598]
Length = 1141
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + + + ++ K + A ++ + + +
Sbjct: 529 YNSSLTEK------------IALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 576
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 577 GFSNS---LDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|319407247|emb|CBI80886.1| transcription repair coupling factor [Bartonella sp. 1-1C]
Length = 1166
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K + + +G+ +V+ HG+G +K G+ + I + L
Sbjct: 480 PKKRKSNAHFISEIASLNSGDIVVHVDHGIGQFIGLKTIMTTGILRDCLEINYAGGD-RL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+P+ + E + V R +++ KI + AE
Sbjct: 539 FLPIENIELLSRY------GSESTNVTLDKLGSVGWQTRKARLKKHLLKIAGQLICIAAE 592
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R + + + V + + +AIN + +L+S
Sbjct: 593 --RAMRSAPALTPPVGL--------FDEFVACFPYEETDDQMDAINAVLDDLASGKP 639
>gi|126174619|ref|YP_001050768.1| transcription-repair coupling factor [Shewanella baltica OS155]
gi|125997824|gb|ABN61899.1| transcription-repair coupling factor [Shewanella baltica OS155]
Length = 1162
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + + L VPV I +
Sbjct: 487 ELKVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSSLHLISRYSV 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ W++ ++ KI +A + D++
Sbjct: 546 GADEDAH--------LNKLGNETWAKAKKKAIEKIR-----DVAAELLDVYARRQSRPGE 592
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E E + R ++ + AI + ++ S ++
Sbjct: 593 SCEID--EEEYAQFARGFPFEETVDQESAIIAVLADMQSPTA 632
>gi|260072636|gb|ACX30534.1| transcription-repair coupling factor [uncultured SUP05 cluster
bacterium]
gi|269468648|gb|EEZ80288.1| transcription-repair coupling factor (superfamily II helicase)
[uncultured SUP05 cluster bacterium]
Length = 1143
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 26/182 (14%)
Query: 3 FQQKRDAMRQGF----------RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDK 52
Q++R A + F + G+ IV+ +GVG +K Q +F +
Sbjct: 456 QQRRRRAKHKDFDEAIKSLVEIQIGDPIVHENYGVGRYLGLKTQTFDAQTQDFL-MLEYA 514
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
+ L VP+ I + + + + + K +
Sbjct: 515 NGSKLMVPMTSLNLISRYSGASPDSAP------------LHKLGTNQWSKAKKKASEALH 562
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
AE++ + SQ ++ E + + V + + + + + ++ S
Sbjct: 563 DIAAELLEIYAKRQSQTGFAFPEPT---DSYSSFVASFPFEETPDQLKTMEEVLADMQST 619
Query: 173 SS 174
Sbjct: 620 KP 621
>gi|89256268|ref|YP_513630.1| transcription-repair coupling factor [Francisella tularensis subsp.
holarctica LVS]
gi|115314722|ref|YP_763445.1| transcription-repair coupling factor TRCF [Francisella tularensis
subsp. holarctica OSU18]
gi|156502334|ref|YP_001428399.1| transcription-repair coupling factor [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254367605|ref|ZP_04983626.1| transcription-repair coupling factor, ATP-dependent [Francisella
tularensis subsp. holarctica 257]
gi|89144099|emb|CAJ79356.1| Transcription-repair coupling factor,ATP-dependent [Francisella
tularensis subsp. holarctica LVS]
gi|115129621|gb|ABI82808.1| transcription-repair coupling factor TRCF [Francisella tularensis
subsp. holarctica OSU18]
gi|134253416|gb|EBA52510.1| transcription-repair coupling factor, ATP-dependent [Francisella
tularensis subsp. holarctica 257]
gi|156252937|gb|ABU61443.1| transcription-repair coupling factor [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 1141
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S A K + Q+ D+ A +
Sbjct: 529 YNSSLTE----------KIALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGF 578
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S +E + R + + + AIN + ++ S
Sbjct: 579 SNSLNEEEYL-----RFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
Length = 1187
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
++ G+++V+ HG+G I QEV G++ ++F++ + L VP+ + I
Sbjct: 508 YQPGDYVVHATHGIGRFASIVRQEVGGLERDYFLLEYADGD-KLYVPLEQVDRITRY--V 564
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
L + + T+ +R AK + DL+ DL+ S
Sbjct: 565 GPDGSSPRLTRLNTADWSRATVRAR----NSAKRLAFDLV-------DLYTRRSTVAGHA 613
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A M + + + EAI I+ ++ +
Sbjct: 614 FAPDTP--AQLEMEQAFPYEPTRDQIEAIGDIKADMEAPKP 652
>gi|254369252|ref|ZP_04985264.1| transcription-repair coupling factor,ATP-dependent [Francisella
tularensis subsp. holarctica FSC022]
gi|157122202|gb|EDO66342.1| transcription-repair coupling factor,ATP-dependent [Francisella
tularensis subsp. holarctica FSC022]
Length = 1141
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S A K + Q+ D+ A +
Sbjct: 529 YNSSLTE----------KIALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGF 578
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S +E + R + + + AIN + ++ S
Sbjct: 579 SNSLNEEEYL-----RFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|304408993|ref|ZP_07390614.1| transcription-repair coupling factor [Shewanella baltica OS183]
gi|307302996|ref|ZP_07582751.1| transcription-repair coupling factor [Shewanella baltica BA175]
gi|304352814|gb|EFM17211.1| transcription-repair coupling factor [Shewanella baltica OS183]
gi|306913356|gb|EFN43778.1| transcription-repair coupling factor [Shewanella baltica BA175]
Length = 1165
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + + L VPV I +
Sbjct: 487 ELKVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSSLHLISRYSV 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ W++ ++ KI +A + D++
Sbjct: 546 GADEDAH--------LNKLGNETWAKAKKKAIEKIR-----DVAAELLDVYARRQSRPGE 592
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E E + R ++ + AI + ++ S ++
Sbjct: 593 SCEID--EEEYAQFARGFPFEETVDQESAIIAVLADMQSPTA 632
>gi|289664638|ref|ZP_06486219.1| transcription-repair coupling factor [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 1154
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLGSSQP 629
>gi|146319860|ref|YP_001199571.1| transcription-repair coupling factor [Streptococcus suis 98HAH33]
gi|145690666|gb|ABP91171.1| Transcription-repair coupling factor (superfamily II helicase)
[Streptococcus suis 98HAH33]
Length = 845
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G+++V HG+G I+ E++G+ ++ ++ + +PV +
Sbjct: 163 RIKDYSELAVGDYVVPHVHGIGQYLGIETIEISGIHRDYL-TVQYQNSDRISIPVEQIDL 221
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ S GKA + R Q K+ ++++
Sbjct: 222 LSKYLAS------------DGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERS 269
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + V + + +I+ I+ ++ S
Sbjct: 270 QLKGFAFSPD---DENQVEFDNYFTHVETDDQLRSIDEIKKDMEKDSP 314
>gi|290953610|ref|ZP_06558231.1| transcription-repair coupling factor [Francisella tularensis subsp.
holarctica URFT1]
gi|295313111|ref|ZP_06803801.1| transcription-repair coupling factor [Francisella tularensis subsp.
holarctica URFT1]
Length = 1141
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S A K + Q+ D+ A +
Sbjct: 529 YNSSLTE----------KIALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGF 578
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S +E + R + + + AIN + ++ S
Sbjct: 579 SNSLNEEEYL-----RFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|218673155|ref|ZP_03522824.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
GR56]
Length = 585
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G G +V+ HG+G +K E AG + + + L +PV +
Sbjct: 119 AEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 177
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
E L + G A Q AK+ L ++R ++
Sbjct: 178 RY---GGEGTEAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTR 224
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI+ + +L +
Sbjct: 225 HAPVLTTPDGL---YDEFSARFPYDETEDQDNAIDAVRSDLGAGRP 267
>gi|172038623|ref|YP_001805124.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
gi|171700077|gb|ACB53058.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
Length = 1159
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/173 (10%), Positives = 55/173 (31%), Gaps = 23/173 (13%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+K Q G+++V+ +HG+G +++ E+ V+ + L++P
Sbjct: 483 ATSKK--VDLQQLHPGDYVVHKSHGIGKFLKLESL----ATREYLVVQYA--DGILRIPA 534
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + + M + Q+ K+ +++
Sbjct: 535 DSFDSLSRYRHTG------------STPPQLHKMTGKTWQKSKQKVRKNIKKLAVDLINL 582
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Y ++ + + + +AI ++++L S
Sbjct: 583 YAKRAKNTGFTYPLDTPWQ---QELEDSFPYQPTPDQLKAIQDVKIDLESDRP 632
>gi|19552188|ref|NP_600190.1| transcription-repair coupling factor [Corynebacterium glutamicum
ATCC 13032]
Length = 1214
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+ +V+ HG+G ++ E+ ++ ++ + L+
Sbjct: 493 PAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGD-----ETSRREYIVLEYAP 547
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G + ++ + V G+ M + K + E+V
Sbjct: 548 SKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSDWKNAKKKARAAVREIAGELVEL 607
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S P ++ ++ + V + + AI+ ++ ++
Sbjct: 608 YAKRQSAPGHPFAPDTPWQKEME---DNFPYVETEDQMLAIDAVKEDMEKSVP 657
>gi|163815685|ref|ZP_02207057.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
gi|158448990|gb|EDP25985.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
Length = 1186
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 54/159 (33%), Gaps = 16/159 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
G+++V+ +G+G I++ EV G ++ VI + + L V + I + E
Sbjct: 508 SVGDYVVHEKYGIGVYKGIEKIEVDGALKDYLVIEYA-EGGKLYVLASETDRIQKYRSKE 566
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
G+ + Q+ ++ +V+ S+ +YS
Sbjct: 567 ------------GRPPKINRLGGNEWQKVRNRVKGHVDEVAEHLVKLYAERQSKEGHAYS 614
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + AI ++ ++ S
Sbjct: 615 PDSEWQ---KEFEETFPYKETDDQLRAIADVKADMESSR 650
>gi|145295117|ref|YP_001137938.1| hypothetical protein cgR_1060 [Corynebacterium glutamicum R]
gi|140845037|dbj|BAF54036.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 1214
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+ +V+ HG+G ++ E+ ++ ++ + L+
Sbjct: 493 PAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGD-----ETSRREYIVLEYAP 547
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G + ++ + V G+ M + K + E+V
Sbjct: 548 SKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSDWKNAKKKARAAVREIAGELVEL 607
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S P ++ ++ + V + + AI+ ++ ++
Sbjct: 608 YAKRQSAPGHPFAPDTPWQKEME---DNFPYVETEDQMLAIDAVKEDMEKSVP 657
>gi|325922308|ref|ZP_08184088.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
19865]
gi|325547213|gb|EGD18287.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
19865]
Length = 1156
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 486 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 544
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 545 ASAETAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 588
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 589 AGLALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLGSSQP 631
>gi|319794000|ref|YP_004155640.1| transcription-repair coupling factor [Variovorax paradoxus EPS]
gi|315596463|gb|ADU37529.1| transcription-repair coupling factor [Variovorax paradoxus EPS]
Length = 1160
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 33/187 (17%)
Query: 5 QKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GMKLE------FFVI 48
+K++ G+ +V+ AHG+G + ++ G+ E +
Sbjct: 459 KKQEQVSDVEALIKDLSELNVGDPVVHTAHGIGRYRGLMHMDLGQGVDAEGKPLLQEMLH 518
Query: 49 AFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108
DK L VPV + I A E L + K
Sbjct: 519 LEYADKATLYVPVSQLHQISRYTGVSAD--EAPLHRLGSGQ--------------WEKAK 562
Query: 109 SGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEV 167
+ + +L ++ Y +A + + + AI+ +
Sbjct: 563 RKAAEQVRDSAAELLNIYARRAAREGHAFRYSAADYEVFANDFGFQETADQKAAIHAVVQ 622
Query: 168 NLSSKSS 174
++ S
Sbjct: 623 DMISPQP 629
>gi|289667201|ref|ZP_06488276.1| transcription-repair coupling factor [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 1154
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLGSSQP 629
>gi|62389854|ref|YP_225256.1| transcription-repair coupling factor [Corynebacterium glutamicum
ATCC 13032]
gi|41325189|emb|CAF19670.1| PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR [Corynebacterium
glutamicum ATCC 13032]
Length = 1217
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+ +V+ HG+G ++ E+ ++ ++ + L+
Sbjct: 496 PAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGD-----ETSRREYIVLEYAP 550
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G + ++ + V G+ M + K + E+V
Sbjct: 551 SKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSDWKNAKKKARAAVREIAGELVEL 610
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S P ++ ++ + V + + AI+ ++ ++
Sbjct: 611 YAKRQSAPGHPFAPDTPWQKEME---DNFPYVETEDQMLAIDAVKEDMEKSVP 660
>gi|217973128|ref|YP_002357879.1| transcription-repair coupling factor [Shewanella baltica OS223]
gi|217498263|gb|ACK46456.1| transcription-repair coupling factor [Shewanella baltica OS223]
Length = 1162
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + + L VPV I +
Sbjct: 487 ELKVGQPIVHLEHGVALYKGLVTLDTGGLLAEYLQLEYAGGD-KLYVPVSSLHLISRYSV 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ W++ ++ KI +A + D++
Sbjct: 546 GADEDAH--------LNKLGNETWAKAKKKAIEKIR-----DVAAELLDVYARRQSRPGE 592
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E E + R ++ + AI + ++ S ++
Sbjct: 593 SCEID--EEEYAQFARGFPFEETVDQESAIIAVLADMQSPTA 632
>gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme
DSM 15981]
gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme
DSM 15981]
Length = 1221
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
Q K G+++V+ HG+G I++ E + ++ I D L +P +
Sbjct: 539 QGKAIQSFSELAVGDYVVHEEHGLGIYRGIEKVERDKITKDYIKIE-YGDGGNLYLPATR 597
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I +EA K + + +++ ++V+
Sbjct: 598 LESIQKYAGAEA------------KKPKLNRLGGSEWSKTKSRVKGAVQEIAKDLVKLYA 645
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y + +++ + + + +AI+ ++ ++ S+
Sbjct: 646 ARQEKAGFQYGKDTVWQREFEEL---FPYDETDDQLDAIDSVKHDMESRK 692
>gi|254480585|ref|ZP_05093832.1| transcription-repair coupling factor [marine gamma proteobacterium
HTCC2148]
gi|214039168|gb|EEB79828.1| transcription-repair coupling factor [marine gamma proteobacterium
HTCC2148]
Length = 1154
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 45/165 (27%), Gaps = 18/165 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R G +V+ HGVG ++ V + EF + + K L VPV I
Sbjct: 476 DINELREGVPVVHLEHGVGRYVGLQTLSVDEQEAEFLTLEYAK-GSKLYVPVASLHLISR 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S+ L + E K ++ L ++
Sbjct: 535 YAGSDPDLAP--LHTLGS--------------EQWDKARRKASEKANDIAAQLLEVYARR 578
Query: 130 EKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E + ++ + + I + ++ S
Sbjct: 579 EARTGYAFTLDQDKYSQFSAAFPFEETPDQELTIRAVVEDMCSPR 623
>gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus
Ab9]
gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus
Ab9]
Length = 1163
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 53/169 (31%), Gaps = 18/169 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G ++V+ +G+G I++ +V G+ ++ I + L VPV +
Sbjct: 494 RIKNFTELEVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGGD-TLFVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ ++ K A+ ++ +DL +
Sbjct: 553 VQKYV----------------GPTDNPPKLNKLGGSEWLKAKRKAKKAVEDLAKDLIQLY 596
Query: 127 SQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + ++ R + + + I I+ ++
Sbjct: 597 AKRQIAKGHAFSPDTPWQREFEEQFPYEETEDQLRCIKEIKEDMEKDKP 645
>gi|218460982|ref|ZP_03501073.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
Kim 5]
Length = 825
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G G +V+ HG+G +K E AG + + + L +PV +
Sbjct: 154 AEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 212
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ L + G A Q AK+ L ++R ++
Sbjct: 213 RY---GGEGTDAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTR 259
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI+ + +L +
Sbjct: 260 HAPVLTTPDGL---YDEFAARFPYDETEDQDNAIDAVRSDLGAGRP 302
>gi|319405678|emb|CBI79301.1| transcription repair coupling factor [Bartonella sp. AR 15-3]
Length = 1166
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 21/177 (11%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K + + +G+ +V+ HG+G +K G+ + I + L
Sbjct: 480 PKKRKSNAHFISEIASLNSGDIVVHVDHGIGQFIGLKTIMATGILRDCLEINYAGGD-RL 538
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+P+ + E + V R +++ KI +G LI IA
Sbjct: 539 FLPIENIELLSRY------GSESTNITLDKLGSVGWQTRKARLKKHLLKI-AGQLICIAA 591
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
P + V + + +AIN + +L+S
Sbjct: 592 ERATRSAPALTPPAGLFDE---------FVACFPYEETDDQMDAINAVLDDLASGKP 639
>gi|284040349|ref|YP_003390279.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
gi|283819642|gb|ADB41480.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
Length = 1126
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 57/165 (34%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ + G+++ + +G+G +++ + G + E + +D L V + I
Sbjct: 444 ELKTLQPGDYVTHVDYGIGRFAGLEKVDHGGNEQEAIRL-IYRDNDILLVSIHSLHKIAK 502
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
E G + S+ ++ ++I E++ + + P
Sbjct: 503 YSGRE------------GGPPTMSKLGSQEWEQKKSRIRKQVKDIARELIALYAKRRTAP 550
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS ++ + ++ + +A N ++ ++
Sbjct: 551 GYAYSRDSFLQA---ELESSFLYEDTPDQAKATNDVKDDMERPHP 592
>gi|21323730|dbj|BAB98356.1| Transcription-repair coupling factor - superfamily II helicase
[Corynebacterium glutamicum ATCC 13032]
Length = 1209
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ G+ +V+ HG+G ++ E+ ++ ++ + L+
Sbjct: 488 PAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGD-----ETSRREYIVLEYAP 542
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
K G + ++ + V G+ M + K + E+V
Sbjct: 543 SKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSDWKNAKKKARAAVREIAGELVEL 602
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S P ++ ++ + V + + AI+ ++ ++
Sbjct: 603 YAKRQSAPGHPFAPDTPWQKEME---DNFPYVETEDQMLAIDAVKEDMEKSVP 652
>gi|239815560|ref|YP_002944470.1| transcription-repair coupling factor [Variovorax paradoxus S110]
gi|239802137|gb|ACS19204.1| transcription-repair coupling factor [Variovorax paradoxus S110]
Length = 1165
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 33/187 (17%)
Query: 5 QKRDA---------MRQGFRTGEHIVYPAHGVGTITEIKEQEVA-GMKLE------FFVI 48
+K++ G+ +V+ AHG+G + ++ G E +
Sbjct: 464 KKQEQVSDVEALIKDLSELNVGDPVVHTAHGIGRYRGLIHMDLGQGTDAEGKPLLQEMLH 523
Query: 49 AFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKIN 108
DK L VPV + I A E L + K
Sbjct: 524 LEYADKATLYVPVSQLHQISRYTGVSAD--EAPLHKLGSGQ--------------WEKAK 567
Query: 109 SGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEV 167
+ + +L ++ Y +A + + + AI+ +
Sbjct: 568 RKAAEQVRDSAAELLNIYARRAARQGHAFRYSAADYEVFANDFGFQETADQKAAIHAVVQ 627
Query: 168 NLSSKSS 174
++ S
Sbjct: 628 DMISPQP 634
>gi|315612154|ref|ZP_07887069.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
49296]
gi|315315715|gb|EFU63752.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
49296]
Length = 1167
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIQGIHRD-YVSVQYQNGDQISIPVEQIQLLSKYVS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++
Sbjct: 595 FSADDDDQHAFDDA---FPYVETDDQLRSIEEIKRDMQDSHP 633
>gi|295136419|ref|YP_003587095.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
gi|294984434|gb|ADF54899.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
Length = 1126
Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/174 (10%), Positives = 54/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G K E + ++ L +
Sbjct: 421 AKKQAITLKELTNLTVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKL-IYGERDILYLS 479
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S + K + ++
Sbjct: 480 IHSLHKISKYNG------------KDGKEPKIFKLGSNAWKNLKKKTKARVKHIAYNLIE 527
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q +Y + + + ++ + A ++ ++ ++
Sbjct: 528 LYAKRRLQKGFAYGPDSYLQ---HELEASFIYEDTPDQSTATEAVKKDMENERP 578
>gi|254527187|ref|ZP_05139239.1| transcription-repair coupling factor [Prochlorococcus marinus str.
MIT 9202]
gi|221538611|gb|EEE41064.1| transcription-repair coupling factor [Prochlorococcus marinus str.
MIT 9202]
Length = 1169
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 56/176 (31%), Gaps = 22/176 (12%)
Query: 4 QQKRDAMRQ-----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K+ ++ G+ IV+ HG+G +I++ + G ++ VI + +
Sbjct: 476 RRKKRSVNSNINVNKINPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQY--QDGKIS 533
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + S + + K ++
Sbjct: 534 VAADQLGSVNRYRSSGK------------IKPKINKLGGTEWERIKDKNKKQIKKVAVDI 581
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + Y E ++ + + + + A+ I+ ++ S
Sbjct: 582 LKLYAKREKLKGYIYPEDGPWQ---DELEESFPYQPTPDQITAVEEIKSDMESDKP 634
>gi|13235409|emb|CAC33609.1| Mfd protein [Rickettsia montanensis]
Length = 1121
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G ++ E+ G +F I + + L +
Sbjct: 443 TNKRLKNILLELDNLAEGEFVVHKDHGIGQFLRLEALEIKGKPHDFLKILYAGND-KLYI 501
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A ++ W R + +I L I
Sbjct: 502 PVESIEVIKKYGNDNAEL-----------DKLGSVSWQRSKAKLKKRIKEIALHLIQIAA 550
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 551 KRKLSSSAPVEFDLEE-------YDKFCANFPFSETEDQLTAINDIKEDLRNG 596
>gi|297622390|ref|YP_003703824.1| transcription-repair coupling factor [Truepera radiovictrix DSM
17093]
gi|297163570|gb|ADI13281.1| transcription-repair coupling factor [Truepera radiovictrix DSM
17093]
Length = 1006
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 18/170 (10%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
+R G+++++P HG+G ++ ++V G+ ++ ++ + L +PV +
Sbjct: 341 RRVQDAVQLSAGDYLIHPDHGIGRFMGLEPRQVLGVTRDYLILQYAGAG-KLYLPVEQLP 399
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + T+ + + G +++R
Sbjct: 400 LLRRHPGTTDD------------PPRLSTLGTNEWARARERARVGAQELALKLIRTYAER 447
Query: 126 DSQPEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKSS 174
Q + + ++ E + + A + +++
Sbjct: 448 QLQQGLAM----PANPEWDPLIDENCPFELTPDQKSATQAVLHDMARPVP 493
>gi|157803549|ref|YP_001492098.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel]
gi|157784812|gb|ABV73313.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel]
Length = 1119
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I + + L +
Sbjct: 441 TNKKLKNILLELDNLAEGEFVVHKDHGIGKFLKLEALEIKGKLHDFLKILYAGND-KLYI 499
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I + S Q AK+ + ++
Sbjct: 500 PVENIEVIKKY---------------GNDNAELDKLGSVSWQRSKAKLKNRIKEIALHLI 544
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + + + ++ + + AIN I +L S
Sbjct: 545 QIAAQR---KLNTNASIEFDLEEYDKFCAHFPFSETEDQLTAINDIREDLRSG 594
>gi|237756331|ref|ZP_04584882.1| transcription-repair-coupling factor [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691501|gb|EEP60558.1| transcription-repair-coupling factor [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 624
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 59/169 (34%), Gaps = 18/169 (10%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K + + + G++I++ G+G I+ +E+ G +F ++ + + V
Sbjct: 259 KLELDVEPLKEGDYIIHEDFGIGIYRGIETREIRGKVYDFMILEYAG-GEKVYVSYLHFD 317
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I K + +++ S R + K + ++ + +
Sbjct: 318 KIHKYKTNSIIQIDKIGGT------------SWRNLKKKVKESLKNIAKNLLEIYSKRQN 365
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+P + + ++ RE V + + +AI I+ + S
Sbjct: 366 IYRPPLKTDDELI-----SKFEREFPFVETPDQIKAIKDIKSDFSKPKP 409
>gi|260435284|ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
Length = 1203
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 16/175 (9%), Positives = 54/175 (30%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G +++ ++G ++ V+ + L+V
Sbjct: 496 RRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYA--DGILRV 553
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + M + + ++V
Sbjct: 554 AADQLGSLGRYRATS------------ETPPQLNRMGGTAWNKAKERAKKAVRKVALDLV 601
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + + + +A ++ ++ +
Sbjct: 602 KLYAERQQAAGFAFPTDGPWQVEME---ESFPYDPTPDQLKATADVKRDMERQEP 653
>gi|78212830|ref|YP_381609.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
gi|78197289|gb|ABB35054.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
Length = 1192
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 16/175 (9%), Positives = 54/175 (30%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G +++ ++G ++ V+ + L+V
Sbjct: 485 RRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYA--DGILRV 542
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + M + + ++V
Sbjct: 543 AADQLGSLGRYRATS------------ETPPQLNRMGGTAWNKAKERAKKAVRKVALDLV 590
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + + + +A ++ ++ +
Sbjct: 591 KLYAERQQAAGFAFPTDGPWQVEME---ESFPYDPTPDQLKATADVKRDMERQEP 642
>gi|222085973|ref|YP_002544505.1| transcription-repair coupling factor [Agrobacterium radiobacter
K84]
gi|221723421|gb|ACM26577.1| transcription-repair coupling factor [Agrobacterium radiobacter
K84]
Length = 1166
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G G +V+ HG+G ++ E AG + + L +PV +
Sbjct: 495 SEVAGLDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELQYAD-DAKLFLPVENIDLLS 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
E L + G A Q AK+ L ++R ++
Sbjct: 554 RY---GGEGTEAQLDKLGGGA----------WQMRKAKLKKRLLDMAGALIRIAAERLTR 600
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S + + + AI + +L +
Sbjct: 601 HAPVLSTPDGL---YDEFAARFPYDETEDQMNAIEAVRDDLGAGRP 643
>gi|153000915|ref|YP_001366596.1| transcription-repair coupling factor [Shewanella baltica OS185]
gi|151365533|gb|ABS08533.1| transcription-repair coupling factor [Shewanella baltica OS185]
Length = 1162
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ HGV + + G+ E+ + + L VPV I +
Sbjct: 487 ELKVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGD-KLYVPVSSLHLISRYSV 545
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ W++ ++ KI +A + D++
Sbjct: 546 GADEDAH--------LNKLGNETWAKAKKKAIEKIR-----DVAAELLDVYARRQSRPGE 592
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E E + R ++ + AI + ++ S ++
Sbjct: 593 SCEID--EDEYAQFARGFPFEETVDQESAIIAVLADMQSPTA 632
>gi|34581455|ref|ZP_00142935.1| transcription-repair coupling factor [Rickettsia sibirica 246]
gi|28262840|gb|EAA26344.1| transcription-repair coupling factor [Rickettsia sibirica 246]
Length = 1122
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I + + L +
Sbjct: 444 TNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYI 502
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A ++ W R + +I L I
Sbjct: 503 PVESIEVIKKYGNDNAEL-----------DKLGSVSWQRSKAKLKKRIKEIALHLIQIAA 551
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 552 KRKLNSSASVEFDLEE-------YDKFCANFPFSETEDQLIAINDIKEDLRNG 597
>gi|51473776|ref|YP_067533.1| transcription-repair coupling factor [Rickettsia typhi str.
Wilmington]
gi|81856448|sp|Q9AKD5|MFD_RICTY RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|13235382|emb|CAC33732.1| Mfd protein [Rickettsia typhi]
gi|51460088|gb|AAU04051.1| transcription-repair coupling factor (superfamily helicase II)
[Rickettsia typhi str. Wilmington]
Length = 1120
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I L V
Sbjct: 442 TNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEAFEIQGKLHDFLKI-LYSGNDKLYV 500
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I + ++ W + + +I L I
Sbjct: 501 PVENIEVIKKYGSNNVEL-----------DKLGSAAWHKSKAKLKDRIKEISLHLIQIAA 549
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + + ++ + + + AIN I +L++
Sbjct: 550 K-------RKLNISTPIEFDLEEYDKFCANFPFIETEDQLTAINDIRKDLTNG 595
>gi|288941951|ref|YP_003444191.1| transcription-repair coupling factor [Allochromatium vinosum DSM
180]
gi|288897323|gb|ADC63159.1| transcription-repair coupling factor [Allochromatium vinosum DSM
180]
Length = 1160
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 42/163 (25%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ HGVG ++ EV G+ EF + + L VPV I
Sbjct: 491 TELTEGAPVVHEEHGVGRYLGLQTLEVGGLTTEFLTLEYANGD-KLYVPVSALQLISRYT 549
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ A + D+ A +
Sbjct: 550 GASPE----------NAPLHRLGGDQWERIKHRAAQKAHDVAAELLDIHARRAARQGVAF 599
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + + AI + +++
Sbjct: 600 PEGGEDYAAFAAAF-----PFEETPDQQRAIESVLADMADPKP 637
>gi|67458759|ref|YP_246383.1| transcription-repair coupling factor [Rickettsia felis URRWXCal2]
gi|75536784|sp|Q4UMJ0|MFD_RICFE RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|67004292|gb|AAY61218.1| Transcription-repair coupling factor [Rickettsia felis URRWXCal2]
Length = 1142
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I + + L +
Sbjct: 443 TNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGND-KLYI 501
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A ++ + W R + +I L I
Sbjct: 502 PVENIEVIKKYGNDNAEL-----------DKLGSSSWQRSKAKLKNRIKEIALHLIQIAA 550
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 551 KRKLNSSASVEFDLEE-------YDKFCANFPFSETEDQLTAINDIKEDLRNG 596
>gi|332071328|gb|EGI81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
GA17545]
Length = 1169
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGLA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|169335625|ref|ZP_02862818.1| hypothetical protein ANASTE_02045 [Anaerofustis stercorihominis DSM
17244]
gi|169258363|gb|EDS72329.1| hypothetical protein ANASTE_02045 [Anaerofustis stercorihominis DSM
17244]
Length = 170
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD-KDKMCLKVPVGKA-IDIGMR 70
++ E I+Y GV I+EI E+ G K +++++ K+ M + VPV MR
Sbjct: 1 MYKVDEIILYDTEGVCRISEITEKTFGGKKQKYYILNTVSKNSMTIYVPVDNEKQTSKMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
K+ + + + ++ + + + R + Y I SGD + +++R LH Q
Sbjct: 61 KILSSDEIYKLIRNMPNEDLIWIENDGERKETYKQIIQSGDRRGLIKIIRTLHFQKEQLT 120
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ S+ Q +SA + E + V I + I I L
Sbjct: 121 KQGKKLHMSDEQFMKSAQKILHEEFSHVLKIEPNQVIPFIVNELK 165
>gi|261253317|ref|ZP_05945890.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
gi|260936708|gb|EEX92697.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
Length = 1153
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ HG+G ++ E GM E +V +++ L VPV I
Sbjct: 479 ELQPGQPVVHIDHGIGRYIGLQTLEAGGMVTE-YVTLEYQNEAKLYVPVASLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + G+A K + + +V +L ++ E
Sbjct: 538 GAEDGAP--IHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGYKFELDRGQYATFKAGFPFEETDDQSMAINAVMSDMCQAKA 624
>gi|15807459|ref|NP_296192.1| hypothetical protein DR_2472 [Deinococcus radiodurans R1]
gi|6460292|gb|AAF12015.1|AE002076_7 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 169
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 1/157 (0%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
+ FR G+ +V P +G+G ++ + +G ++ + F + VP
Sbjct: 3 SMKQTAFRPGDRVVLPPYGLGIVSGTCQHTRSGEGCWYYQVDFPESGHLALVPTHSPDQA 62
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
G+R + + + S R ++ + + G +A ++ +L+R
Sbjct: 63 GLRPALRQRELRALRQALERGQLELARQCSSRQRQVNEVLRLGQPTQLALLIAELYRWQR 122
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
Q +RQ A+ + +E++ + S+ AI
Sbjct: 123 QRPLPDLDRQALRQAIRLLQQEVSGLED-SQALAIRD 158
>gi|313888106|ref|ZP_07821780.1| transcription-repair coupling factor [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845796|gb|EFR33183.1| transcription-repair coupling factor [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 1159
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+++V+ AHGVG + EV+G++ ++ +I + L +P+ I K
Sbjct: 490 EDLQIGDYVVHEAHGVGKYVGTRRLEVSGIQKDYILIE-YGGEDKLFLPIEALDSI--YK 546
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + S ++ A+ ++++ ++
Sbjct: 547 YVQEG----------NRPPKVNKLNSLDWKKKKARARQSIDDMAEDLIKLYATRENTKGF 596
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++SE Y+ + + ++ I+ ++ S
Sbjct: 597 AFSEDSQYQR---EFEDAFIYEETPGQLKSAEEIKEDMEKASP 636
>gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
Length = 1168
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 17/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +V+ HG+G I++ +V G++ ++ VI K L +P + +
Sbjct: 500 SDLNIDDFVVHENHGIGQYKGIEKIDVNGIQKDYIVI-QYKANDRLMIPTDQMNLVQKYI 558
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
KL AK ++ E+ DL S+ K
Sbjct: 559 GGGNIKKPSLNKLSGND---------------WAKAKQKAKKSVDEMADDLVELYSKRAK 603
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ R + S+ +I I+ ++ S
Sbjct: 604 LKGYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKTDMESDRP 647
>gi|301310728|ref|ZP_07216667.1| transcription-repair coupling factor [Bacteroides sp. 20_3]
gi|300832302|gb|EFK62933.1| transcription-repair coupling factor [Bacteroides sp. 20_3]
Length = 1120
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++IV+ HGVG + EV G E + ++ + V + +
Sbjct: 427 ELNQFSQGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIKL-IYQNNDIIFVSIHSLHKLSK 485
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E+ + KL G K+ + ++ RDL S+
Sbjct: 486 YKGKESGEPPKLSKLGTGA---------------WEKMKERTKAKVKDIARDLILLYSKR 530
Query: 130 EKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +S + + ++ + +A ++ ++ S
Sbjct: 531 KQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRP 576
>gi|256839562|ref|ZP_05545071.1| transcription-repair coupling factor [Parabacteroides sp. D13]
gi|256738492|gb|EEU51817.1| transcription-repair coupling factor [Parabacteroides sp. D13]
Length = 1145
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++IV+ HGVG + EV G E + ++ + V + +
Sbjct: 452 ELNQFSQGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIKL-IYQNNDIIFVSIHSLHKLSK 510
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E+ + KL G K+ + ++ RDL S+
Sbjct: 511 YKGKESGEPPKLSKLGTGA---------------WEKMKERTKAKVKDIARDLILLYSKR 555
Query: 130 EKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +S + + ++ + +A ++ ++ S
Sbjct: 556 KQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRP 601
>gi|15892836|ref|NP_360550.1| transcription-repair coupling factor [Rickettsia conorii str.
Malish 7]
gi|81854092|sp|Q92H58|MFD_RICCN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|15620021|gb|AAL03451.1| transcription-repair coupling factor [Rickettsia conorii str.
Malish 7]
Length = 1122
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I + + L +
Sbjct: 444 TNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYI 502
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A ++ W R + +I L I
Sbjct: 503 PVESIEVIKKYGNDNAEL-----------DKLGSVSWQRSKAKLKKRIKEIALHLIQIAA 551
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 552 KRKLNSSASVEFDLEE-------YDKFCANFPFSETEDQLIAINDIKEDLRNG 597
>gi|241890049|ref|ZP_04777347.1| transcription-repair coupling factor [Gemella haemolysans ATCC
10379]
gi|241863671|gb|EER68055.1| transcription-repair coupling factor [Gemella haemolysans ATCC
10379]
Length = 1183
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 17/173 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++ Q G++IV+ +HG+G I+ EV G+ +F I + V +
Sbjct: 471 TNSEKIRNYQELNIGDYIVHVSHGIGLYEGIENVEVGGVFKDFLKI-VYDGGDIIYVDIN 529
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I S + ++ + K S I ++ DL
Sbjct: 530 NMNYIQKYTASTDNRKPAL---------------NKLGTKNWQKTKSRVRKEIEDISEDL 574
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + E S + +L + + + + +A I+ ++ +
Sbjct: 575 IKLYIKRELSSGYAYSIDGSLQAEFEADFSFTPTEDQVKATEEIKRDMEKERP 627
>gi|189423769|ref|YP_001950946.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
gi|189420028|gb|ACD94426.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
Length = 1165
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 53/173 (30%), Gaps = 19/173 (10%)
Query: 4 QQKRD-AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ K+ A + G+ +V+ HG+G ++ + ++ +F ++ + + L +P+
Sbjct: 491 RTKQILASLAELKPGDAMVHVDHGIGIYRGLQHLKTGAVEGDFLLLEYAGND-KLYLPID 549
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + E A G K S I E+ +L
Sbjct: 550 RLGLVQRYAGGEGATPAPARLGGPG----------------WEKTRSKARKNIEELAAEL 593
Query: 123 HRTDSQPEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + S + + + AI + ++
Sbjct: 594 LEVYAKRQASQGYSFSPPDELFREFEATFPWEETPDQLSAIQDVLGDMQHSRP 646
>gi|239906714|ref|YP_002953455.1| transcription-repair coupling factor [Desulfovibrio magneticus
RS-1]
gi|239796580|dbj|BAH75569.1| transcription-repair coupling factor [Desulfovibrio magneticus
RS-1]
Length = 1148
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/160 (11%), Positives = 44/160 (27%), Gaps = 16/160 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
R G+ +V+ +GV T + V ++ ++ F + L +P + + K E
Sbjct: 482 RPGDLVVHRDYGVATFEGLTRMTVDATGGDYLLLVFADED-KLYLPADRLGLLQRYKGPE 540
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
G + + R + + A++V +Y
Sbjct: 541 ------------GISPPLDRLGGARWKSVRERAKKAVERIAADLVEMYAYRQVAKGYAYG 588
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + AI + ++
Sbjct: 589 PTNEL---YLEFEATFGFEETPDQERAIGEVLADMERPEP 625
>gi|134302051|ref|YP_001122020.1| transcription-repair coupling factor [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134049828|gb|ABO46899.1| transcription-repair coupling factor [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 1141
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 473 DLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISIYNS 531
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S + + + ++ K + A ++ + + + S
Sbjct: 532 SLTEK------------IALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFS 579
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S L E R + + + AIN + ++ S
Sbjct: 580 NS---LDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|298375260|ref|ZP_06985217.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19]
gi|298267760|gb|EFI09416.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19]
Length = 1120
Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++IV+ HGVG + EV G E + ++ + V + +
Sbjct: 427 ELNQFSQGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIKL-IYQNNDIIFVSIHSLHKLSK 485
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E+ + KL G K+ + ++ RDL S+
Sbjct: 486 YKGKESGEPPKLSKLGTGA---------------WEKMKERTKAKVKDIARDLILLYSKR 530
Query: 130 EKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +S + + ++ + +A ++ ++ S
Sbjct: 531 KQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRP 576
>gi|262382158|ref|ZP_06075296.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262297335|gb|EEY85265.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 1127
Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++IV+ HGVG + EV G E + ++ + V + +
Sbjct: 434 ELNQFSQGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIKL-IYQNNDIIFVSIHSLHKLSK 492
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E+ + KL G K+ + ++ RDL S+
Sbjct: 493 YKGKESGEPPKLSKLGTGA---------------WEKMKERTKAKVKDIARDLILLYSKR 537
Query: 130 EKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +S + + ++ + +A ++ ++ S
Sbjct: 538 KQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRP 583
>gi|291278661|ref|YP_003495496.1| transcription-repair coupling factor [Deferribacter desulfuricans
SSM1]
gi|290753363|dbj|BAI79740.1| transcription-repair coupling factor [Deferribacter desulfuricans
SSM1]
Length = 1111
Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 62/168 (36%), Gaps = 18/168 (10%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
G+++V+ +G+G I+ +E+ G+K ++ + F+ L +P+ +
Sbjct: 441 KTNISDLEEGDYVVHVDYGIGIYRGIENKEIGGIKGDYIKVEFEN-GENLYIPISNIGLL 499
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
+ +G + S R ++ + ++++ S
Sbjct: 500 QKYIGT------------KGGTPKLSNLQSNRWKKLKEQAYKSAKKLAVDILKIYAERKS 547
Query: 128 QPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++++ ++ ++ R + + IN + ++ S++
Sbjct: 548 RRGFAFTKSGEILKTVELR----FPYEETEDQIVVINEVFNDMESETP 591
>gi|34496601|ref|NP_900816.1| transcription-repair coupling factor [Chromobacterium violaceum
ATCC 12472]
gi|34102455|gb|AAQ58821.1| transcription-repair coupling factor [Chromobacterium violaceum
ATCC 12472]
Length = 1130
Score = 86.0 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ AHG+G + ++ + E + D L VPV + I
Sbjct: 462 DLAEVKAGDPVVHEAHGIGRYVGLVTMDLGEGETE-LMQLEYADGATLYVPVSQLQLISR 520
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
++ L + A K + +L +Q
Sbjct: 521 YAGGATDDIQ--LHKLGNPA--------------WEKAKKRAAEKARDTAAELLNLYAQR 564
Query: 130 EKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + + AI + ++ S
Sbjct: 565 AAREGHSFTLSHADYAAFAAGFGFEETPDQATAIEAVIQDMCSGKP 610
>gi|255657458|ref|ZP_05402867.1| transcription-repair coupling factor [Clostridium difficile
QCD-23m63]
gi|296449053|ref|ZP_06890843.1| transcription-repair coupling factor [Clostridium difficile NAP08]
gi|296879876|ref|ZP_06903849.1| transcription-repair coupling factor [Clostridium difficile NAP07]
gi|296262146|gb|EFH08951.1| transcription-repair coupling factor [Clostridium difficile NAP08]
gi|296429165|gb|EFH15039.1| transcription-repair coupling factor [Clostridium difficile NAP07]
Length = 1128
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ GVG T I++ V +K ++ I + L VP+ + +
Sbjct: 491 DLSVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKI-VYQGGDNLYVPIDQMDKVQKYIG 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E V+ ++ K + I ++ +DL ++ EK
Sbjct: 550 AEVEKVKL----------------NKLGTNEWTKAKAKVKKEIEDMTKDLIELYAKREKI 593
Query: 133 YSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + +AI + ++ S
Sbjct: 594 QGYKFSKDTPWQAEFESLFPYQETEDQLKAIEETKKDMESSK 635
>gi|221639209|ref|YP_002525471.1| transcription-repair coupling factor [Rhodobacter sphaeroides
KD131]
gi|221159990|gb|ACM00970.1| Transcription-repair coupling factor [Rhodobacter sphaeroides
KD131]
Length = 1168
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 53/185 (28%), Gaps = 32/185 (17%)
Query: 2 TFQQKRD----AMRQGFRTGEHIVYPAHGVGTITEIKEQEV-------AGMKLEFFVIAF 50
++++ G+ +V+ HGVG ++ V G ++ +
Sbjct: 464 PKKRRKAENFLREHDTLTPGDLVVHVEHGVGRYMGLETLRVPQPPSNKPGPPHDYLHL-V 522
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
++ L +PV + E L + G A +
Sbjct: 523 YAEEAKLYLPVENIELLSRY-----GHEEGLLDKLGGGA--------------WQAKKAR 563
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
I E+ L R ++ ++ + S + + AI + +L
Sbjct: 564 LKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSARFPYQETDDQLSAIADVVKDL 623
Query: 170 SSKSS 174
S S
Sbjct: 624 ESGSP 628
>gi|95930005|ref|ZP_01312745.1| transcription-repair coupling factor [Desulfuromonas acetoxidans
DSM 684]
gi|95133974|gb|EAT15633.1| transcription-repair coupling factor [Desulfuromonas acetoxidans
DSM 684]
Length = 1158
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + +++V+ HG+G +++ +GM +F + + M L +PV + +
Sbjct: 489 SSLAELKERDYVVHADHGIGLYLGLEQLSSSGMSGDFLKLEYAGGDM-LYLPVERIEKVQ 547
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
A ++ G +T RA A+ E+ R+L ++
Sbjct: 548 KY---AAGDLQSVRLDKMGGTAWAKTCQKARA-------------AVEEMARELLTIYAR 591
Query: 129 PEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + + + AI + ++ S
Sbjct: 592 REMAEAFTFSPPDDVFRSFEAAFPYEETADQMAAIQDVLEDMQSGRP 638
>gi|254977126|ref|ZP_05273598.1| transcription-repair coupling factor [Clostridium difficile
QCD-66c26]
gi|255094455|ref|ZP_05323933.1| transcription-repair coupling factor [Clostridium difficile CIP
107932]
gi|255316206|ref|ZP_05357789.1| transcription-repair coupling factor [Clostridium difficile
QCD-76w55]
gi|255518868|ref|ZP_05386544.1| transcription-repair coupling factor [Clostridium difficile
QCD-97b34]
gi|255652047|ref|ZP_05398949.1| transcription-repair coupling factor [Clostridium difficile
QCD-37x79]
gi|260685021|ref|YP_003216306.1| transcription-repair coupling factor [Clostridium difficile CD196]
gi|260688679|ref|YP_003219813.1| transcription-repair coupling factor [Clostridium difficile R20291]
gi|260211184|emb|CBA66656.1| transcription-repair coupling factor [Clostridium difficile CD196]
gi|260214696|emb|CBE07346.1| transcription-repair coupling factor [Clostridium difficile R20291]
Length = 1128
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ GVG T I++ V +K ++ I + L VP+ + +
Sbjct: 491 DLSVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKI-VYQGGDNLYVPIDQMDKVQKYIG 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E V+ ++ K + I ++ +DL ++ EK
Sbjct: 550 AEVEKVKL----------------NKLGTNEWTKAKAKVKKEIEDMTKDLIELYAKREKI 593
Query: 133 YSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + +AI + ++ S
Sbjct: 594 QGYKFSKDTPWQAEFESLFPYQETEDQLKAIEETKKDMESSK 635
>gi|218295465|ref|ZP_03496278.1| transcription factor CarD [Thermus aquaticus Y51MC23]
gi|218244097|gb|EED10623.1| transcription factor CarD [Thermus aquaticus Y51MC23]
Length = 699
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 55/167 (32%), Gaps = 18/167 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +++P HG+G ++ +EV G++ ++ V+ + + L +PV +
Sbjct: 35 SDPGALSPGDFLIHPEHGIGQYLGLETREVLGVRRDYLVL-RYRGEGRLYLPVEGLPLLK 93
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ ++ Q K + E+ L ++
Sbjct: 94 RHPGTTDD------------PPELSSLGKGEWQRAKEKARK----DVEELAARLLVLHAK 137
Query: 129 PEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +V + + +A+ + +L S
Sbjct: 138 RKATPGRAFPALPEWDPLVEAGFPHELTPDQRQALEEVLRDLESPHP 184
>gi|157413397|ref|YP_001484263.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9215]
gi|157387972|gb|ABV50677.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9215]
Length = 1169
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 56/176 (31%), Gaps = 22/176 (12%)
Query: 4 QQKRDAMRQ-----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K+ ++ G+ IV+ HG+G +I++ + G ++ VI + +
Sbjct: 476 RRKQRSVNSNINVNKISPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQY--QDGKIS 533
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + S + + K ++
Sbjct: 534 VAADQLGSVNRYRSSGK------------IKPKINKLGGTEWERIKDKNKKQIKKVAVDI 581
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + Y E ++ + + + + A+ I+ ++ S
Sbjct: 582 LKLYAKREKLKGYIYPEDGPWQ---DELEESFPYQPTPDQITAVEEIKSDMESDKP 634
>gi|116626459|ref|YP_828615.1| transcription-repair coupling factor [Candidatus Solibacter
usitatus Ellin6076]
gi|116229621|gb|ABJ88330.1| transcription-repair coupling factor [Candidatus Solibacter
usitatus Ellin6076]
Length = 1141
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 16/173 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T ++ A + G+++V+ HGV ++E + ++ V+ L VP+
Sbjct: 466 TARETFSADIIDLKPGDYVVHSEHGVAQYLGLREISGGENQGDYMVLE-YSGGAKLYVPL 524
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + + R+ W+R AK+ E+++
Sbjct: 525 TRIDLVQRFRGGGE--------TKPALDRMGGATWTRTKGRIKAKMR----DMADELLKL 572
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS ++ + + AI+ I+ ++ S
Sbjct: 573 YASRKMAEGFNYSSDSNWQR---EFEDAFEFSPTRDQLTAISEIKRDMESTQP 622
>gi|288574800|ref|ZP_06393157.1| transcription-repair coupling factor [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570541|gb|EFC92098.1| transcription-repair coupling factor [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 1014
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F + +V+ HG+ ++ E + + EF V+ F +DK L +P G+ I K S
Sbjct: 364 FEARDWLVHEDHGLCRYGGLESVEGSWGRQEFLVLEF-QDKKRLLLPTGQISRISPYKGS 422
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
++ V + S R K E++ + ++
Sbjct: 423 ------------VDESTVPDRLGSSRWSTSLRKAERQIEEEAKELLELYAKRKIAKGHAF 470
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S A+ R +I + +AI+ ++ ++ S
Sbjct: 471 SPDG---EAMEEFERSFPHEETIDQLKAISDVKKDMESPRP 508
>gi|150007271|ref|YP_001302014.1| putative transcription-repair coupling factor [Parabacteroides
distasonis ATCC 8503]
gi|149935695|gb|ABR42392.1| putative transcription-repair coupling factor [Parabacteroides
distasonis ATCC 8503]
Length = 1120
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++IV+ HGVG + EV G E + ++ + V + +
Sbjct: 427 ELNQFSQGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIKL-IYQNNDIIFVSIHSLHKLSK 485
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E+ + KL G K+ + ++ RDL S+
Sbjct: 486 YKGKESGEPPKLSKLGTGA---------------WEKMKERTKAKVKDIARDLILLYSKR 530
Query: 130 EKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +S + + ++ + +A ++ ++ S
Sbjct: 531 KQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRP 576
>gi|330836643|ref|YP_004411284.1| transcription-repair coupling factor [Spirochaeta coccoides DSM
17374]
gi|329748546|gb|AEC01902.1| transcription-repair coupling factor [Spirochaeta coccoides DSM
17374]
Length = 1092
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 21/172 (12%)
Query: 5 QKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + + F G+++V+ +GVG +I V+G + ++ I + L VP+
Sbjct: 417 KIQSSPLDSFVDLSEGDYVVHANYGVGQFIKIDRVGVSGRERDYIKIRYA-SDENLYVPI 475
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+A I S + RA++ ++ +
Sbjct: 476 EQANLIQRYIGSAGGSP-----ALDHLGGQGWEHKKARARKSAEQLAT-----------R 519
Query: 122 LHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSK 172
L + ++ + + ++ + + I I+ ++ S
Sbjct: 520 LQQLYARRKNARGFPFPPDTDWQLQFEASFPYDETEDQLTCIEDIKKDMESP 571
>gi|218507810|ref|ZP_03505688.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
Brasil 5]
Length = 318
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 17/162 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G G +V+ HG+G +K E AG + + + L +PV +
Sbjct: 3 GLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLSRY-- 59
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G A Q AK+ L ++R ++
Sbjct: 60 -GGEGTDAQLDKLGGGA----------WQMRKAKLKKRLLDMADALIRIAAERLTRHAPV 108
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI+ + +L +
Sbjct: 109 LTSPDGL---YDEFAARFPYDETEDQDNAIDAVRSDLGAGRP 147
>gi|126701125|ref|YP_001090022.1| transcription-repair coupling factor [Clostridium difficile 630]
gi|255102711|ref|ZP_05331688.1| transcription-repair coupling factor [Clostridium difficile
QCD-63q42]
gi|255308532|ref|ZP_05352703.1| transcription-repair coupling factor [Clostridium difficile ATCC
43255]
gi|115252562|emb|CAJ70405.1| Transcription-repair coupling factor (TRCF ATP-dependent helicase
mfd) [Clostridium difficile]
Length = 1128
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ GVG T I++ V +K ++ I + L VP+ + +
Sbjct: 491 DLSVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKI-VYQGGDNLYVPIDQMDKVQKYIG 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E V+ ++ K + I ++ +DL ++ EK
Sbjct: 550 AEVEKVKL----------------NKLGTNEWTKAKAKVKKEIEDMTKDLIELYAKREKI 593
Query: 133 YSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + +AI + ++ S
Sbjct: 594 QGYKFSKDTPWQAEFESLFPYQETEDQLKAIEETKKDMESSK 635
>gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 1171
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 17/176 (9%), Positives = 57/176 (32%), Gaps = 22/176 (12%)
Query: 4 QQKRDAMRQ-----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ ++ G++IV+ HG+G +I++ + G ++ VI + +
Sbjct: 477 RKRKRSVNSNINVNKINPGDYIVHKNHGIGQFLKIEKINITGESRDYLVIRYL--DGKIS 534
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + I + S + + K ++
Sbjct: 535 VAADQLGSINRYRSSGK------------IKPRINKLGGTEWLKIKDKNRKIIKKVALDI 582
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + E ++ + + + A+ +++++ S
Sbjct: 583 LKLYAKREKLKGHIFPEDGPWQ---KELEESFPYQATPDQITAVKEVKIDMESDKP 635
>gi|291541698|emb|CBL14808.1| transcription-repair coupling factor [Ruminococcus bromii L2-63]
Length = 1152
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 17/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++V+ HG+G I++ + G+ ++ I + K + L VPV + +
Sbjct: 491 SELAPGDYVVHNVHGIGVFGGIRKIDTHGVIKDYIKIDYAKGDV-LYVPVTQLDMVAKYI 549
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + +L G K + ++ ++ ++L SQ K
Sbjct: 550 GPKEDSRVKLNRLGSGD---------------WQKAKARVKTSVKDIAKELIELYSQRMK 594
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ R + + I+ ++ S
Sbjct: 595 AKGYAFSADNEWQRDFELSFEYDETPDQLRCCEEIKHDMMRSSP 638
>gi|291522023|emb|CBK80316.1| transcription-repair coupling factor [Coprococcus catus GD/7]
Length = 1178
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ +R + G+++V+ HGVG I+ EV G+ ++ I L +
Sbjct: 493 ASEGERIRSFKELSVGDYVVHEGHGVGIYRGIENVEVDGVAKDYIKIE-YGGGGSLYILA 551
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
I ++ + + + G K+ ++V+
Sbjct: 552 TNLDMIQKY--ADKDTKQVKVNKMSGPE----------WTRTKTKVKGAVRELAMDLVKL 599
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+++ M + + +AI + ++ S
Sbjct: 600 YAARQESEGYVCGPDTVWQREFEEM---FPYEETQDQLDAIEATKRDMESTK 648
>gi|84623030|ref|YP_450402.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84366970|dbj|BAE68128.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 1154
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETADQLAAIDATLRDLGSSQP 629
>gi|188575614|ref|YP_001912543.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188520066|gb|ACD58011.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 1154
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETADQLAAIDATLRDLGSSQP 629
>gi|58581095|ref|YP_200111.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425689|gb|AAW74726.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 1154
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETADQLAAIDATLRDLGSSQP 629
>gi|226355564|ref|YP_002785304.1| transcription-repair coupling factor [Deinococcus deserti VCD115]
gi|226317554|gb|ACO45550.1| putative transcription-repair coupling factor [Deinococcus deserti
VCD115]
Length = 1041
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 58/169 (34%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ G G+ +++P HG+G ++ ++V G+ ++ + L VP+ +
Sbjct: 359 RPVTDALGLHVGDFLIHPEHGIGRFEGLETRKVLGVTRDYL-NIEYRGGARLSVPIEQLP 417
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + ++ + RA++ ++ L + R +
Sbjct: 418 VLRRHPGTTDDPP-----VLSSFDKKDWAKAKERARKNAEEVAGKLL--VQYAARQVTPG 470
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ P + + Q+ ++ + + ++ +L +
Sbjct: 471 NAFPPQPEWDEQIEQN--------FKFELTSDQKISLKETMRDLEKPNP 511
>gi|291286200|ref|YP_003503016.1| transcription-repair coupling factor [Denitrovibrio acetiphilus DSM
12809]
gi|290883360|gb|ADD67060.1| transcription-repair coupling factor [Denitrovibrio acetiphilus DSM
12809]
Length = 1103
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 64/176 (36%), Gaps = 19/176 (10%)
Query: 2 TFQQKRD---AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+ K++ G+H+V+ +G+G + Q + G++ +F + + L
Sbjct: 426 PKRGKKELYSTTISDLEPGDHVVHVDYGIGIYLGLVHQSIGGVEGDFIQLE-YDNSEFLY 484
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VP+ I SE G ++ +++ ++ A+ + ++
Sbjct: 485 VPLSSIGQIQKYIGSE------------GSRPRVSSLQTQQWKKVKAQAKARAKKIAMDL 532
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + S+++ L+ + + + AI+ + ++ S
Sbjct: 533 LKLYAQRKVEKGFSFTDDGNM---LDNFEQSFEYDETDDQLSAIHDVYNDMESAMP 585
>gi|327403557|ref|YP_004344395.1| transcription-repair coupling factor [Fluviicola taffensis DSM
16823]
gi|327319065|gb|AEA43557.1| transcription-repair coupling factor [Fluviicola taffensis DSM
16823]
Length = 1113
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 61/175 (34%), Gaps = 19/175 (10%)
Query: 3 FQQKRDAMRQG---FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
Q K+ + + G+++ + HGVG + ++ +V+G + E + +D L V
Sbjct: 419 RQAKQALTLKEIYNLQKGDYVTHIDHGVGQFSGLQTIDVSGKQQEAIRL-VYRDGDVLYV 477
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ I G A + ++ K +++
Sbjct: 478 SIHSLHRISK------------FTGKDGAAPKMNKLGTQAWATLKQKTKKRIKELAFDLI 525
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + SQP ++S + N + ++ + +A ++ ++ ++
Sbjct: 526 QLYAKRKSQPGFAFSPDTYLQ---NELEASFMYEDTPDQLKATQAVKEDMEKETP 577
>gi|315607772|ref|ZP_07882765.1| transcription-repair coupling factor [Prevotella buccae ATCC 33574]
gi|315250241|gb|EFU30237.1| transcription-repair coupling factor [Prevotella buccae ATCC 33574]
Length = 1155
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 50/165 (30%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G++IV+ G+G + G E I ++ + V + I
Sbjct: 465 ELQEMEPGDYIVHVDFGIGKFGGLVRVPTGGSYQEMIRI-IYQNNDKVDVSIHSLYKISK 523
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + G+ T+ + + ++++ R +
Sbjct: 524 YRRQDT-----------GEPPRLSTLGTGAWDRLKERTKKKIKDIARDLIKLYARRRREK 572
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + + ++ + +A ++ ++ S
Sbjct: 573 GFAYSADSYLQ---HELEASFLYEDTPDQNKATQDVKSDMESGRP 614
>gi|288924758|ref|ZP_06418695.1| transcription-repair coupling factor [Prevotella buccae D17]
gi|288338545|gb|EFC76894.1| transcription-repair coupling factor [Prevotella buccae D17]
Length = 1155
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 50/165 (30%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G++IV+ G+G + G E I ++ + V + I
Sbjct: 465 ELQEMEPGDYIVHVDFGIGKFGGLVRVPTGGSYQEMIRI-IYQNNDKVDVSIHSLYKISK 523
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + G+ T+ + + ++++ R +
Sbjct: 524 YRRQDT-----------GEPPRLSTLGTGAWDRLKERTKKKIKDIARDLIKLYARRRREK 572
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + + ++ + +A ++ ++ S
Sbjct: 573 GFAYSADSYLQ---HELEASFLYEDTPDQNKATQDVKSDMESGRP 614
>gi|291542940|emb|CBL16050.1| Transcriptional regulators, similar to M. xanthus CarD
[Ruminococcus bromii L2-63]
Length = 162
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 65/159 (40%), Gaps = 6/159 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK-MCLKVPVGKAIDIGMRK 71
+ GE ++Y ++GV ITEI +++ +E++V+ L VP + + +
Sbjct: 1 MYSIGEIVLYGSNGVCEITEITTKKIGKDSIEYYVLKPVCSDSSTLFVPTQNEMLVSRMR 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR-----TD 126
+ + + + + + R ++ I+ GD + + E++R +H
Sbjct: 61 AVLSSDEIKDILSQKTDNEIWIDNKAERCEKIKEIISGGDCMKLVELIRRMHFHSKLQLK 120
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165
++ + + A + E++ V I + + L+
Sbjct: 121 KGRRLHITDERFLKEAEKMVCDEVSVVLHIDRNDVLPLV 159
>gi|168487226|ref|ZP_02711734.1| transcription-repair coupling factor [Streptococcus pneumoniae
CDC1087-00]
gi|183569911|gb|EDT90439.1| transcription-repair coupling factor [Streptococcus pneumoniae
CDC1087-00]
Length = 953
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|152995735|ref|YP_001340570.1| transcription-repair coupling factor [Marinomonas sp. MWYL1]
gi|150836659|gb|ABR70635.1| transcription-repair coupling factor [Marinomonas sp. MWYL1]
Length = 1137
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R +V+ HGVG + E+ G + E + + L VPV I
Sbjct: 469 TELRLNAPVVHIDHGVGRYLGLTNLEIDGQETE-LLTLGYANDAKLYVPVSSLQLISRYT 527
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ K A + A + D A +
Sbjct: 528 GADEDTA----------PLHKLGTDKWSAAKQKAAEKARDTAAELLEIYAKREARVGHAF 577
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Q + + AI+ + ++S+K
Sbjct: 578 AKPDDQ-----YELFSAGFPFEETPDQQMAIDAVMADMSAKKP 615
>gi|160939694|ref|ZP_02087042.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC
BAA-613]
gi|158437485|gb|EDP15249.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC
BAA-613]
Length = 1200
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
Q K G+++V+ HG+G I++ E + ++ I D L +P +
Sbjct: 519 QGKAIQSFTELSVGDYVVHEEHGLGIYKGIEKVERDKVIKDYIKIE-YGDGGNLYLPATR 577
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I +EA K + + ++ ++V+
Sbjct: 578 LESIQKYAGAEA------------KKPKLNKLGGTEWNKTKTRVRGAVQEIARDLVKLYA 625
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y +++ + + + +AI+ ++ ++ S+
Sbjct: 626 ARQEKAGFQYGTDTVWQREFEEL---FPYDETDDQMDAIDAVKKDMESRR 672
>gi|123968563|ref|YP_001009421.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. AS9601]
gi|123198673|gb|ABM70314.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
str. AS9601]
Length = 1170
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 57/176 (32%), Gaps = 22/176 (12%)
Query: 4 QQKRDAMRQ-----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K+ ++ G+ IV+ HG+G +I++ + G ++ VI + +
Sbjct: 476 RRKKRSVNSNINVNKISPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQY--QDGKIS 533
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + S + + K ++
Sbjct: 534 VAADQLGSVNRYRSSGK------------IKPKINKLGGTEWERIKDKNKKQIKKVAVDI 581
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + Y E ++ + + + + A+ I+ ++ S+
Sbjct: 582 LKLYAKREKLKGYIYPEDGPWQ---DELEESFPYQPTPDQITAVEEIKSDMESEKP 634
>gi|307154808|ref|YP_003890192.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
gi|306985036|gb|ADN16917.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
Length = 1169
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 65/176 (36%), Gaps = 25/176 (14%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+++R A +Q R G+++V+ HG+G +++ E E+ +I + L+
Sbjct: 489 RKRRRAASKQVNLDKLRPGDYVVHRHHGIGKFIKLEILE----SREYVLIQYA--DGTLR 542
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+P + + + H E L + GKA ++ K+ ++
Sbjct: 543 IPSDSLDSLSRYRQTGNHPPE--LHRMAGKA----------WEQTKQKVRKSVKKLAVDL 590
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Q S+ ++ + + + +A+ ++ +L S
Sbjct: 591 INLYAKRAQQEGFSFPTDSPWQ---QELEDSFPYQPTPDQLKAVQEVKRDLESDRP 643
>gi|145589112|ref|YP_001155709.1| transcription-repair coupling factor [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047518|gb|ABP34145.1| transcription-repair coupling factor [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 1180
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 45/170 (26%), Gaps = 21/170 (12%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMK----LEFFVIAFDKDKMCLKVPVGKAI 65
+ G+ +V+ HG+G + +A K E F+ + L VPV +
Sbjct: 491 DLSELKIGDPVVHAEHGIGRYQGLVLLNLAPPKEAPIFEEFLHLQYAGQATLYVPVQQLQ 550
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ S+ L + K I + +L
Sbjct: 551 MVTRYAGSDPDSAP--LHQLGSGQ--------------WDKAKRKAAQQIRDTAAELLGL 594
Query: 126 DSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S +
Sbjct: 595 YAARAIRKGHAFEFSAHDYAAFSESFGFEETPDQANAIAAVIGDMTSGTP 644
>gi|325916554|ref|ZP_08178820.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
ATCC 35937]
gi|325537227|gb|EGD08957.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
ATCC 35937]
Length = 1155
Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 485 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 543
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 544 ASAETAP--LHSLGG--------------EQWTKAKRRAAEKVRDVAAELLEIQARRRAR 587
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 588 AGLALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQP 630
>gi|90071180|emb|CAJ65832.1| putative transcription repair-coupling factor [uncultured
Porphyromonadaceae bacterium]
Length = 1053
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 48/165 (29%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+ IV+ HGVG + V G E + + + V + +
Sbjct: 364 ELSQIEVGDFIVHVDHGVGRFGGLVRTAVNGKMQEMIKLTYLN-DDKIFVSIHSLHKLAK 422
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ E G + S + S ++++ +
Sbjct: 423 YRGKE------------GVPPKLNKLGSGAWNRVKERTKSKLKDIARDLIQLYAARRKEK 470
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + + ++ + +A ++ ++ S+
Sbjct: 471 GFAYSPDGYLQ---HELEASFIYEDTPDQLKATEAVKADMESERP 512
>gi|157964740|ref|YP_001499564.1| transcription-repair coupling factor [Rickettsia massiliae MTU5]
gi|157844516|gb|ABV85017.1| Transcription-repair coupling factor [Rickettsia massiliae MTU5]
Length = 1134
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 20/173 (11%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G F+ L +
Sbjct: 455 TNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKPQHDFLKILYAGNDKLYI 514
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A ++ W R + +I L I
Sbjct: 515 PVESIEVIKKYGNDNAEL-----------DKLGSVSWQRSKAKLKNRIKEIALHLIQIAA 563
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 564 KRKLNSSASVEFDLEE-------YDKFCANFPFSETEDQLTAINDIKEDLRNG 609
>gi|126657369|ref|ZP_01728528.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
gi|126621356|gb|EAZ92068.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
Length = 1160
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 18/173 (10%), Positives = 55/173 (31%), Gaps = 23/173 (13%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+K Q G+++V+ +HG+G +++ E+ V+ + L++P
Sbjct: 483 ATSKK--VDLQQLHPGDYVVHKSHGIGKFLKLESL----ATREYLVVQYA--DGILRIPA 534
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + + M + Q+ ++ +++
Sbjct: 535 DSFDSLSRYRHTG------------STPPQLHKMTGKMWQKSKQRVRKNIKKLAVDLINL 582
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Y ++ + + + +AI ++++L S
Sbjct: 583 YAKRAKNVGFTYPLDTPWQ---QELEDSFPYQPTPDQLKAIQDVKIDLESDRP 632
>gi|86140950|ref|ZP_01059509.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
MED217]
gi|85832892|gb|EAQ51341.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
MED217]
Length = 1127
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 18/174 (10%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + + G++I + HG+G +++ EV G + E + ++ L +
Sbjct: 422 AKKQAITLKELTSLQVGDYITHIDHGIGKFGGLQKIEVEGKRQEAIKL-IYGERDVLYLS 480
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ + GK + S ++ K + +++
Sbjct: 481 IHSLHKVTKYNG------------KDGKPPQIYKLGSAAWKKLKQKTKTKVKEIAFNLIK 528
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + N + ++ + A ++ ++ S
Sbjct: 529 LYAKRRLEKGFAFGPDTYLQ---NELEASFIYEDTPDQSSATEAVKADMESPRP 579
>gi|320102612|ref|YP_004178203.1| transcription-repair coupling factor [Isosphaera pallida ATCC
43644]
gi|319749894|gb|ADV61654.1| transcription-repair coupling factor [Isosphaera pallida ATCC
43644]
Length = 1111
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 17/176 (9%)
Query: 2 TFQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++ + F G+ +V+ HG+G +K E G ++E ++ + L
Sbjct: 429 PRRRYQGRAIDSFLDLNEGDLVVHLNHGIGVYRGLKLIEKPGDQVEEVMVIEFAEGTKLY 488
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + K + +++ + W +R + + DL A
Sbjct: 489 VSISKVDLVQKYVGGGRANPP--------LSKIGSSAWEKRKKRVADAVR--DLAAELID 538
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + L + + AI I +
Sbjct: 539 LQAQRQARPGIALPAVDSHLMRE----FAASFPYEETPDQLAAIEAIREDQIQPRP 590
>gi|85059053|ref|YP_454755.1| transcription-repair coupling factor [Sodalis glossinidius str.
'morsitans']
gi|84779573|dbj|BAE74350.1| transcription-repair coupling factor [Sodalis glossinidius str.
'morsitans']
Length = 1150
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E +K E+ ++ + + L VPV I
Sbjct: 477 ELHEGQPVVHLEHGVGRYAGMTTLEAGSIKAEYLILTYACND-KLYVPVSSLHLISRYAG 535
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G A K AE++ + ++ +
Sbjct: 536 GADE--NAPLHKLGGDA----------WTRARQKAAERVRDVAAELLDIYAQRAAKSGFA 583
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + ++ + +AIN + ++
Sbjct: 584 FRHNR---ENYQLFCEGFPFEPTVDQSQAINAVLSDMCQP 620
>gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM
13479]
gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM
13479]
Length = 1178
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 67/173 (38%), Gaps = 18/173 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ + G+++V+ HG+G I++ E G+ ++ + D L +P
Sbjct: 495 TYEGTKIQSFSDLAVGDYVVHEDHGLGIYRGIEKIEQDGVIKDYLKVE-YGDGGNLYLPA 553
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ G++K + A + L + G K + A+ E+ +D
Sbjct: 554 TRLD--GIQKYAGAEAKKPKLNRLGGDQ--------------WNKTKTRVKGAVREIAKD 597
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKS 173
L + + + + + ++ + E + + +AI+ + ++ S+
Sbjct: 598 LVQLYAARQDTQGFQYGPDTVWQKEFEEMFPYEETEDQLDAIDSTKSDMESRK 650
>gi|187931883|ref|YP_001891868.1| transcription-repair coupling factor [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712792|gb|ACD31089.1| transcription-repair coupling factor [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 1141
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYGGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + + + ++ K + A ++ + + +
Sbjct: 529 YNSSLTEK------------IALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 576
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 577 GFSNS---LDEEEYLRFCADFPYEETPDQLSAINDVFKDMISAKP 618
>gi|229586940|ref|YP_002845441.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
gi|228021990|gb|ACP53698.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
Length = 1122
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I + + L +
Sbjct: 444 THKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGND-KLYI 502
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A ++ W R + +I L I
Sbjct: 503 PVESIEVIKKYGNDNAEL-----------DKLGSVSWQRSKAKLKKRIKEIALHLIQIAA 551
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 552 KRKLNSSASVEFDLEE-------YDKFCANFPFSETEDQLIAINDIKEDLRNG 597
>gi|291544413|emb|CBL17522.1| Transcriptional regulators, similar to M. xanthus CarD
[Ruminococcus sp. 18P13]
Length = 173
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 7/164 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGM-KLEFFVIAFDKDK-MCLKVPVGKAIDIGMR 70
F G ++Y A G+ I +++ G+ + E++ + ++ + +R
Sbjct: 2 EFEIGSWVMYSATGICRILSREKKCFDGVHETEYYKLEPLREGTHSVYYIPVLTAASKLR 61
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD---- 126
L +A V ++ ++ + R + + + D + +V+ LH
Sbjct: 62 PLMDAPQVHELIQHIQDLPCRWCADRNARKELFHHILRQDDPKQLLAMVKSLHTQQEAQS 121
Query: 127 -SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + S S+ SA + E A + E L++ L
Sbjct: 122 RAGKKLSSSDEAALHSAEQILNEEFALALHMQPGEIPLLVQQAL 165
>gi|167627778|ref|YP_001678278.1| transcription-repair coupling factor [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|167597779|gb|ABZ87777.1| transcription-repair coupling factor [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 1139
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 469 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 527
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + S + ++ K + A ++ + + +
Sbjct: 528 YNSSITEK------------IALNKLGSDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 575
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 576 GFSNS---LDEEEYLRFCADFPYEETPDQLLAINDVFKDMISAKP 617
>gi|91793030|ref|YP_562681.1| transcription-repair coupling factor [Shewanella denitrificans
OS217]
gi|91715032|gb|ABE54958.1| transcription-repair coupling factor [Shewanella denitrificans
OS217]
Length = 1179
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 29/184 (15%)
Query: 1 MTFQQKRDAMRQ-----------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49
+ Q++RD +Q + G+ IV+ HGV ++ + G+ E+ +
Sbjct: 482 IAQQRRRDKQKQVSSDALIKDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYLKLE 541
Query: 50 FDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS 109
+ L VPV I + + ++ E AK
Sbjct: 542 YAGGD-KLYVPVSSLHLISRYNANSEDNAQL----------------NKLGNETWAKAKK 584
Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVN 168
+ I +V +L ++ + E ++ + + ++ + AI + +
Sbjct: 585 KAIEKIRDVAAELLDVYARRQSRPGEALAIDADEYAQFAQGFPYEETVDQESAIIAVLND 644
Query: 169 LSSK 172
+ +
Sbjct: 645 MQAP 648
>gi|302669664|ref|YP_003829624.1| transcription-repair coupling factor Mfd [Butyrivibrio
proteoclasticus B316]
gi|302394137|gb|ADL33042.1| transcription-repair coupling factor Mfd [Butyrivibrio
proteoclasticus B316]
Length = 1191
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 49/166 (29%), Gaps = 11/166 (6%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + + G+++V+ HG+G I++ E + ++ I D L V
Sbjct: 500 KISSFSDLKIGDYVVHEDHGLGIYRGIEKIETDHVVRDYIKIE-YGDGGNLYVLATGLGV 558
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + + S +K+ + ++V +
Sbjct: 559 IQKYASGGDDSETTHKPKLNK-------LGSVEWSHTKSKVKAAVEEVAQDLVELYAKRQ 611
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+S +++ + + AI + ++ S
Sbjct: 612 EAKGHQFSPDTVWQ---QEFEDAFPYQETDDQLTAIEDTKRDMESG 654
>gi|170744353|ref|YP_001773008.1| transcription-repair coupling factor [Methylobacterium sp. 4-46]
gi|168198627|gb|ACA20574.1| transcription-repair coupling factor [Methylobacterium sp. 4-46]
Length = 1203
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 18/165 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ +V+ HG+G T +K AG + I + + L +PV +
Sbjct: 528 EVQALSPGDLVVHADHGIGRFTGLKTVTAAGAPHDCLEIQY--NGGLLLLPVENIELLTR 585
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + L + G A Q AK+ L +++ +P
Sbjct: 586 Y---GSEEADVPLDKLGGGA----------WQARKAKLKRRILEMAGALIKVAAERFLRP 632
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI +L++
Sbjct: 633 APKLV---PPDGTYGEFAARFPYEETEDQEAAIAATLGDLTAGRP 674
>gi|332184209|gb|AEE26463.1| Transcription-repair coupling factor [Francisella cf. novicida
3523]
Length = 1142
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 470 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 528
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + + + ++ K + A ++ + + +
Sbjct: 529 YNSSLTEK------------IALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 576
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 577 GFSNS---LDEEEYLRFCADFPYEETPDQLLAINDVFKDMISTKP 618
>gi|255536470|ref|YP_003096841.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
3519-10]
gi|255342666|gb|ACU08779.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
3519-10]
Length = 1138
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 52/158 (32%), Gaps = 16/158 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
+ G++I + HG+G + + G E F + K+ L V + I
Sbjct: 454 KVGDYITHIDHGIGKFMGLVKVNNNGKVQECFKL-TYKNGDLLYVSIHSLHKISKYNG-- 510
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
G+ V + S + K + +++R + + +++
Sbjct: 511 ----------PDGREIVLSKLGSPAWKTLKQKTKAKVKQIAFDLIRLYAKRKTAKGFAFT 560
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ N + ++ + +A ++ ++ +
Sbjct: 561 PDSYLQ---NELEASFIYEDTPDQEKATLDVKTDMEKE 595
>gi|168493994|ref|ZP_02718137.1| transcription-repair coupling factor [Streptococcus pneumoniae
CDC3059-06]
gi|183575852|gb|EDT96380.1| transcription-repair coupling factor [Streptococcus pneumoniae
CDC3059-06]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|221230954|ref|YP_002510106.1| transcription-repair coupling factor [Streptococcus pneumoniae ATCC
700669]
gi|225853617|ref|YP_002735129.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
gi|220673414|emb|CAR67872.1| putative putative transcription-repair coupling factor
[Streptococcus pneumoniae ATCC 700669]
gi|225722629|gb|ACO18482.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|332199073|gb|EGJ13154.1| transcription-repair coupling factor [Streptococcus pneumoniae
GA47901]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|225855741|ref|YP_002737252.1| transcription-repair coupling factor [Streptococcus pneumoniae
P1031]
gi|225724744|gb|ACO20596.1| transcription-repair coupling factor [Streptococcus pneumoniae
P1031]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|220904183|ref|YP_002479495.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219868482|gb|ACL48817.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 1179
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ +G+G + ++ +F ++ + L VP + I ++
Sbjct: 502 DDLKPGDLLVHRDYGIGRFAGLHHLDLNAAANDFLLVEYSGRD-KLYVPADRLGLI--QR 558
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
VE AL + G A V K A++V
Sbjct: 559 FKGTEGVEPALDRLGGAAWVAG----------KEKARKAIEKIAADLVEMYAYRKVTKGF 608
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + + + +AI + ++
Sbjct: 609 RY---DPPGELYHEFEATFGFEETPDQAKAIQDVLDDMDRPRP 648
>gi|168484302|ref|ZP_02709254.1| transcription-repair coupling factor [Streptococcus pneumoniae
CDC1873-00]
gi|172042444|gb|EDT50490.1| transcription-repair coupling factor [Streptococcus pneumoniae
CDC1873-00]
gi|332198870|gb|EGJ12952.1| transcription-repair coupling factor [Streptococcus pneumoniae
GA47368]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|149020164|ref|ZP_01835138.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP23-BS72]
gi|147930842|gb|EDK81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP23-BS72]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|148988910|ref|ZP_01820325.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP6-BS73]
gi|147925721|gb|EDK76797.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP6-BS73]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|149013378|ref|ZP_01834087.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP19-BS75]
gi|182682976|ref|YP_001834723.1| transcription-repair coupling factor [Streptococcus pneumoniae
CGSP14]
gi|303254907|ref|ZP_07340992.1| transcription-repair coupling factor [Streptococcus pneumoniae
BS455]
gi|303259732|ref|ZP_07345708.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP-BS293]
gi|303262199|ref|ZP_07348144.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP14-BS292]
gi|303265395|ref|ZP_07351302.1| transcription-repair coupling factor [Streptococcus pneumoniae
BS397]
gi|303266057|ref|ZP_07351951.1| transcription-repair coupling factor [Streptococcus pneumoniae
BS457]
gi|303268465|ref|ZP_07354259.1| transcription-repair coupling factor [Streptococcus pneumoniae
BS458]
gi|147762901|gb|EDK69849.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP19-BS75]
gi|182628310|gb|ACB89258.1| transcription-repair coupling factor [Streptococcus pneumoniae
CGSP14]
gi|301800979|emb|CBW33640.1| putative putative transcription-repair coupling factor
[Streptococcus pneumoniae INV200]
gi|302598178|gb|EFL65239.1| transcription-repair coupling factor [Streptococcus pneumoniae
BS455]
gi|302636839|gb|EFL67329.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP14-BS292]
gi|302639284|gb|EFL69743.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP-BS293]
gi|302641966|gb|EFL72319.1| transcription-repair coupling factor [Streptococcus pneumoniae
BS458]
gi|302644361|gb|EFL74614.1| transcription-repair coupling factor [Streptococcus pneumoniae
BS457]
gi|302645072|gb|EFL75312.1| transcription-repair coupling factor [Streptococcus pneumoniae
BS397]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|15899955|ref|NP_344559.1| transcription-repair coupling factor [Streptococcus pneumoniae
TIGR4]
gi|111658624|ref|ZP_01409274.1| hypothetical protein SpneT_02000214 [Streptococcus pneumoniae
TIGR4]
gi|14971470|gb|AAK74199.1| transcription-repair coupling factor [Streptococcus pneumoniae
TIGR4]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|149003146|ref|ZP_01828055.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP14-BS69]
gi|237651085|ref|ZP_04525337.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
1974]
gi|237821198|ref|ZP_04597043.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
1974M2]
gi|147758887|gb|EDK65883.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP14-BS69]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|294664095|ref|ZP_06729492.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292606135|gb|EFF49389.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 1154
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQP 629
>gi|294625045|ref|ZP_06703694.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292600675|gb|EFF44763.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 1154
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQP 629
>gi|194397105|ref|YP_002036727.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
gi|194356772|gb|ACF55220.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|323492540|ref|ZP_08097688.1| transcription-repair coupling factor [Vibrio brasiliensis LMG
20546]
gi|323313327|gb|EGA66443.1| transcription-repair coupling factor [Vibrio brasiliensis LMG
20546]
Length = 1153
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+TG+ +V+ HG+G ++ E GM E +V +++ L VPV I
Sbjct: 479 ELQTGQPVVHIDHGIGRYIGLQTLEAGGMTTE-YVTLEYQNEAKLYVPVASLNLISRYSG 537
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
L + G+A K + + +V +L ++ E
Sbjct: 538 GAEESAP--LHKLGGEAWAKARRKAA--------------EKVRDVAAELLDVYAKRELK 581
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AIN + ++ +
Sbjct: 582 PGFKFELDRGQYATFKAGFPFEETDDQSMAINAVMSDMCQAKA 624
>gi|225857815|ref|YP_002739325.1| transcription-repair coupling factor [Streptococcus pneumoniae
70585]
gi|225720446|gb|ACO16300.1| transcription-repair coupling factor [Streptococcus pneumoniae
70585]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|148984550|ref|ZP_01817838.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP3-BS71]
gi|147923327|gb|EDK74441.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP3-BS71]
gi|301799155|emb|CBW31667.1| putative putative transcription-repair coupling factor
[Streptococcus pneumoniae OXC141]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|21243585|ref|NP_643167.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
citri str. 306]
gi|21109155|gb|AAM37703.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
citri str. 306]
Length = 1154
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTKAKRKAAEKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQP 629
>gi|313680042|ref|YP_004057781.1| transcription factor card [Oceanithermus profundus DSM 14977]
gi|313152757|gb|ADR36608.1| transcription factor CarD [Oceanithermus profundus DSM 14977]
Length = 986
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 54/159 (33%), Gaps = 18/159 (11%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+++V+P HG+G ++ +EV G ++ V+ + + L VPV + + +
Sbjct: 332 GDYLVHPEHGIGRFEGLESREVLGAVRDYLVLRYAGEG-QLYVPVEQLPLLRRHPGTSDE 390
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
L + K + + + + L ++ +++
Sbjct: 391 PPR--LSSLGKKD--------------WQRAKARAQADAEALAQRLLVLYARRQQTPGTA 434
Query: 137 QLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + A+ + +L +
Sbjct: 435 YPALPDWDPLIEAGFPHTLTEDQARALEDVLRDLETPHP 473
>gi|301793331|emb|CBW35690.1| putative putative transcription-repair coupling factor
[Streptococcus pneumoniae INV104]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|149007710|ref|ZP_01831319.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP18-BS74]
gi|307126180|ref|YP_003878211.1| transcription-repair coupling factor [Streptococcus pneumoniae
670-6B]
gi|147760705|gb|EDK67677.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP18-BS74]
gi|306483242|gb|ADM90111.1| transcription-repair coupling factor [Streptococcus pneumoniae
670-6B]
Length = 1169
Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|229496199|ref|ZP_04389919.1| transcription-repair coupling factor [Porphyromonas endodontalis
ATCC 35406]
gi|229316777|gb|EEN82690.1| transcription-repair coupling factor [Porphyromonas endodontalis
ATCC 35406]
Length = 1123
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 48/165 (29%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ F G+ IV+ HG+G + Q G K + V +D + V V +
Sbjct: 438 ELKSFTPGDFIVHYDHGIGRFAGLFTQR-DGEKQQEVVKIDYRDGAYILVSVHNLRKLSK 496
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ L + G A + +++R
Sbjct: 497 YR--NRDDEPPKLSELGGGA----------WNRLKERTKKRVKDIARDLIRLYAARRESE 544
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + + + +A+ ++ ++
Sbjct: 545 GFAFSPDSYLQ---HELEASFIYEETPDQLKAMEAVKQDMEQPRP 586
>gi|300774874|ref|ZP_07084737.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
35910]
gi|300506689|gb|EFK37824.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
35910]
Length = 1122
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G++I + HG+G + + G E F + K+ L V + I
Sbjct: 431 DLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKL-TYKNGDLLYVSIHSLHKISK 489
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
G+ V + S + K + ++++ + +
Sbjct: 490 YNG------------PDGREVVLSKLGSPTWKSLKQKTKAKVKQIAFDLIKLYAQRKTAK 537
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+Y+ + N + ++ + +A ++ ++ +
Sbjct: 538 GFAYTPDSYLQ---NELEASFIYEDTPDQEKATIDVKRDMEA 576
>gi|294505877|ref|YP_003569935.1| transcription-repair coupling factor [Salinibacter ruber M8]
gi|294342205|emb|CBH22983.1| Transcription-repair coupling factor [Salinibacter ruber M8]
Length = 1298
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 18/159 (11%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ +V+ HG+G +K+ V + E + F + + + V + K +
Sbjct: 612 GDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDV---LYVNVHALHKLNKYTGKE 668
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
+ L + E K + EV RDL + ++ + S
Sbjct: 669 GHQPTLTKLGS--------------EQWEKKKQRTKDQVKEVARDLIKLYAKRKASDGYA 714
Query: 137 QLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ R M ++ + EA ++ ++
Sbjct: 715 FSSDTTWQREMEASFEFEDTPDQAEATKAVKRDMEEPVP 753
>gi|166711350|ref|ZP_02242557.1| transcription-repair coupling factor [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 1154
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E K + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTKAKRKAADKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETADQLAAIDATLRDLGSSQP 629
>gi|291569965|dbj|BAI92237.1| transcriptional-repair coupling factor [Arthrospira platensis
NIES-39]
Length = 1167
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 62/175 (35%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + + G+++V+ HG+G +++ ++ ++ V+ + L+V
Sbjct: 482 KRRRAASKQVDPNRLQPGDYVVHRQHGIGKFVKLESLTISQEIRDYLVLQYA--DGTLRV 539
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + SE+ + L + GKA ++ K+ +++
Sbjct: 540 AADQVGTLSRLRRSESKVPQ--LNKLTGKA----------WEKNREKVRKSVKKLAVDLL 587
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + SY ++ + + + + ++ ++ S
Sbjct: 588 KLYAERSQKTGFSYPHDTPWQQEME---DSFPYKPTPDQLKCSQDVKRDMESDRP 639
>gi|167753145|ref|ZP_02425272.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216]
gi|167659459|gb|EDS03589.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216]
Length = 1110
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A R G+++V+ HGVG + + G E + KD L V V I
Sbjct: 425 AELNQLRMGDYVVHIDHGVGRFGGLVKINENGKVHEAIKL-IYKDNDVLFVHVHALHRIS 483
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
K E G+A + S Q+ E++ + +
Sbjct: 484 RYKSGE------------GEAPKIYKLGSGAWQKLKTATKKAVKDISRELIALYAKRKAS 531
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + ++ + A ++ ++ S
Sbjct: 532 KGFAFSPDTYLQ---QELEASFMWEDTPDQQTATQAVKRDMESNQP 574
>gi|291561352|emb|CBL40151.1| transcription-repair coupling factor [butyrate-producing bacterium
SS3/4]
Length = 1201
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 53/168 (31%), Gaps = 16/168 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K+ + G+++V+ +HG+G I++ E + ++ + D L +P +
Sbjct: 519 KKISSFSELSVGDYVVHESHGLGIYKGIEKIEQDHVIKDYIKVE-YGDGGNLYLPATRLE 577
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I + K + + K+ + E+V
Sbjct: 578 GIQKYAGA------------DAKVPKLNKLGGTEWTKTKTKVRTAVREIAKELVELYAAR 625
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y +++ M + + AI+ + ++ SK
Sbjct: 626 QDAEGFQYGPDTVWQKEFEEM---FPYDETDDQLTAIDDTKRDMESKK 670
>gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9303]
gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9303]
Length = 1193
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 16/158 (10%), Positives = 52/158 (32%), Gaps = 17/158 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ +V+ HG+G ++++ ++G ++ VI + L V + +G + +
Sbjct: 503 GDFVVHRNHGIGRFLKLEKLAISGEVRDYLVIQYL--DGTLSVAADQLGSLGRYRSTS-- 558
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
M Q+ + ++V+ P ++
Sbjct: 559 ----------ESPPKLNRMGGTAWQKIKERTRKLVRKVAMDLVKLYAERLQAPGYAFPPD 608
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + +A+ ++ ++ +
Sbjct: 609 GPWQI---ELEESFPYEPTPDQVKAVVDVKRDMEAAQP 643
>gi|15806542|ref|NP_295255.1| transcription-repair coupling factor [Deinococcus radiodurans R1]
gi|6459293|gb|AAF11095.1|AE001997_1 transcription-repair coupling factor [Deinococcus radiodurans R1]
Length = 1054
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 17/169 (10%), Positives = 58/169 (34%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ G G+ +++P HG+G ++ ++V G+ ++ + L VP+ +
Sbjct: 367 RPVTDALGLSVGDFLIHPEHGIGQFLGLETRKVLGVTRDYL-NIGYRGGSRLSVPIEQLP 425
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + + + + +A++ ++ + L + R +
Sbjct: 426 ILRRHPGTTDDPPQ-----LSSFDKKDWARAKEKARKNAEEVAAKLL--VQYAARQVTPG 478
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + Q+ ++ + + A+ +L +
Sbjct: 479 NAFDPQPEWDEQVEKN--------FEFELTKDQVTALKETMRDLEKPTP 519
>gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9313]
gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9313]
Length = 1193
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 16/158 (10%), Positives = 52/158 (32%), Gaps = 17/158 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ +V+ HG+G ++++ ++G ++ VI + L V + +G + +
Sbjct: 503 GDFVVHRNHGIGRFLKLEKLAISGEVRDYLVIEYL--DGTLSVAADQLGSLGRYRSTS-- 558
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
M Q+ + ++V+ P ++
Sbjct: 559 ----------ESPPKLNRMGGTTWQKVKERTRKLVRKVAMDLVKLYAERLQAPGYAFPPD 608
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + +A+ ++ ++ +
Sbjct: 609 GPWQI---ELEESFPYEPTPDQVKAVVDVKRDMEAAQP 643
>gi|254491679|ref|ZP_05104858.1| transcription-repair coupling factor [Methylophaga thiooxidans
DMS010]
gi|224463157|gb|EEF79427.1| transcription-repair coupling factor [Methylophaga thiooxydans
DMS010]
Length = 1101
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG ++ ++ + E +V L VPV I
Sbjct: 432 ELSVGDAVVHEDHGVGRYLGLQTLDIGDVTAE-YVTLEYAKGDKLYVPVASLDLISRYAG 490
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + + +RA E + D+ A + + + +
Sbjct: 491 AAPELAP-----LHKLGTSQWDKARKRAAE-----KARDVAAELLDIYARRAANKKTPMA 540
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + + +AI+ + ++ S+
Sbjct: 541 TPGEDYAAFAAAF-----PFEPTPDQQDAIDAVTKDMLSEHP 577
>gi|167011026|ref|ZP_02275957.1| transcription-repair coupling factor [Francisella tularensis subsp.
holarctica FSC200]
Length = 847
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 176 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 234
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S A K + Q+ D+ A +
Sbjct: 235 YNSSLTE----------KIALNKLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGF 284
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S +E + R + + + AIN + ++ S
Sbjct: 285 SNSLNEEEYL-----RFCADFPYEETPDQLSAINDVFKDMISAKP 324
>gi|78779345|ref|YP_397457.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9312]
gi|78712844|gb|ABB50021.1| transcription-repair coupling factor [Prochlorococcus marinus str.
MIT 9312]
Length = 1174
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 56/176 (31%), Gaps = 22/176 (12%)
Query: 4 QQKRDAMRQ-----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K+ ++ G+ IV+ HG+G +I++ + G ++ VI + +
Sbjct: 476 RRKKRSVNSNINVNKISPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQY--QDGKIS 533
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + S + + K ++
Sbjct: 534 VAADQLGSVNRYRSSGK------------IKPKINKLGGTEWERIKDKNKKQIKKVAVDI 581
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + Y E ++ + + + + A+ I+ ++ S
Sbjct: 582 LKLYAKREKLKGHIYPEDGPWQ---DELEESFPYQPTPDQITAVKEIKSDMESDKP 634
>gi|289523176|ref|ZP_06440030.1| transcription-repair coupling factor [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503719|gb|EFD24883.1| transcription-repair coupling factor [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 1049
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 51/162 (31%), Gaps = 18/162 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+++V+ +G+ + + + E+ ++ DK L VPV + I +
Sbjct: 388 LEVGQYVVHEDYGIAIFKGVTSTDTGEGEREYLILE-YGDKKRLLVPVYQLYKIAPYEGI 446
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
G + + ++ + +V DL + E
Sbjct: 447 Y------------GVEPQLDRLDRKSWKKNLQRAK----EKAQKVAADLVSLYALRELKK 490
Query: 134 SERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++R + + + +AI I+ ++
Sbjct: 491 GFPFPKDGDMSRHFEKTFPYKETSDQLKAIEEIKRDMEKPVP 532
>gi|225860052|ref|YP_002741561.1| transcription-repair coupling factor [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229483|ref|ZP_06963164.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298255135|ref|ZP_06978721.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298501796|ref|YP_003723736.1| transcription-repair coupling factor [Streptococcus pneumoniae
TCH8431/19A]
gi|225727732|gb|ACO23583.1| transcription-repair coupling factor [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237391|gb|ADI68522.1| transcription-repair coupling factor [Streptococcus pneumoniae
TCH8431/19A]
gi|327388991|gb|EGE87339.1| transcription-repair coupling factor [Streptococcus pneumoniae
GA04375]
Length = 1169
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|218261990|ref|ZP_03476631.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii
DSM 18315]
gi|218223648|gb|EEC96298.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii
DSM 18315]
Length = 1126
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F TG++IV+ HGVG + EV G E + ++ + V + +
Sbjct: 434 ELNQFTTGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIRL-IYQNNDIIFVSIHSLHKLSK 492
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K ++ + KL G ++ + S +++ + +
Sbjct: 493 YKGKDSGEPPKLSKLGTGA-----------WEKMKERTKSKVKDIARDLILLYSKRKQEK 541
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + + ++ + +A ++ ++ +
Sbjct: 542 GFAYSPDSFMQ---HELEASFIYEDTPDQMKATADVKTDMENDRP 583
>gi|154492199|ref|ZP_02031825.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC
43184]
gi|154087424|gb|EDN86469.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC
43184]
Length = 1167
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F TG++IV+ HGVG + EV G E + ++ + V + +
Sbjct: 475 ELNQFTTGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIRL-IYQNNDIIFVSIHSLHKLSK 533
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K ++ + KL G ++ + S +++ + +
Sbjct: 534 YKGKDSGEPPKLSKLGTGA-----------WEKMKERTKSKVKDIARDLILLYSKRKQEK 582
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS + + + ++ + +A ++ ++ +
Sbjct: 583 GFAYSPDSFMQ---HELEASFIYEDTPDQMKATADVKADMENDRP 624
>gi|148993579|ref|ZP_01823050.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP9-BS68]
gi|168489341|ref|ZP_02713540.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP195]
gi|147927800|gb|EDK78822.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP9-BS68]
gi|183572243|gb|EDT92771.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP195]
gi|332071709|gb|EGI82202.1| transcription-repair coupling factor [Streptococcus pneumoniae
GA17570]
Length = 1174
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|332077813|gb|EGI88272.1| transcription-repair coupling factor [Streptococcus pneumoniae
GA41301]
Length = 1171
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|241668341|ref|ZP_04755919.1| transcription-repair coupling factor [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254876874|ref|ZP_05249584.1| transcription-repair coupling factor [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254842895|gb|EET21309.1| transcription-repair coupling factor [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 1139
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G H+V+ HG+G ++ E+ G K EF ++ + + VP+ I +
Sbjct: 469 DLTDLKPGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYAN-DAKIYVPITSLNLISI 527
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S + S + ++ K + A ++ + + +
Sbjct: 528 YNSSITEK------------IALNKLGSDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQ 575
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S S L E R + + + AIN + ++ S
Sbjct: 576 GFSNS---LDEEEYLRFCADFPYEETPDQILAINDVFKDMISAKP 617
>gi|89094300|ref|ZP_01167241.1| transcription-repair coupling protein Mfd [Oceanospirillum sp.
MED92]
gi|89081359|gb|EAR60590.1| transcription-repair coupling protein Mfd [Oceanospirillum sp.
MED92]
Length = 1150
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 45/163 (27%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
TG +V+ HGVG ++ E+ + EF + L VPV I
Sbjct: 478 SELNTGSPVVHLDHGVGRYLGLQTIELDNQQNEFL-TLEYAEGAKLYVPVSSLHLISRYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + A + D A + +
Sbjct: 537 GAGDEHA----------PLHRLGTEQWTKAKRKAAEKARDAAAELLDIYARRAAREGFQF 586
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S + Q + + + AI + ++++K
Sbjct: 587 SSPDEQYLQ-----FASTFPFEETPDQAAAIGNVIRDMTAKQP 624
>gi|51244134|ref|YP_064018.1| transcription-repair coupling factor [Desulfotalea psychrophila
LSv54]
gi|50875171|emb|CAG35011.1| related to transcription-repair coupling factor [Desulfotalea
psychrophila LSv54]
Length = 1184
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 18/167 (10%), Positives = 51/167 (30%), Gaps = 16/167 (9%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
G+ +V+ HG+G + + + +F +D L VPV + +
Sbjct: 496 PIEFTELNEGDIVVHRDHGLGIYRGLNAIRIQEITNDFM-SIEYRDDDKLYVPVDRLNLV 554
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
+ + + S+ + K+ E++ + +
Sbjct: 555 SRYQGIS------------DREPRIDKLGSQNWRNTTKKVKEEVWKVAHELLEIYAKREL 602
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++++ + + + AIN + +L+ +
Sbjct: 603 KAGRAFAPPGQL---YQELEESFPFDETAGQLAAINSVLDDLTDANP 646
>gi|284054183|ref|ZP_06384393.1| transcription-repair coupling factor [Arthrospira platensis str.
Paraca]
Length = 1152
Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 62/175 (35%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + + G+++V+ HG+G +++ ++ ++ V+ + L+V
Sbjct: 467 KRRRAASKQVDPNRLQPGDYVVHRQHGIGKFVKLESLTISQEIRDYLVLQYA--DGTLRV 524
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + SE+ + L + GKA ++ K+ +++
Sbjct: 525 AADQVGTLSRLRRSESKVPQ--LNKLTGKA----------WEKNREKVRKSVKKLAVDLL 572
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + SY ++ + + + + ++ ++ S
Sbjct: 573 KLYAERSQKTGFSYPHDTPWQQEME---DSFPYKPTPDQLKCSQDVKRDMESDRP 624
>gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
gi|167652805|gb|EDR96934.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
Length = 1175
Score = 84.8 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 16/170 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+ ++ G+++V+ HGVG I++ V ++ + ++ K L +
Sbjct: 495 KGEKIKNFADISIGDYVVHEKHGVGIYRGIEKITVNNVEKD-YISIEYKGGDNLFILASA 553
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I + A K + ++ ++ E+V
Sbjct: 554 LDQIAKYASANA------------KKPRLNKLGGNEWKKTTKRVKGQVRETAKELVELYA 601
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ Y + +++ M + + AI ++ ++ S
Sbjct: 602 VRQAKEGYVYDKDTVWQREFEEM---FPYEETQDQLNAIEDVKRDMESTK 648
>gi|225012067|ref|ZP_03702504.1| transcription-repair coupling factor [Flavobacteria bacterium
MS024-2A]
gi|225003622|gb|EEG41595.1| transcription-repair coupling factor [Flavobacteria bacterium
MS024-2A]
Length = 1064
Score = 84.5 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 17/175 (9%), Positives = 52/175 (29%), Gaps = 19/175 (10%)
Query: 3 FQQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+K+ + G+++ + HG+GT ++ EV G E + ++ L +
Sbjct: 360 AARKQALNLKELTQMEVGDYVTHIDHGIGTFGGLQRIEVEGKWQEAIKL-IYGERDILYL 418
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ I G + S+ + K + ++
Sbjct: 419 SIHSLHKISKYNG------------KDGAVPKIYKLGSKTWKALKQKTKAKIKEIAFNLI 466
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + + ++ + + I+ ++ S+
Sbjct: 467 ELYAKRRQKIGFAFDPDSYLQW---ELEASFMYEDTPDQEKTTQAIKADMESQQP 518
>gi|312131279|ref|YP_003998619.1| transcriptioN-repair coupling factor [Leadbetterella byssophila DSM
17132]
gi|311907825|gb|ADQ18266.1| transcription-repair coupling factor [Leadbetterella byssophila DSM
17132]
Length = 1113
Score = 84.5 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ + G+ + + +G+G ++ +V G K E + +D L V + I
Sbjct: 427 ELKTLQPGDFVTHVDYGIGRFAGMETIDVGGKKQEAIRL-VYRDNDLLYVNIHSLHKISK 485
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
E G+ + S + +K+ E++ + P
Sbjct: 486 YSGKE------------GEPPTMSKLGSGEWEVRKSKVKKQVKDIAKELIALYAKRREAP 533
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + ++ + A ++ ++
Sbjct: 534 GFAFSPDNYLQI---ELESSFMYEDTPDQAAATAKVKADMEKPYP 575
>gi|325845329|ref|ZP_08168631.1| CarD-like protein [Turicibacter sp. HGF1]
gi|325488648|gb|EGC91055.1| CarD-like protein [Turicibacter sp. HGF1]
Length = 164
Score = 84.5 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 55/161 (34%), Gaps = 6/161 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE-FFVIAFDKDKMCLKVPVGKAIDIGMRK 71
FR ++I+Y GV + I+E++ + F+V+ +R
Sbjct: 1 MFRMNDYIMYGLTGVCKVIGIEEEKFLDYPQQSFYVLEPVFSPQMTIKIPVLNTIKNIRP 60
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RTD 126
+ V+ ++ + + R + + + + V++ ++
Sbjct: 61 IHSTDEVKELIQKIPDLELLWIFDERERNNLFRQMLRNANCDEWIIVIKTIYSYKYLDNY 120
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ ++ ++++ A + E V +I+ + I
Sbjct: 121 KGKRLNKNDDEIFKIAEKLLNEEFGFVLNINPDDVPTYIGE 161
>gi|297566385|ref|YP_003685357.1| transcription factor CarD [Meiothermus silvanus DSM 9946]
gi|296850834|gb|ADH63849.1| transcription factor CarD [Meiothermus silvanus DSM 9946]
Length = 988
Score = 84.5 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 60/165 (36%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G+++++P HG+G ++ +E+ G+K ++ ++ + + L +PV + +
Sbjct: 327 DPSALAPGDYLIHPEHGIGQFVGLEPREILGVKRDYLILQYAG-EARLYLPVEQLPLLKR 385
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ ++ K A ++ + + P
Sbjct: 386 HPGTTDD------------PPRLSSLGKGEWKKAREKAQKDAEELAARMLVLHAKRQATP 433
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++S + + + + +++ +L +
Sbjct: 434 GRAWAPIPEWDS---LIEKNFPYALTPDQEKSLEDTFRDLEAPRP 475
>gi|150021721|ref|YP_001307075.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
melanesiensis BI429]
gi|149794242|gb|ABR31690.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
BI429]
Length = 901
Score = 84.5 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 20/184 (10%), Positives = 60/184 (32%), Gaps = 31/184 (16%)
Query: 3 FQQKRDAMRQG-----------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFD 51
+++++ F+ G+++V+ +G+ + I + ++ EF ++ F
Sbjct: 244 TKKRKEKASDEINSIPVISQEDFQIGDYVVHKEYGIAKFSGITKITQKNLEREFLILQF- 302
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VP + + + L+ + + +
Sbjct: 303 -KDSKLFVPTDRLDLVQKYIGASETVKLDNLR-----------------KSNWIRKVNKA 344
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLS 170
I V++L R ++ + + + + + + +AI + +LS
Sbjct: 345 KKEIQNTVKELLRLNALRKMTKGLPLPGDPELEKEFANTFPHIETEDQLKAIEEVSEDLS 404
Query: 171 SKSS 174
+ +
Sbjct: 405 ADKN 408
>gi|319789291|ref|YP_004150924.1| transcription-repair coupling factor [Thermovibrio ammonificans
HB-1]
gi|317113793|gb|ADU96283.1| transcription-repair coupling factor [Thermovibrio ammonificans
HB-1]
Length = 1058
Score = 84.5 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 18/169 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G +V+ +G+G I +E+ G +F I + L P +
Sbjct: 403 KKEDVTALEPGTLVVHRDYGIGIFQGIVSREIGGKTYDFIEIEYAG-GERLYAPFTQIDR 461
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I ++ T W + A ++ + ++L +
Sbjct: 462 IYRYTGYRGKT--------PKLDKLGGTSWKNLERRVKA--------SLVKFAKELAQLY 505
Query: 127 SQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + ER + A L R + + +AI + ++ S+
Sbjct: 506 KERKSAVGERLKGDEALLREFERRFPYRLTPDQSKAIREVYRDMESERP 554
>gi|189500626|ref|YP_001960096.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
BS1]
gi|189496067|gb|ACE04615.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
BS1]
Length = 1107
Score = 84.5 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G++IV+ +G+G ++ EV + E V+ + L V V +
Sbjct: 414 DLQKLNIGDYIVHEDYGIGIFKALETIEVGDSEQES-VLVEYQGGDQLYVNVQNIRLLSK 472
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
SE + K + +R ++++R +
Sbjct: 473 YTASEGSLPALSKLGSSKWKAKKEKVKNRLKD------------IASKLIRLYAKRKMTT 520
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ +++ + + + I ++ ++ S S
Sbjct: 521 GFAFRTDSIFQ---KEFEASFIFDETPDQLKTIEQVKNDMQSGSP 562
>gi|312890454|ref|ZP_07749991.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM
18603]
gi|311297224|gb|EFQ74356.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM
18603]
Length = 1119
Score = 84.5 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ + G++I + HG+G +++ EV G E + D L V + I
Sbjct: 433 DLRELKPGDYITHIDHGIGKYAGLEKVEVNGKMQEMIRL-LYSDNDLLYVNINSLNRISK 491
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
E G + + ++ ++++ +Q
Sbjct: 492 YSGKE------------GTVPKMNKLGTDAWEKLKKTTKKKVKDIARDLIKLYAVRKAQD 539
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S ++ + ++ + +A + ++ S
Sbjct: 540 GNAFSPDSYLQT---ELEASFIYEDTPDQEKATVDFKRDMESPHP 581
>gi|32474124|ref|NP_867118.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1]
gi|32444661|emb|CAD74663.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1]
Length = 1181
Score = 84.5 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 19/172 (11%), Positives = 50/172 (29%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ K G+ +++ +HG+G + E G E I F + VP
Sbjct: 510 TRGKPIDSFTQLTPGDLVIHLSHGIGLYRGLNSIEKNGQHQEHLTIEF-DGGTKIHVPAS 568
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + + A++ W+ K + +A+ + +L
Sbjct: 569 RIQLVQRYVGGTKNR--------PKLAKIGGISWT-----NQKKAAEAAVTDMADELLEL 615
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AI +++++ +
Sbjct: 616 QAKRATRLGIPMSPD--NEWQRQFDASFPYLETPDQLSAIEALKIDMEAPRP 665
>gi|171463611|ref|YP_001797724.1| transcription-repair coupling factor [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193149|gb|ACB44110.1| transcription-repair coupling factor [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 1181
Score = 84.5 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 44/170 (25%), Gaps = 21/170 (12%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVA----GMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ G+ +V+ HG+G + +A E F+ + L VPV +
Sbjct: 491 DLSELKIGDPVVHAEHGIGRYQGLVLLNLAPPKEEPSFEEFLHLQYAGQATLYVPVQQLQ 550
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ S+ L + K I + +L
Sbjct: 551 MVTRYAGSDPDSAP--LHQLGSGQ--------------WGKAKRKAAQQIRDTAAELLGL 594
Query: 126 DSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + AI + +++S +
Sbjct: 595 YAARAIRKGHAFEFSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTP 644
>gi|91205666|ref|YP_538021.1| transcription-repair coupling factor [Rickettsia bellii RML369-C]
gi|123388111|sp|Q1RI82|MFD_RICBR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|91069210|gb|ABE04932.1| Transcription-repair coupling factor [Rickettsia bellii RML369-C]
Length = 1120
Score = 84.5 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 23/174 (13%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE IV+ HG+G +++ E+ G +F I + + L +
Sbjct: 442 TNKKLKNILLELDHLAEGELIVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGND-KLYI 500
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I S+ +++ S Q+ AK+ +
Sbjct: 501 PVENIEVIKKY-GSDVAQLDKL--------------GSVSWQKNKAKLKNRIKEIALH-- 543
Query: 120 RDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
L + ++ + + + ++ ++ + + + AIN I +LS+
Sbjct: 544 --LMQIAAKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAINDIREDLSNG 595
>gi|157825985|ref|YP_001493705.1| transcription-repair coupling factor [Rickettsia akari str.
Hartford]
gi|157799943|gb|ABV75197.1| Transcription-repair coupling factor [Rickettsia akari str.
Hartford]
Length = 1121
Score = 84.5 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 21/173 (12%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE +V+ HG+G +++ E+ G +F I + + L +
Sbjct: 443 TNKKLKNILLELDNLVEGEFVVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGND-KLYI 501
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I A ++ W R + I L I
Sbjct: 502 PVENIEVIKKYGNDNAEL-----------DKLGSVSWQRTKAKLKNHIKEIALHLIQIAA 550
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + E E ++ + + AIN I+ +L +
Sbjct: 551 KRKLNSSAAVEFDLEE-------YDKFCANFPFSETEDQLTAINDIKEDLRNG 596
>gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter
tengcongensis MB4]
gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase
[Thermoanaerobacter tengcongensis MB4]
Length = 1169
Score = 84.5 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 59/168 (35%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G ++V+ +G+G I++ +V G+ ++ I + + L VPV +
Sbjct: 494 RIKSFTELEVGSYVVHVNYGIGKYEGIEKIKVDGVIRDYLKIVYAGGDV-LFVPVEQLDL 552
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + + L + G ++ +++A E AK +++ +
Sbjct: 553 VQKYVGPTDNPPK--LNKLGGGEWIRAKRKAKKAAEDLAK----------DLIELYAKRQ 600
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S ++ + + + I I+ ++
Sbjct: 601 MAKGHAFSPDTPWQ---KEFEDQFPYEETEDQLRCIKEIKEDMEKDKP 645
>gi|157826877|ref|YP_001495941.1| transcription-repair coupling factor [Rickettsia bellii OSU 85-389]
gi|157802181|gb|ABV78904.1| Transcription-repair coupling factor [Rickettsia bellii OSU 85-389]
Length = 1120
Score = 84.5 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 23/174 (13%)
Query: 2 TFQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
T ++ ++ GE IV+ HG+G +++ E+ G +F I + + L +
Sbjct: 442 TNKKLKNILLELDHLAEGELIVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGND-KLYI 500
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV I S+ +++ S Q+ AK+ +
Sbjct: 501 PVENIEVIKKY-GSDVAQLDKL--------------GSVSWQKNKAKLKNRIKEIALH-- 543
Query: 120 RDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
L + ++ + + + ++ ++ + + + AIN I +LS+
Sbjct: 544 --LMQIAAKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAINDIREDLSNG 595
>gi|162446907|ref|YP_001620039.1| transcription-repair coupling factor [Acholeplasma laidlawii PG-8A]
gi|161985014|gb|ABX80663.1| transcription-repair coupling factor (superfamily II helicase)
[Acholeplasma laidlawii PG-8A]
Length = 1143
Score = 84.5 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 58/169 (34%), Gaps = 18/169 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ G+G +K ++G K ++ I L VP +
Sbjct: 464 KIRDISELQNGDYVVHYDFGIGQYIGLKTMTLSGDKRDYLHI-VYDKDEALYVPTDQIDL 522
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ K + + S+ + +K + I ++ L
Sbjct: 523 VLKYKSYDQ----------------VKPKLSKLNAKQWSKTKAQVKQKIKDLSDRLLNLY 566
Query: 127 SQPEKSYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + ++ +I + +AI+ + ++ S
Sbjct: 567 AKRHQAEGYQFSPRTDMLTSFEKDFNYDETIDQQKAIDAVFEDMESSKP 615
>gi|94984652|ref|YP_604016.1| transcription factor CarD [Deinococcus geothermalis DSM 11300]
gi|94554933|gb|ABF44847.1| transcription factor CarD [Deinococcus geothermalis DSM 11300]
Length = 1041
Score = 84.5 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 58/169 (34%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K G G+++++P HG+G ++ + V G+ ++ + L VP+ +
Sbjct: 358 KPVTDALGLHVGDYLIHPEHGIGQFQGLETRTVLGVTRDYL-NLEYRGGARLAVPIEQLP 416
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + ++ + +A++ ++ + L + R +
Sbjct: 417 VLRRHPGTTDDPP-----VLSSFDKKDWARAKEKARKNAEEVAARLL--VQYAARQVTPG 469
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S P + + Q + R + + A+ +L +
Sbjct: 470 NSFPPQPEWDAQ--------VERNFKFELTADQKTALKETMRDLEAPHP 510
>gi|320334953|ref|YP_004171664.1| transcription factor CarD [Deinococcus maricopensis DSM 21211]
gi|319756242|gb|ADV67999.1| transcription factor CarD [Deinococcus maricopensis DSM 21211]
Length = 1042
Score = 84.5 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 56/169 (33%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K G G+++++P HG+G ++ + V G+ ++ + + L +P+
Sbjct: 354 KPVTDALGLHVGDYLIHPEHGIGQFLGLESRTVLGVARDYLHLE-YRSGAKLYLPIELLP 412
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + + + +A++ K+ + L + R +
Sbjct: 413 VLRRHPGTTDDPPN-----LSSLDKKDWAKAREKARKNAEKVAAKLL--VQYAARQVTPG 465
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++Q+ E+ + + A+ +L +
Sbjct: 466 YAFTPMPEWDQQIEEN--------FPFELTADQVTALKETYRDLEADHP 506
>gi|327542005|gb|EGF28505.1| Transcription-repair-coupling factor [Rhodopirellula baltica WH47]
Length = 1140
Score = 84.1 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 19/172 (11%), Positives = 50/172 (29%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ K G+ +++ +HG+G + E G E I F + VP
Sbjct: 469 TRGKPIDSFTQLTPGDLVIHLSHGIGLYRGLNSIEKNGQHQEHLTIEF-DGGTKIHVPAS 527
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + + A++ W+ K + +A+ + +L
Sbjct: 528 RIQLVQRYVGGTKNR--------PKLAKIGGISWT-----NQKKAAEAAVTDMADELLEL 574
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + AI +++++ +
Sbjct: 575 QAKRATRLGIPMSPD--NEWQRQFDASFPYLETPDQLSAIEALKIDMEAPRP 624
>gi|190150660|ref|YP_001969185.1| transcription-repair coupling factor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|189915791|gb|ACE62043.1| transcription-repair coupling factor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
Length = 712
Score = 84.1 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|150024302|ref|YP_001295128.1| transcription-repair coupling factor [Flavobacterium psychrophilum
JIP02/86]
gi|149770843|emb|CAL42308.1| Transcription-repair coupling factor [Flavobacterium psychrophilum
JIP02/86]
Length = 1117
Score = 84.1 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 15/174 (8%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G E +A+ + V
Sbjct: 423 SKKQTITLKELTSLVVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLAYADND---IVY 479
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V + K + + + A + K + +++
Sbjct: 480 VSIHSLHKISKYTGKDGAPPKIYKLGSGA----------WKALKQKTKARVKHIAFNLIQ 529
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +++ + + + ++ + ++ ++ ++ S
Sbjct: 530 LYAKRRLDKGFAFAPDSYLQ---HELESSFIYEDTPDQLKSTQEVKADMESDRP 580
>gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
Length = 1147
Score = 84.1 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 16/176 (9%), Positives = 62/176 (35%), Gaps = 22/176 (12%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + R G+++V+ HG+G +++ + ++ V+ + L+V
Sbjct: 452 KRRRAASKQVDPNKLRPGDYVVHRQHGIGKFLKLESLTINNETRDYLVVQY--GDGLLRV 509
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + + A + ++ + + K + AI ++
Sbjct: 510 AADQVGTLSRFRSTGAKVPQL----------------NKLSGKSWEKTKNKVQKAIKKLA 553
Query: 120 RDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
DL + +Q + ++ + + + ++ ++ ++ ++
Sbjct: 554 VDLLKLYAQRAQQTGYNYPIDTPWQQELEDSFPYQPTPDQLKSTQDVKRDMEAERP 609
>gi|220926926|ref|YP_002502228.1| transcription-repair coupling factor [Methylobacterium nodulans ORS
2060]
gi|219951533|gb|ACL61925.1| transcription-repair coupling factor [Methylobacterium nodulans ORS
2060]
Length = 1190
Score = 84.1 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 25/179 (13%)
Query: 2 TFQQKRDA-----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
++ + Q G+ +V+ HG+G T +K AG + I +
Sbjct: 502 PTRKVKRPQDVILEVQALEAGDLVVHADHGIGRFTGLKTVTAAGAPHDCLEIQY--SGGL 559
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L +PV + + + L + G A W R + + I
Sbjct: 560 LLLPVENIELLTRY---GSEEADVPLDKLGGGA------WQARKAKLKRR--------IL 602
Query: 117 EVVRDLHRTDSQPEKSYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E+ L + ++ + R + E + + AI +L++
Sbjct: 603 EMAGALIKVAAERFLRSAPRMEPPEGTYGEFAARFPYEETEDQEAAIAATLGDLTAGRP 661
>gi|303327133|ref|ZP_07357575.1| transcription-repair coupling factor [Desulfovibrio sp. 3_1_syn3]
gi|302863121|gb|EFL86053.1| transcription-repair coupling factor [Desulfovibrio sp. 3_1_syn3]
Length = 1146
Score = 84.1 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ +G+G + ++ +F +I + L VP + I ++
Sbjct: 478 DDLKKGDLLVHRDYGIGRFAGLHHLDLNSAANDFLLIEYSGRD-KLYVPADRLGLI--QR 534
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
VE AL + G A K A++V
Sbjct: 535 FKGTEGVEPALDRLGGPA----------WAAGKEKARKAIEKIAADLVEMYAYRKVAKGF 584
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + + + +AI + ++
Sbjct: 585 RY---DPPGELYHEFEATFGFEETPDQAKAIQDVLDDMDRGEP 624
>gi|322515432|ref|ZP_08068423.1| transcription-repair coupling factor [Actinobacillus ureae ATCC
25976]
gi|322118555|gb|EFX90788.1| transcription-repair coupling factor [Actinobacillus ureae ATCC
25976]
Length = 1162
Score = 84.1 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 495 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLLYAN-EAKLYVPVASLHLISRYIG 553
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 554 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYTKRESQKGFA 601
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 602 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMRLPKA 640
>gi|269102431|ref|ZP_06155128.1| transcription-repair coupling factor [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268162329|gb|EEZ40825.1| transcription-repair coupling factor [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 1153
Score = 84.1 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ + +V+ HG+G ++ E G+ E +V ++ L VPV I
Sbjct: 483 ELQIDQPVVHIEHGIGRYKGLQTLEAGGITTE-YVTLEYQNSAKLYVPVASLHLISRYSG 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + G+A K + + +V +L ++ E
Sbjct: 542 GAEETAP--IHKLGGEAWAKARKKAA--------------EKVRDVAAELLDVYAKRELK 585
Query: 133 YSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + A + + AIN++ ++
Sbjct: 586 PGFKFKLDREAYADFCTGFPFEETHDQALAINMVLSDMCQTK 627
>gi|225378792|ref|ZP_03756013.1| hypothetical protein ROSEINA2194_04462 [Roseburia inulinivorans DSM
16841]
gi|225209384|gb|EEG91738.1| hypothetical protein ROSEINA2194_04462 [Roseburia inulinivorans DSM
16841]
Length = 187
Score = 84.1 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVP 60
+++ ++ F GE+IVY GV + EI ++ G + ++V+A +D+
Sbjct: 48 KSNRKENQKKMFEVGEYIVYGCKGVCQVEEITHIDIPGSNKDRLYYVLAPLEDRNGKIYA 107
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ MRK+ E+ ++ + + +R +Y + + D A +++
Sbjct: 108 PTDNAKVAMRKVITRQEAEQLIEEMPQIEELWVVNEKQRELQYKEALKTCDFRAWISIIK 167
Query: 121 DLHRTDSQPEKSYSERQLY 139
L+ + ++S + ++
Sbjct: 168 TLYFRKKRADRSGQKNNIF 186
>gi|67921537|ref|ZP_00515055.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
8501]
gi|67856649|gb|EAM51890.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
8501]
Length = 1160
Score = 84.1 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 58/173 (33%), Gaps = 23/173 (13%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+K Q G+++V+ +HG+G +++ E+ V+ + + L++P
Sbjct: 483 ATSKK--VDLQQLHQGDYVVHKSHGIGKFLKLESL----ATREYLVVQY--EDGILRIPA 534
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + +E K M + Q+ K+ +++
Sbjct: 535 DSFDSVSRYRHTE------------SKPPKLHKMTGKTWQKSKQKVRKNIRKLAVDLINL 582
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +Y ++ + + + +AI ++++L S
Sbjct: 583 YAKRAKNIGFTYPLDTPWQ---QELEDSFPYQPTPDQLKAIQEVKIDLESDRP 632
>gi|206889345|ref|YP_002248930.1| transcription-repair coupling factor [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741283|gb|ACI20340.1| transcription-repair coupling factor [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 1042
Score = 84.1 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 22/179 (12%)
Query: 2 TFQQKR------DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
T ++K+ G++IV+ HG+G IK Q+ G + + V+ KD
Sbjct: 358 TLKKKKLAIQKLPIDGLEINEGDYIVHKEHGIGIFRGIKRQKYEGTEEDVLVLE-YKDGD 416
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L VP I + S + + S R Q+ +
Sbjct: 417 ILYVPTWNIGKI--YRYSAKEGFIPPIDKL----------GSNRWQKAKERERKRIHDIA 464
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + ++ YSE + + + +AI+ I +
Sbjct: 465 DKLIKLYAQRKTERGFIYSEDTEIHKNFDDF---FPYEETEDQQKAIDAILKKMREPFP 520
>gi|323142960|ref|ZP_08077669.1| transcription-repair coupling factor [Succinatimonas hippei YIT
12066]
gi|322417277|gb|EFY07902.1| transcription-repair coupling factor [Succinatimonas hippei YIT
12066]
Length = 1164
Score = 84.1 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HG+G +K + +K EF + L +P+ +
Sbjct: 491 QLTEGQIVVHIDHGIGRYRGLKTLTMGDIKGEFL-TIEYQGGDILNIPITALNKVARYSG 549
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE + R WS++ Q+ K+ +A + DL+
Sbjct: 550 SENPQLSRL----------GNDTWSKKKQKAAQKVR-----DVAAELLDLYARRESRPGH 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E AL + + + AIN ++
Sbjct: 595 AFTID--ERALEQFASGFGYEETPDQLAAINATLNDMQQGKP 634
>gi|115371924|ref|ZP_01459237.1| transcription-repair coupling factor [Stigmatella aurantiaca
DW4/3-1]
gi|115371159|gb|EAU70081.1| transcription-repair coupling factor [Stigmatella aurantiaca
DW4/3-1]
Length = 769
Score = 84.1 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+ IV+ G+G + + +V G+ +F V+ + + +PVG MR
Sbjct: 98 KDLKEGDLIVHTDFGIGRYAGLTKMQVNGVPGDFLVLEYAGRD-KIYLPVG-----RMRL 151
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + + + RR +E K+ + L A +
Sbjct: 152 IQKFTGGDPSQVQLDKLGTPGWEKTKRRVKEQLLKMAAELLQLAAA-----RKAHPGHAF 206
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S +R + + + + +AI + ++ +
Sbjct: 207 SAPDRYFAQ-----FEADFEFEETPDQAKAIEDVLADMQKPTP 244
>gi|222152152|ref|YP_002561312.1| transcription-repair coupling factor [Macrococcus caseolyticus
JCSC5402]
gi|222121281|dbj|BAH18616.1| transcription-repair coupling factor [Macrococcus caseolyticus
JCSC5402]
Length = 1166
Score = 84.1 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 56/177 (31%), Gaps = 20/177 (11%)
Query: 2 TFQQKRDAMR----QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T ++ +A + Q G+++V+ HGVG ++ V + ++ I K L
Sbjct: 479 TQKKLSNAEKIKSYQELNIGDYVVHTHHGVGRYLGVETLLVNKLHKDYIKI-QYKGTDQL 537
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + + SE K + ++ A++ E
Sbjct: 538 FVPVDQMSQVQKFVGSE------------DKDPKLNKLGGTEWKKTKARVQKNVEDIAEE 585
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + + + +++ I+ ++
Sbjct: 586 LLKLYQERERIEGYQFGPDT---EEQENFEMDFPYEPTHDQKQSLIEIKGDMEKSKP 639
>gi|307250599|ref|ZP_07532540.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306857340|gb|EFM89455.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 1149
Score = 84.1 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKTEYLVLQYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|307246259|ref|ZP_07528340.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307255243|ref|ZP_07537058.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259678|ref|ZP_07541401.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306852868|gb|EFM85092.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306861792|gb|EFM93771.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866218|gb|EFM98083.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 1149
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 1143
Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 58/173 (33%), Gaps = 18/173 (10%)
Query: 4 QQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ K++ + + G ++V+ +G+G ++ V G+ E+ + + L VP
Sbjct: 470 KSKKETFYTIEDLKYGSYVVHRTYGIGKFLGFEKITVEGVTKEYLKLEYAN-NSYLYVPT 528
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
I + + + Q+ K+ + ++V
Sbjct: 529 TNLDVIEKYIGT------------DDSEPKLSKLGTLEWQKQKQKVRKSLEVVAKDIVEL 576
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +S +++ + + + +AI I+ ++ S+
Sbjct: 577 YAKRQLKKGFKFSPDTIWQ---KEFEEKFPYTETEGQLQAIEEIKKDMESEKP 626
>gi|257460753|ref|ZP_05625854.1| transcription-repair-coupling factor [Campylobacter gracilis
RM3268]
gi|257442084|gb|EEV17226.1| transcription-repair-coupling factor [Campylobacter gracilis
RM3268]
Length = 986
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 17/169 (10%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
++ G+ +V+ HG+ ++ EV G EF V + L +PV
Sbjct: 338 RRSSLALDELNVGDFVVHEDHGIAKFNGLELIEVMGHSKEF-VSLLYEGGDKLLLPVEYL 396
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I S L G+A + R + + N L A E+VR L
Sbjct: 397 NKIDRYVASGGAVSLDHL----GRASFSKIKERVREKLFAIASNIIALAAKRELVRGLVI 452
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + + + +A+ I +L S
Sbjct: 453 KNESAD------------YAKFLSASGFSYTSDQQKAVGAILADLQSGK 489
>gi|160871679|ref|ZP_02061811.1| transcription-repair coupling factor [Rickettsiella grylli]
gi|159120478|gb|EDP45816.1| transcription-repair coupling factor [Rickettsiella grylli]
Length = 1149
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G +V+ HGVG ++ ++ + EF ++ + K L VPV I
Sbjct: 483 ELTEGSPVVHTDHGVGRYRGLQHLKIDDKENEFLIVEYA-AKAKLYVPVSSLHLISRYSG 541
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+++ + S + ++ K E++ R + +
Sbjct: 542 NDSEQAP------------LHQLGSEQWEKAKRKAAEALRDVACELLDSYARRAASKGYA 589
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + E + + + +AI + +++S+ +
Sbjct: 590 F---HMPEEDYQAFAAQFPFTETQDQAQAIQQVIQDMTSERA 628
>gi|88802028|ref|ZP_01117556.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
gi|88782686|gb|EAR13863.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
Length = 1114
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 54/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDA---MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ G+++ + HG+G +++ +V G K E + ++ L V
Sbjct: 421 AKKQAITILELNKLEIGDYVTHMDHGIGKFGGLQKIDVQGNKQEAIKL-VYGERDILYVS 479
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GKA + S ++ K + +++
Sbjct: 480 IHSLHKISK------------FSGKDGKAPKIYKLGSGAWKKIKQKTKARVKHIAFNLIQ 527
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + S+ + + + ++ + A ++ ++
Sbjct: 528 LYAKRKLEKGFSFGPDSHIQ---HELEGSFIYEDTPDQFTATQDVKKDMEKAQP 578
>gi|255280659|ref|ZP_05345214.1| transcriptional regulator, CarD family [Bryantella formatexigens
DSM 14469]
gi|255268596|gb|EET61801.1| transcriptional regulator, CarD family [Bryantella formatexigens
DSM 14469]
Length = 222
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 64/182 (35%), Gaps = 9/182 (4%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEI---KEQEVAGMKLEFFVIAFDKDKMCLKV 59
++ F ++V GV + ++ ++ + K+ + +I + + +
Sbjct: 41 SERNWQQEGTMFEVNNYVVKYNSGVCKVEDVLDGQKADFKDNKMYYLLIPLAEKSARIYI 100
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P+ + + R L+ + + R EY + S D + +++
Sbjct: 101 PLERGEKVLRRVLTYEEAT-ELISRIPSIGMEFSQNDKLRELEYKEALQSLDCERMVQII 159
Query: 120 RDLHRTDSQPEKS-----YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+D++ + E ++ + + A + + E+A E + LI + +
Sbjct: 160 KDIYGRKKRREIRGKKTTATDEKYFRQAEHALYMELAFSLGCREEDIPGLITEKIKTGDK 219
Query: 175 KT 176
+
Sbjct: 220 RE 221
>gi|153811642|ref|ZP_01964310.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
gi|149832383|gb|EDM87468.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
Length = 1108
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 17/169 (10%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
KR G+++V+ HG+G I++ V + ++ I ++ L + +
Sbjct: 433 KRIQDFSELSIGDYVVHEKHGLGIYKGIEKVAVDKVAKDYIKIE-YRNGSNLYILATQLD 491
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ +E + +L + K S A+ + R+L
Sbjct: 492 ALQKYSGAETAKPPKLNRLGGQE---------------WKKTKSRVRGAVQNIARELVEL 536
Query: 126 DSQPEKSYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSSKS 173
+ ++ ++ R E + + AI + ++ S
Sbjct: 537 YAVRQEKEGYVCGPDTVWQREFEEMFPYEETEDQLAAIEDTKKDMESTK 585
>gi|15639335|ref|NP_218784.1| transcription-repair coupling factor (trcF) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025577|ref|YP_001933349.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum SS14]
gi|3322623|gb|AAC65332.1| transcription-repair coupling factor (trcF) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018152|gb|ACD70770.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum SS14]
Length = 1140
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/162 (9%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ +G+G I+ + A + + +V + + +P+ +A +
Sbjct: 475 ELNPGDYVVHAQYGIGLFKGIERIKTAQSERD-YVNLLYAQEETILIPIEQAHLVQRYIG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E + ++ S+ + A++ ++V + +
Sbjct: 534 NEGNK------------PHLDSLGSKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHA 581
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ A + + I ++ ++
Sbjct: 582 FPKDDEWQYA---FEAAFPYEETDDQRICIEEVKQDMQEAVP 620
>gi|303253501|ref|ZP_07339640.1| transcription-repair coupling factor [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307248372|ref|ZP_07530395.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|302647611|gb|EFL77828.1| transcription-repair coupling factor [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306855110|gb|EFM87290.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 1149
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|262376147|ref|ZP_06069377.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145]
gi|262308748|gb|EEY89881.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145]
Length = 1152
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 43/164 (26%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ +GVG + + EF + + + VPV I
Sbjct: 480 TELTMGAPVVHIDYGVGRYAGLVTLSIDDQDHEFLQLDYADA-AKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ L + A K L I +V +L ++
Sbjct: 539 GGDPDLAP--LHKLGTDA--------------WNKAKRKALEQIHDVAAELLHIQARRSS 582
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A ++ + AI ++
Sbjct: 583 KPGISFEVDQSLYMQFASGFAYEETLDQANAIEATLHDMQQAKP 626
>gi|255321495|ref|ZP_05362653.1| transcription-repair coupling factor [Campylobacter showae RM3277]
gi|255301351|gb|EET80610.1| transcription-repair coupling factor [Campylobacter showae RM3277]
Length = 985
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 18/163 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ +G+G T +++ V G EF VI +++ L +PV I
Sbjct: 342 DELKAGDYVVHEEYGIGKFTGLEKLTVLGRTREFVVI-VYQNEDKLLLPVEHLNLIDRY- 399
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
L + + AKI + + + +Q E
Sbjct: 400 -VAGSGSIAVLDRLG--------------KANFAKIKEKVRAKLFVIASKIISLAAQREL 444
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E E A ++ + + A + I +L S
Sbjct: 445 IRGEIIEKEDAEYLNFLQNAGFAYTRDQERASSDIANDLKSGK 487
>gi|299143244|ref|ZP_07036324.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298517729|gb|EFI41468.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 1161
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HG+G K EV +K ++ VI K + L +P+ I
Sbjct: 492 EDLNIGDYVVHEVHGIGKYIGTKRLEVQNVKKDYIVIE-YKGEDKLFLPIESLNLIYKYV 550
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
SE GKA + S + +K ++++ +
Sbjct: 551 GSE------------GKAPKVNKLNSLEWSKTKSKAKKSVEDMAEDLIKLYAKRQEVKGF 598
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++SE ++ + + E+ I+ ++ S
Sbjct: 599 AFSEDTQWQR---EFEDAFEYEETQGQLESSEEIKNDMQSDKP 638
>gi|332198663|gb|EGJ12746.1| transcription-repair coupling factor [Streptococcus pneumoniae
GA41317]
Length = 1169
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKGIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GK + ++ K+ + ++++ +
Sbjct: 547 S------------DGKVPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASHP 633
>gi|303250575|ref|ZP_07336772.1| transcription repair coupling factor [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252980|ref|ZP_07534867.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302650563|gb|EFL80722.1| transcription repair coupling factor [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306859509|gb|EFM91535.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 1149
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|225166092|ref|ZP_03727826.1| transcription-repair coupling factor [Opitutaceae bacterium TAV2]
gi|224799663|gb|EEG18158.1| transcription-repair coupling factor [Opitutaceae bacterium TAV2]
Length = 833
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 51/168 (30%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+H+V+ HG+ + +V E + + + L VP+ ++
Sbjct: 123 QLLDFAELVEGDHVVHLQHGIAIYRGLTRIDVNASIRE-VITLEFDEGVTLHVPLQESHL 181
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + + S R ++ + AE++R +
Sbjct: 182 ISRYVG------------LSKTRPQLGKIGSNRWEKTRRAAEHATIDLAAELLRIQAARE 229
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+QP ++ ++ + + AI + ++
Sbjct: 230 AQPGHAFDPDNDWQ---QEFEAAFPFTETPDQLRAITETKADMERPRP 274
>gi|165976764|ref|YP_001652357.1| transcription repair coupling factor [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165876865|gb|ABY69913.1| transcription repair coupling factor [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 1149
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|126696368|ref|YP_001091254.1| transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9301]
gi|126543411|gb|ABO17653.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
str. MIT 9301]
Length = 1169
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 56/176 (31%), Gaps = 22/176 (12%)
Query: 4 QQKRDAMRQ-----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++K+ ++ G+ IV+ HG+G +I++ + G ++ VI + +
Sbjct: 476 RRKKRSVNSNINVNKISPGDFIVHKNHGIGKFLKIEKINLTGDSRDYLVIQY--QDGKIS 533
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + + + S + + K ++
Sbjct: 534 VAADQLGSVNRYRSSGK------------IKPKINKLGGTEWERIKDKNKKQIKKVAVDI 581
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + Y E ++ + + + + A+ I+ ++ S
Sbjct: 582 LKLYAKREKLKGHIYPEDGPWQ---DELEESFPYQPTPDQITAVKEIKSDMESDKP 634
>gi|291059734|gb|ADD72469.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 1155
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/162 (9%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ +G+G I+ + A + + +V + + +P+ +A +
Sbjct: 490 ELNPGDYVVHAQYGIGLFKGIERIKTAQSERD-YVNLLYAQEETILIPIEQAHLVQRYIG 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E + ++ S+ + A++ ++V + +
Sbjct: 549 NEGNK------------PHLDSLGSKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHA 596
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ A + + I ++ ++
Sbjct: 597 FPKDDEWQYA---FEAAFPYEETDDQRICIEEVKQDMQEAVP 635
>gi|239629010|ref|ZP_04672041.1| transcription-repair coupling factor [Clostridiales bacterium
1_7_47_FAA]
gi|239519156|gb|EEQ59022.1| transcription-repair coupling factor [Clostridiales bacterium
1_7_47FAA]
Length = 1186
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 16/170 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
Q K G+++V+ HG+G I++ E + ++ I D L +P +
Sbjct: 503 QGKAIQSFSELSVGDYVVHEEHGLGIYKGIEKVERDKVIKDYIKIE-YGDGGNLYLPATR 561
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I + K + + ++ ++V+
Sbjct: 562 LESIQKYAGA------------DAKKPKLNKLGGTEWGKTKTRVKGAVQEIAKDLVKLYA 609
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y +++ + + + +AI+ ++ ++ S+
Sbjct: 610 ARQEKAGFQYGHDTVWQREFEEL---FPYDETDDQMDAIDAVKTDMESRR 656
>gi|307264008|ref|ZP_07545608.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|306870619|gb|EFN02363.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 1149
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|285018831|ref|YP_003376542.1| transcription-repair coupling factor protein [Xanthomonas
albilineans GPE PC73]
gi|283474049|emb|CBA16550.1| probable transcription-repair coupling factor protein [Xanthomonas
albilineans]
Length = 1166
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 49/163 (30%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 496 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 554
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E AK + +V +L ++ +
Sbjct: 555 ASAETAP--LHSLGG--------------EQWAKAKRKAAEKVRDVAAELLEIQARRQAR 598
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI +L+S
Sbjct: 599 AGLALQVDRAMYEPFAAGFPFEETPDQLAAIEATLRDLASSQP 641
>gi|78048574|ref|YP_364749.1| transcription-repair coupling factor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037004|emb|CAJ24723.1| transcription-repair coupling factor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 1154
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 484 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 542
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E + + +V +L ++
Sbjct: 543 ASAETAP--LHSLGG--------------EQWTRAKRKAAEKVRDVAAELLEIQARRRAR 586
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 587 AGLALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQP 629
>gi|53728955|ref|ZP_00134409.2| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126208803|ref|YP_001054028.1| transcription-repair coupling factor [Actinobacillus
pleuropneumoniae L20]
gi|126097595|gb|ABN74423.1| transcription-repair coupling factor [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 1149
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|224824692|ref|ZP_03697799.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
gi|224603185|gb|EEG09361.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
Length = 1129
Score = 83.7 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 43/166 (25%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ HG+G + ++ + E + D L VPV + I
Sbjct: 462 DLAEVKVGDPVVHEQHGIGRYLGLVSMDLGEGETE-LMQLEYADGAKLYVPVSQLQLISR 520
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ L + A K + + +L +Q
Sbjct: 521 YAGGATE--QLTLHRLGSPAWDKAKKKAA--------------EKARDTAAELLNLYAQR 564
Query: 130 EKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AI + ++ S
Sbjct: 565 AAREGHAFSLNHHDYDAFAAGFGFEETPDQASAIEAVIADMCSGKP 610
>gi|108803751|ref|YP_643688.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM
9941]
gi|108764994|gb|ABG03876.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM
9941]
Length = 1054
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 52/167 (31%), Gaps = 21/167 (12%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+ +V+ G+G + +EV G+ ++ + + L VP + +
Sbjct: 393 TSFADLKPGDLVVHAVQGIGRFEGLVSKEVLGVTRDYMQV-TYRGGDTLFVPYEQMELLH 451
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
A L + G E A++ + + +L R ++
Sbjct: 452 KYVGDGAR-----LDRLGG--------------ESWARVTERVRRRVRMLAGELLRLHAE 492
Query: 129 PEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + R + + + AI ++ ++
Sbjct: 493 RARAEGFAFPPDGEWERELEESFPYQETPDQAAAIAAVKEDMQRPRP 539
>gi|300868792|ref|ZP_07113400.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
gi|300333202|emb|CBN58592.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
Length = 1226
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 14/175 (8%), Positives = 56/175 (32%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + +++V+ HG+G ++ + E+ VI + L++
Sbjct: 543 KRRRAASKQVDPNKLSANDYVVHRQHGIGRFLRLESLTINQETREYLVIQY--GDGTLRI 600
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + V +A + ++ ++ AK+ +++
Sbjct: 601 AADQLGALSR------------FRTVGDRAPELNKLSAQTWEKTKAKVRKSIKKLAVDLL 648
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q ++ ++ + + + +A ++ ++
Sbjct: 649 NLYAKRAQQVGFAFPPDMPWQ---QELEDSFPYQPTPDQLKATQDVKRDMEGDRP 700
>gi|91215486|ref|ZP_01252457.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
700755]
gi|91186438|gb|EAS72810.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
700755]
Length = 1121
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G E V F D+ L +
Sbjct: 419 AKKQAITLKELTSLEIGDYVTHIDHGIGKFGGLQKIDVEGKFQEA-VKLFYGDRDILYLS 477
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GKA + S+ + K + ++++
Sbjct: 478 IHSLHKISK------------FNGKDGKAPQVYKLGSKAWKSLKNKTKARVKKVAFDLIK 525
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Y + + + ++ + A ++ ++ +
Sbjct: 526 LYAKRKLEKGFQYGPDSHLQ---HELEASFIYEDTPDQGIATQDVKSDMEKEQP 576
>gi|86135186|ref|ZP_01053768.1| transcription-repair coupling factor [Polaribacter sp. MED152]
gi|85822049|gb|EAQ43196.1| transcription-repair coupling factor [Polaribacter sp. MED152]
Length = 1110
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 54/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ Q G+++ + HG+G +++ +V G K E + ++ L V
Sbjct: 417 AKKQAITLQELNKLEIGDYVTHMDHGIGKFGGLQKIDVQGKKQEAIKL-IYGERDILYVS 475
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S ++ K + +++
Sbjct: 476 IHSLHKISK------------FNGKDGKPPKIYKLGSGAWKKIKQKTKARVKHIAFNLIQ 523
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q ++ + + + ++ + A ++ ++
Sbjct: 524 LYAKRKLQKGFAFGPDTHIQ---HELEGSFMYEDTPDQYSATQDVKRDMEKDQP 574
>gi|282900454|ref|ZP_06308403.1| Transcription-repair coupling factor [Cylindrospermopsis
raciborskii CS-505]
gi|281194647|gb|EFA69595.1| Transcription-repair coupling factor [Cylindrospermopsis
raciborskii CS-505]
Length = 1171
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/175 (10%), Positives = 58/175 (33%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K + R G+ +V+ +HG+G +++ + ++ VI + L+V
Sbjct: 494 KRRKAASKQVDPNKLRAGDFVVHRSHGIGKFVKLESLTINDETRDYLVIQYA--DGVLRV 551
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + + M S+ +K+ +++
Sbjct: 552 AADQVGSLSR------------FRTNLDRPPQLHKMTSKAWDNTKSKVKKAIKKLAVDLL 599
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q SY + ++ + + + +A+ ++ ++ S
Sbjct: 600 QLYAARSQQEGFSYPQDMPWQEEME---DSFPYQPTTDQLKAVQDVKRDMESPRP 651
>gi|209525598|ref|ZP_03274136.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
gi|209493931|gb|EDZ94248.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
Length = 1167
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 62/175 (35%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ + + G+++V+ HG+G +++ + ++ V+ + L+V
Sbjct: 482 KRRRAASKQVDPNRLQPGDYVVHRQHGIGKFVKLESLTINQEIRDYLVLQYA--DGTLRV 539
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + SE+ + L + GKA ++ K+ +++
Sbjct: 540 AADQVGTLSRLRRSESKVPQ--LNKLTGKA----------WEKSREKVGKSIKKLAVDLL 587
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + SY + ++ + + + + ++ ++ S
Sbjct: 588 KLYAERSQKTGFSYPQDTPWQQEME---DSFPYQPTPDQLKCSQDVKRDMESDRP 639
>gi|281420665|ref|ZP_06251664.1| transcription-repair coupling factor [Prevotella copri DSM 18205]
gi|281405438|gb|EFB36118.1| transcription-repair coupling factor [Prevotella copri DSM 18205]
Length = 1137
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 50/165 (30%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + AG + + + + V + I
Sbjct: 441 ELQEMEVGDFIVHVDFGIGKFGGLVRI-PAGNSYQEMIRIVYTNNDKVDVSIHSLYKISK 499
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ S+ G T+ + + K ++++ + +
Sbjct: 500 YRRSDT-----------GTPPRLSTLGTGAWDKLKDKAKKRIKDIARDLIKLYAQRRREK 548
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 549 GFAFSADNYLQ---HTLEASFLYEDTPDQNKATQEVKKDMESGRP 590
>gi|307257406|ref|ZP_07539175.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864058|gb|EFM95972.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 1149
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLLYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|225619936|ref|YP_002721193.1| transcription-repair coupling factor [Brachyspira hyodysenteriae
WA1]
gi|225214755|gb|ACN83489.1| transcription-repair coupling factor [Brachyspira hyodysenteriae
WA1]
Length = 1247
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 52/161 (32%), Gaps = 16/161 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G++ V+ +G+G + + G + ++ + + K L +PV + +
Sbjct: 518 DLNVGDYAVHVNYGIGKYLGLTRKMSNGKEKDYITLEYAKGD-KLYIPVEQMNFVQKYIS 576
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
G+A + + +K L E+++ +
Sbjct: 577 G------------HGEAPKLTQLGGSAWDKIKSKAREDALATARELIKLYAIRSNIRGNV 624
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y ++ + ++ + AIN I+ ++ S
Sbjct: 625 YGPDTQWQ---DDFEASFRYEETVDQLRAINDIKEDMESGK 662
>gi|307261826|ref|ZP_07543490.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868443|gb|EFN00256.1| Transcription-repair-coupling factor [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 1149
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +V+ +GVG + + G+K E+ V+ + + L VPV I
Sbjct: 482 ELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLLYAN-EAKLYVPVASLHLISRYIG 540
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ S + K AE++ + +SQ +
Sbjct: 541 GADETAP------------LHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFA 588
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + + AIN + ++ +
Sbjct: 589 FAYDR---DSFMQFSHTFPFEETEDQKTAINAVISDMCLPKA 627
>gi|291527305|emb|CBK92891.1| Transcriptional regulators, similar to M. xanthus CarD [Eubacterium
rectale M104/1]
Length = 164
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 9/165 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKL---EFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++++ +G+ I+EI E +++G K F + +++ + +PV A +
Sbjct: 1 MFEIGDYVLNATNGICKISEIVELDMSGDKQLKSYFLLRPVEEENDRVYIPVDNADK-RI 59
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RK+ L V + R Y + S + ++ +++ LH + Q
Sbjct: 60 RKVITQDEALAVLDRVPEIEALAVNNEKERETRYKEAVRSCEPDSVISLLKCLHIRNEQR 119
Query: 130 EK-----SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + + + + A + + E+A V E ++I L
Sbjct: 120 AQAGKKSTAVDERYGKMAEHNLNAELAFVLEKDRQEIKDIIHDML 164
>gi|227874315|ref|ZP_03992500.1| CarD family transcriptional regulator [Oribacterium sinus F0268]
gi|227839803|gb|EEJ50248.1| CarD family transcriptional regulator [Oribacterium sinus F0268]
Length = 169
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 7/168 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGM--KLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+++G ++VY GV I + G+ E++++ K +A MR
Sbjct: 1 MYQSGTYVVYGCKGVHKIIGTTHLNLEGIPKDKEYYILQAVKKPDGAVYAPVEAGKTNMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT----- 125
+ E + V ++ +R + I S A+ +V++ L
Sbjct: 61 SVMTREQAESFMLGVENIHALQCKTPKQREENCRDSIKSCAPDALLQVIKTLMERRVERA 120
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + E A + + E++ SI E I + K+
Sbjct: 121 RQGKKLTLLDLHFMEQAEDILYEELSISLSIPRVEVEERIHAHSPKKA 168
>gi|24215213|ref|NP_712694.1| transcription-repair coupling factor [Leptospira interrogans
serovar Lai str. 56601]
gi|24196293|gb|AAN49712.1|AE011418_8 transcription-repair coupling factor [Leptospira interrogans
serovar Lai str. 56601]
Length = 1186
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +K+++ + G+++V+ HGVG +I+ G + +F + L
Sbjct: 504 TRFKKQNSKALQSFIDLKEGDYVVHIHHGVGKFLKIERTSAGGKERDFLKLE-YSGGDSL 562
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ + + +L + K A+
Sbjct: 563 FVPLDQISLVQRYIGGTESPRLDSLG-----------------KSTWKKTKDRVQKAVEA 605
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ DL + S K ++ E + + EAI ++ +L S
Sbjct: 606 LAEDLVQMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIEAIEAVKKDLESSRP 663
>gi|45657330|ref|YP_001416.1| transcription-repair coupling factor [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|45600568|gb|AAS70053.1| transcription-repair coupling factor [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 1186
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +K+++ + G+++V+ HGVG +I+ G + +F + L
Sbjct: 504 TRFKKQNSKALQSFIDLKEGDYVVHIHHGVGKFLKIERTSAGGKERDFLKLE-YSGGDSL 562
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ + + +L + K A+
Sbjct: 563 FVPLDQISLVQRYIGGTESPRLDSLG-----------------KSTWKKTKDRVQKAVEA 605
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ DL + S K ++ E + + EAI ++ +L S
Sbjct: 606 LAEDLVQMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIEAIEAVKKDLESSRP 663
>gi|225011211|ref|ZP_03701670.1| transcription factor CarD [Flavobacteria bacterium MS024-3C]
gi|225004625|gb|EEG42588.1| transcription factor CarD [Flavobacteria bacterium MS024-3C]
Length = 681
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 53/166 (31%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+++ + HG+G +++ V G K E ++ ++ L V + I
Sbjct: 432 SELNKLEIGDYVTHIDHGIGKFGGLQKIAVEGKKQEAIKLS-YGERDVLYVSIHSLHKI- 489
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
G + S ++ K S ++++ + Q
Sbjct: 490 -----------AKFNGKDGSPPKIYKLGSGAWKKVKEKTKSRVKKLAFDLIQIYAKRRLQ 538
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + ++ + A I+ ++ S+
Sbjct: 539 KGFQYAADSSLQ---HELEASFLYEDTPDQLTATEDIKKDMESERP 581
>gi|154147968|ref|YP_001406057.1| transcription-repair coupling factor [Campylobacter hominis ATCC
BAA-381]
gi|153803977|gb|ABS50984.1| transcription-repair coupling factor [Campylobacter hominis ATCC
BAA-381]
Length = 986
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 18/169 (10%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K + G+ +V+ +GV ++ EV G K EF V+ L +PV
Sbjct: 339 RKSSLAVDELQIGDFVVHENYGVAKFAGLELIEVLGSKSEFVVLE-YFGGDKLLLPVQNL 397
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I S +++ GK + R + + A E+VR +
Sbjct: 398 NLIDRYIASGVATLDKL-----GKTGFAKIKEKVREKLFAIASKIIQTAAARELVRGIVI 452
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ PE + + + + A+N I +L S
Sbjct: 453 ENNTPE------------YAKFLSSAGFEYTKDQQNAVNAIFTDLKSGK 489
>gi|149912292|ref|ZP_01900862.1| putative transcription-repair coupling factor [Moritella sp. PE36]
gi|149804626|gb|EDM64687.1| putative transcription-repair coupling factor [Moritella sp. PE36]
Length = 1106
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ HGVG ++ AGM+ EF + + L VPV I
Sbjct: 481 TELSIGQPVVHIEHGVGRYLGLQIIANAGMETEFLTLEYANA-AKLYVPVSALHLISRYS 539
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ K S + A D+ A + S +
Sbjct: 540 GAGET----------SAPLHKLGSDSWVKSKNKAMERVRDVAAELLDIYAQRAAKSGFQY 589
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + AI + ++
Sbjct: 590 KCD-----KESYAAFADGFPFEETDDQKTAIQDVMDDMRQNK 626
>gi|83816849|ref|YP_444216.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855]
gi|83758243|gb|ABC46356.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855]
Length = 1142
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 18/159 (11%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ +V+ HG+G +K+ V + E + F + + + V + K +
Sbjct: 456 GDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDV---LYVNVHALHKLNKYTGKE 512
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
+ L + E K + EV RDL + ++ + S
Sbjct: 513 GHQPTLTKLGS--------------EQWEKKKQRTKDQVKEVARDLIKLYAKRKASDGYA 558
Query: 137 QLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ R M ++ + EA ++ ++
Sbjct: 559 FSSDTTWQREMEASFEFEDTPDQAEATKAVKRDMEEPVP 597
>gi|58038544|ref|YP_190508.1| transcription-repair coupling factor [Gluconobacter oxydans 621H]
gi|58000958|gb|AAW59852.1| Transcription-repair coupling factor [Gluconobacter oxydans 621H]
Length = 1173
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 60/177 (33%), Gaps = 21/177 (11%)
Query: 2 TFQQKR----DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++KR + G+ +V+ +G+G ++ V G ++ + L
Sbjct: 479 PRRRKRGEQFISQVGEIAEGDLVVHSDYGIGRYVGLETV-VEGRVAHDYLSILYDGEQRL 537
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV + R SE V+ ++ T W R AK+ S + E
Sbjct: 538 LLPVENIELL-SRFGSEQVGVQ--------LDKLGGTAWQAR----KAKMKSRIRVMAGE 584
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + + + + V + + AI + ++S+
Sbjct: 585 LIKTAAARALKDAPTLAPAEGL---WDEFCARFPFVETEDQSRAIADVLEDMSAGRP 638
>gi|229825975|ref|ZP_04452044.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
49176]
gi|229789717|gb|EEP25831.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
49176]
Length = 1184
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 56/161 (34%), Gaps = 18/161 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++++ HG+G I++ V G+ ++ + + + VP +
Sbjct: 503 SELHEGDYVIHENHGIGVYRGIEQFTVEGVTKDYVKVD-YSGDVSIFVPTTNLDVLQKYS 561
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ ++ W K S +I+E+ RDL ++ ++
Sbjct: 562 SANGAK--------PKIDKIGGQAWK--------KTKSKVRQSISEIARDLVELYAKRQQ 605
Query: 132 SYSERQLYESALNRMVRE-IAAVNSISEPEAINLIEVNLSS 171
R ++ + E + + AI ++ ++ S
Sbjct: 606 EQGFRYGKDTVWQQEFEEMFPYDETDDQLNAIKDVKADMES 646
>gi|282896750|ref|ZP_06304758.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
gi|281198468|gb|EFA73356.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
Length = 1202
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/175 (10%), Positives = 57/175 (32%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K + R G+ +V+ +HG+G +++ + ++ VI + L+V
Sbjct: 494 KRRKAASKQVDPNKLRAGDFVVHRSHGIGKFVKLESLTINDETRDYLVIQYA--DGVLRV 551
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + + M + K+ +++
Sbjct: 552 AADQVGSLSR------------FRTNLDRPPQLHKMTGKAWDNTKNKVKKAIKKLAVDLL 599
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q SY + ++ + +I + +A+ ++ ++ S
Sbjct: 600 QLYAARSQQEGFSYPQDMPWQEEME---DSFPYQPTIDQLKAVQDVKRDMESPRP 651
>gi|256827273|ref|YP_003151232.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum
DSM 15641]
gi|256583416|gb|ACU94550.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum
DSM 15641]
Length = 1155
Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 55/161 (34%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F G+++V+ AHG+ ++ QEV G ++ ++ + + L VPV + +
Sbjct: 486 FNPGDYVVHAAHGIAFFRDVVRQEVGGSLRDYLLLEYA-EGDKLYVPVEQLDRVTRYVGP 544
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
E G + + + ++V R + Y
Sbjct: 545 E------------GSSPRLTRLNTSDWSRAMGCARKASKKLAFDLVDVYTRRSAVSGFQY 592
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S + + +M + + + AI ++ ++ S
Sbjct: 593 SADTPW---MRQMEEDFPYQETPDQLAAIADVKADMRSARP 630
>gi|152993618|ref|YP_001359339.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
gi|151425479|dbj|BAF72982.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
Length = 994
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 18/163 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ HGVG I++++V G EF VI F +++ L +PV I
Sbjct: 354 DELKPGDYVVHENHGVGIFKGIEKRDVLGATSEFVVI-FYQNEDSLLIPVSSLEVIDRY- 411
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
L + + K+ + + + +Q
Sbjct: 412 -VAEGGALPVLDRLG--------------KASFKKLKGKVREKLFAIASQIINLSAQRHL 456
Query: 132 SYSERQLYESALNRMV-REIAAVNSISEPEAINLIEVNLSSKS 173
R + + + + +++ + AIN + ++SS
Sbjct: 457 KKGIRMKIDREEHTLFMSKAGFLHTEDQERAINDMLDDMSSGR 499
>gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
Length = 1150
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDAMRQG-------FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ ++K + R F+ G+++V+ HG+ EI +E AG ++F++ +
Sbjct: 468 SARKKHRSKRIDPTSVTFPFKPGDYVVHAKHGIAYFKEIVREEAAGRMRDYFLLEYAHGD 527
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VP + + G A + + AK
Sbjct: 528 -KLYVPFEQVDRLTRYVG------------PDGAAPRLTRLSTADWSRATAKARKSAKKL 574
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++V R S P ++S + + + + A+ I++++ ++
Sbjct: 575 AFDLVDLYTRRASVPGYAFSFDTPEQEEME---SAFPYQMTPDQESALADIKLDMEARKP 631
>gi|78357082|ref|YP_388531.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219487|gb|ABB38836.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 1152
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 41/163 (25%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ +GV + ++ G+ ++ ++ + L +PV + +
Sbjct: 485 DDLEAGAMLVHRDYGVARFEGLLRMDLGGVSNDYLLLRYAG-DDKLYLPVDRLSLVQR-- 541
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
K G A + +K ++V
Sbjct: 542 ----------FKGPDGTAPSLDKLGGAGWSASKSKARKAIERIAHDLVEMYAWRKVAKGY 591
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
YS + + AI + ++
Sbjct: 592 RYSPVNDM---YREFEASFGFEETPDQARAIEDVLDDMERAEP 631
>gi|332665410|ref|YP_004448198.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
DSM 1100]
gi|332334224|gb|AEE51325.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
DSM 1100]
Length = 1141
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 50/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + G+ + + HG+G ++ V G E V K+ L V + I
Sbjct: 455 RDLQPGDFVTHIDHGIGQFKGLQTINVNGHVQEC-VRLVYKNNDLLYVSINSLHKIAKYV 513
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
E G + S + AK E+++ + + P
Sbjct: 514 GKE------------GTPPQLNKLGSDAWRNLKAKTKKKVKDIAGELIKLYAQRKASPGF 561
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++ + + ++ + +A + +++
Sbjct: 562 AFAPDNYMQV---ELESSFIYEDTPDQLQATIDTKNDMTKPYP 601
>gi|325928058|ref|ZP_08189271.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
91-118]
gi|325541556|gb|EGD13085.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
91-118]
Length = 1110
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G IV+ HGVG + + GM EF I + K L VPV + I
Sbjct: 440 ELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD-RLYVPVAQLHLISRYSG 498
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A L + G E + + +V +L ++
Sbjct: 499 ASAETAP--LHSLGG--------------EQWTRAKRKAAEKVRDVAAELLEIQARRRAR 542
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + + AI+ +L S
Sbjct: 543 AGLALQVDRAMYEPFAAGFPFEETGDQLAAIDATLRDLGSSQP 585
>gi|295108814|emb|CBL22767.1| Transcription-repair coupling factor (superfamily II helicase)
[Ruminococcus obeum A2-162]
Length = 693
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 51/168 (30%), Gaps = 15/168 (8%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
KR G+ +V+ HG+G I++ V + ++ I ++ L + +
Sbjct: 433 KRIQDFSELSIGDFVVHEKHGLGIYRGIEKVAVDKVAKDYIKIE-YRNGSNLYILATQLD 491
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ +E K + + ++ +K+ E+V
Sbjct: 492 ALQKYSGAETA-----------KPPKLNRLGGQEWKKTKSKVKGAVRNIARELVELYAVR 540
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +++ M + + AI + ++ S
Sbjct: 541 QEKEGYVCGPDTVWQREFEEM---FPYEETEDQLSAIEDTKRDMESTK 585
>gi|284046682|ref|YP_003397022.1| transcription-repair coupling factor [Conexibacter woesei DSM
14684]
gi|283950903|gb|ADB53647.1| transcription-repair coupling factor [Conexibacter woesei DSM
14684]
Length = 1112
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
RTG+ +V+ HG+ + VAG+ ++ + + + +PV + I
Sbjct: 444 TDLRTGDIVVHEDHGLARFAGFDTKTVAGVTRDYLNLEYAGSD-KVFMPVDQFAKISRYV 502
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + RR A+ E++ +
Sbjct: 503 GAGGDH------------PPLSKLGGRRWDTLKARARRAAQEMAGELLNLYAERKRRAGH 550
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + EAI ++ ++ +
Sbjct: 551 AFPPDSDW---MREFEDAWPYRETPDQREAIEQVKTDMETARP 590
>gi|171910874|ref|ZP_02926344.1| transcription-repair coupling factor [Verrucomicrobium spinosum DSM
4136]
Length = 1117
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ R G+ +V+ +G+G I+ +E G + E ++ + + VPV +A +
Sbjct: 434 RELREGDLVVHLDYGIGKYGGIEVRE--GARREEVMVIRYAEDAKVFVPVSQAHLVSRYV 491
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+A + R + A+ A ++ + +
Sbjct: 492 GVG------------SRAPTLNKLGDARWVKTRAQAEKSVEEFAAGMLSIAAQRQTLKGH 539
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++ + + + ++I I+ ++ +
Sbjct: 540 AHPPDTKWQV---EFEQSFLYRETPDQLKSIAEIKRDMEQEKP 579
>gi|293374795|ref|ZP_06621100.1| CarD-like protein [Turicibacter sanguinis PC909]
gi|325845328|ref|ZP_08168630.1| CarD-like protein [Turicibacter sp. HGF1]
gi|292646591|gb|EFF64596.1| CarD-like protein [Turicibacter sanguinis PC909]
gi|325488647|gb|EGC91054.1| CarD-like protein [Turicibacter sp. HGF1]
Length = 164
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 66/165 (40%), Gaps = 8/165 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
FR ++IVY GV + IKE+ + + + +M +KV V + +R
Sbjct: 1 MFRIDDYIVYGLTGVCKVKGIKEECFLNYPAQSFYILSPISSPEMTIKVSVAHGNET-IR 59
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD---- 126
+ V + ++ + + R Q++ + G+ + +V+ ++
Sbjct: 60 MVHSKDEVNQLIQGIPDLELLWIKDDRERNQKFRCMVKQGNCSDLITIVKTIYSYRTLED 119
Query: 127 -SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ S+ +++E A + E+ + ++ E N IE ++
Sbjct: 120 FKGTRLNKSDDEVFEIAEKLLNEELGFILDLNPEEIPNYIEQYIA 164
>gi|238924916|ref|YP_002938432.1| hypothetical protein EUBREC_2567 [Eubacterium rectale ATCC 33656]
gi|238876591|gb|ACR76298.1| Hypothetical protein EUBREC_2567 [Eubacterium rectale ATCC 33656]
gi|291525961|emb|CBK91548.1| Transcriptional regulators, similar to M. xanthus CarD [Eubacterium
rectale DSM 17629]
Length = 164
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 9/165 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKL---EFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G++++ +G+ I+EI E +++G K F + +++ + +PV A +
Sbjct: 1 MFEIGDYVLNATNGICKISEIVELDMSGDKQLKSYFLLRPVEEENDRVYIPVDNADK-RI 59
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RK+ L V + R Y + S + ++ +++ LH + Q
Sbjct: 60 RKVITQDEALAVLDRVPEIEALAVNNEKERETRYKEAVRSCEPDSVISLLKCLHIRNEQR 119
Query: 130 EK-----SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + + + + A + + E+A V + E ++I L
Sbjct: 120 AQAGKKSTAVDERYGKMAEHNLNAELAFVLEKDKQEIKDIIHDML 164
>gi|325971064|ref|YP_004247255.1| transcription-repair coupling factor [Spirochaeta sp. Buddy]
gi|324026302|gb|ADY13061.1| transcription-repair coupling factor [Spirochaeta sp. Buddy]
Length = 1090
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 18/161 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ +GVG +I + +F IA+ ++M L VP+ +A +
Sbjct: 425 DLNEGDYVVHVNYGVGQFVKIDRVSSFDRERDFIKIAYADNEM-LYVPIEQANLVQRYIG 483
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S+ + K ++ W + ++ + L ++ + S
Sbjct: 484 SDTG--------LPKKDKLGGQGW--------ENKKAKARKNAEDLAKHLITLYAKRKNS 527
Query: 133 YSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSK 172
++ + + I I+ ++
Sbjct: 528 IGYAFPKDTDWQLQFEASFPFDETADQLSCIEDIKDDMEKP 568
>gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum
IMS101]
gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum
IMS101]
Length = 1180
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
++++ +Q + G+H+V+ HG+G +++ + ++ I + +
Sbjct: 484 RKRRQATSKQVNPNKLQPGDHVVHRQHGIGKFVKLESLTLNNETRDYLTIQYADGLLR-- 541
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + +L + L + GK + K+ ++
Sbjct: 542 --VAADQLSSLSRLRSTDHKKPQLNKLTGKT----------WESTKNKVRKSIKKLAVDL 589
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + Q S+ ++ + + + +A ++ ++ S+ +
Sbjct: 590 LKLYAQRAQQTGYSFPPDTPWQEEME---DSFPYQPTPDQLKATQDVKRDMESERA 642
>gi|116328533|ref|YP_798253.1| transcription-repair coupling factor [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116331261|ref|YP_800979.1| transcription-repair coupling factor [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116121277|gb|ABJ79320.1| Transcription-repair coupling factor [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116124950|gb|ABJ76221.1| Transcription-repair coupling factor [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 1176
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +K+++ + G+ +V+ HGVG +I+ G + +F + + L
Sbjct: 494 TRFKKQNSKALQSFIDLKEGDPVVHIHHGVGRFLKIERTNAGGKERDFLKLEYAGGDS-L 552
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ + I +L + K A+
Sbjct: 553 FVPLDQISLIQRYIGGTESPRLDSLG-----------------KNTWKKTKDRVQKAVET 595
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ DL + S K ++ E + + EAI ++ +L S
Sbjct: 596 LAEDLVQMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIEAIEAVKKDLESSVP 653
>gi|256545180|ref|ZP_05472546.1| transcription-repair coupling factor - superfamily II helicase
[Anaerococcus vaginalis ATCC 51170]
gi|256399221|gb|EEU12832.1| transcription-repair coupling factor - superfamily II helicase
[Anaerococcus vaginalis ATCC 51170]
Length = 1164
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K G+++V+ +G+G I + EV K ++FVI K + VPV +
Sbjct: 489 KDIINYSDIEIGDYVVHENNGIGIYKGISKIEVNNTKKDYFVIE-YKGNDKVFVPVDQMG 547
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + +G ++ S + ++ + ++V +
Sbjct: 548 LVSKYIGN------------KGDKPKISSLGSNQWKKAKQRAKKAVDEIADDLVELYAKR 595
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++SE ++ + S+ +IN I+ ++ +
Sbjct: 596 SKAKGHAFSEDTTWQ---KEFEDSFIYEETDSQVRSINEIKDDMENIKP 641
>gi|255527262|ref|ZP_05394143.1| transcriptional regulator, CarD family [Clostridium carboxidivorans
P7]
gi|296187241|ref|ZP_06855637.1| CarD-like transcriptional regulator [Clostridium carboxidivorans
P7]
gi|255509047|gb|EET85406.1| transcriptional regulator, CarD family [Clostridium carboxidivorans
P7]
gi|296048112|gb|EFG87550.1| CarD-like transcriptional regulator [Clostridium carboxidivorans
P7]
Length = 158
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 74/150 (49%)
Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77
+ + P +G G +T++++ + + ++ I D + L +P + +D +R ++
Sbjct: 6 QKVFVPNYGAGIMTKVEDSKSYDVNKKYVNIFILIDNINLYIPEDRLLDYRIRNITSKEN 65
Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQ 137
+++A +++ K + WS+R ++ + KI GD + EV+RDL+ S+ ER+
Sbjct: 66 LDKAFDIIKSKPQTIEKKWSKRYKKNNDKIKEGDFFQMCEVIRDLYYLKSKGTIPPGERR 125
Query: 138 LYESALNRMVREIAAVNSISEPEAINLIEV 167
+ + N + EIA + I A+ I
Sbjct: 126 ILDKVENMVGSEIALLLGIKIEAALGEIRK 155
>gi|167768343|ref|ZP_02440396.1| hypothetical protein CLOSS21_02899 [Clostridium sp. SS2/1]
gi|167709867|gb|EDS20446.1| hypothetical protein CLOSS21_02899 [Clostridium sp. SS2/1]
gi|291560315|emb|CBL39115.1| Transcriptional regulators, similar to M. xanthus CarD
[butyrate-producing bacterium SSC/2]
Length = 166
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 64/166 (38%), Gaps = 7/166 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAG--MKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
++ G++++ G+ I ++ +++G E++ +A K + +R
Sbjct: 1 MYKKGDYVIKIPEGICEIEDVGCLDMSGVNKDKEYYALAPINQKGSKIYIPVDNVHGRIR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
+ +K + R QEY A I SGD IA +++ ++ +
Sbjct: 61 NIISKEDAIAFIKSMPDIDEKDIQNEKMREQEYKAVILSGDNEKIASILKLIYSRKQERA 120
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ S ++ + ++ A + E++ V ++ I + +
Sbjct: 121 EQGKKLSSTDERYFKLAEYMLFSELSFVLNVPREHIEQYIADMIEA 166
>gi|169833013|ref|YP_001693440.1| transcription-repair coupling factor [Streptococcus pneumoniae
Hungary19A-6]
gi|168995515|gb|ACA36127.1| transcription-repair coupling factor [Streptococcus pneumoniae
Hungary19A-6]
Length = 1169
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ + + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKEIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|168491776|ref|ZP_02715919.1| transcription-repair coupling factor [Streptococcus pneumoniae
CDC0288-04]
gi|183573939|gb|EDT94467.1| transcription-repair coupling factor [Streptococcus pneumoniae
CDC0288-04]
Length = 1169
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ + + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKEIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307]
gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307]
Length = 1183
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 52/158 (32%), Gaps = 17/158 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ +V+ HG+G ++++ ++G ++ V+ + L+V + +G
Sbjct: 493 GDFVVHRNHGIGRFLKMEKLAISGDARDYLVVQYL--DGLLRVAADQLGSLGR------- 543
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
+ M + A+ ++V+ P ++
Sbjct: 544 -----FRASSDAPPQLNKMGGAAWAKTKARARKAVRKVAFDLVKLYAERTESPGFAFPVD 598
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ N + + + +AI ++ ++
Sbjct: 599 GPWQ---NELEDSFPYEPTPDQLKAITEVKRDMEQGKP 633
>gi|317504984|ref|ZP_07962932.1| transcription-repair coupling factor [Prevotella salivae DSM 15606]
gi|315663866|gb|EFV03585.1| transcription-repair coupling factor [Prevotella salivae DSM 15606]
Length = 1153
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 51/165 (30%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + AG + + + + V + I
Sbjct: 457 ELQEMEPGDFIVHVDFGIGKFGGLVRV-PAGNSYQEMIRIIYQHNDKVDVSIHSLYKISK 515
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ S+ G+ T+ + K ++++ + +
Sbjct: 516 YRRSDT-----------GEPPRLSTLGTGAWDRLKEKTKKRIKDIARDLIKLYAQRRHER 564
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S+
Sbjct: 565 GHAFSGDSYLQ---HELEASFLYEDTPDQSKATQDVKADMESQRP 606
>gi|149919813|ref|ZP_01908290.1| transcriptional regulator, CarD family protein [Plesiocystis
pacifica SIR-1]
gi|149819420|gb|EDM78851.1| transcriptional regulator, CarD family protein [Plesiocystis
pacifica SIR-1]
Length = 125
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGK-ARVKRTMWSRRAQEYDAKINSG 110
M L VP+ A +G+R L VE +++R + ++ W+RR +EY KI +G
Sbjct: 6 GKDMTLMVPMSNADSVGLRNLITNEQVEEVYEVLRKRGEKISTATWNRRHREYMDKIRTG 65
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
L IA V+RDL+ + SY ER + E+A +++E+A V +E E IE
Sbjct: 66 SLAKIATVLRDLYLLRGDKDLSYGERNMLETARALLIQELALVKEKTEDEVEKEIEAMF 124
>gi|260437494|ref|ZP_05791310.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
2876]
gi|292810127|gb|EFF69332.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
2876]
Length = 1177
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/168 (10%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K + G+++++ HG+G I++ V + ++ I +
Sbjct: 494 KSISDFSELSIGDYVIHENHGLGIYRGIEKIRVDKTEKDYIKIEYANGG----------- 542
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ L+ + + G + S + K+ ++++
Sbjct: 543 --NLYILATQLDMIQKYGDREGAKPKLNRLGSSEWTKTKTKVRGAVKQVADKLIKLYASR 600
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ ++S+ ++ + + + AI I+ ++ S
Sbjct: 601 SARQGFAFSKDTPWQQEFEEL---FPYEPTTDQLTAIEEIKTDMESTR 645
>gi|188996867|ref|YP_001931118.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931934|gb|ACD66564.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 938
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 18/161 (11%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
+ G++I++ G+G I+ +E+ G +F ++ + V I K
Sbjct: 290 LKEGDYIIHEDFGIGIYRGIETREIRGKVYDFMILE-YSGGEKVYVSYLHFDKIHKYKTD 348
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+++ S R + K + ++ + + +P
Sbjct: 349 SIIQIDKIGGT------------SWRNLKKKVKESLKNIAKNLLEIYSKRQNIYRPPLKT 396
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ RE V + + +AI I+ +
Sbjct: 397 DDELI-----SKFEREFPFVETPDQIKAIKDIKSDFLKPKP 432
>gi|187250582|ref|YP_001875064.1| transcription-repair coupling factor [Elusimicrobium minutum
Pei191]
gi|186970742|gb|ACC97727.1| Transcription-repair coupling factor [Elusimicrobium minutum
Pei191]
Length = 1044
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G++IV+ HG+G ++ + + VI + L VPV
Sbjct: 344 KRVRFKDLVEGDYIVHQTHGIGRYRGLETLDKDTAPTDALVIE-YRKGSKLFVPVQDFGK 402
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ +GK + +E ++ E+++
Sbjct: 403 VQKYIGV------------KGKTPPLSHLGGVAWKEVKRRVKEAAQKDAEEILKMEALRS 450
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ K + E+ + + + +AI+ I +L+ +
Sbjct: 451 AANAKPLTGDAQLEA---EFADSFPYIQTPDQSQAISEILDDLTRQK 494
>gi|15902050|ref|NP_357600.1| transcription-repair coupling factor [Streptococcus pneumoniae R6]
gi|116516151|ref|YP_815427.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
gi|15457534|gb|AAK98810.1| Transcription-repair coupling factor [Streptococcus pneumoniae R6]
gi|116076727|gb|ABJ54447.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
Length = 1169
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ + + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKEIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|168576116|ref|ZP_02722021.1| transcription-repair coupling factor [Streptococcus pneumoniae
MLV-016]
gi|307066642|ref|YP_003875608.1| transcription-repair coupling factor [Streptococcus pneumoniae
AP200]
gi|183578032|gb|EDT98560.1| transcription-repair coupling factor [Streptococcus pneumoniae
MLV-016]
gi|306408179|gb|ADM83606.1| Transcription-repair coupling factor (superfamily II helicase)
[Streptococcus pneumoniae AP200]
Length = 1169
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ + + +V ++ + +PV + +
Sbjct: 488 ELEKGDYVVHHIHGIGQYLGIETIEIKEIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 546
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 547 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 594
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 595 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 633
>gi|86130975|ref|ZP_01049574.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
gi|85818386|gb|EAQ39546.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
Length = 1159
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +K+ +V G E + ++ L +
Sbjct: 446 AKKQAITLKELTNLSVGDYVTHIDHGIGKFGGLKKIDVEGKMQEAIKL-IYGERDILYLS 504
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S+ ++ AK S +++
Sbjct: 505 IHSLHKITKYNG------------KDGKPPQVYKLGSQAWKKLKAKTKSKVKHIAFNLIK 552
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ Q ++ + + + ++ + ++ ++ S
Sbjct: 553 LYAKRRLQKGYAFGPDTHMQ---HELEASFIYEDTPDQSSVTEDVKRDMESDRP 603
>gi|332971576|gb|EGK10526.1| transcription-repair coupling factor [Kingella kingae ATCC 23330]
Length = 1126
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/180 (11%), Positives = 52/180 (28%), Gaps = 23/180 (12%)
Query: 2 TFQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
T ++K + G+ +V+ HG+ + + E ++ + +
Sbjct: 443 TRRRKHASVSDTTLRDLAEINIGDPVVHQEHGIARYMGLTVLDFGDGANEMMLLEYAN-E 501
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L VPV + I + + + ++ WS+ + K
Sbjct: 502 AQLYVPVAQLHLISRYAGNASEKI--------ALHKLGTNAWSKAKHKAAEKAR-----D 548
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 549 TAAELLNLYAQRAAQTGFKFEINELD--YQAFADGFGYEETEDQAAAILAVMKDLTQAKP 606
>gi|325266091|ref|ZP_08132777.1| transcription-repair coupling factor [Kingella denitrificans ATCC
33394]
gi|324982729|gb|EGC18355.1| transcription-repair coupling factor [Kingella denitrificans ATCC
33394]
Length = 1258
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 48/180 (26%), Gaps = 27/180 (15%)
Query: 2 TFQQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ ++K A G+ +V+ HG+G + + E + +
Sbjct: 569 SRRKKHAAVSDGSLRDLAEISIGDPVVHEEHGIGRYRGLVLM----GEDEMLQLEYAG-D 623
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L +PV + I S AL + A K +
Sbjct: 624 AQLYIPVSQLHLISRY--SGQAHENVALHKLGSGAWNKAKR-----------KAAEKARD 670
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
A + +L+ + E + + + AI + +L+
Sbjct: 671 TAAELLNLYAQRAAQSGHKFEINELD--YQAFADGFGYEETEDQAAAIAAVIKDLTQAKP 728
>gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
10507]
gi|225037050|gb|EEG47296.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
10507]
Length = 1044
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 53/167 (31%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+++V+ HG+G I++ EV + ++ I +D L + +
Sbjct: 364 KIQDFAELTVGDYVVHENHGLGIYRGIEKVEVDKVVKDYIKIE-YRDGSNLYILATQLDA 422
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ EA K + ++ ++ ++V+
Sbjct: 423 LQKYAGQEA------------KTPRLNKLGTQEWNRTKTRVKGAVKDIARDLVKLYATRQ 470
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y +++ M + + +AI + ++ S
Sbjct: 471 EKEGFVYGTDTVWQKEFEEM---FPYEETEDQIQAIEDTKRDMESTK 514
>gi|262370461|ref|ZP_06063787.1| transcription-repair coupling protein [Acinetobacter johnsonii
SH046]
gi|262314803|gb|EEY95844.1| transcription-repair coupling protein [Acinetobacter johnsonii
SH046]
Length = 1152
Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G +V+ +GVG + + EF + + + VPV I
Sbjct: 480 TELSMGAPVVHIDYGVGRYAGLVTLSIDDQDYEFLQLDYADA-AKVYVPVTNLHLISRYS 538
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + ++ WS K L I +V +L ++ +
Sbjct: 539 GGDPD--------LAPLHKLGTDAWS--------KAKRKALEQIHDVAAELLHIQARRQA 582
Query: 132 SYSERQLYES-ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + A ++ + AI ++
Sbjct: 583 KPGFGFELDQGQYMQFASGFAYEETLDQANAIEATLYDMQLAKP 626
>gi|148997952|ref|ZP_01825465.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP11-BS70]
gi|147755962|gb|EDK63005.1| transcription-repair coupling factor [Streptococcus pneumoniae
SP11-BS70]
Length = 1118
Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++V+ HG+G I+ E+ + + +V ++ + +PV + +
Sbjct: 437 ELEKGDYVVHHIHGIGQYLGIETIEIKEIHRD-YVSVQYQNGDQISIPVEQIHLLSKYIS 495
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S GKA + ++ K+ + ++++ +
Sbjct: 496 S------------DGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFA 543
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S + A + V + + +I I+ ++ +
Sbjct: 544 FSADDDDQDAFDDAF---PYVETDDQLRSIEEIKRDMQASQP 582
>gi|242279458|ref|YP_002991587.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
2638]
gi|242122352|gb|ACS80048.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
2638]
Length = 1149
Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 16/154 (10%)
Query: 21 VYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVER 80
V+ +G+ + V + ++ ++ F + L VPV + + K E
Sbjct: 493 VHRDYGLSRFGGLHHMNVGEVANDYLLLFF-DSEDKLYVPVDRLNLVQKYKGPE------ 545
Query: 81 ALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYE 140
G + + R + K E+V +Y +
Sbjct: 546 ------GSCPILDKLGGARWAKTREKARKAIEKIAGELVEMYAYRKIAKGYAYG---PLD 596
Query: 141 SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +AI + ++ S
Sbjct: 597 EMYWEFESTFGFEETPDQEKAIQDVFRDMESPEP 630
>gi|332885155|gb|EGK05406.1| hypothetical protein HMPREF9456_02607 [Dysgonomonas mossii DSM
22836]
Length = 1108
Score = 82.5 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q F+ G++IV+ HGVG + ++ G E + + + V + I
Sbjct: 421 ELQQFQIGDYIVHIDHGVGQFGGLVRSDMNGKMQE-LIKLIYLNNDVIFVSLHSLHKISK 479
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ E G+ + + + K + ++++ + +
Sbjct: 480 YRGKE------------GEPPRINKLGTGAWNKIKEKTKNKVKDIARDLIQLYAKRRQEE 527
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S++ + + + ++ + +A +++++ +
Sbjct: 528 GFSFAPDSFLQ---HELEASFIYEDTPDQVKATADVKLDMENSKP 569
>gi|167772425|ref|ZP_02444478.1| hypothetical protein ANACOL_03802 [Anaerotruncus colihominis DSM
17241]
gi|167665528|gb|EDS09658.1| hypothetical protein ANACOL_03802 [Anaerotruncus colihominis DSM
17241]
Length = 169
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 61/171 (35%), Gaps = 12/171 (7%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKE---QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F+ G+ I+Y GV + ++ + A ++ +A + PV +
Sbjct: 1 MFQEGDMIIYGNTGVCRVEQVGHPDHIKGADDSRLYYTLAPVYQAGVIYAPVDTP--VFT 58
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRR--AQEYDAKINSGDLIAIAEVVRDLHRTD- 126
R + E + + +R + Y A ++ + ++++ +H +
Sbjct: 59 RPILTRQAAEELIAKIPAIRAEIYNGRDQRVLSDCYRACFDTHRCETLVQLIKTVHSKNE 118
Query: 127 ----SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
S + +++ + A + + E A V I+ + I ++ S
Sbjct: 119 VCQKSGKTPAQLDQRYMKRAEDLLYGEFAVVLGIAREDVEKYITERIAQAS 169
>gi|28493149|ref|NP_787310.1| transcription-repair coupling factor [Tropheryma whipplei str.
Twist]
gi|28476189|gb|AAO44279.1| transcription-repair coupling factor [Tropheryma whipplei str.
Twist]
Length = 1291
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/179 (9%), Positives = 56/179 (31%), Gaps = 23/179 (12%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQ--EVAGMKLEFFVIAFDKDK----M 55
+R +++V+ HG+ + + + + E+ ++ + K++
Sbjct: 603 PRISRRAIDPINLAIDDYVVHEIHGIARFKGMCSRRPKHDAPEQEYLILEYAKNRLGVAD 662
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L +P + I S+ + + RA++
Sbjct: 663 KLYIPTDQLSMISKYIGSDR-------PTLSRIGGSDWALTKSRARK-------AISSIA 708
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++V+ R ++S +++ E + + + I ++ ++ +
Sbjct: 709 LDLVKLYSRRSITKGYAFSPDTPFQT---HFENEFLYTETRDQEKTIVAVKADMENSKP 764
>gi|283796045|ref|ZP_06345198.1| transcriptional regulator, CarD family [Clostridium sp. M62/1]
gi|291076255|gb|EFE13619.1| transcriptional regulator, CarD family [Clostridium sp. M62/1]
gi|295092338|emb|CBK78445.1| CarD-like/TRCF domain. [Clostridium cf. saccharolyticum K10]
Length = 169
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 62/169 (36%), Gaps = 7/169 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
F+ GE+I+Y + G + + K E + + +D + MR
Sbjct: 1 MFQEGEYIIYGSSGACKVERVGILPYGSGKEERLCYTLIPCRDPGSTIFTPVDNQKVLMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ + +R + + +R +EY + + D + +++ ++ +
Sbjct: 61 PVMTREEAMDLIGQMREISPLWIQNERKREEEYREAVRTCDGRELVRIIKTIYLRRRKRM 120
Query: 131 -----KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + ++ A + + E+A + + + IE + + +
Sbjct: 121 SEGKKITAADSRYFKLAEDNLYGELAVSLDLERDKVKDFIEEKIGAGEA 169
>gi|300870408|ref|YP_003785279.1| transcription-repair coupling factor [Brachyspira pilosicoli
95/1000]
gi|300688107|gb|ADK30778.1| transcription-repair coupling factor [Brachyspira pilosicoli
95/1000]
Length = 1196
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G++ V+ +G+G + + G + ++ + + K L +PV + +
Sbjct: 489 DLNIGDYAVHVNYGIGKYLGLTRKLSNGKEKDYLTLEYAKGD-KLYIPVEQMNFVQKYIS 547
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G A KI S RDL + +
Sbjct: 548 GSGEEPK--LTALGGSA--------------WDKIKSKAREDALATARDLIKIYAIRSNV 591
Query: 133 YSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ ++ + AIN I+ ++ S
Sbjct: 592 HGNIYGPDTQWQDDFEASFNYEETVDQLRAINDIKSDMESDK 633
>gi|281425314|ref|ZP_06256227.1| hypothetical protein HMPREF0971_02286 [Prevotella oris F0302]
gi|281400607|gb|EFB31438.1| transcription-repair coupling factor [Prevotella oris F0302]
Length = 1139
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 51/165 (30%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + AG + + + + V + I
Sbjct: 446 ELQEMEPGDFIVHVDFGIGKFGGLVRV-PAGNSYQEMIRIIYQHNDKVDVSIHSLYKISK 504
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ G+ T+ + K ++++ + +
Sbjct: 505 YRRADT-----------GEPPRLSTLGTGAWDRLKEKTKKRIKDIARDLIKLYAQRRHEK 553
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S+
Sbjct: 554 GYAFSGDSYLQ---HELEASFLYEDTPDQSKATQDVKADMESQRP 595
>gi|222148735|ref|YP_002549692.1| transcription-repair coupling factor [Agrobacterium vitis S4]
gi|221735721|gb|ACM36684.1| transcription-repair coupling factor [Agrobacterium vitis S4]
Length = 1175
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G G +V+ HG+G ++ + AG + + + + L +PV +
Sbjct: 502 SEVAGLDEGSIVVHAEHGIGRFIGLRTIQAAGSQHACLELQYAD-EAKLFLPVENIELLS 560
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ E L + G A Q AK+ L ++R +
Sbjct: 561 RY---GSEGSEAQLDKLGGGA----------WQMRKAKLKKRLLDMAGGLIRIAAERMMR 607
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + AI + +L++
Sbjct: 608 SAPVLATTEGF---YDEFAARFPYEETEDQMNAIEAVRGDLAAGRP 650
>gi|299141509|ref|ZP_07034645.1| transcription-repair coupling factor [Prevotella oris C735]
gi|298576845|gb|EFI48715.1| transcription-repair coupling factor [Prevotella oris C735]
Length = 1139
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 51/165 (30%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + AG + + + + V + I
Sbjct: 446 ELQEMEPGDFIVHVDFGIGKFGGLVRV-PAGNSYQEMIRIIYQHNDKVDVSIHSLYKISK 504
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ G+ T+ + K ++++ + +
Sbjct: 505 YRRADT-----------GEPPRLSTLGTGAWDRLKEKTKKRIKDIARDLIKLYAQRRHEK 553
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S+
Sbjct: 554 GYAFSGDSYLQ---HELEASFLYEDTPDQSKATQDVKADMESQRP 595
>gi|254519000|ref|ZP_05131056.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226912749|gb|EEH97950.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 163
Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 63/159 (39%), Gaps = 5/159 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F+ G+ I+Y HG+ + +I E+ ++ +K +++++ + + M +L
Sbjct: 1 MFKKGDLILYSVHGICKVDDICEKTISHIKKQYYILHPINETNLSISTPVDNDKVAMLEL 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT-----DS 127
+ L+L + + R++ Y+ I + I ++ L RT ++
Sbjct: 61 LTKEEAQETLELFKNPGINWIEIDRERSEVYNEIIKQWNRREIVKIANTLMRTKIDLENN 120
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166
+ ++++ + + E+A + E +
Sbjct: 121 GKKFHEKDKKMLLDIQSILFSELAFSLDTTSEEIAKTVN 159
>gi|310657789|ref|YP_003935510.1| transcription-repair coupling factor [Clostridium sticklandii DSM
519]
gi|308824567|emb|CBH20605.1| transcription-repair coupling factor [Clostridium sticklandii]
Length = 1130
Score = 82.1 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 55/162 (33%), Gaps = 15/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+H+V+ +GVG I+ ++ ++ ++ I L VP+ + +
Sbjct: 490 DLKAGDHVVHETYGVGKFVGIESKKFDDIRKDYIKI-VYSAGDALYVPLSQMDKVQKYIG 548
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ A + KL + ++ AK +++ +
Sbjct: 549 TGAGDAVKLNKL-----------GTSEWKKTKAKAKKAVDEIAQDLIDLYAERRDARGYA 597
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++E ++ ++ + AI ++ ++ +
Sbjct: 598 FTEDTPWQ---KEFESLFPYEETVDQINAIEDVKKDMQNIKP 636
>gi|212702598|ref|ZP_03310726.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098]
gi|212674039|gb|EEB34522.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098]
Length = 1192
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 46/163 (28%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ +G+G + G +F ++ + L VPV + I ++
Sbjct: 519 DDLKAGDLLVHRDYGIGRFAGLHHLVQGGQGNDFLLVEYSGQD-RLYVPVDRLGLI--QR 575
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
E AL + G + K+ A++V
Sbjct: 576 FKGGEGAEPALDRLGGASWSSG----------KEKVRKAIEKIAADLVEMYAYRKVAKGF 625
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + + + AI + ++
Sbjct: 626 RY---DPPGELYHEFEATFGFEETPDQARAIEDVLADMDKSEP 665
>gi|333029973|ref|ZP_08458034.1| transcription-repair coupling factor [Bacteroides coprosuis DSM
18011]
gi|332740570|gb|EGJ71052.1| transcription-repair coupling factor [Bacteroides coprosuis DSM
18011]
Length = 1123
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
F+ G++IV+ HG+G + E + +++ + V + +
Sbjct: 432 EINEFKIGDYIVHTDHGIGRFEGLMRIPNGDTTQEVIKL-VYQNEDVVFVSIHSLHKVSK 490
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K E G+A + + Q+ K ++++ + +
Sbjct: 491 YKGKE------------GQAPRLNKLGTGAWQKIKDKTKDKIKDIARDLIKLYAKRREEK 538
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + ++ + ++ ++ ++ S
Sbjct: 539 GFAFSPDSFLQ---KELEASFIYEDTPDQSKSTQDVKQDMESNMP 580
>gi|282882197|ref|ZP_06290836.1| transcription-repair coupling factor [Peptoniphilus lacrimalis
315-B]
gi|281297962|gb|EFA90419.1| transcription-repair coupling factor [Peptoniphilus lacrimalis
315-B]
Length = 1157
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ +HG+G ++ EV+G+K ++ VI L +P+ I
Sbjct: 492 EDLHVGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIK-YFGDDKLFLPIESLDLIYKYT 550
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
E KA + S + K ++++ +S+
Sbjct: 551 GDEK------------KAPKLNKLNSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGF 598
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ ++ + + + I+ ++
Sbjct: 599 KFSKDSSFQR---EFEDAFIYEETDGQLLSSEEIKKDMEEAHP 638
>gi|28572737|ref|NP_789517.1| transcription-repair coupling factor [Tropheryma whipplei TW08/27]
gi|28410870|emb|CAD67255.1| transcription-repair coupling factor [Tropheryma whipplei TW08/27]
Length = 1248
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 17/179 (9%), Positives = 56/179 (31%), Gaps = 23/179 (12%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQ--EVAGMKLEFFVIAFDKDK----M 55
+R +++V+ HG+ + + + + E+ ++ + K++
Sbjct: 560 PRISRRAIDPINLAIDDYVVHEIHGIARFKGMCSRRPKHDAPEQEYLILEYAKNRLGVAD 619
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
L +P + I S+ + + RA++
Sbjct: 620 KLYIPTDQLSMISKYIGSDR-------PTLSRIGGSDWALTKSRARK-------AISSIA 665
Query: 116 AEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++V+ R ++S +++ E + + + I ++ ++ +
Sbjct: 666 LDLVKLYSRRSITKGYAFSPDTPFQT---HFENEFLYTETRDQEKTIVAVKADMENSKP 721
>gi|217076282|ref|YP_002333998.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
gi|217036135|gb|ACJ74657.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
Length = 909
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 20/164 (12%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F G+ +V+ +G+ + ++ EF ++ F + L VP + +
Sbjct: 267 DEFNIGDIVVHKEYGIAKFVGTTKITQKDLEREFLILQF--NDSKLFVPTDRLDLVQKYI 324
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + +K I ++V+++ R ++ +
Sbjct: 325 GTNENVTLD-----------------NLKKNNWSKRVKKAKSQIEKIVKEILRINALRKN 367
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +S + + + + +AI + +LSS+ +
Sbjct: 368 TKGISLPGDSELEKEFAKTFPHIETQDQLKAIQEVSEDLSSEKN 411
>gi|167041424|gb|ABZ06176.1| putative TRCF domain protein [uncultured marine microorganism
HF4000_006O13]
Length = 1147
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G +V+ HG+G + V + EF I + + L VPV +
Sbjct: 475 QDLKDLQVGSLVVHGEHGIGKYKGLSVMMVDNVNSEFLTIEYALGDL-LHVPVTLMDQVS 533
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ E L + K+ +V +L +
Sbjct: 534 --RFIGQSSDESILSHLGS--------------NQWKKLCKKTKKQAYDVAAELLEIYAN 577
Query: 129 PEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + V + + + I + ++++
Sbjct: 578 RAIAVGKSHVANQKDYENFCDGFEYVLTQDQAKVIEDVLDDMAASK 623
>gi|167041981|gb|ABZ06718.1| putative TRCF domain protein [uncultured marine microorganism
HF4000_141E02]
Length = 1150
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G +V+ HG+G + V + EF I + + L VPV +
Sbjct: 478 QDLKDLQVGSLVVHGEHGIGKYKGLSVMMVDNVNSEFLTIEYALGDL-LHVPVTLMDQVS 536
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ E L + K+ +V +L +
Sbjct: 537 --RFIGQSSDESILSHLGS--------------NQWKKLCKKTKKQAYDVAAELLEIYAN 580
Query: 129 PEKSYSERQLY-ESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + V + + + I + ++++
Sbjct: 581 RAIAVGKSHVANQKDYENFCDGFEYVLTQDQAKVIEDVLDDMAASK 626
>gi|251772784|gb|EES53346.1| transcription-repair coupling factor [Leptospirillum
ferrodiazotrophum]
Length = 1145
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 18/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
R F G+++V+ G+G ++E V + EF VI + + V + +
Sbjct: 472 DRPTFADGDYVVHLHQGIGRFRGLQEVSVGANRGEFAVIEYLGGD-RFYLSVDQMDQLLP 530
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + + GK+ ++ S + ++ DL ++
Sbjct: 531 YQG--PEGSAPRIDRLGGKS--------------WSQTKSRVRKQVEKISADLVMLYARR 574
Query: 130 EKSYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ES L + + + EAI + ++ S +
Sbjct: 575 KAAEGFAFSPESILTREFDQSFPYDLTTDQEEAIQAVLSDMESPTP 620
>gi|74317674|ref|YP_315414.1| transcription-repair coupling factor [Thiobacillus denitrificans
ATCC 25259]
gi|74057169|gb|AAZ97609.1| transcription-repair coupling factor [Thiobacillus denitrificans
ATCC 25259]
Length = 1146
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 47/165 (28%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+ +V+ +GVG + ++ EF + + K L VPV I
Sbjct: 462 DLSELKPGDPVVHAQYGVGQYLGLATMDLGDGDTEFLQLEYAKGD-KLYVPVANLHLISR 520
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + + + ++ + AE++ ++
Sbjct: 521 YSGAS------------EGEVPLHRLGTDQWEKARRRAMQAARDTAAELLNLYALRAARE 568
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + AI + ++ S
Sbjct: 569 GHAFS---FSLHDYEAFAEGFGYEETPDQAAAIAAVMADMQSGKP 610
>gi|238922870|ref|YP_002936383.1| transcription-repair coupling factor [Eubacterium rectale ATCC
33656]
gi|238874542|gb|ACR74249.1| transcription-repair coupling factor [Eubacterium rectale ATCC
33656]
Length = 1177
Score = 81.8 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ ++ G+++V+ HG+G I++ EV ++ I + L +
Sbjct: 491 TYEGEKIQSFTDLSVGDYVVHENHGLGIYRGIEKLEVDKKVKDYIKIE-YQGGSNLYILA 549
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + + L + G + ++ ++V+
Sbjct: 550 TQLDMIQKY--AGKDARKPKLNKLGG----------QEWTRTKNRVRGAVKQIAGDLVKL 597
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + Q ++ E +++ + + + AI + ++ S
Sbjct: 598 YAQREQQNGYAFGEDTVWQREFEEL---FPFDETEDQILAIEATKTDMQSHK 646
>gi|317499346|ref|ZP_07957616.1| transcription-repair coupling factor [Lachnospiraceae bacterium
5_1_63FAA]
gi|316893381|gb|EFV15593.1| transcription-repair coupling factor [Lachnospiraceae bacterium
5_1_63FAA]
Length = 948
Score = 81.8 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 56/159 (35%), Gaps = 16/159 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
G+++V+ HGVG I++ G++ + ++ + L + I +
Sbjct: 505 NIGDYVVHEKHGVGIYRGIEKITTDGVEKD-YISIEYQGGDNLFILASALDQIAKY--AS 561
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
A+ + L + G ++ ++ E+V+ ++ Y
Sbjct: 562 ANARKPKLHKLGGNE----------WKKTKTRVKGQVKDIAEELVQLYALRQAKEGYVYD 611
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +++ + + + AI+ + ++ SK
Sbjct: 612 KDTVWQKEFEEL---FPYDETQDQLNAIDDTKRDMESKK 647
>gi|332295132|ref|YP_004437055.1| transcription-repair coupling factor [Thermodesulfobium narugense
DSM 14796]
gi|332178235|gb|AEE13924.1| transcription-repair coupling factor [Thermodesulfobium narugense
DSM 14796]
Length = 1111
Score = 81.8 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 15/172 (8%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ K + Q + + +V+ HG+G +K ++ E+ I KD L +PV
Sbjct: 449 TRHKNISSLQELQYNDLVVHTDHGIGRFIGLKLMNFTKIQREYAQI-LYKDGDILYIPVE 507
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + + + T +RA+++ KI E+V
Sbjct: 508 EFTRLSKYIGPDDAE-------LSSLRSNDWTSKKKRAKDFAEKI-------AHEIVFIE 553
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ YS + + + + AI + +++S
Sbjct: 554 ASRRNVQRPIYSNSKNPTIEELELKESFGYEETPDQERAIEDVFIDMSKPYP 605
>gi|302039582|ref|YP_003799904.1| transcription-repair-coupling factor [Candidatus Nitrospira
defluvii]
gi|300607646|emb|CBK43979.1| Transcription-repair-coupling factor [Candidatus Nitrospira
defluvii]
Length = 1157
Score = 81.8 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 16/166 (9%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + G+++V+ +G+ ++ V +F V+ F L VP+ + +
Sbjct: 477 SSLEDLNIGDYVVHMQYGIAKYQGLRRLSVQDFDSDFLVLEFAGTD-KLYVPLDRLSQVQ 535
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
++AH L + G + + A++ E+V +
Sbjct: 536 RYAGADAHVPR--LDRLGGTS----------WAKTTARVKKDIEEMAHELVDLYANRELV 583
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SY + + + + + AI I +L+S
Sbjct: 584 HRTSYGKDSML---YHEFEAAFEYEETPDQRRAIEDIAKDLASTKP 626
>gi|33240450|ref|NP_875392.1| transcriptional-repair coupling factor [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33237978|gb|AAQ00045.1| Transcription-repair coupling factor [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 1170
Score = 81.8 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 16/166 (9%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
++G+++V+ HGVG +I++ V ++ ++ + L+V + +G
Sbjct: 482 VNPNKLKSGDYVVHRNHGVGKFLKIEKFIVNNESRDYLLVQY--SDGTLRVAADQLSSLG 539
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ S K+ + + + ++++ +
Sbjct: 540 RYRNSS------------DKSPRINKLGGNTWTKAKERAKKSISRVAIDLIKLYAERSNS 587
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+ + ++ + + + +A++ I+ ++
Sbjct: 588 QGFSFPKDGPWQR---ELEEAFPYEATPDQIKAVSEIKSDMEKSFP 630
>gi|284928643|ref|YP_003421165.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
gi|284809102|gb|ADB94807.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
Length = 1151
Score = 81.4 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 24/175 (13%)
Query: 3 FQQKRDAMR---QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+++ +A + Q +G+H+V+ +HG+G ++ E+ V+ + L+V
Sbjct: 474 KRRRSNAKKVNLQKLNSGDHVVHKSHGIGKFLRLENL----SNREYLVVQY--SDGVLRV 527
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P ++ S L + GK + KI ++
Sbjct: 528 PADSLDNLLRY--SCTDSTPPKLHKMTGKD----------WGKLKQKIRKNIKKLAFNLL 575
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ SY L++ + + + +AI ++++L S
Sbjct: 576 HLYAERAQKKGYSYPADSLWQ---QELEDSFPYQATPDQVQAIREVKIDLESNRP 627
>gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
Length = 1180
Score = 81.4 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 15/175 (8%), Positives = 53/175 (30%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R + G+ +V+ HG+G ++++ ++G ++ V+ + L+V
Sbjct: 473 RRRKAASRTVDPNKMQQGDFVVHRNHGIGRFKKLEKLAISGEVRDYLVVQY--SDGILRV 530
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + M + + ++V
Sbjct: 531 AADQLGSLGR------------FRANSDTPPQLSKMGGSAWVKAKERATKAVRKVALDLV 578
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ ++ + + + +A ++ ++
Sbjct: 579 KLYAERHQAAGFAFPIDGPWQV---ELEDSFPYEPTSDQLKATVDVKRDMEKPEP 630
>gi|291550022|emb|CBL26284.1| transcription-repair coupling factor [Ruminococcus torques L2-14]
Length = 1118
Score = 81.4 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ K+ + G+++V+ HG+G I++ EV + ++ I++ + L +P
Sbjct: 431 TYEGKKIQEFAELKPGDYVVHENHGLGIYQGIEKVEVDAVTRDYMKISYADGGI-LYIPA 489
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + K + + + ++ ++ + ++V+
Sbjct: 490 TQMDLIQKYAGA------------DAKPPKLNKLGTPQWKKTKGQVKKAVQLIAKDLVKL 537
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y +++ M + + AI + ++ S
Sbjct: 538 YATRQQTEGYVYGPDTVWQREFEEMFP---FEETEDQLRAIEDTKKDMESTK 586
>gi|57167968|ref|ZP_00367107.1| transcription-repair coupling factor [Campylobacter coli RM2228]
gi|57020342|gb|EAL57011.1| transcription-repair coupling factor [Campylobacter coli RM2228]
Length = 978
Score = 81.4 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 60/170 (35%), Gaps = 16/170 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
++K + + + G+ IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 334 KRKANLIIDELKIGDFIVHEDYGVGKFLGLEMISISGAKKEF-VAIEYQNSDKLLLPVEN 392
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I + + L+ ++ R + L+AIA + +
Sbjct: 393 LYMIDKYLGASGG-----IPLLDRLGKMTFIRLKERLKT--------KLLAIASEIVIMA 439
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + A V + + + +A I + +
Sbjct: 440 AKRALIKPKEIKIDYADQAY--FVSKAGFSYTQDQNKACEEILNDFENGK 487
>gi|189485430|ref|YP_001956371.1| transcription-repair coupling factor Mfd [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|170287389|dbj|BAG13910.1| transcription-repair coupling factor Mfd [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 1048
Score = 81.4 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 16/158 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+++V+ +G+G +K E+ K+ L +P + I
Sbjct: 383 GDYVVHEKYGIGRYIGLKTISRENSISEYL-CIEYKNGDKLYIPPEQIKTIKKYIGV--- 438
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
E + + RA+E AK E+++ + K +
Sbjct: 439 --EGVKPKLYSMDTLAWERVKSRAREAAAKF-------AEELLKLYVQRSLIKRKPFGPG 489
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+E + + + +AI I+ +
Sbjct: 490 TAWE---KELENTFPYDETPGQLKAIEDIKNDFLKPYP 524
>gi|116070624|ref|ZP_01467893.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
gi|116066029|gb|EAU71786.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
Length = 1192
Score = 81.4 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 15/175 (8%), Positives = 53/175 (30%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G + + ++G ++ V+ + L+V
Sbjct: 485 RRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMDKLALSGDVRDYLVVQYA--DGILRV 542
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + M + + ++V
Sbjct: 543 AADQLGSLGRYRATS------------ESPPQLSRMGGAAWTKAKDRAKKAVRKVALDLV 590
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ +++ + + + ++ ++ ++
Sbjct: 591 KLYAERQQSNGFAFPPDGPWQT---ELEESFPYEPTPDQLKSTTDVKRDMERAEP 642
>gi|78184749|ref|YP_377184.1| transcription-repair coupling factor [Synechococcus sp. CC9902]
gi|78169043|gb|ABB26140.1| Transcription-repair coupling factor [Synechococcus sp. CC9902]
Length = 1192
Score = 81.4 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 15/175 (8%), Positives = 53/175 (30%), Gaps = 20/175 (11%)
Query: 3 FQQK---RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++K R R G+ +V+ HG+G + + ++G ++ V+ + L+V
Sbjct: 485 RRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMDKLALSGDVRDYLVVQYA--DGILRV 542
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ +G + + M + + ++V
Sbjct: 543 AADQLGSLGRYRATS------------ESPPQLSRMGGAAWTKAKDRAKKAVRKVALDLV 590
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ +++ + + + ++ ++ ++
Sbjct: 591 KLYAERQQSNGFAFPPDGPWQT---ELEESFPYEPTPDQLKSTTDVKRDMERAEP 642
>gi|317133014|ref|YP_004092328.1| transcription-repair coupling factor [Ethanoligenens harbinense
YUAN-3]
gi|315470993|gb|ADU27597.1| transcription-repair coupling factor [Ethanoligenens harbinense
YUAN-3]
Length = 1179
Score = 81.4 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 58/179 (32%), Gaps = 24/179 (13%)
Query: 4 QQKRDA-------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMC 56
+++++ G+++V+ AHG+G I + V G+ ++ I +
Sbjct: 474 RKRKNKRAGERIRSLAELTPGDYVVHAAHGIGVYEGIHKLTVQGVVKDYIKIRYAGRD-T 532
Query: 57 LKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA 116
L VPV + + + R K+ + K + A+
Sbjct: 533 LYVPVTQLDLVSKYIGTHEDGHLRLNKMGGTE---------------WQKAKNRVRAAVK 577
Query: 117 EVVRDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ ++L + ++ + A+ + + + I+ ++
Sbjct: 578 DMAKELIALYAARQQVKGITFQPDDAMQREFEDRFEFEETDDQLRCVEEIKGDMQRAFP 636
>gi|229829772|ref|ZP_04455841.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
14600]
gi|229791761|gb|EEP27875.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
14600]
Length = 1185
Score = 81.4 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 17/161 (10%), Positives = 53/161 (32%), Gaps = 16/161 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+++++ HG+G +++ EV + ++ I + + L + + +
Sbjct: 509 QLHEGDYVIHENHGLGIYRGMEKIEVDQVTKDYIKIEYADSGI-LYILASQMDLLQKYAG 567
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++A ++ S+ +++ E+V +
Sbjct: 568 ADARR------------PRLNSLGSQEWSRTKSRVKRAVESVARELVELYAVRQEDKGYA 615
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y +++ + + EAI ++ ++ S
Sbjct: 616 YGPDTVWQR---EFEEAFPYEETEGQLEAIEAVKKDMESPK 653
>gi|169335546|ref|ZP_02862739.1| hypothetical protein ANASTE_01961 [Anaerofustis stercorihominis DSM
17244]
gi|169258284|gb|EDS72250.1| hypothetical protein ANASTE_01961 [Anaerofustis stercorihominis DSM
17244]
Length = 1150
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 44/163 (26%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+++V+ +G+G + E G+ ++ I F + L V K +
Sbjct: 482 SEITKGDYVVHETYGIGRYLGMVNMEAGGLYNDYLEIEFAGND-KLYVIANKMNLVSKYI 540
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + S+ + K E + +
Sbjct: 541 GSS------------DAPPKLNKLGSQVWENTKNKTRKAVKELAKEYITLYAKRREIKGF 588
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S ++ + + + ++ ++
Sbjct: 589 AFSADTPWQ---KEFEDNFGYELTEDQERCVREVKEDMEKPYP 628
>gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
gi|167712259|gb|EDS22838.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
Length = 1173
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 56/159 (35%), Gaps = 16/159 (10%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
G+++V+ HGVG I++ G++ + ++ + L + I +
Sbjct: 505 NIGDYVVHEKHGVGIYRGIEKITTDGVEKD-YISIEYQGGDNLFILASALDQIAKY--AS 561
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
A+ + L + G ++ ++ E+V+ ++ Y
Sbjct: 562 ANARKPKLHKLGGNE----------WKKTKTRVKGQVKDIAEELVQLYALRQAKEGYVYD 611
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +++ + + + AI+ + ++ SK
Sbjct: 612 KDTVWQKEFEEL---FPYDETQDQLNAIDDTKRDMESKK 647
>gi|224533484|ref|ZP_03674074.1| transcription-repair coupling factor [Borrelia burgdorferi
CA-11.2a]
gi|224513364|gb|EEF83725.1| transcription-repair coupling factor [Borrelia burgdorferi
CA-11.2a]
Length = 1125
Score = 81.0 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ ++ I + K L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKDYIEIEYAK-GEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|219684175|ref|ZP_03539119.1| transcription-repair coupling factor [Borrelia garinii PBr]
gi|219672164|gb|EED29217.1| transcription-repair coupling factor [Borrelia garinii PBr]
Length = 1124
Score = 81.0 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFIEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSNPKNIK------------LDKISSKTWIKNKANAKKRIDEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E ++ + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETLDQITAIKEIKEDMMS 600
>gi|253576632|ref|ZP_04853960.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251844046|gb|EES72066.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 167
Score = 81.0 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 5/160 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+ I Y HGV I E+ + +AG+ ++ + ++ + ++KL
Sbjct: 1 MFDKGDLISYSVHGVCRIDEVCVKSLAGVSKTYYELHPLSNETLKISIPVDRAPLQLQKL 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ---- 128
+ R Y A + +GD IA+V L R
Sbjct: 61 MGPEEAMALIDSFMAPGIPWIDNNHERHHNYSAIVKTGDREGIAKVANTLMRRKQWSEQN 120
Query: 129 -PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ + QL N E+A V + + + ++
Sbjct: 121 HKKLGNQDNQLLLGIQNTSFNEMAIVLKTTYDDVLQAVQE 160
>gi|162450905|ref|YP_001613272.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce
56']
gi|161161487|emb|CAN92792.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce
56']
Length = 1271
Score = 81.0 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 19/166 (11%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+H+V+ HG+G + ++V ++ + L +PV + I
Sbjct: 596 DLRNLGVGDHVVHVEHGIGRYLGLVHKQVGSTTVD-LIAVEYAGGDKLYLPVYRLNQI-- 652
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+K S + + G+ AK + ++ ++ +L R ++
Sbjct: 653 QKFSGGEGTPKL-DRLGGQT--------------FAKTKARVEKSVRKMADELLRLYAER 697
Query: 130 EKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +E + + + AI + +L S
Sbjct: 698 RAATAEPVPPPDDDYRAFEATFPFDETPDQARAITEVTADLESGRP 743
>gi|323697782|ref|ZP_08109694.1| transcription-repair coupling factor [Desulfovibrio sp. ND132]
gi|323457714|gb|EGB13579.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
ND132]
Length = 1161
Score = 81.0 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 46/163 (28%), Gaps = 15/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ +G+ + + ++ ++ F + L +PV + + R
Sbjct: 485 DDLTEGDLLVHRDYGLSQFGGLHHMSIGEGANDYLLLYFSGED-KLYLPVDRLNLV-ERF 542
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+L + G R + AK+ E+V
Sbjct: 543 KGPEGAKAPSLDKLGG----------SRWAKTTAKVRKAIEKIALELVEMYAFRRVAKGY 592
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y + + + +A+N + ++
Sbjct: 593 GYG---PLDEMYAEFEATFGFEETPDQEKAVNDVFRDMEKAEP 632
>gi|157363476|ref|YP_001470243.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga
lettingae TMO]
gi|157314080|gb|ABV33179.1| DEAD/DEAH box helicase domain protein [Thermotoga lettingae TMO]
Length = 939
Score = 81.0 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 22/177 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T Q+ RD + GE +V+ +G+G +K+ E+FV+ + + +
Sbjct: 276 TSQKSRDQIPIFDEEELIEGEFVVHRDYGIGVYDGVKKISNPLGTREYFVLRY--EDSTV 333
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VPV + I + R+ W +R ++ + E
Sbjct: 334 YVPVERIHKIHKYIGDTRNVR---------IDRIHSGNWKKR----IERVKRNLREKVEE 380
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++R S E R + + AI + +L++
Sbjct: 381 LIRIYDTRQKISGLSLPGDPELE---KRFAEFFPYAETDDQMTAIEEVLSDLANDKP 434
>gi|153870816|ref|ZP_02000135.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS]
gi|152072718|gb|EDN69865.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS]
Length = 668
Score = 81.0 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 16/159 (10%)
Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G +V+ HGVG + V ++ EF + + K L VPV I + +
Sbjct: 3 VGAPVVHEEHGVGRYQGLMTLTVGEIEAEFLQLEYAKSD-KLYVPVASLHFISL--FTGM 59
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
L + E + + +A + D++ + + +
Sbjct: 60 DPEHAPLHRLGSAQW-----------EKAKRKAAKKATDVAAELLDIYAQRAARQGHQFQ 108
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + + + EAI + ++ S
Sbjct: 109 LEPLE--YQAFAQAFPFEETPDQQEAIQGVVNDMLSTQP 145
>gi|298207099|ref|YP_003715278.1| transcription-repair coupling factor [Croceibacter atlanticus
HTCC2559]
gi|83849733|gb|EAP87601.1| transcription-repair coupling factor [Croceibacter atlanticus
HTCC2559]
Length = 1126
Score = 81.0 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 18/174 (10%), Positives = 57/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G K E + D+ L +
Sbjct: 421 AKKQAITLKELTNLTVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKL-IYGDRDILYLS 479
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I G+A + S+ ++ K S +++
Sbjct: 480 IHSLHKITKYNG------------KDGQAPKVYKLGSQAWKKLKQKTKSKVKEIAFNLIK 527
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ + + ++ + A ++ ++ ++
Sbjct: 528 LYAKRRLEKGFAFGPDTTMQL---ELESSFIYEDTPDQSSATEDVKKDMENERP 578
>gi|87311618|ref|ZP_01093735.1| transcription-repair coupling factor [Blastopirellula marina DSM
3645]
gi|87285621|gb|EAQ77538.1| transcription-repair coupling factor [Blastopirellula marina DSM
3645]
Length = 1077
Score = 80.6 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 18/175 (10%)
Query: 2 TFQQ--KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
++ K R G+ +V+ AHG+G +K+ E E I F + V
Sbjct: 406 ATRKLGKVIDSFLDLRKGDLVVHLAHGIGRYRGLKKIEKQRQVEEHLEIEFHG-GTKVYV 464
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P K + A ++ W ++ + + ++ E++
Sbjct: 465 PASKVELVQKYVGGSKSRPPLA--------KIGGVTWQKQKKAVEQAVH----DLAGELL 512
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+P ++S L++ + + + AI I+ ++
Sbjct: 513 EVQAMRRSRPGIAFSADTLWQREFDL---SFPYEETTDQLTAIGNIKFDMEQPRP 564
>gi|227487825|ref|ZP_03918141.1| transcription-repair coupling factor [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227092152|gb|EEI27464.1| transcription-repair coupling factor [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 1218
Score = 80.6 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 26/175 (14%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFD-----KDKMCLKV 59
G+++V+ HG+G ++ E+EV + E+ V+ + L V
Sbjct: 497 VDPLALTAGDYVVHETHGIGRFVKMTEREVRTGDDTSRREYIVLEYAPSRRGGPPDQLYV 556
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P+ + V G+ M ++ K S AE+V
Sbjct: 557 PMDSLDLLSKY--------------VGGEKPTVSKMGGADWKKTKKKARSAVKEIAAELV 602
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + P +++ +++ + V + + AI+ ++ ++
Sbjct: 603 DLYAKRRAAPGHAFAPDSPWQAEME---DNFPYVETEDQMLAIDAVKHDMEQPVP 654
>gi|225570402|ref|ZP_03779427.1| hypothetical protein CLOHYLEM_06502 [Clostridium hylemonae DSM
15053]
gi|225160773|gb|EEG73392.1| hypothetical protein CLOHYLEM_06502 [Clostridium hylemonae DSM
15053]
Length = 168
Score = 80.6 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 18/165 (10%), Positives = 58/165 (35%), Gaps = 6/165 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ + +VY V I +I + ++ + + V + MR +
Sbjct: 1 MYKVNDVVVYGCSKVCFIKKIGTPDFMSKPQNYYWLQPVG-DTTTMLYVKTEHEDKMRSI 59
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTDS 127
+ ++ + + + R +EY + S D ++ + + +
Sbjct: 60 LTKGQADELMRELPEMEEMYDSSNKVRDREYIQVMKSRDCGEWLKMWKGITVEKMRKEQD 119
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ S+ + + + E +AV ++ + ++ + +L ++
Sbjct: 120 GKSLNASDESNLKRVQDCISSEFSAVFQTTKDKIVSRMRHSLGAE 164
>gi|327399449|ref|YP_004340318.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
gi|327182078|gb|AEA34259.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
Length = 1032
Score = 80.6 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 20/171 (11%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
++ R F G+ IV+ +G+ +K+ ++ + +FF + F + + VPV
Sbjct: 374 KRFRKPKNVEFEIGDRIVHKKYGIAQFNGLKKIKIEDKQEDFFELEF-DEGDKVYVPVYN 432
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
+ + S+ ++ S + Q I + E+V
Sbjct: 433 SDALLAYHGSDG----------------LSSLRSNKWQRNQESIKKSIKKILTELVNTYA 476
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ K Y + L E + + +AI+ ++ ++S
Sbjct: 477 KRQLVKRKPY-DIDLLEI--KEFEAMFEYDETPDQLKAISDVKDDMSKDVP 524
>gi|303237011|ref|ZP_07323583.1| transcription-repair coupling factor [Prevotella disiens
FB035-09AN]
gi|302482791|gb|EFL45814.1| transcription-repair coupling factor [Prevotella disiens
FB035-09AN]
Length = 1194
Score = 80.6 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 15/165 (9%), Positives = 50/165 (30%), Gaps = 14/165 (8%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ +V+ G+G + AG + + + + V + I
Sbjct: 504 ELQEMEPGDFLVHVDFGIGKFAGLVRV-PAGESYQEMIRLVYQHNDIVDVSIHSLYKISK 562
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ +++ L ++ A K ++++ + +
Sbjct: 563 YRRADSGDAAPRLSVLGSGA----------WDRLKEKAKKRIKDIARDLIKLYAKRRHEK 612
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 613 GFAFSPDSYLQ---HELEASFLYEDTPDQLKATQELKQDMESARP 654
>gi|227542464|ref|ZP_03972513.1| transcription-repair coupling factor [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181662|gb|EEI62634.1| transcription-repair coupling factor [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 1218
Score = 80.6 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 26/175 (14%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFD-----KDKMCLKV 59
G+++V+ HG+G ++ E+EV + E+ V+ + L V
Sbjct: 497 VDPLALTAGDYVVHETHGIGRFVKMTEREVRTGDDTSRREYIVLEYAPSRRGGPPDQLYV 556
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
P+ + V G+ M ++ K S AE+V
Sbjct: 557 PMDSLDLLSKY--------------VGGEKPTVSKMGGADWKKTKKKARSAVKEIAAELV 602
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + P +++ +++ + V + + AI+ ++ ++
Sbjct: 603 DLYAKRRAAPGHAFAPDSPWQAEME---DNFPYVETEDQMLAIDAVKHDMEQPVP 654
>gi|89889977|ref|ZP_01201488.1| transcription-repair coupling factor [Flavobacteria bacterium
BBFL7]
gi|89518250|gb|EAS20906.1| transcription-repair coupling factor [Flavobacteria bacterium
BBFL7]
Length = 1112
Score = 80.6 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 57/174 (32%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G + E + ++ L V
Sbjct: 413 AKKQAITLKELNTLEIGDYVTHIDHGIGKFGGLQKIDVNGTQQEAIKL-VYGERDILYVS 471
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S ++ AK + ++++
Sbjct: 472 IHSLHKITRY------------SSKDGKKPKVYKLGSPAWKKLKAKTKTKVKQIAFDLIQ 519
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + N + ++ + A ++ ++ S
Sbjct: 520 LYAKRRAKKGFQFEPDGYLQ---NELEASFIYEDTPDQSAATADVKADMESDRP 570
>gi|325270511|ref|ZP_08137111.1| transcription-repair coupling factor [Prevotella multiformis DSM
16608]
gi|324987087|gb|EGC19070.1| transcription-repair coupling factor [Prevotella multiformis DSM
16608]
Length = 1182
Score = 80.6 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 48/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ +V+ G+G + AG + + + + V + I
Sbjct: 485 ELQEMEPGDFLVHVDFGIGRFAGLVRV-PAGDSYQEMIRLVYQHNDIVDVSIHSLYKISK 543
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + G+ + S K +++R R +
Sbjct: 544 YRRGDT-----------GEPPRLSVLGSGAWDRLKEKAKKRIKDIARDLIRLYARRRREK 592
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 593 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQELKQDMESARP 634
>gi|282878269|ref|ZP_06287065.1| transcription-repair coupling factor [Prevotella buccalis ATCC
35310]
gi|281299687|gb|EFA92060.1| transcription-repair coupling factor [Prevotella buccalis ATCC
35310]
Length = 1153
Score = 80.6 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 48/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + G + + + + V + I
Sbjct: 463 ELQEMEPGDFIVHVDFGIGKFGGLVRVPT-GNTYQEMIRIIYQRGDIVDVSIHALYKISK 521
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ S+ G+ T+ + + K ++++ +
Sbjct: 522 YRRSDT-----------GEPPRLSTLGTGAWERLKEKTKKRIKDIARDLIKLYAKRRHDK 570
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+S + + + ++ + +A ++ ++
Sbjct: 571 GFSFSADNYMQ---HELEASFLYEDTPDQVKATAEVKADMEKARP 612
>gi|225551744|ref|ZP_03772687.1| transcription-repair coupling factor [Borrelia sp. SV1]
gi|225371539|gb|EEH00966.1| transcription-repair coupling factor [Borrelia sp. SV1]
Length = 1125
Score = 80.6 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K G H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVGIEKNSHVVHINHGIGIFKQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + +AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYNETPDQIKAIKEIKEDMMS 600
>gi|221217955|ref|ZP_03589422.1| transcription-repair coupling factor [Borrelia burgdorferi 72a]
gi|221192261|gb|EEE18481.1| transcription-repair coupling factor [Borrelia burgdorferi 72a]
Length = 1125
Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|225549983|ref|ZP_03770944.1| transcription-repair coupling factor [Borrelia burgdorferi 118a]
gi|225369442|gb|EEG98894.1| transcription-repair coupling factor [Borrelia burgdorferi 118a]
Length = 1125
Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|253580889|ref|ZP_04858151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847731|gb|EES75699.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 1107
Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 15/167 (8%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G+ +V+ HG+G I++ EV + ++ I + L +P +
Sbjct: 434 RIQDFAELSVGDFVVHEKHGLGIYRGIEKVEVDRIVKDYIKIE-YRGGSNLYIPATQLDC 492
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ ++A + KL ++ + +K+ E+V
Sbjct: 493 LQKYSGADASKAPKLNKL-----------GTQEWNKTKSKVRGAVKNIAKELVELYAVRQ 541
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +++ M + + AI + ++ S
Sbjct: 542 EKEGYVCGPDTVWQREFEEM---FPYEETEDQLSAIEDAKRDMESTR 585
>gi|225548852|ref|ZP_03769829.1| transcription-repair coupling factor [Borrelia burgdorferi 94a]
gi|225370455|gb|EEG99891.1| transcription-repair coupling factor [Borrelia burgdorferi 94a]
Length = 1125
Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|226320379|ref|ZP_03795948.1| transcription-repair coupling factor [Borrelia burgdorferi 29805]
gi|226234242|gb|EEH32954.1| transcription-repair coupling factor [Borrelia burgdorferi 29805]
Length = 1125
Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|195941443|ref|ZP_03086825.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
80a]
Length = 1125
Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|306820709|ref|ZP_07454337.1| transcription-repair coupling factor [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551319|gb|EFM39282.1| transcription-repair coupling factor [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 701
Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/171 (12%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+ ++ + G+ +V+ +G+G I+++E +K ++ I+ KD + VP+ +
Sbjct: 55 KTEKINSFIELKIGDIVVHEVYGIGKFLGIEQKENNSVKKDYIKIS-YKDGDTIYVPISQ 113
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
+ + + V + S + ++ AK +V
Sbjct: 114 MDKVQRYIGNASDKVS------------LTKLGSSQWKKQKAKAKKAVEEIARYLVDLYA 161
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++Q ++S+ +++ A + + +I ++ ++ +
Sbjct: 162 QRENQKGYAFSKDTVWQR---EFESLFAFEETQDQIRSIKEVKKDMENIKP 209
>gi|167758784|ref|ZP_02430911.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
gi|167663524|gb|EDS07654.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
Length = 1114
Score = 80.6 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 58/168 (34%), Gaps = 16/168 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
++ + G+++V+ HG+G I++ EV + ++ I++ + L +P +
Sbjct: 433 RKIQSFAELKVGDYVVHENHGLGIYQGIEKIEVDKISKDYMKISYAQ-GGNLYIPATQLD 491
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I + K + ++ + ++ ++VR
Sbjct: 492 LIQKYASA------------DAKKPKLNRLGTQEWTKTKTRVRGAVREIAKDLVRLYAAR 539
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Q Y E +++ M + + AI ++ ++ S
Sbjct: 540 QEQEGYVYGEDTVWQREFEEMFP---FEETEDQLLAIEAVKQDMMSHK 584
>gi|255019853|ref|ZP_05291929.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC
51756]
gi|254970782|gb|EET28268.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC
51756]
Length = 1149
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/162 (10%), Positives = 47/162 (29%), Gaps = 15/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ + + +G+G ++ VA + +V+ + VP I
Sbjct: 477 ELQAGDAVTHEDYGIGRFRGLETPFVAAGDVNEYVVLEYAGGDLVYVPADHLDRIARYIG 536
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ E L + ++ K +R D + +
Sbjct: 537 NGVDEPE--LTRLGSRSWDKAKARARAKAV--------DAASELLDIYARRAARPGRAFP 586
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ V + + AI+ + +++
Sbjct: 587 PPDERYWD-----FVSRFPFEETPDQQAAIDAVIADMTRTQP 623
>gi|224532959|ref|ZP_03673567.1| transcription-repair coupling factor [Borrelia burgdorferi WI91-23]
gi|224512076|gb|EEF82469.1| transcription-repair coupling factor [Borrelia burgdorferi WI91-23]
Length = 1125
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|319956027|ref|YP_004167290.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
16511]
gi|319418431|gb|ADV45541.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
16511]
Length = 998
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 16/166 (9%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
++ + R GE++V+ HGVG I+++EV G EF V+ + + L VPV
Sbjct: 350 KRPSLVLDEMRPGEYVVHETHGVGIFKGIEKREVLGATREFVVV-QYQGEDTLLVPVENL 408
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I + R+ + + R + K+ + I + L +
Sbjct: 409 EVIDRYIADSG--------TLPALDRLGKASFKRLKGKVREKLFAIASQIINISAQRLLQ 460
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+ +E + + ++ + EAI I LS
Sbjct: 461 RGIPLKVDPAE-------HALFLSQAGFEHTEDQMEAIRQIMEELS 499
>gi|218249390|ref|YP_002375126.1| transcription-repair coupling factor [Borrelia burgdorferi ZS7]
gi|218164578|gb|ACK74639.1| transcription-repair coupling factor [Borrelia burgdorferi ZS7]
Length = 1125
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|291531663|emb|CBK97248.1| transcription-repair coupling factor [Eubacterium siraeum 70/3]
Length = 1171
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 17/173 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ + G+ +V+ ++G+G +++ + ++ I + + L VPV
Sbjct: 481 KKGAQIRSLSDISQGDLVVHGSYGIGVFEGVQKLTADKVSKDYIKIKYAGTDV-LYVPVT 539
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ I S R KL + +T QE + ++L
Sbjct: 540 QLDLISRYIGSGDADTVRLNKLGTDTWKKAKTKAKAATQE---------------MAKEL 584
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+ K+ ++ + V + + I I+ ++ +
Sbjct: 585 IELYSRRMKAKGFAFSPDTEQQHIFEDHFSYVETDDQLRCIEEIKHDMMRTAP 637
>gi|167751280|ref|ZP_02423407.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
gi|167655787|gb|EDR99916.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
Length = 1175
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 17/173 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ + G+ +V+ ++G+G +++ + ++ I + + L VPV
Sbjct: 481 KKGAQIRSLSDISQGDLVVHGSYGIGVFEGVQKLTADKVSKDYIKIKYAGTDV-LYVPVT 539
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ I S R KL + +T QE + ++L
Sbjct: 540 QLDLISRYIGSGDADTVRLNKLGTDTWKKAKTKAKAATQE---------------MAKEL 584
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+ K+ ++ + V + + I I+ ++ +
Sbjct: 585 IELYSRRMKAKGFAFSPDTEQQHIFEDHFSYVETDDQLRCIEEIKHDMMRTAP 637
>gi|120437484|ref|YP_863170.1| transcription-repair coupling factor [Gramella forsetii KT0803]
gi|117579634|emb|CAL68103.1| transcription-repair coupling factor [Gramella forsetii KT0803]
Length = 1125
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/174 (8%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 4 QQKRDAMRQGF---RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+K+ + G+++ + HG+G +++ +V G K E + ++ L +
Sbjct: 421 AKKQAITLKELTNLEVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKL-IYGERDILYLS 479
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I GK + S + K + ++++
Sbjct: 480 IHSLHKISK------------FNGKDGKPPKIYKLGSNAWKNLKKKTKARVKHIAYDLIK 527
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + + ++ + + ++ ++ ++
Sbjct: 528 LYAKRRLEKGFKFDPDSYLQ---HELEASFMYEDTPDQSSSTAAVKADMENERP 578
>gi|296125668|ref|YP_003632920.1| transcription-repair coupling factor [Brachyspira murdochii DSM
12563]
gi|296017484|gb|ADG70721.1| transcription-repair coupling factor [Brachyspira murdochii DSM
12563]
Length = 1244
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 51/161 (31%), Gaps = 16/161 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G++ V+ +G+G + + G + ++ + + K L +PV + +
Sbjct: 521 DLNVGDYAVHVNYGIGKYLGLTRKLSNGKEKDYITLEYAKGD-KLYIPVEQMNFVQKYIS 579
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
G+A + + +K L E+++ +
Sbjct: 580 G------------HGEAPKLTQLGGSAWDKIKSKAREDALATARELIKLYAIRSNIHGNV 627
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y ++ + + + AIN I+ ++ S
Sbjct: 628 YGADTQWQ---DDFEASFKYEETADQLRAINDIKEDMESGK 665
>gi|226321322|ref|ZP_03796849.1| transcription-repair coupling factor [Borrelia burgdorferi Bol26]
gi|226233118|gb|EEH31870.1| transcription-repair coupling factor [Borrelia burgdorferi Bol26]
Length = 1125
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|118602982|ref|YP_904197.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|118567921|gb|ABL02726.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 1142
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ +GVG +K Q +F + + L VP+ I
Sbjct: 475 EIKMGDAIVHENYGVGRYLGLKPQIFDDQSQDFLTLEYAD-NAKLMVPITSLNLISRYAG 533
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ ++ WS+ ++ L +A + +++ +
Sbjct: 534 ISSENAP--------LHKLGTNQWSKAKKKAGE-----ALFDVAAELLEIYAKRASKISF 580
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ A + V + + + ++ + ++ S
Sbjct: 581 AFPK--PNDAYSSFVASFPFEETPDQLKTMDEVLADMQSCRP 620
>gi|15594968|ref|NP_212757.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
B31]
gi|3914012|sp|O51568|MFD_BORBU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|2688542|gb|AAC66973.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
B31]
Length = 1125
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|153854681|ref|ZP_01995931.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
gi|149752785|gb|EDM62716.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
Length = 1126
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 59/172 (34%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ ++ + G+++V+ HGVG I++ V + ++ I++ + L +P
Sbjct: 429 TYEGRKIQSFSELKPGDYVVHENHGVGVYQGIEKIVVDKISKDYMKISYAQ-GGNLYIPA 487
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + K + ++ K+ ++V+
Sbjct: 488 TQLDLIQKYASA------------DAKKPKLNKLGTQEWNRTKTKVRGAVKEIARDLVKL 535
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Q Y E +++ M + + AI ++ ++ S
Sbjct: 536 YAARQEQDGYVYGEDTVWQREFEEMFP---FEETEDQMMAIEAVKKDMESHK 584
>gi|312149190|gb|ADQ29261.1| transcription-repair coupling factor [Borrelia burgdorferi N40]
Length = 1125
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|312148294|gb|ADQ30953.1| transcription-repair coupling factor [Borrelia burgdorferi JD1]
Length = 1125
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|223889464|ref|ZP_03624050.1| transcription-repair coupling factor [Borrelia burgdorferi 64b]
gi|223885150|gb|EEF56254.1| transcription-repair coupling factor [Borrelia burgdorferi 64b]
Length = 1125
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|224534488|ref|ZP_03675064.1| transcription-repair coupling factor [Borrelia spielmanii A14S]
gi|224514165|gb|EEF84483.1| transcription-repair coupling factor [Borrelia spielmanii A14S]
Length = 1129
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAINSFIEIEKNSHVVHINHGIGIFRQIKRIKTSALEKD-YIEIEYAEGERLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A E++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKIGSKAWIKNKANAKKRIEEIADELIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y + + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPKDNELQL---LFESEFPYDETPDQITAIKEIKEDMMS 600
>gi|216264837|ref|ZP_03436829.1| transcription-repair coupling factor [Borrelia burgdorferi 156a]
gi|215981310|gb|EEC22117.1| transcription-repair coupling factor [Borrelia burgdorferi 156a]
Length = 1125
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQIRAIKEIKEDMMS 600
>gi|255037444|ref|YP_003088065.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
18053]
gi|254950200|gb|ACT94900.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
18053]
Length = 1115
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ + G+ + + +G+G ++ ++V G + E V +D L V V I
Sbjct: 433 ELKSLQVGDFVTHVDYGIGRFGGMERKDVNGKEQEA-VRLIYRDNDLLYVSVHNLHKIAK 491
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
E G + S + +K+ E++ + P
Sbjct: 492 YTGKE------------GTPPAMSKLGSGEWEAKKSKVKKQLKDIAHELIALYAKRRQAP 539
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + + ++ + A ++ ++
Sbjct: 540 GFPFSKDNYLQV---ELESSFIYEDTPDQATATANVKDDMEKGHP 581
>gi|322379145|ref|ZP_08053542.1| transcription-repair coupling factor [Helicobacter suis HS1]
gi|322380425|ref|ZP_08054627.1| transcription-repair coupling factor [Helicobacter suis HS5]
gi|321147136|gb|EFX41834.1| transcription-repair coupling factor [Helicobacter suis HS5]
gi|321148441|gb|EFX42944.1| transcription-repair coupling factor [Helicobacter suis HS1]
Length = 986
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 20/163 (12%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ +GVG + +Q + G +F + +++ L +PV +
Sbjct: 356 DELSPGDFVVHENYGVGLFKGLVQQSIFGSVRDF-IALEYQNEDMLLLPVENLHLVERYI 414
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ +++ + K+ + I E+ + ++
Sbjct: 415 ANNFPVLDKLG------------------KSSFIKLKAKVHAEILEMASQIINLAAKRYL 456
Query: 132 SYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E+ +SA + + + +I I +L+
Sbjct: 457 LEGEKINADSAKLKAFKQACGFTLTPDQESSITAILEDLAQGR 499
>gi|224531763|ref|ZP_03672395.1| transcription-repair coupling factor [Borrelia valaisiana VS116]
gi|224511228|gb|EEF81634.1| transcription-repair coupling factor [Borrelia valaisiana VS116]
Length = 1124
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 57/170 (33%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K + H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAISSFIEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGGDPKNIK------------LDKISSKTWIKNKANAKKRIEEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y + ++ E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPKDNEFQL---LFESEFPYDETPDQITAIKEIKEDMMS 600
>gi|291556783|emb|CBL33900.1| transcription-repair coupling factor [Eubacterium siraeum V10Sc8a]
Length = 1175
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 17/173 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ + G+ +V+ ++G+G +++ + ++ I + + L VPV
Sbjct: 481 KKGAQIRSLSDISQGDLVVHGSYGIGVFEGVQKLTADKVSKDYIKIKYAGTDV-LYVPVT 539
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ I S R KL + +T QE + ++L
Sbjct: 540 QLDLISRYIGSGDADTVRLNKLGTDTWKKAKTKAKAATQE---------------MAKEL 584
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+ K+ ++ + V + + I I+ ++ +
Sbjct: 585 IELYSRRMKAKGFAFSPDTEQQHIFEDHFSYVETDDQLRCIEEIKHDMMRTAP 637
>gi|325846766|ref|ZP_08169681.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481524|gb|EGC84565.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 1163
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 58/169 (34%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ G+++V+ +G+G I + EV K ++FVI + + VPV +
Sbjct: 489 RDIINYSDIEIGDYVVHENNGIGIYKGISQIEVNNTKKDYFVIE-YQGNDKVFVPVDQMD 547
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + +G ++ S + ++ + ++V +
Sbjct: 548 LVSKYIGN------------KGDKPKISSLGSNQWKKAKQRAKKAVDEIADDLVELYAKR 595
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + S+ +I+ I+ ++
Sbjct: 596 SKARGHAFAKDTPWQ---KEFEDSFIYEETDSQLRSIDEIKDDMEDIKP 641
>gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa
NIES-843]
gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa
NIES-843]
Length = 1160
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 68/181 (37%), Gaps = 27/181 (14%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQE--VAGMKL--EFFVIAFDKDK 54
++++ A Q R + +V+ HG+G ++++QE ++G+ ++ VI +
Sbjct: 472 RKRRQAASVQVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYA--D 529
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L+VP ++ + + E L + GKA + +
Sbjct: 530 GLLRVPADSVDNLSRYRHTGNQEPE--LHKISGKA--------------WEATKARVRKS 573
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ DL +Q + ++ R + + + +AI ++ +L S
Sbjct: 574 VKKLAVDLINIYAQRAQKSGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDLESDR 633
Query: 174 S 174
Sbjct: 634 P 634
>gi|27904769|ref|NP_777895.1| transcription-repair coupling factor [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|46396116|sp|Q89AK2|MFD_BUCBP RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|27904167|gb|AAO27000.1| transcription-repair coupling factor [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 697
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 44/169 (26%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K + + IV+ HGVG + +K E VI + + L VP+
Sbjct: 22 KNICDLSKLKINQPIVHFEHGVGRYQGLTTVTTRNIKTECVVINYAQ-NSKLYVPITYLY 80
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I + G + + YD+ ++ + +
Sbjct: 81 LISRYIGTSKK---DIPLHRLGNDLWNKEKKKANEKAYDSAAILLNIYSHRISQKGFSFK 137
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + AIN + ++ +
Sbjct: 138 KHHTK------------YKIFCERFPFTLTPDQDSAINSVLSDMYKSTP 174
>gi|261417240|ref|YP_003250923.1| transcription-repair coupling factor [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373696|gb|ACX76441.1| transcription-repair coupling factor [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302327048|gb|ADL26249.1| transcription-repair coupling factor [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 1132
Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ + + HG+G + EV G ++ ++ LK PV I +
Sbjct: 442 ESLNRGDLVAHEDHGIGRYLGLVRVEVNGGMVDCALLE-YDGGDRLKFPVSDLQKI--ER 498
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
L +E L + K I + ++ RDL ++ E
Sbjct: 499 LDRPEDIETKLDRLGSKT--------------WENIKKRVKQKVIQIARDLVELYAKREL 544
Query: 132 SYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + A I+ ++ S
Sbjct: 545 VEGFGFPPDGNMQKEFEDSFEYDPTPDQLRATADIKRDMESHRP 588
>gi|315122360|ref|YP_004062849.1| transcription-repair coupling factor [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495762|gb|ADR52361.1| transcription-repair coupling factor [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 1185
Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 17/163 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
G IV+ HG+G + EV+G + + + L VPV I
Sbjct: 498 ESSNIEEGSIIVHAEHGIGRFIRLSSIEVSGTSHDCLELHYAD-NAKLFVPVENIDLISQ 556
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ + W R K DL + + P
Sbjct: 557 YSTENETIML---------DKLGGSSWQSRKSNL--KKRLEDLAQKLVDIAAKRLIHNVP 605
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ S + ++ V++ V + + +A++ + + +S
Sbjct: 606 ALTVS-----QDLYSQFVKKFPHVETEDQEKAVDAVIQDFTSG 643
>gi|182414804|ref|YP_001819870.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
gi|177842018|gb|ACB76270.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
Length = 1205
Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 51/168 (30%), Gaps = 16/168 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ +V+ HG+ + + + A E + D + L VP+ ++
Sbjct: 484 QLLDFSELVEGDFVVHLQHGIAHYRGLTKLDTAQGVRE-VISLEFDDHVTLHVPLQESHL 542
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + + S R ++ + AE++R +
Sbjct: 543 ISRYVG------------LSKTKPQLGRIGSGRWEKARLAAERATIDLAAELLRIQAARE 590
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+QP ++ ++ + + AI + ++
Sbjct: 591 AQPGFAFPPDTTWQ---KEFEASFPFTETRDQLRAIEETKTDMERTQP 635
>gi|218249019|ref|YP_002374390.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
gi|218169497|gb|ACK68234.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
Length = 1158
Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 25/176 (14%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+++R A +Q G+++++ HG+G +++ E+ VI + + L+
Sbjct: 475 RKRRRAASKQVDLNQLNPGDYVIHKNHGLGKFLKLESL----ATREYLVIQY--EDGLLR 528
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VP + + + +H M + ++ ++ ++
Sbjct: 529 VPADSFDSLSRYRHTGSH------------PPELHKMTGKIWEKTKQRVRKSIKKLAVDL 576
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + Y ++ + + + +A+ ++++L S
Sbjct: 577 LNLYAKRAKKEGFIYPPDTPWQ---EELEDSFPYQPTPDQLKAVQDVKMDLESDRP 629
>gi|327313943|ref|YP_004329380.1| transcription-repair coupling factor [Prevotella denticola F0289]
gi|326946335|gb|AEA22220.1| transcription-repair coupling factor [Prevotella denticola F0289]
Length = 1175
Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 49/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ +V+ G+G + AG + + + + V + I
Sbjct: 476 ELQEMEPGDFLVHVDFGIGKFAGLVRV-PAGDSYQEMIRLVYQHNDIVDVSIHSLYKISK 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ S+ G+ + S K ++++ + +
Sbjct: 535 YRRSDT-----------GEPPRLSVLGSGAWDRLKEKAKKRIKDIARDLIKLYAKRRREK 583
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 584 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQELKQDMESARP 625
>gi|238022627|ref|ZP_04603053.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
gi|237865830|gb|EEP66966.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
Length = 1156
Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 54/182 (29%), Gaps = 26/182 (14%)
Query: 2 TFQQKRDA--------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD 53
+ ++K+ A G+ +V+ HG+G + ++ G E ++ +
Sbjct: 469 STRRKKHAAVSDGLLRDLAEISIGDPVVHEEHGIGRYIGLVSMDLGGEAQEMMLLEYAG- 527
Query: 54 KMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
+ L VPV + I + V+ L + A +K
Sbjct: 528 EAQLYVPVSQLHLISRYSGAAHENVQ--LHKLGSAA--------------WSKAKRKAAE 571
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ +L ++ + ++ + + AI + +L+
Sbjct: 572 KARDTAAELLNLYARRAAQEGYKFQFDEEGYRAFADGFGYEETEDQAAAIAAVIADLTQA 631
Query: 173 SS 174
Sbjct: 632 RP 633
>gi|325853962|ref|ZP_08171478.1| transcription-repair coupling factor [Prevotella denticola CRIS
18C-A]
gi|325484299|gb|EGC87229.1| transcription-repair coupling factor [Prevotella denticola CRIS
18C-A]
Length = 1175
Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 49/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ +V+ G+G + AG + + + + V + I
Sbjct: 476 ELQEMEPGDFLVHVDFGIGKFAGLVRV-PAGDSYQEMIRLVYQHNDIVDVSIHSLYKISK 534
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ S+ G+ + S K ++++ + +
Sbjct: 535 YRRSDT-----------GEPPRLSVLGSGAWDRLKEKAKKRIKDIARDLIKLYAKRRREK 583
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 584 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQELKQDMESARP 625
>gi|257062106|ref|YP_003139994.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
gi|256592272|gb|ACV03159.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
Length = 1158
Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 25/176 (14%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+++R A +Q G+++++ HG+G +++ E+ VI + + L+
Sbjct: 475 RKRRRAASKQVDLNQLNPGDYVIHKNHGLGKFLKLESL----ATREYLVIQY--EDGLLR 528
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VP + + + +H M + ++ ++ ++
Sbjct: 529 VPADSFDSLSRYRHTGSH------------PPELHKMTGKIWEKTKQRVRKSIKKLAVDL 576
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + Y ++ + + + +A+ ++++L S
Sbjct: 577 LNLYAKRAKKEGFIYPPDTPWQ---EELEDSFPYQPTPDQLKAVQDVKMDLESDRP 629
>gi|301165394|emb|CBW24965.1| transcription-repair coupling factor [Bacteriovorax marinus SJ]
Length = 1165
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 57/178 (32%), Gaps = 25/178 (14%)
Query: 2 TFQQKRDA------MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKM 55
T K+ + + G+ +++ HGVG ++ ++ K ++ V+ K
Sbjct: 480 TKATKKVSVDVFAEQLATLKKGDFVIHSEHGVGVYDGLESLDIGDSKSDYIVL-IYKGND 538
Query: 56 CLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAI 115
+ VPV K I A +L+ + + + S +
Sbjct: 539 KVYVPVYKMNLIQKHADGNATISTDSLRTNK-----------------FSNLKSKARNSA 581
Query: 116 AEVVRDLHRTDSQPEKSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++ DL + ++ + S + + + A+N + ++
Sbjct: 582 KKLAFDLLKLQAERQSSSGYSFSAPDQEYRDFEMAFPFQETPDQINAVNEVIESMQKP 639
>gi|328948120|ref|YP_004365457.1| transcription-repair coupling factor [Treponema succinifaciens DSM
2489]
gi|328448444|gb|AEB14160.1| transcription-repair coupling factor [Treponema succinifaciens DSM
2489]
Length = 1246
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G++IV+ +G+G I+ + G + ++ + + +++ VP+ + +
Sbjct: 582 DLTPGDYIVHVNYGIGLFKGIERVKAMGTERDYIKLEYADEEIA-FVPIEQVNMVQRYIG 640
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
SE R+ WS R + K+ +++ + +
Sbjct: 641 SENEK--------PRLDRIGSKNWSARKAKVQQKVE----EIAEKLIDLYSKRQASRGFP 688
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +A ++ + A I+ ++
Sbjct: 689 FPKDTEWNAA---FEAAFPYEDTPDQFSATQEIKADMEKPVP 727
>gi|332185437|ref|ZP_08387185.1| carD-like/TRCF domain protein [Sphingomonas sp. S17]
gi|332014415|gb|EGI56472.1| carD-like/TRCF domain protein [Sphingomonas sp. S17]
Length = 1063
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 21/168 (12%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKL--EFFVIAFDKDKMCLKVPVGKAIDI 67
R G+ +++ HG+GT+ ++ + + + +D + L VPV A +
Sbjct: 411 QSAEIRVGDTVIHEDHGIGTVAGLERLARDDTTAGGDAIKLTYARDAVRL-VPVADADRL 469
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
A L + GK W R +G AIAE R L
Sbjct: 470 WRY---GAEDDAVTLDTLDGK------SWQER--------RAGIDAAIAETARGLTELAQ 512
Query: 128 QPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E +A R + + AI + +L+S
Sbjct: 513 ARGDRTAPVLDPEPAAYERFAAGFPFSETPDQRAAIEAVRSDLASGRP 560
>gi|160895086|ref|ZP_02075860.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
gi|156863517|gb|EDO56948.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
Length = 1174
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/183 (12%), Positives = 60/183 (32%), Gaps = 27/183 (14%)
Query: 2 TFQQKRDAMRQGFR-----------TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAF 50
+ +K+ + + G+ +++ +GVG I++ EV G+ + +V
Sbjct: 483 SSMKKKKNQKPRYSGEVIKDFSDISVGDCVIHERYGVGIYGGIEKVEVDGVLKD-YVTIN 541
Query: 51 DKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSG 110
+ L V + I S+ + + K ++ +++
Sbjct: 542 YAEGGKLYVLASEVDCIQKY--SDKEGRRPKINKLGSKD----------WEKTRSRVKGH 589
Query: 111 DLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
E+V + + YS+ +++ + + +AI + ++
Sbjct: 590 VATIAKELVNLYAKRQASQGFCYSKDTIWQ---QEFEEMFPYEETDDQKKAIAETKADME 646
Query: 171 SKS 173
S
Sbjct: 647 SSK 649
>gi|124007360|ref|ZP_01692067.1| transcription-repair coupling factor [Microscilla marina ATCC
23134]
gi|123987193|gb|EAY26933.1| transcription-repair coupling factor [Microscilla marina ATCC
23134]
Length = 1137
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 56/174 (32%), Gaps = 18/174 (10%)
Query: 3 FQQKRDAMR--QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ K M+ + G+++ + +GVG +++ E G E V +D L V
Sbjct: 449 SKSKALTMKALKALNPGDYVTHVDYGVGRFAGLEKVEANGKVQEA-VRLVYRDDDLLYVS 507
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ I + S + ++ L +++
Sbjct: 508 IHSLHKISKYSG------------KDSAPPKVHKLGSPEWETKKKRVKKRVLDIAEDLIE 555
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S P ++S+ ++ + ++ + +A ++ ++ S
Sbjct: 556 LYAKRKSAPGFAFSQDSFLQA---ELESSFIYEDTPDQAKATADVKADMEQNSP 606
>gi|110639820|ref|YP_680030.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
33406]
gi|110282501|gb|ABG60687.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
33406]
Length = 1122
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 15/174 (8%), Positives = 52/174 (29%), Gaps = 18/174 (10%)
Query: 3 FQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ K + + G+ + + G+ ++ E G E + F D + +
Sbjct: 423 SKSKSITLKELRTLQPGDFVAHADFGIARFAGLERIENNGHTQEAIRLVFRDDDLMV--- 479
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
+ + + S + + + +K+ E+++
Sbjct: 480 ISIHALHKISRYSGKDGQPPVMSKLGSGD----------WENKKSKVKRQVKDIAKELIQ 529
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + P +Y+ + + ++ + +A ++ ++ S
Sbjct: 530 LYAKRKAAPGFAYTPDSFLQV---ELESSFMYEDTPDQSKATADVKKDMESPHP 580
>gi|51598876|ref|YP_073064.1| transcription-repair coupling factor [Borrelia garinii PBi]
gi|51573447|gb|AAU07472.1| transcription-repair coupling factor [Borrelia garinii PBi]
Length = 1124
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 55/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K HIV+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIDSFIEIEKNSHIVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S ++ + S+ + A +++
Sbjct: 506 EQTNLIQKYIGSNPKNIK------------LDKISSKTWIKNKANAKKRIDEIADKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPEDNELQL---LFESEFPYDETPDQITAIKEIKEDMMS 600
>gi|219685734|ref|ZP_03540546.1| transcription-repair coupling factor [Borrelia garinii Far04]
gi|219672729|gb|EED29756.1| transcription-repair coupling factor [Borrelia garinii Far04]
Length = 1124
Score = 79.1 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 16/168 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
+ K H+V+ HG+G +IK + + ++ + ++ + L +P+ +
Sbjct: 449 KTKAIDSFIEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGEKLFIPIEQ 507
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I S ++ + S+ + A +++
Sbjct: 508 TNLIQKYIGSNPKNIK------------LDKISSKTWIKNKANAKKRIDEIADKLIELYS 555
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y E + E ++ + AI I+ ++ S
Sbjct: 556 KRESIKGIKYPEDNELQL---LFESEFPYDETLDQITAIKEIKEDMMS 600
>gi|294101748|ref|YP_003553606.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
DSM 12261]
gi|293616728|gb|ADE56882.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
DSM 12261]
Length = 1025
Score = 79.1 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 16/164 (9%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
++ + +V+ +GV ++E G + + ++ F K L VP + I
Sbjct: 367 KERLTENQLVVHEDYGVAVYRGVEEVASGGERFDSLILEFAN-KQRLLVPFMQIYKIDPL 425
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
E E L +RG R ++ K + +VR R +
Sbjct: 426 P--EEATAETVLDSLRG----------TRWKKAVEKTRERVREEVKNLVRLYARRELLKG 473
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + V V + + A I ++ S
Sbjct: 474 YAFP---VASEIYRHFVEAFPYVETPDQLRAEQEILQDMESSHP 514
>gi|183221209|ref|YP_001839205.1| transcription-repair coupling factor [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911300|ref|YP_001962855.1| transcription-repair coupling factor [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775976|gb|ABZ94277.1| Transcription-repair coupling factor [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779631|gb|ABZ97929.1| Transcription-repair coupling factor (TRCF; ATP-dependent helicase
Mfd) [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 1140
Score = 79.1 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 55/178 (30%), Gaps = 23/178 (12%)
Query: 2 TFQQKRDAMRQG----FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +K+ + + G+++V+ HGVG +I+ + G + +F + + L
Sbjct: 462 TRYKKQSSQMIESFIDLKEGDYVVHVNHGVGRFVKIERTKADGKERDFLKLEYAGGDS-L 520
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ + + L + K ++ +
Sbjct: 521 FVPLDQISLVQKYIGGTDSPKLDTLG-----------------KNSWKKAKERVQESVDK 563
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L S K ++ + + AI ++++L S
Sbjct: 564 LAEELVLLYSNRLKLNGFAFPPDTIWQEEFEAAFEFEETPDQISAIEAVKLDLESSRP 621
>gi|288928499|ref|ZP_06422346.1| transcription-repair coupling factor [Prevotella sp. oral taxon 317
str. F0108]
gi|288331333|gb|EFC69917.1| transcription-repair coupling factor [Prevotella sp. oral taxon 317
str. F0108]
Length = 1134
Score = 79.1 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 48/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + G + + ++ + V + I
Sbjct: 439 ELQEMEPGDFIVHVDFGIGKFGGLVRVPT-GNSYQEMIRIVYQNNDKVDVSIHSLYKISR 497
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ A R L G + K ++++ + ++
Sbjct: 498 YRKGTATEQPRLSTLGTGA-----------WERLKEKTKKRIKDIARDLIKLYAKRRTER 546
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++
Sbjct: 547 GFAFSHDSFMQ---HELEASFLYEDTPDQLKATTEVKADMERARP 588
>gi|315452882|ref|YP_004073152.1| transcription-repair coupling factor [Helicobacter felis ATCC
49179]
gi|315131934|emb|CBY82562.1| transcription-repair coupling factor [Helicobacter felis ATCC
49179]
Length = 988
Score = 79.1 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 56/171 (32%), Gaps = 18/171 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + +G+ +V+ +GVG + +Q + G +F + ++ L VPV
Sbjct: 346 PKAKPLNFALSELNSGDFVVHEDYGVGIFQGLVQQNILGSVRDF-IALEYQNHDRLFVPV 404
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ +++ GK + RA+ + A ++
Sbjct: 405 ENLHLLERYIAPNTPTLDKL-----GKGSFSKLKAKMRAELLGLAEDIISAHAARMLLEG 459
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ T + + + A ++ + AI + +L+S
Sbjct: 460 VQITPDPTQL-----KAFHHAR-------PFKLTLDQERAIEEVLGDLASG 498
>gi|261880194|ref|ZP_06006621.1| transcription-repair coupling factor [Prevotella bergensis DSM
17361]
gi|270333168|gb|EFA43954.1| transcription-repair coupling factor [Prevotella bergensis DSM
17361]
Length = 1210
Score = 79.1 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/176 (9%), Positives = 51/176 (28%), Gaps = 25/176 (14%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEV-----------AGMKLEFFVIAFDKDKMCLK 58
Q G+ IV+ G+G + + + + + ++ +
Sbjct: 508 ELQEMEPGDFIVHVDFGIGKFGGLVRVPIPTQGNTRQDATDDSQYQEVIRIIYQNNDKVD 567
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
V + I + S+A G+A T+ + K ++
Sbjct: 568 VSIHSLYKISKYRSSDA-----------GEAPRLSTLGTGAWDRMKEKAKKRIKDIARDL 616
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R + + ++S + + ++ + +A ++ ++
Sbjct: 617 IRLYAKRRKEKGYAFSPDSFMQ---QELEASFLYEDTPDQLKATQDVKADMERARP 669
>gi|305431881|ref|ZP_07401048.1| transcription-repair coupling factor [Campylobacter coli JV20]
gi|304444965|gb|EFM37611.1| transcription-repair coupling factor [Campylobacter coli JV20]
Length = 978
Score = 79.1 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 59/170 (34%), Gaps = 16/170 (9%)
Query: 4 QQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63
++K + + + G+ IV+ +GVG ++ ++ K EF V ++ L +PV
Sbjct: 334 KRKANLIIDELKIGDFIVHEDYGVGKFLGLEMISISEAKKEF-VAIEYQNSDKLLLPVEN 392
Query: 64 AIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH 123
I + + L+ ++ R + L+AIA + +
Sbjct: 393 LYMIDKYLGASGG-----IPLLDRLGKMTFIRLKERLKT--------KLLAIASEIVIMA 439
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + A V + + + +A I + +
Sbjct: 440 AKRALIKPKEIKIDYADQAY--FVSKAGFSYTQDQNKACEEILNDFENGK 487
>gi|269216663|ref|ZP_06160517.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
gi|269129897|gb|EEZ60980.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
Length = 205
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 14 FRTGEHIVYPAHGVGTITEI-KEQEVAGMKLEFFVIA-FDKDKMCLKVPVGKAIDIGMRK 71
+ + +VY +GV +T+ + G ++V+ K + VP+ + R
Sbjct: 35 YSVNDRVVYANYGVCIVTKTNEPLSFGGADRRYYVLEATRKRGGTVYVPMDHEDFL--RP 92
Query: 72 LSEAHFVERALKLVR--GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT---- 125
+ + V + K + + + D + V + +
Sbjct: 93 ILSRNAVLDLVDRFPLIETDDFKDSNSHTVEDHFKQMLRENDCLQAMRVAKTMRERIAEQ 152
Query: 126 -DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ S +LY+ A+ ++ E +A + E E + ++
Sbjct: 153 ESKRHIPSSMYTRLYDQAVGLVLSEFSAALDMPEDEVMRIMHE 195
>gi|323344976|ref|ZP_08085200.1| transcription-repair coupling factor [Prevotella oralis ATCC 33269]
gi|323094246|gb|EFZ36823.1| transcription-repair coupling factor [Prevotella oralis ATCC 33269]
Length = 1177
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 13/165 (7%), Positives = 50/165 (30%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G++IV+ G+G + +G + + ++ + V + I
Sbjct: 488 ELQEMEPGDYIVHVDFGIGKFGGLVRV-PSGNSYQEVIRIIYQNNDKVDVSIHSLYKISK 546
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ G+ + + + + ++++ + +
Sbjct: 547 YRRQNT-----------GEPPRLSALGTGAWERLKERTKKRIKDIARDLIKLYAKRRHEK 595
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 596 GFAFSADSFMQ---HELEASFLYEDTPDQLKATQEVKADMESLRP 637
>gi|196229584|ref|ZP_03128449.1| transcription-repair coupling factor [Chthoniobacter flavus
Ellin428]
gi|196226816|gb|EDY21321.1| transcription-repair coupling factor [Chthoniobacter flavus
Ellin428]
Length = 1082
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 17/170 (10%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ +++V+ HG+G +K A K E ++ D L VP+ ++
Sbjct: 392 RSQIDFSELNEDDYVVHLEHGIGRYEGMKSIPRADGKTEEVLVLAFADDARLYVPLEQSY 451
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ AL ++ K + A+ + L
Sbjct: 452 LVSRYVGVGKK--NPALSVLGDGKWAKAKKNAE--------------KAVFDYASKLLAV 495
Query: 126 DSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ E + ++ R ++ + AI + ++ S+
Sbjct: 496 HAERETAVGYAFPPDNKWQREFESSFLFKETVDQLTAIAASKADMESERP 545
>gi|189501723|ref|YP_001957440.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497164|gb|ACE05711.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
5a2]
Length = 1123
Score = 78.7 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 14/165 (8%), Positives = 55/165 (33%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
+ G+++V+ HG+ + + V E + + + + V + +
Sbjct: 435 ELNNLQPGDYVVHIDHGIARFSGLSRVSVNDKVQEVLRLVYKDNDV---VYLSLHALHKI 491
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K + + + + A ++ +K+ + E+++ + P
Sbjct: 492 SKYTGKEGIVPTMSKLGSGA----------WEQKKSKVKHKVQVIAKELIQLYSKRKYAP 541
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S+ ++ + ++ + A ++ ++ +
Sbjct: 542 GFAFSKDTFLQAEME---SSFIYEDTPDQASATADVKKDMEAPHP 583
>gi|216263646|ref|ZP_03435641.1| transcription-repair coupling factor [Borrelia afzelii ACA-1]
gi|215980490|gb|EEC21311.1| transcription-repair coupling factor [Borrelia afzelii ACA-1]
Length = 1124
Score = 78.7 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K A H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIASFIEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGERLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKIGSKTWIKNKVNAKKRIEEIAEKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y + + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPKDNELQL---LFESEFPYDETPDQITAIKEIKEDMMS 600
>gi|111115454|ref|YP_710072.1| transcription-repair coupling factor [Borrelia afzelii PKo]
gi|110890728|gb|ABH01896.1| transcription-repair coupling factor [Borrelia afzelii PKo]
Length = 1124
Score = 78.7 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K A H+V+ HG+G +IK + + ++ + ++ + L +P+
Sbjct: 447 SSKTKAIASFIEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKD-YIEIEYAEGERLFIPI 505
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I S+ ++ + S+ + +++
Sbjct: 506 EQTNLIQKYIGSDPKNIK------------LDKIGSKTWIKNKVNAKKRIEEIAEKLIEL 553
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y + + E + + AI I+ ++ S
Sbjct: 554 YSKRESIKGIKYPKDNELQL---LFESEFPYDETPDQITAIKEIKEDMMS 600
>gi|288799748|ref|ZP_06405207.1| transcription-repair coupling factor [Prevotella sp. oral taxon 299
str. F0039]
gi|288332996|gb|EFC71475.1| transcription-repair coupling factor [Prevotella sp. oral taxon 299
str. F0039]
Length = 1147
Score = 78.7 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 15/165 (9%), Positives = 48/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + +G + + + + + + I
Sbjct: 458 ELQEMEPGDFIVHVDFGIGKFGGLVRV-PSGESYQEMIRIIYNNNDKVDISIHSLYKISK 516
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K + R L G + + ++++ + +
Sbjct: 517 YKRGDTEQPPRLSTLGTGA-----------WERIKERTKKRIKDIARDLIKLYAKRRHEK 565
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 566 GFAFSVDSFLQ---HELEASFLYEDTPDQLKATQEVKADMESGRP 607
>gi|302345727|ref|YP_003814080.1| transcription-repair coupling factor [Prevotella melaninogenica
ATCC 25845]
gi|302150109|gb|ADK96371.1| transcription-repair coupling factor [Prevotella melaninogenica
ATCC 25845]
Length = 1178
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 15/165 (9%), Positives = 49/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ +V+ G+G + AG + + + + V + I
Sbjct: 485 ELQEMEPGDFLVHVDFGIGKFAGLVRV-PAGDSYQEMIRLVYQHNDIVDVSIHSLYKISK 543
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ G+ + S K ++++ + +
Sbjct: 544 YRRGDS-----------GEPPRLSVLGSGAWDRLKEKAKKRIKDIARDLIKLYAKRRREK 592
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 593 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQELKQDMESARP 634
>gi|16331597|ref|NP_442325.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|3914015|sp|Q55750|MFD_SYNY3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|1001661|dbj|BAA10395.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
Length = 1199
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 55/176 (31%), Gaps = 25/176 (14%)
Query: 3 FQQKRDAMRQ----GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
+++R +Q G+++V+ +HG+G ++ E+ +I + L+
Sbjct: 512 RKRRRATSKQVDINKLSPGDYVVHKSHGIGKFLKLDAL----ANREYLMIQYA--DGILR 565
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VP + + + M + + K+ ++
Sbjct: 566 VPADSLDSLSR------------FRHTGTRPPELHKMGGKVWEATKNKVRKAVKKLAVDL 613
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + Q +Y ++ + + + +A+ ++ +L
Sbjct: 614 LNLYAKRAKQVGYAYPPDSPWQ---QELEDSFPYQPTPDQLKAVQDVKRDLEGDRP 666
>gi|319778049|ref|YP_004134479.1| dead/deah box helicase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171768|gb|ADV15305.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 1129
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 19/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HG+G + +++ ++AG + V L VPV I
Sbjct: 467 ELRIGDVVVHEDHGLGVLAAVEQVDLAGQHQD-VVRLEYHGGASLLVPVDDFGKIWRY-- 523
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ +L + G+ K L I + + L
Sbjct: 524 -GSEPEAVSLDRLNGEGWP--------------KRREAALREIDRLAKRLVGLAEMRSSQ 568
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+E A L R + + + AI + +LSS
Sbjct: 569 PAEIIKPSRADLARFAAKFPYTETPDQAAAIRAVLDDLSSGR 610
>gi|253580271|ref|ZP_04857537.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848364|gb|EES76328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 171
Score = 78.3 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 55/168 (32%), Gaps = 7/168 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ G+ + P G+ I I K + ++++ +D+ D +R
Sbjct: 2 KYEIGDFVSKPVTGICKIENILYLNPQDEKNDKLYYLMKPVEDEKEKIYVPVSNSDSRLR 61
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
+K + R Q Y + + + A+ +++ +++ +
Sbjct: 62 LCLTKEEAWNLIKRIPDIPTAWTNNEKMREQNYKEAVRANNPEALVAIIKMIYQRKQKRL 121
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + ++ + ++ A N + E+ + E I +
Sbjct: 122 AQGKKCTATDARYFQIAENLLYMELGVALEKPKQEICKTIIDYIDQNK 169
>gi|282881355|ref|ZP_06290034.1| transcription-repair coupling factor [Prevotella timonensis CRIS
5C-B1]
gi|281304761|gb|EFA96842.1| transcription-repair coupling factor [Prevotella timonensis CRIS
5C-B1]
Length = 1164
Score = 78.3 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 48/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + G + + + + V + I
Sbjct: 472 ELQEMEPGDFIVHVDFGIGKFGGLVRVPT-GNTYQEMIRIIYQRGDIVDVSIHALYKISK 530
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ S+ G+ T+ + + K ++++ + +
Sbjct: 531 YRRSDT-----------GEPPRLSTLGTGAWERLKEKAKKRIKDIARDLIKLYAKRQHEK 579
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S+S + + ++ + +A ++ ++
Sbjct: 580 GFSFSVDTFMQ---QELEASFLYEDTPDQVKATAEVKGDMEKARP 621
>gi|260912528|ref|ZP_05919061.1| transcription-repair coupling factor [Prevotella sp. oral taxon 472
str. F0295]
gi|260633351|gb|EEX51508.1| transcription-repair coupling factor [Prevotella sp. oral taxon 472
str. F0295]
Length = 1134
Score = 78.3 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 48/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + G + + ++ + V + I
Sbjct: 439 ELQEMEPGDFIVHVDFGIGKFGGLVRVPT-GNSYQEMIRIVYQNNDKVDVSIHSLYKISR 497
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ A R L G + K ++++ + ++
Sbjct: 498 YRKGTATEQPRLSTLGTGA-----------WERLKEKTKKRIKDIARDLIKLYAKRRTER 546
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++
Sbjct: 547 GFAFSHDSFMQ---HELEASFLYDDTPDQLKATTEVKADMERARP 588
>gi|296436295|gb|ADH18469.1| transcription-repair coupling factor [Chlamydia trachomatis G/9768]
gi|296438154|gb|ADH20315.1| transcription-repair coupling factor [Chlamydia trachomatis
G/11074]
gi|297140655|gb|ADH97413.1| transcription-repair coupling factor [Chlamydia trachomatis G/9301]
Length = 1079
Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGAS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR++E K + L + ++Q + S
Sbjct: 493 EKTPD--LHHLNGAKW-------RRSRELSEKS-------VILYAEKLIQMEAQRSTANS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI+ I ++ S
Sbjct: 537 FIYPPHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDK 576
>gi|149195831|ref|ZP_01872888.1| Transcription-repair coupling factor, MFD (superfamily II helicase
) [Lentisphaera araneosa HTCC2155]
gi|149141293|gb|EDM29689.1| Transcription-repair coupling factor, MFD (superfamily II helicase
) [Lentisphaera araneosa HTCC2155]
Length = 1062
Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 20/170 (11%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
QK G+ V+ +G+ IK + EF ++ F L +P+ +
Sbjct: 398 QKNLEYEPELNEGDFAVHANYGICRYLGIKVKN----SQEFLLLEFAD-DRKLYLPLDSS 452
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
+ + + A + + Q+ K + AE++R
Sbjct: 453 HLLMRYIGGKKSVPKLA------------RLGTGFWQKSLDKAENSARDYAAELLRLQAA 500
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S+ + ++S + + AI ++ ++
Sbjct: 501 REHSEGISFPKDNHWQS---LFEESFPYEETPDQLSAIEEVKKDMERAKP 547
>gi|212550582|ref|YP_002308899.1| transcription-repair coupling factor [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548820|dbj|BAG83488.1| transcription-repair coupling factor [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 1109
Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 50/165 (30%), Gaps = 16/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q F+ G+++V+ HG+G + E G E + F + + + I
Sbjct: 426 ELQQFQVGDYLVHIDHGIGKFGGLIRTETNGKMQEVVKMTFLNED-TIFTSIHNLHKIFK 484
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K + + SR + K ++++ + +
Sbjct: 485 YKG------------KDNEPPRLNRLGSRVWENLKEKTKKKVKDIAKDLIQLYSKRREEK 532
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + N+ + + I+ ++ +
Sbjct: 533 GFAFSSDTYLQ---KELEASFFYENTPDQAKVNMEIKKDMENIRP 574
>gi|15605481|ref|NP_220267.1| transcription-repair coupling factor [Chlamydia trachomatis
D/UW-3/CX]
gi|3329208|gb|AAC68343.1| Transcription-Repair Coupling [Chlamydia trachomatis D/UW-3/CX]
gi|296437224|gb|ADH19394.1| transcription-repair coupling factor [Chlamydia trachomatis
G/11222]
gi|297748878|gb|ADI51424.1| Transcription-repair coupling factor [Chlamydia trachomatis D-EC]
gi|297749758|gb|ADI52436.1| Transcription-repair coupling factor [Chlamydia trachomatis D-LC]
Length = 1079
Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGAS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR++E K + L + ++Q + S
Sbjct: 493 EKAPD--LHHLNGAKW-------RRSRELSEKS-------VILYAEKLIQMEAQRSTANS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI+ I ++ S
Sbjct: 537 FIYPPHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDK 576
>gi|76789489|ref|YP_328575.1| transcription-repair coupling factor [Chlamydia trachomatis
A/HAR-13]
gi|237805099|ref|YP_002889253.1| transcription-repair coupling factor [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311580|ref|ZP_05354150.1| transcription-repair coupling factor [Chlamydia trachomatis 6276]
gi|255317881|ref|ZP_05359127.1| transcription-repair coupling factor [Chlamydia trachomatis 6276s]
gi|76168019|gb|AAX51027.1| transcription-repair coupling factor [Chlamydia trachomatis
A/HAR-13]
gi|231273399|emb|CAX10314.1| transcription-repair coupling factor [Chlamydia trachomatis
B/TZ1A828/OT]
Length = 1079
Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGAS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR++E K + L + ++Q + S
Sbjct: 493 EKAPD--LHHLNGAKW-------RRSRELSEKS-------VILYAEKLIQMEAQRSTANS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI+ I ++ S
Sbjct: 537 FIYPPHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDK 576
>gi|237803178|ref|YP_002888372.1| transcription-repair coupling factor [Chlamydia trachomatis
B/Jali20/OT]
gi|231274412|emb|CAX11207.1| transcription-repair coupling factor [Chlamydia trachomatis
B/Jali20/OT]
Length = 1079
Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGAS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR++E K + L + ++Q + S
Sbjct: 493 EKAPD--LHHLNGAKW-------RRSRELSEKS-------VILYAEKLIQMEAQRSTANS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI+ I ++ S
Sbjct: 537 FIYPPHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDK 576
>gi|225849434|ref|YP_002729599.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
mfd) [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643749|gb|ACN98799.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
mfd) [Sulfurihydrogenibium azorense Az-Fu1]
Length = 938
Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 20/160 (12%), Positives = 54/160 (33%), Gaps = 18/160 (11%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
+ G++I++ +G+G I+ +E+ G +F ++ + + + V I K
Sbjct: 289 KEGDYIIHEDYGIGVFKGIETREIRGKVYDFMILEYA-EGEKVYVSYLHFDKIHKYK--- 344
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ + +R +E + ++++ S
Sbjct: 345 ----TQGFIKLDKIGAPSWKNLKKRVKESLKNL-------ARQLIKLYSERQSIKRPPLD 393
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + R+ V + + +AI ++ +LS
Sbjct: 394 VEGQL---ITKFERDFPYVETPDQLKAIKEVKKDLSKDRP 430
>gi|225568648|ref|ZP_03777673.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
15053]
gi|225162576|gb|EEG75195.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
15053]
Length = 1113
Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ ++ + G+++V+ HG+G I++ EV + ++ I++ K L +P
Sbjct: 429 SYEGRKIQSFSELKPGDYVVHENHGLGIYQGIEKIEVDKVAKDYMKISYAK-GGNLYIPA 487
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + K + ++ + K+ ++V
Sbjct: 488 TQLDLIQKYASA------------DAKKPKLNRLGTQEWTKTKKKVRGAVKEIARDLVAL 535
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Q Y +++ M + + AI ++ ++ S+
Sbjct: 536 YAARQEQEGYVYGADTVWQQEFEEMFP---FEETEDQLLAIEAVKRDMQSRR 584
>gi|212696152|ref|ZP_03304280.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
7454]
gi|212676781|gb|EEB36388.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
7454]
Length = 1163
Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 57/169 (33%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
+ +++V+ +G+G I + EV K ++FVI + + VPV +
Sbjct: 489 RDIINYSDIEIDDYVVHENNGIGIYKGISQIEVNNTKKDYFVIE-YQGNDKVFVPVDQMD 547
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + +G ++ S + ++ + ++V +
Sbjct: 548 LVSKYIGN------------KGDKPKISSLGSNQWKKAKQRAKKAVDEIADDLVELYAKR 595
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ ++ + S+ +I+ I+ ++
Sbjct: 596 SKARGHAFAKDTPWQ---KEFEDSFIYEETDSQLRSIDEIKNDMEDIKP 641
>gi|269792682|ref|YP_003317586.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100317|gb|ACZ19304.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 994
Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 17/158 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ +V+ +GV I+ E G++ ++ + F + K L +P + + A
Sbjct: 354 GDLMVHEDYGVCRFLGIEMIEQGGVQQDYIALEFAQGK-RLLMPTYRIARLYRYAGDPAE 412
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
+LK R WSR QE K A ++ R S ++
Sbjct: 413 AELDSLKRGR---------WSRSYQEAKEKAR----EAAERLLSAQARRHSARGIAF--- 456
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + ++ + I ++
Sbjct: 457 DPLEREMEELRSTFPYRETVDQVRCWEEIRADMERPVP 494
>gi|323342263|ref|ZP_08082495.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322463375|gb|EFY08569.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 1138
Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 52/157 (33%), Gaps = 16/157 (10%)
Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77
+++V+ +G+G I +E+ G+ +F I +D L VP+ + + RK
Sbjct: 475 DYVVHRQYGIGKYMGITTKEIEGIHKDFMRI-LYRDGDELFVPLEQFNLV--RKFMSREA 531
Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQ 137
L + Q+ +I ++V ++S
Sbjct: 532 ASVRLSKLGTST----------WQKNKERIKQDVADVADKLVTLYSTRMDASGFAFSPDT 581
Query: 138 LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Y+ + + + AI+ I+ ++
Sbjct: 582 EYQ---KQFEDAFEYELTQDQKTAIDEIKRDMERDVP 615
>gi|261840243|gb|ACY00009.1| transcription-repair coupling factor [Helicobacter pylori 52]
Length = 999
Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPTK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|332652511|ref|ZP_08418256.1| putative transcriptional regulator, CarD family [Ruminococcaceae
bacterium D16]
gi|332517657|gb|EGJ47260.1| putative transcriptional regulator, CarD family [Ruminococcaceae
bacterium D16]
Length = 171
Score = 77.5 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 10/169 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVA-GMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
F G IVY GV + + G K+E++ + + + VPV + MR
Sbjct: 2 MFSIGSLIVYSGTGVCRVEAVGPPPFDPGSKVEYYTLIPLQSTGTIYVPVDT--KVFMRP 59
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRR--AQEYDAKINSGDLIAIAEVVRDLHRTDSQ- 128
+ + ++ + + + R AQ Y + ++S + ++++ +
Sbjct: 60 ILSREAAQELIRRIPEIQQAQLEHLDYRMLAQRYRSFLDSHSCEDLVQLIKTAYTKSRAN 119
Query: 129 ----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ S ++ + A + E++A I E + I +
Sbjct: 120 TRSGKKPSKVDQDFQKRAEFLLHDELSAALDIPFDEVGDYITQQVEQMK 168
>gi|78777763|ref|YP_394078.1| transcription-repair coupling factor [Sulfurimonas denitrificans
DSM 1251]
gi|78498303|gb|ABB44843.1| Transcription-repair coupling factor [Sulfurimonas denitrificans
DSM 1251]
Length = 990
Score = 77.5 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G+++V+ +GVG I++ E+ G +F VI + + +PV
Sbjct: 346 RRRKSSILLDDLKVGDYVVHEDYGVGIFEGIEQTEILGGVKDFIVIKYIG-DDKILLPVE 404
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I S G V + + + L ++V
Sbjct: 405 NLDAIDRYIASG------------GSVPVLDKLGKGSFGKLKESVKKRLLEIAGQIVNTA 452
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + A ++ + + + ++IN I +SS
Sbjct: 453 AARELITAPKINVDEDELRAFQKLSG---FLYTDDQSQSINEIITQMSSG 499
>gi|315638290|ref|ZP_07893471.1| transcription-repair coupling factor [Campylobacter upsaliensis
JV21]
gi|315481637|gb|EFU72260.1| transcription-repair coupling factor [Campylobacter upsaliensis
JV21]
Length = 974
Score = 77.5 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ IV+ +GVG ++ ++G K EF V ++ L +PV I
Sbjct: 339 DELKIGDFIVHEDYGVGKFLGLELLNISGAKKEF-VALSYQNNDKLLLPVENLYMIDKYL 397
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
G + + + ++ + L ++++ + K
Sbjct: 398 GVG------------GAIPLLDRLGKSTFIKLKERLKTKLLALASQIIAMAAKRALIKPK 445
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E ++ A V+ + + +A I + S
Sbjct: 446 ---ELKIDFEAQADFVQRAGFSYTEDQVKACEDILEDFKSSR 484
>gi|148245051|ref|YP_001219745.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
okutanii HA]
gi|146326878|dbj|BAF62021.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
okutanii HA]
Length = 1145
Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ IV+ +GVG +K + +F V+ + L VP+ I
Sbjct: 478 EIKIGDAIVHENYGVGRYLGLKTKIFDKQSQDFLVLKYAN-NAKLMVPIISFNLISRYAG 536
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
K+ + + + + K E+++ + SQ S
Sbjct: 537 ISL------------KSTPLHKLGTNQWAKAKKKAGEALFDIAVELLKISAKRSSQTGFS 584
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + V + + + +N + ++ S+
Sbjct: 585 FPK---PNDDYSSFVANFPFEETPDQIKTMNEVLADMQSQQP 623
>gi|289450323|ref|YP_003474448.1| CarD-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184870|gb|ADC91295.1| CarD-like protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 210
Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 11/164 (6%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGM--KLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ G++I+Y GV + I + + G+ + +++ + D + + VP+ ++ MR
Sbjct: 1 MYNIGDYIIYGNSGVCKVITISKAPIEGLNPERDYYTLQPIFDSVMIYVPIDT--EVFMR 58
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWS--RRAQEYDAKINSGDLIAIAEVVRDLHRTD-- 126
L VE L+ + + + A EY INS + +++ + + +
Sbjct: 59 PLMTVLEVEDLLRKIPDIKVSIISTNNSTELAGEYRKLINSHKSKDLVRLIKSIKKKNVK 118
Query: 127 ---SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
++ + + A E++ + I +
Sbjct: 119 AEKEGRRIGLTDMRFLKQAEELFFGELSIILDIPIENVSEYVLK 162
>gi|281357501|ref|ZP_06243989.1| transcription-repair coupling factor [Victivallis vadensis ATCC
BAA-548]
gi|281316104|gb|EFB00130.1| transcription-repair coupling factor [Victivallis vadensis ATCC
BAA-548]
Length = 1098
Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 19/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G++ V+ HG+G K E G+ E V+ KD L VP+ +A +
Sbjct: 438 DLDEGDYAVHLDHGIGIFRGFKTLESRGIGREVLVME-YKDGQLLYVPLLQAHKVSRYLG 496
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ G AR R S R ++ D+ R + + +
Sbjct: 497 AAG----HVTLHSLGGARWNRDKESARR-------------SVHSYAADMLRLQAMRQSA 539
Query: 133 YSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++A +R ++ + + I ++ S
Sbjct: 540 PGIVYPPDTAETKAFLRAFPFRDTPDQSRSTAEIRRDMESPRP 582
>gi|262198049|ref|YP_003269258.1| transcription-repair coupling factor [Haliangium ochraceum DSM
14365]
gi|262081396|gb|ACY17365.1| transcription-repair coupling factor [Haliangium ochraceum DSM
14365]
Length = 1257
Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 21/169 (12%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVA--GMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+H+V+ HG+G + + V+ G ++F + +PV + +
Sbjct: 557 SDFSQLAPGDHVVHAMHGIGLYRGLAKLPVSATGPAVDFL--HIEYRGGQFYLPVYRLGE 614
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ +E G A + Q+ K ++ E+++ +
Sbjct: 615 VSRYVGAE------------GHAPRLDKLGGVTWQKARKKASAQVKALAEELLKLYAQRA 662
Query: 127 SQPEKSY-SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+QP +Y S ++ A + + AI+ + ++ S+
Sbjct: 663 AQPGHAYPSSDHMFRE----FEATFAFEETPDQQRAIDEVLADMESERP 707
>gi|288802661|ref|ZP_06408099.1| transcription-repair coupling factor [Prevotella melaninogenica
D18]
gi|288334811|gb|EFC73248.1| transcription-repair coupling factor [Prevotella melaninogenica
D18]
Length = 1118
Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 14/165 (8%), Positives = 49/165 (29%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ +V+ G+G + AG + + + + V + I
Sbjct: 427 ELQEMEPGDFLVHVDFGIGKFAGLVRV-PAGDSYQEMIRLVYQHNDIVDVSIHSLYKISK 485
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ G+ + S + ++++ + +
Sbjct: 486 YRRGDS-----------GEPPRLSVLGSGAWDRLKERAKKRIKDIARDLIKLYAKRRREK 534
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 535 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQELKQDMESARP 576
>gi|110798653|ref|YP_694714.1| CarD family transcriptional regulator [Clostridium perfringens ATCC
13124]
gi|110673300|gb|ABG82287.1| transcriptional regulator, CarD family [Clostridium perfringens
ATCC 13124]
Length = 160
Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 9/159 (5%)
Query: 22 YPAHGVGTITEIKEQE-VAGMKLEFFVIAFDK---DKMCLKVPVGKAIDIGMRKLSEAHF 77
Y GV + +I ++ + ++ E++V++ K + I MR L
Sbjct: 2 YGTVGVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTVIKIPVDNKKISMRTLLSKED 61
Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RTDSQPEKS 132
V + + + +R E+ + SG+ + ++R ++ R +
Sbjct: 62 VNSIINSIPETETLWIDNDRQRNDEFKTMLRSGNCDDLIVLIRSIYLDKKKRKLDGKKAC 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ ++ ++A + E A + I E + I+ ++
Sbjct: 122 KGDDEIMQTAEKLINEEFAVILDIRPEEVKSYIKSHIPQ 160
>gi|225574874|ref|ZP_03783484.1| hypothetical protein RUMHYD_02952 [Blautia hydrogenotrophica DSM
10507]
gi|225037897|gb|EEG48143.1| hypothetical protein RUMHYD_02952 [Blautia hydrogenotrophica DSM
10507]
Length = 172
Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 59/173 (34%), Gaps = 12/173 (6%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQ-EVAGMKL--EFFVIAFDKDKMCLKVPVGKAIDIGM 69
F G IVY GV + EI + G ++ ++ + + +PV D+ M
Sbjct: 1 MFEKGACIVYGNTGVCRVEEIGPLSNIRGSHPGKIYYKLSPIRTGGTIYIPVDS--DMFM 58
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRR--AQEYDAKINSGDLIAIAEVVRDLHRTDS 127
R + + + + + +R + Y A + + + +++ ++ +
Sbjct: 59 RPVMTREEADALIWRMPKICERVCSSRDQRVLNEHYKASLRTHSCEELVRLIKSVYVKNR 118
Query: 128 Q-----PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSK 175
+ + ++ + + A + E+ I E I + +
Sbjct: 119 RLIKNGKKAGKTDLEYRKKAEMLLYEELGVALGIPFEEVKEYIVEQVKKMQKE 171
>gi|15644199|ref|NP_229249.1| transcription-repair coupling factor, putative [Thermotoga maritima
MSB8]
gi|4982014|gb|AAD36518.1|AE001796_10 transcription-repair coupling factor, putative [Thermotoga maritima
MSB8]
Length = 893
Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/178 (10%), Positives = 59/178 (33%), Gaps = 24/178 (13%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +K+++ G +V+ HG+ I + + ++ + + + L
Sbjct: 234 TRVEKKESLPILDVDEIEEGGLVVHREHGIAIFEGIVRLKGVLGERDYLKLKY--EDAIL 291
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ K + + R+ R W + ++ I +
Sbjct: 292 YVPIEKIDRVHKYIGDPSQV---------KLDRMNRGKWKQTLKKVRE--------DIEK 334
Query: 118 VVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+++L + +++ + + + + + ++I + +L+S+
Sbjct: 335 KIKELVELYMKRQEAQGLSLPGDPELEEKFAESFPYIETPDQQQSIEEVLSDLASEKP 392
>gi|218283272|ref|ZP_03489327.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989]
gi|218215962|gb|EEC89500.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989]
Length = 1131
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+++V+ +G+G I +++ G L++ + L VP+ + + RK
Sbjct: 463 ELEPNDYVVHEQYGIGQYVGITTRKIKGKTLDYLHV-IYNGGDELYVPLSQFQLV--RKY 519
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
V L + S + ++ K++ A +V + + +
Sbjct: 520 VSKEGVGIKLSQL----------GSNKWKKTKEKVSKKVEEIAARLVELYAKRNEDIGFA 569
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+ + + + A I+ +
Sbjct: 570 FSKDDDLQ---KEFEDAFEYEATPDQIRATEEIKREMEKPKP 608
>gi|148270474|ref|YP_001244934.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
gi|147736018|gb|ABQ47358.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
Length = 893
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/177 (10%), Positives = 56/177 (31%), Gaps = 22/177 (12%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +K+++ G +V+ HG+ + + + ++ + + + L
Sbjct: 234 TRIEKKESLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDYLKLKY--EDAVL 291
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ K + + R+ R W + ++ D+
Sbjct: 292 YVPIEKIDRVHKYIGDPSQV---------KLDRMNRGKWKQTLKKVRE-----DIEKKIR 337
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L+ + + + + + + ++I + +L+S+
Sbjct: 338 ELVELYMRRQEIQGLSLPGDP--ELEEKFAESFPYIETPDQQQSIEEVLSDLASEKP 392
>gi|224438472|ref|ZP_03659396.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG
18818]
gi|313144905|ref|ZP_07807098.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG
18818]
gi|313129936|gb|EFR47553.1| transcription-repair coupling factor [Helicobacter cinaedi CCUG
18818]
Length = 1005
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T +K GE++V+ +GVG IK+ +VAG+ +F + + + L +PV
Sbjct: 352 TKHKKPTLKLNEISQGEYVVHNDYGVGIFQGIKQAQVAGVVRDF-IEIAYQGEDKLLLPV 410
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
I G+ + + + K+ + L ++ +
Sbjct: 411 ENLNMIDRYVADS------------GQIPMLDRLGKGSFAKLKQKVRTKLLEIANGII-E 457
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
L + + + + + + +I I +LSS
Sbjct: 458 LAAKRNLLQGVKIDTDNPKLL--HFQSTCGFTLTKDQERSIKEIYADLSSGK 507
>gi|154250423|ref|YP_001411248.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
nodosum Rt17-B1]
gi|154154359|gb|ABS61591.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
Rt17-B1]
Length = 923
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 20/164 (12%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ +V+ +G+ TEIK+ E EF V+ F L VP+ + I
Sbjct: 279 DELQVGDLVVHKRYGIARFTEIKKVETISGAKEFLVLNFA--DSTLYVPIERIDLIDKYI 336
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + +L + +K S I +VRD+
Sbjct: 337 GDDVNVKLDSL-----------------KKGTWSKKVSKAKRNIETIVRDMLLIHYIRNN 379
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +S + + + + + +AI + +L S
Sbjct: 380 TTGVALPGDSELESEFAKTFPYIETEDQLKAIQDVFEDLVSGKP 423
>gi|294054382|ref|YP_003548040.1| transcription-repair coupling factor [Coraliomargarita akajimensis
DSM 45221]
gi|293613715|gb|ADE53870.1| transcription-repair coupling factor [Coraliomargarita akajimensis
DSM 45221]
Length = 1133
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 18/168 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+ +V+ HG+ + + EV G E + F M + VP+ ++
Sbjct: 446 QLLDFTELADGDPLVHLQHGICLFRGLTKLEVEGGSKEVISVEFAG-DMTIHVPLHESHL 504
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + + K + IA + +L
Sbjct: 505 LTRYVGLT-----KLTPKLGKIGGAA-----------WDKTRAAAEIATLDYAAELLNLH 548
Query: 127 SQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
+Q ++ + + + + AI+ + ++
Sbjct: 549 AQRSQAGGYEFPPDHPWQKDFEDAFPFKETPDQLRAIDATKQDMEKAE 596
>gi|170289131|ref|YP_001739369.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga sp.
RQ2]
gi|170176634|gb|ACB09686.1| DEAD/DEAH box helicase domain protein [Thermotoga sp. RQ2]
Length = 893
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/178 (10%), Positives = 59/178 (33%), Gaps = 24/178 (13%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +K+++ G +V+ HG+ + + + ++ + + + L
Sbjct: 234 TRIEKKESLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDYLKLKY--EDAVL 291
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ K + + R+ R W + ++ I +
Sbjct: 292 YVPIEKIDRVHKYIGDPSQV---------KLDRMNRGKWKQTLKKVRE--------DIEK 334
Query: 118 VVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R+L + +++ + + + + + ++I + +L+S+
Sbjct: 335 KIRELVELYMKRQEAQGLSLPGDPELEEKFAESFPYIETPDQQQSIEEVMSDLASEKP 392
>gi|291518338|emb|CBK73559.1| Transcription-repair coupling factor (superfamily II helicase)
[Butyrivibrio fibrisolvens 16/4]
Length = 723
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 14/165 (8%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ G+++V+ +G+G ++ E+ + ++ I + K L V + I
Sbjct: 495 SSFSDLHVGDYVVHENYGLGVYKGTEQMELDRVIRDYIKIEYAK-GSNLYVLTNQLDQIQ 553
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
S + L + + K+ S + E+V +
Sbjct: 554 KY--SGPDGKKPKLNSLGAGT--------QEWTRTKQKVQSAVGVVAKELVDLYALRQNT 603
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y +++ + + AI+ ++ ++ S
Sbjct: 604 DGFIYGPDTVWQ---KEFEESFPYEETEGQLSAIDAVKSDMESSK 645
>gi|301335326|ref|ZP_07223570.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1]
gi|301336312|ref|ZP_07224514.1| transcription-repair coupling factor [Chlamydia muridarum
MopnTet14]
Length = 1081
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + L VP ++ I +
Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYADR-ARLYVPSDQSYLISRYVGAS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR++E K + L + ++Q + S
Sbjct: 493 EKAPD--LHHLNGAKW-------RRSRELSEKS-------VILYAEKLIQMEAQRSTANS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI+ I ++ S
Sbjct: 537 FIYPPHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDK 576
>gi|208435421|ref|YP_002267087.1| transcription-repair coupling factor [Helicobacter pylori G27]
gi|208433350|gb|ACI28221.1| transcription-repair coupling factor [Helicobacter pylori G27]
Length = 999
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + R + K+ + + E+ +
Sbjct: 409 NLHLIARYVAQSDSVPIK----------------DRLGKGSFLKLKAKVRTKLLEIASKI 452
Query: 123 HRTDSQPEKSYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ ++ A + + +AI I +LSSK
Sbjct: 453 IELAAERNLILGKKMDVHLAELEIFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|283779708|ref|YP_003370463.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
gi|283438161|gb|ADB16603.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
Length = 1087
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 16/169 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K R G+ +V+ AHG+G IK E E I F + VP +
Sbjct: 421 KAIDSFLDLREGDLVVHLAHGIGRFAGIKLLERGETSEEHLEIEF-DGGTRIYVPAVRID 479
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ A + + + S E++
Sbjct: 480 LVQKYVGGTKTRPSLA------------KIGGKTWLKQKKAAESAVADLAVEMLELQAMR 527
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++P ++S ++ ++ + +I I+ ++
Sbjct: 528 SARPGIAFSADSEWQ---KEFDNSFPFQETVDQLTSIASIKADMQRARP 573
>gi|254458302|ref|ZP_05071728.1| transcription-repair coupling factor [Campylobacterales bacterium
GD 1]
gi|207085138|gb|EDZ62424.1| transcription-repair coupling factor [Campylobacterales bacterium
GD 1]
Length = 996
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
M + G+++V+ +GVG +I++ E+ G +F VI + + +PV I
Sbjct: 351 SIMLDDLKAGDYVVHEDYGVGIFEKIEQTEILGGIKDFIVIKYVG-DDKILLPVENLDFI 409
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
S G + + + K+ + ++V +
Sbjct: 410 DRYIASG------------GSTPMLDRLGKGSFGKLKEKVKKRLMEIAGQIVNTAAAREL 457
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + + L +E + + ++++ I + S
Sbjct: 458 IKAPKIT---IAKKELQEFQKESGFDYTDDQTQSVDEIITQMQSG 499
>gi|153814527|ref|ZP_01967195.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
gi|317500570|ref|ZP_07958791.1| transcription-repair coupling factor [Lachnospiraceae bacterium
8_1_57FAA]
gi|145848021|gb|EDK24939.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
gi|316898003|gb|EFV20053.1| transcription-repair coupling factor [Lachnospiraceae bacterium
8_1_57FAA]
Length = 1115
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R + G+++V+ HG+G I++ EV + ++ I + L +PV +
Sbjct: 438 RIQDFAELKPGDYVVHENHGIGVYKGIEKIEVEKIVKDYMKI-VYAEGGVLYIPVAQMDL 496
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + K + + + + +++ I ++V
Sbjct: 497 IQKYAGA------------DAKKPRLNKLGTIQWGKTKSQVKKAVQIVAKDLVELYAVRQ 544
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y +++ M + + +AI + ++ SK
Sbjct: 545 QSEGFVYGPDTVWQKEFEEMFP---FEETDDQLQAIEDTKHDMESKK 588
>gi|160902853|ref|YP_001568434.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
SJ95]
gi|160360497|gb|ABX32111.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
Length = 974
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 26/180 (14%)
Query: 4 QQKRDAMRQGFRT---------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ K++ R + G+ +V+ +G+G + + E EF V D
Sbjct: 302 KSKKEDKRLEYIPLLDWEDLNDGDLVVHEDYGIGIYHGVNKVETLLGLREF-VTLEYSDN 360
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
+ VPVG+ + +L S+ + K+
Sbjct: 361 SRVYVPVGRLDKLSKYIGDPESVKISSLN-------------SKSWKNTKQKVKEEIKQK 407
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
I E+ + ++Q E + V + + ++I + +L S+
Sbjct: 408 IEELQKIYALRENQRGIQLFGDPELE---EKFKETFPYVETPDQEKSIKEVMRDLESERP 464
>gi|167757261|ref|ZP_02429388.1| hypothetical protein CLORAM_02811 [Clostridium ramosum DSM 1402]
gi|237735655|ref|ZP_04566136.1| transcriptional regulator [Mollicutes bacterium D7]
gi|167703436|gb|EDS18015.1| hypothetical protein CLORAM_02811 [Clostridium ramosum DSM 1402]
gi|229381400|gb|EEO31491.1| transcriptional regulator [Coprobacillus sp. D7]
Length = 186
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 11/166 (6%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKL--EFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ I+Y V I I + +++ + VP+ + MR
Sbjct: 20 YEKGDLIIYGNQSVCRIENIGVISIGKQPNSRKYYTLNPIFMDGKTYVPIDT--QVYMRH 77
Query: 72 LSEAHFVERALKLVRG--KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD--- 126
L +ER L K ++ + Y I+ + +++ +L
Sbjct: 78 LISIEELERLLTRHPKVQKEIIENQNLRQLTDYYKETISQYTCDGLIQLICNLQAKQKNL 137
Query: 127 --SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
S ++ + + A + + +E AAV +I + + IE +
Sbjct: 138 LLQNKRLSQTDERYKKEAEDLLHQEFAAVLNIPKEAVMAYIENKIK 183
>gi|210135730|ref|YP_002302169.1| transcription-repair coupling factor [Helicobacter pylori P12]
gi|210133698|gb|ACJ08689.1| transcription-repair coupling factor [Helicobacter pylori P12]
Length = 999
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPAK------------DRLGKGSFLKLKAKVRTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|297171094|gb|ADI22106.1| transcription-repair coupling factor (superfamily II helicase)
[uncultured Planctomycetales bacterium HF0200_11L05]
Length = 530
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 23/169 (13%)
Query: 3 FQQKRDAMRQGF-----RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+ K ++ + + + +V+ HG+G +K + + E I ++ +
Sbjct: 332 SKIKPIQPKKEYSYQVPQINDRVVHLFHGIGIFKGLKNIKTKNISNECIEIE-YRNSSKV 390
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ + E ++ S++ + AE
Sbjct: 391 FVPIESMHLVSKYFGPEEINIDEL--------------GSKKWERKKTLAIKKTFDTAAE 436
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166
++ + +S+ K Y Q+ + RE + + + I IE
Sbjct: 437 LLNTQAKRNSRKGKKY---QIPKKEYVEFCREFQFIETQDQKNTILEIE 482
>gi|32490848|ref|NP_871102.1| hypothetical protein WGLp099 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166054|dbj|BAC24245.1| mfd [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 685
Score = 76.4 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 14/168 (8%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
K + F +G+ I++ HG+G K E +G+K E+ VI + + L +P
Sbjct: 10 KNFSSDIEFISGDFIIHIDHGIGKYIGTKFIETSGIKNEYMVIQYA-ENDILYLPFTSLH 68
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
I K + L + K + K + IA + D
Sbjct: 69 LISKYKKNNYDSNLIILDKLGSDTWKKYS-----------KKIIKKINDIAVEILDNASE 117
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ E + + E + + +AI + ++ S
Sbjct: 118 RLSKKGFSFELKFNK--YKLFCNECNFDLTQDQNKAILEVIDDMKKSS 163
>gi|332674360|gb|AEE71177.1| transcription-repair coupling factor [Helicobacter pylori 83]
Length = 999
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L+ IA + +L
Sbjct: 409 NLHLIARYVAQSDSVPTK------------DRLGKGSFLKLKAKVKTK-LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEIFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|152991203|ref|YP_001356925.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
gi|151423064|dbj|BAF70568.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
Length = 976
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 17/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ + + G ++V+ HG+G +K E+ G K +F V L VPV
Sbjct: 331 RAKPPSIVIDELQPGSYVVHEQHGIGIFKGLKAIEILGAKRDF-VELEYAGGDKLLVPVE 389
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
+ + + + AK+ + + E+ D+
Sbjct: 390 NLDVLSRY--IADSGSVAVVDKLGS--------------QSFAKLKAKVKERLFEIAADI 433
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +Q E + ++ + + + + AI+ I LSS
Sbjct: 434 VKIAAQRELTPGKKIITPPDITLFQSHAGFEYTEDQKRAIDTILQRLSSGK 484
>gi|242309312|ref|ZP_04808467.1| transcription-repair coupling factor [Helicobacter pullorum MIT
98-5489]
gi|239524353|gb|EEQ64219.1| transcription-repair coupling factor [Helicobacter pullorum MIT
98-5489]
Length = 1008
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 20/175 (11%)
Query: 2 TFQQKRDAMR---QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
T Q+K+ A + + G+++V+ +GV I + + G +F + + + L
Sbjct: 358 TKQKKKFANKILIDELKVGDYVVHIDYGVALFNGIVQANIFGATRDFIELKYLGED-KLL 416
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+PV I + G + + K+ L IA
Sbjct: 417 LPVENLDRIDRY-------------IADGGIPILDKLGKGSFARLKEKVKEK-LFVIANG 462
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ L + + + + + + + + +AI I +LSS
Sbjct: 463 IIALAAKRELIDGIVLDTN--KEEILIFQNQSGFIYTKDQSKAIEEIFKDLSSGR 515
>gi|266625229|ref|ZP_06118164.1| putative transcriptional regulator [Clostridium hathewayi DSM
13479]
gi|288862869|gb|EFC95167.1| putative transcriptional regulator [Clostridium hathewayi DSM
13479]
Length = 146
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 47/145 (32%), Gaps = 7/145 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE--VAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
F +++V+ HG+ I I + +A ++ + + + +R
Sbjct: 1 MFSVNDYVVFGNHGICVIKAIGPLDLGIAERGRLYYTLEPLYTQKNTIYTPVDSEKNSLR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
+ + + V RR + Y + D + ++++ L+ +
Sbjct: 61 RAITREEALELIDRIPQVETVWVPDEKRREERYREIMRQNDCMGWMQIIKTLYLKKQKRL 120
Query: 129 ---PEKSYSERQLYESALNRMVREI 150
+ + + + A + + E
Sbjct: 121 AEGRKNTARDELYLKLAEDFLYGEF 145
>gi|315585955|gb|ADU40336.1| transcription-repair coupling factor [Helicobacter pylori 35A]
Length = 999
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L+ IA + +L
Sbjct: 409 NLHLIARYVAQSDSVPTK------------DRLGKGSFLKLKAKVKTK-LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEIFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|166154965|ref|YP_001653220.1| transcription-repair coupling factor [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|165930953|emb|CAP06515.1| transcription-repair coupling factor [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 1079
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGAS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR++E ++ L + ++Q + S
Sbjct: 493 EKAPD--LHHLNGAKW-------RRSRELSE-------NSVILYAEKLIQMEAQRSTANS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI+ I ++ S
Sbjct: 537 FIYPPHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDK 576
>gi|166154090|ref|YP_001654208.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu]
gi|301335295|ref|ZP_07223539.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1]
gi|165930078|emb|CAP03561.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu]
Length = 1079
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGAS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR++E ++ L + ++Q + S
Sbjct: 493 EKAPD--LHHLNGAKW-------RRSRELSE-------NSVILYAEKLIQMEAQRSTANS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI+ I ++ S
Sbjct: 537 FIYPPHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDK 576
>gi|239618514|ref|YP_002941836.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1]
gi|239507345|gb|ACR80832.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1]
Length = 1018
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 17/163 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G+ +V+ +G+G I++ E+ ++ + VP+ + +
Sbjct: 352 SELEEGDFVVHIEYGIGKFLGIRKINGVLGTREYL-TIEYREGSKIYVPIERLDRVHKYV 410
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ L +RG A ++ ++ I E+ +
Sbjct: 411 GDTDNIQ---LNSLRGNA----------WKKRKKRVEKEVKERIKELALLYGTREHLRGL 457
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S E A R + + + +AI + +L+ +
Sbjct: 458 SLKGDPTLEDA---FKRSFPHLETEDQAKAIEEVLDDLADEKP 497
>gi|255349143|ref|ZP_05381150.1| transcription-repair coupling factor [Chlamydia trachomatis 70]
gi|255503680|ref|ZP_05382070.1| transcription-repair coupling factor [Chlamydia trachomatis 70s]
gi|255507360|ref|ZP_05382999.1| transcription-repair coupling factor [Chlamydia trachomatis
D(s)2923]
gi|289525792|emb|CBJ15273.1| transcription-repair coupling factor [Chlamydia trachomatis
Sweden2]
gi|296435368|gb|ADH17546.1| transcription-repair coupling factor [Chlamydia trachomatis E/150]
gi|296439085|gb|ADH21238.1| transcription-repair coupling factor [Chlamydia trachomatis
E/11023]
Length = 1079
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGAS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR++E ++ L + ++Q + S
Sbjct: 493 EKAPD--LHHLNGAKW-------RRSRELSE-------NSVILYAEKLIQMEAQRSTANS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI+ I ++ S
Sbjct: 537 FIYPPHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDK 576
>gi|323488890|ref|ZP_08094129.1| transcriptional regulator, CarD family protein [Planococcus
donghaensis MPA1U2]
gi|323397453|gb|EGA90260.1| transcriptional regulator, CarD family protein [Planococcus
donghaensis MPA1U2]
Length = 169
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 67/169 (39%), Gaps = 7/169 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+HI+Y HG+ I +I + V+ + +++ + ++ + + M KL
Sbjct: 1 MFAIGDHIIYSTHGLCKINDIYDMTVSEVTKKYYQLQPLENTLVTISTPVDNDKVVMLKL 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-----S 127
+ +++ + + +AQ KI SGD + IA V+ L R
Sbjct: 61 LQREEALAIIEVFKQPETESEVPQNLKAQ--PKKIQSGDRMQIAGVINGLLRKKFDTQIQ 118
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
+ + L + + +E+A + S E +I ++ + +
Sbjct: 119 KESLYEHDYNLLNNTQIILFKELAHALNTSFEEINKMINDLITDEQPQA 167
>gi|317010243|gb|ADU80823.1| transcription-repair coupling factor [Helicobacter pylori India7]
Length = 999
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L+ IA + +L
Sbjct: 409 NLHLIARYVAQSDSVPIK------------DRLGKGSFLKLKAKVRTK-LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDVHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|282859198|ref|ZP_06268320.1| transcription-repair coupling factor [Prevotella bivia JCVIHMP010]
gi|282588017|gb|EFB93200.1| transcription-repair coupling factor [Prevotella bivia JCVIHMP010]
Length = 1169
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 14/165 (8%), Positives = 50/165 (30%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ +V+ G+G + + E + ++ + + V + I
Sbjct: 481 ELQEMEPGDFLVHVDFGIGKFAGLVRVPMQNSYQEMIRL-IYQNNVIVDVSIHSLYKISK 539
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ ++ G+ + S K ++++ + +
Sbjct: 540 YRRADT-----------GEPPRLSVLGSGAWDRLKEKAKKRIKDIARDLIKLYAKRRHEK 588
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 589 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQDLKQDMESARP 630
>gi|307564503|ref|ZP_07627044.1| transcription-repair coupling factor [Prevotella amnii CRIS 21A-A]
gi|307346863|gb|EFN92159.1| transcription-repair coupling factor [Prevotella amnii CRIS 21A-A]
Length = 1178
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/165 (9%), Positives = 52/165 (31%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+++V+ G+G + V E + F ++ + + + + I
Sbjct: 481 ELQEMEPGDYLVHIDLGIGKFAGLVRVPVKNSYQEMIRLVF-QNNVIVDISIHSLYKISK 539
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
K ++ + + S + K ++++ + +
Sbjct: 540 YKRADTD-----------EPPRLSVLGSGAWERLKEKAKKRIKDIARDLIKLYAKRRHEK 588
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 589 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQDLKQDMESSQP 630
>gi|110801919|ref|YP_697579.1| CarD family transcriptional regulator [Clostridium perfringens
SM101]
gi|110682420|gb|ABG85790.1| transcriptional regulator, CarD family [Clostridium perfringens
SM101]
Length = 160
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 9/159 (5%)
Query: 22 YPAHGVGTITEIKEQE-VAGMKLEFFVIAFDK---DKMCLKVPVGKAIDIGMRKLSEAHF 77
Y GV + +I ++ + ++ E++V++ K + I MR L
Sbjct: 2 YGTVGVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTVIKIPVDNKKISMRTLLSKED 61
Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RTDSQPEKS 132
V + + + +R E+ + SG+ + ++R ++ R +
Sbjct: 62 VNSIINSIPETETLWIDNDRQRNDEFKTILRSGNCDDLIVLIRSIYLDKKKRKLDGKKAC 121
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ ++ ++A + E A + I E + I+ ++
Sbjct: 122 KGDDEIMQTAEKLIDEEFAVILDIRPEEVKSYIKSHIPQ 160
>gi|331089329|ref|ZP_08338230.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405510|gb|EGG85042.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 712
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R + G+++V+ HG+G I++ EV + ++ I + L +PV +
Sbjct: 438 RIQDFAELKPGDYVVHENHGIGVYKGIEKIEVEKIVKDYMKI-VYAEGGVLYIPVAQMDL 496
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + K + + + + +++ I ++V
Sbjct: 497 IQKYAGA------------DAKKPRLNKLGTIQWGKTKSQVKKAVQIVAKDLVELYAVRQ 544
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y +++ M + + +AI + ++ SK
Sbjct: 545 QSEGFVYGPDTVWQKEFEEMFP---FEETDDQLQAIEDTKHDMESKK 588
>gi|313848365|emb|CBY17369.1| putative transcription-repair coupling factor [Chlamydophila
psittaci RD1]
Length = 1085
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G ++++ ++ ++ V+ + K L VP +A I
Sbjct: 436 PGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGVS 494
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G +R+++ K + L + ++Q + S
Sbjct: 495 DKTPD--LHNLNGSKW-------KRSRDLSEKS-------LILYAEKLLQLEAQRSTTPS 538
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI I ++ S
Sbjct: 539 FIYPPHGEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDK 578
>gi|15834748|ref|NP_296507.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
gi|270284915|ref|ZP_06194309.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
gi|270288942|ref|ZP_06195244.1| transcription-repair coupling factor [Chlamydia muridarum Weiss]
gi|7190159|gb|AAF39002.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
Length = 1080
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 434 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGAS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR++E K + L + ++Q + S
Sbjct: 493 EKAPD--LHHLNGAKW-------RRSRELSEKS-------VILYAEKLIQMEAQRSTANS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI+ I ++ S
Sbjct: 537 FIYPTHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDK 576
>gi|329943213|ref|ZP_08291987.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
gi|332287793|ref|YP_004422694.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
gi|325507232|gb|ADZ18870.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
gi|328814760|gb|EGF84750.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
gi|328915051|gb|AEB55884.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
Length = 1083
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G ++++ ++ ++ V+ + K L VP +A I
Sbjct: 434 PGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGVS 492
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G +R+++ K + L + ++Q + S
Sbjct: 493 DKTPD--LHNLNGSKW-------KRSRDLSEKS-------LILYAEKLLQLEAQRSTTPS 536
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI I ++ S
Sbjct: 537 FIYPPHGEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDK 576
>gi|223940292|ref|ZP_03632150.1| transcription-repair coupling factor [bacterium Ellin514]
gi|223891059|gb|EEF57562.1| transcription-repair coupling factor [bacterium Ellin514]
Length = 1212
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/191 (13%), Positives = 56/191 (29%), Gaps = 33/191 (17%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV---------------AGMKL--- 43
+ D G+++V+ HG+G +K V +G +
Sbjct: 482 ATRSALDIDFTELEEGDYVVHLQHGIGRYQGLKVLPVTLGRKGVDPNATPADSGQECLVI 541
Query: 44 EFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEY 103
E+ + L VPV +A + + + T+ R +
Sbjct: 542 EYAASDPQQPAPKLYVPVTEAHLVSKYVGAGKARPQ------------LNTIGGTRWAKA 589
Query: 104 DAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN 163
A+ +E++ +SQP S+ ++ + + AIN
Sbjct: 590 KAQAERAVRDVASELLAIQAARESQPGYSFKADTPWQR---EFESAFLYEETRDQMRAIN 646
Query: 164 LIEVNLSSKSS 174
+ ++
Sbjct: 647 ETKGDMERPKP 657
>gi|217031702|ref|ZP_03437206.1| hypothetical protein HPB128_155g15 [Helicobacter pylori B128]
gi|298737160|ref|YP_003729690.1| transcription-repair coupling factor [Helicobacter pylori B8]
gi|216946549|gb|EEC25149.1| hypothetical protein HPB128_155g15 [Helicobacter pylori B128]
gi|298356354|emb|CBI67226.1| transcription-repair coupling factor (superfamily II helicase)
[Helicobacter pylori B8]
Length = 999
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L+ IA + +L
Sbjct: 409 NLHLIARYVAQSDSVPAK------------DRLGKGSFLKLKAKVRTK-LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMDVHLAE--LEVFKSQAGFEYTSDQEKAIAEISKDLSSHR 504
>gi|34557604|ref|NP_907419.1| transcription-repair coupling factor [Wolinella succinogenes DSM
1740]
gi|34483321|emb|CAE10319.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Wolinella succinogenes]
Length = 994
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+++ R G+++V+ +G+G I ++ V G +F ++ + + L +PV
Sbjct: 346 AKKRRPTFAIDELRVGDYVVHKDYGIGIFKGIIQERVLGALRDFILL-AYQGEDRLLLPV 404
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
I R ++++ + +L +G + KI + L+ IA +
Sbjct: 405 ENLDYI-DRYVADSGSIPSVDRLGKGS-----------FAKLKEKIRTK-LLEIASEIVA 451
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
L E E V + + ++I I +L
Sbjct: 452 LAAKRELIEGRAIRTDFPEI--EIFQHSSGFVYTSDQEKSIREIFSDLEGGK 501
>gi|317013364|gb|ADU83972.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
Lithuania75]
Length = 999
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L+ IA + +L
Sbjct: 409 NLHLIARYVAQSDSVPIK------------DRLGKGSFLKLKAKVKTK-LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMDVHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSHR 504
>gi|217033838|ref|ZP_03439263.1| hypothetical protein HP9810_877g42 [Helicobacter pylori 98-10]
gi|216943736|gb|EEC23179.1| hypothetical protein HP9810_877g42 [Helicobacter pylori 98-10]
Length = 999
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSGSVPIK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS+
Sbjct: 456 AAERNLILGKKMDTHLAE--LEIFKSHAGFEYTSDQEKAIAEISKDLSSQR 504
>gi|311745141|ref|ZP_07718926.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
gi|126577659|gb|EAZ81879.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
Length = 1117
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/176 (11%), Positives = 55/176 (31%), Gaps = 21/176 (11%)
Query: 3 FQQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
+ + + + G++IV+ +GVG +++ +V G E + F D + +
Sbjct: 423 ASKSKALTIKELKALHPGDYIVHVDYGVGRFAGLEKVDVNGKLQEAVRLVFRDDDL---L 479
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
V + K S ++ + I + ++
Sbjct: 480 YVNIHSLHKISKYSGQEGTMPSMSKLGSPE--------------WDNKKKRVKIKVKDIA 525
Query: 120 RDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+DL ++ + +S L + ++ + A ++ ++
Sbjct: 526 KDLIALYAKRRSANGYPFTKDSVLQVELESSFIYEDTPDQALATEDVKADMEKSYP 581
>gi|317179751|dbj|BAJ57539.1| transcription-repair coupling factor [Helicobacter pylori F30]
Length = 999
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPTK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEIFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|62185446|ref|YP_220231.1| putative transcription-repair coupling factor [Chlamydophila
abortus S26/3]
gi|62148513|emb|CAH64284.1| putative transcription-repair coupling factor [Chlamydophila
abortus S26/3]
Length = 1085
Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G ++++ ++ ++ V+ + K L VP +A I
Sbjct: 436 PGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGIS 494
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G +R+++ K + L + ++Q + +
Sbjct: 495 DKTPD--LHNLNGSKW-------KRSRDLSEKS-------LVLYAEKLLQLEAQRSTTPA 538
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI I ++ S
Sbjct: 539 FIYPPHGEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDK 578
>gi|15646148|ref|NP_208332.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
26695]
gi|3914010|sp|O26066|MFD_HELPY RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|2314723|gb|AAD08581.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
26695]
Length = 999
Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + R + K+ + + E+ +
Sbjct: 409 NLHLIARYVAQSDSVPAK----------------DRLGKGSFLKLKAKVRTKLLEIASKI 452
Query: 123 HRTDSQPEKSYSERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ ++ A + + +AI I +LSS
Sbjct: 453 IELAAERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSHR 504
>gi|189218310|ref|YP_001938952.1| transcription-repair coupling factor mfd (superfamily II helicase)
[Methylacidiphilum infernorum V4]
gi|189185168|gb|ACD82353.1| Transcription-repair coupling factor mfd (superfamily II helicase)
[Methylacidiphilum infernorum V4]
Length = 1060
Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 18/160 (11%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
+ G+ +V+ G+ IK E G E V + L VP+ +A I
Sbjct: 411 KEGDIVVHLQKGICKFKGIKTIE--GTNTE-MVELEFDQQAKLYVPIDQAHLIARYIGGT 467
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
K ++ R + ++++ + ++
Sbjct: 468 K------------KLPKLDSLGGNRWIKAKRAAQKAVTDLAEKLLKINAEREVLEGFAFP 515
Query: 135 ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + +AI + ++ SK
Sbjct: 516 QDDQWQ---KEFEEAFIYEETPDQLKAIEETKKDMESKRP 552
>gi|317182774|dbj|BAJ60558.1| transcription-repair coupling factor [Helicobacter pylori F57]
Length = 999
Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPIK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|281412781|ref|YP_003346860.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
RKU-10]
gi|281373884|gb|ADA67446.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
RKU-10]
Length = 893
Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/178 (10%), Positives = 59/178 (33%), Gaps = 24/178 (13%)
Query: 2 TFQQKRDA----MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
T +K+++ G +V+ HG+ + + + ++ + + + L
Sbjct: 234 TRIEKKESLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDYLKLKY--EDAVL 291
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
VP+ K + + R+ R W + ++ I +
Sbjct: 292 YVPIEKIDRVHKYIGDPSQV---------KLDRMNRGKWKQTLKKVRE--------DIEK 334
Query: 118 VVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+R+L + +++ + + + + + ++I + +L+S+
Sbjct: 335 KIRELVELYMKRQEAQGLSLPGDPELEEKFAESFPYIETPDQQQSIEEVLYDLASEKP 392
>gi|207091918|ref|ZP_03239705.1| transcription-repair coupling factor (trcF) [Helicobacter pylori
HPKX_438_AG0C1]
Length = 911
Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 262 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 320
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L+ IA + +L
Sbjct: 321 NLHLIARYVAQSDSVPAK------------DRLGKGSFLKLKAKVRTK-LLEIAGKIIEL 367
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 368 AAERNLILGKKMDVHLAE--LEVFKSHAGFEYTSDQEKAIAEISRDLSSKR 416
>gi|260591441|ref|ZP_05856899.1| transcription-repair coupling factor [Prevotella veroralis F0319]
gi|260536633|gb|EEX19250.1| transcription-repair coupling factor [Prevotella veroralis F0319]
Length = 1187
Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 13/165 (7%), Positives = 47/165 (28%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ +V+ G+G + E + + + V + I
Sbjct: 488 ELQEMEPGDFLVHVDFGIGKFAGLVRVPTGDSYQE-VIRLVYQHNDIVDVSIHSLYKISK 546
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ + G+ + + S + ++++ + +
Sbjct: 547 YRRGNS-----------GEPPLLSVLGSGAWDRLKERAKKRIKDLARDLIKLYAKRRREK 595
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++S + + + ++ + +A ++ ++ S
Sbjct: 596 GFAFSPDSFMQ---HELEASFLYEDTPDQLKATQELKQDMESARP 637
>gi|108563915|ref|YP_628231.1| transcription-repair coupling factor [Helicobacter pylori HPAG1]
gi|107837688|gb|ABF85557.1| transcription-repair coupling factor [Helicobacter pylori HPAG1]
Length = 999
Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L+ IA + +L
Sbjct: 409 NLHLIARYVAQSDSVPAK------------DRLGKGSFLKLKAKVRTK-LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI+ I +LSS
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAISEISKDLSSHR 504
>gi|222100017|ref|YP_002534585.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
4359]
gi|221572407|gb|ACM23219.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
4359]
Length = 895
Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 49/167 (29%), Gaps = 20/167 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
GE +V+ HG+ + + + ++ + + + L VPV K +
Sbjct: 245 VDIDEIEEGELVVHKEHGIAIFEGMIRLKSVLGERDYLKLKY--EDAVLYVPVEKIDRVH 302
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + R + K+ + E+V + +
Sbjct: 303 RYIGDPSQVKLD-------------RLNRGRWKRTLKKVREDIEKRVRELVELYLKREEV 349
Query: 129 P-EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ +L + + + + + I + +LSS+
Sbjct: 350 RGTLLPGDPEL----EEKFAETFPYIETPDQQKCIEEVLTDLSSEKP 392
>gi|317178272|dbj|BAJ56061.1| transcription-repair coupling factor [Helicobacter pylori F16]
Length = 999
Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPIK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|313676238|ref|YP_004054234.1| transcription-repair coupling factor [Marivirga tractuosa DSM 4126]
gi|312942936|gb|ADR22126.1| transcription-repair coupling factor [Marivirga tractuosa DSM 4126]
Length = 1122
Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 15/172 (8%), Positives = 51/172 (29%), Gaps = 16/172 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ + + G+ + + +GVG + + + G K E + +D L V +
Sbjct: 426 SKAITIRELKNLQPGDFVTHIDYGVGRFAGMDKVDNNGKKQE-VIRLIYRDNDLLYVSIH 484
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I S ++ + + K +++
Sbjct: 485 ALHKISKY--SGKEGSTPSISKLGSPE----------WENKKKKAKKQVKDIAKDLIELY 532
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S P + ++ ++ + ++ + ++ ++ ++
Sbjct: 533 AKRKSAPGFACNDDSFLQA---ELESSFIYEDTPDQAKSTADVKSDMEQPHP 581
>gi|256372365|ref|YP_003110189.1| transcription-repair coupling factor [Acidimicrobium ferrooxidans
DSM 10331]
gi|256008949|gb|ACU54516.1| transcription-repair coupling factor [Acidimicrobium ferrooxidans
DSM 10331]
Length = 1131
Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 18/158 (11%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G +V+ A+GV + Q V G+ E+ + F + +P + SE
Sbjct: 464 GSFVVHEAYGVARYRGLVRQVVDGVSREYLELEFASAD-RIFLPFEHLALVAPYVGSEEP 522
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
L +RG ++ +RRA + +A+ + L++ S
Sbjct: 523 R----LTRLRGGDWQRQVHRARRAAQ-----------EVAQELVVLYQRRLAATGSSITP 567
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L+ + + I + +L+
Sbjct: 568 DPV--LLSEFAERFPYELTRDQERTIAEVLADLAKPVP 603
>gi|330443885|ref|YP_004376871.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
gi|328806995|gb|AEB41168.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
Length = 1070
Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G ++++ ++ ++ VI + L VP +A I +
Sbjct: 420 PGETVVHLHNGIGKFVGVEKKPNHLNIETDYLVIEYADH-AKLYVPSDQAYLISRYVGAS 478
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
E + G +R++E K + L + ++Q + +
Sbjct: 479 DTPPE--FHNLNGSKW-------KRSRELTEKS-------LVAYAEKLLQLEAQRSTTPA 522
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI I ++ S+
Sbjct: 523 FVHPPHGEEVIKFAETFPYEETPDQLKAIEQIYEDMMSEK 562
>gi|154483284|ref|ZP_02025732.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC
27560]
gi|149735794|gb|EDM51680.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC
27560]
Length = 1168
Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G+++V+ HG+G I++ EV + ++ I + K L V +
Sbjct: 493 NISSFTDLNIGDYVVHENHGLGVYRGIEKIEVDHIVKDYIKIEYAK-GSNLYVLATQLDM 551
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I S A K T+ + ++ ++ E+V+ +
Sbjct: 552 IQKYADSTA------------KPPKLNTLGGQEWKKTKTRVKKAVADIAKELVQLYAIRE 599
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S ++ M + + AI+ ++ ++ S
Sbjct: 600 NSNGYQFSPDTEWQKEFEEMFP---FEETDDQLNAISEVKKDMESTK 643
>gi|308062834|gb|ADO04722.1| transcription-repair coupling factor [Helicobacter pylori Cuz20]
Length = 999
Score = 74.8 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPIK------------DQLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ L E L + + +AI I +LSSK
Sbjct: 456 AAERDLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|308064333|gb|ADO06220.1| transcription-repair coupling factor [Helicobacter pylori Sat464]
Length = 999
Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPTK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|297380724|gb|ADI35611.1| transcription-repair coupling factor [Helicobacter pylori v225d]
Length = 999
Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPVK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|291458882|ref|ZP_06598272.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418136|gb|EFE91855.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078
str. F0262]
Length = 175
Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 7/172 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
F++G ++VY GV IT I + G+ + ++++ K + + I MR
Sbjct: 1 MFQSGTYVVYGCKGVHKITGITTLNLEGIPKDKNYYILEPLKKAQAAIYAPVEEMRIRMR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD---- 126
+ E L+ + + R + I S + + V++ L
Sbjct: 61 PVMSREEAEHFLQSMGLILPLSIRNPRAREEACRECIRSCEPDELLRVIKTLQHRKTERA 120
Query: 127 -SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
+ + + E A + + E++ S+ + I +S + E
Sbjct: 121 RQGKKLTLCDLHYMEQAESTLYEELSLSLSLDRSLIEDKIRRFVSEEEEVRE 172
>gi|308183706|ref|YP_003927833.1| transcription-repair coupling factor [Helicobacter pylori PeCan4]
gi|308065891|gb|ADO07783.1| transcription-repair coupling factor [Helicobacter pylori PeCan4]
Length = 1001
Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNPGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L+ IA + +L
Sbjct: 409 NLHLIARYVAQSDSVPAK------------DRLGKGSFLKLKAKVRTK-LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMDVHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSHR 504
>gi|197303581|ref|ZP_03168619.1| hypothetical protein RUMLAC_02307 [Ruminococcus lactaris ATCC
29176]
gi|197297315|gb|EDY31877.1| hypothetical protein RUMLAC_02307 [Ruminococcus lactaris ATCC
29176]
Length = 162
Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 6/159 (3%)
Query: 17 GEHIVYPAHGVGTITEIKEQEV---AGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +VY G+ + EI + K + + + + K VP + +R+
Sbjct: 5 GDAVVYKCRGMYKVEEIGTLDFSFADSKKKYYTLQSIEDAKDKAYVPTD--DEKNIRRPV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP-EKS 132
+ L V + R QEY I+ V+R L+ + +
Sbjct: 63 SFEEAKHLLDCVDKIEVLSVKNEKFREQEYKDCISDFKPENWVRVLRTLYTRTKRRGSMT 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+++ + + E+ V IS E L+ NL+
Sbjct: 123 SMDKKYQMLLEHALYSEMQYVLGISAAELSRLLTSNLAK 161
>gi|188528343|ref|YP_001911030.1| transcription-repair coupling factor [Helicobacter pylori Shi470]
gi|188144583|gb|ACD49000.1| transcription-repair coupling factor [Helicobacter pylori Shi470]
Length = 999
Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPIK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|187918482|ref|YP_001884045.1| transcription-repair coupling factor [Borrelia hermsii DAH]
gi|119861330|gb|AAX17125.1| transcription-repair coupling factor [Borrelia hermsii DAH]
Length = 1122
Score = 74.4 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 18/171 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ ++ I + L +P+
Sbjct: 448 SSRTKPIDSFIEVEKNSHVVHINHGIGIFKQIKRIKTSLLEKDYIEIEYAD-NEKLFIPI 506
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I R + + + K+ + K + I +
Sbjct: 507 EQTHLI-QRYIGNENQNIKLDKISS---------------KTWEKKKANAKKRIDAIADQ 550
Query: 122 LHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSS 171
L S E + + ++ E A + + AI+ I+ ++ S
Sbjct: 551 LVSLYSARESTKGFQYPQDNEWQLLFESEFAYDETPDQLTAISEIKQDMMS 601
>gi|301059200|ref|ZP_07200138.1| transcription-repair coupling factor [delta proteobacterium NaphS2]
gi|300446690|gb|EFK10517.1| transcription-repair coupling factor [delta proteobacterium NaphS2]
Length = 1180
Score = 74.1 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 53/176 (30%), Gaps = 21/176 (11%)
Query: 3 FQQKRD-----AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K + + G+ +V+ HG+G + E+A +F VI K L
Sbjct: 499 SRKKSRHGLSWSAFSQLKAGDLVVHEEHGIGRYKGLSTMEIAQRIQDF-VIIEYAAKSKL 557
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+P + + + K + + K + +
Sbjct: 558 YLPADRVSVLQKYAGA------------DEKGPKLDQLGGQSWGLTKQKAKNSVKKIARQ 605
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+V + + +S Y + + +AI+ + +LSS
Sbjct: 606 LVELYALRNYRKGFRFSPPDHYFREFEAAFE---YEETDDQSKAIDDVLEDLSSDK 658
>gi|308185328|ref|YP_003929461.1| transcription-repair coupling factor [Helicobacter pylori SJM180]
gi|308061248|gb|ADO03144.1| transcription-repair coupling factor [Helicobacter pylori SJM180]
Length = 999
Score = 74.1 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+K GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KHRKSKLALNELNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPAK------------DRLGKGSFLKLKAKVRTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTRDQEKAIAEISKDLSSHR 504
>gi|317181253|dbj|BAJ59039.1| transcription-repair coupling factor [Helicobacter pylori F32]
Length = 999
Score = 74.1 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+Q+ GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQRSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPIK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSSK
Sbjct: 456 AAERNLILGKKMDTHLAE--LEIFKSHAGFEYTSDQEKAIAEISKDLSSKR 504
>gi|29840634|ref|NP_829740.1| transcription-repair coupling factor [Chlamydophila caviae GPIC]
gi|29834984|gb|AAP05618.1| transcription-repair coupling factor [Chlamydophila caviae GPIC]
Length = 1085
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 436 PGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGAS 494
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G RR+++ K + L + ++Q S
Sbjct: 495 DKAPD--LHNLNGSKW-------RRSRDLSEKS-------LVLYAEKLLQLEAQRSTIPS 538
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI I ++ S
Sbjct: 539 FIYPPHGEEVIKFAENFPYEETPDQLKAIEQIYSDMMSDK 578
>gi|325662342|ref|ZP_08150951.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471344|gb|EGC74567.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 1115
Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ ++ + G+++V+ HG+G I++ EV + ++ I++ L +
Sbjct: 431 TYEGQKIQSFSDLKVGDYVVHENHGLGIYQGIEKIEVDKVAKDYMKISYAD-GGNLYILA 489
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + K + + + ++ E+V
Sbjct: 490 TQLELIQKYASA------------DAKRPKLNKLGGQEWAKTKTRVRGAVKEIAKELVEL 537
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y E +++ M + + AI + ++ SK
Sbjct: 538 YAARQKEEGYVYGEDTIWQREFEEMFP---FEETDDQLNAIEATKKDMESKK 586
>gi|331086145|ref|ZP_08335227.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406304|gb|EGG85818.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 1113
Score = 73.7 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ ++ + G+++V+ HG+G I++ EV + ++ I++ L +
Sbjct: 429 TYEGQKIQSFSDLKVGDYVVHENHGLGIYQGIEKIEVDKVAKDYMKISYAD-GGNLYILA 487
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + K + + + ++ E+V
Sbjct: 488 TQLELIQKYASA------------DAKRPKLNKLGGQEWAKTKTRVRGAVKEIAKELVEL 535
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y E +++ M + + AI + ++ SK
Sbjct: 536 YAARQKEEGYVYGEDTIWQREFEEMFP---FEETDDQLNAIEATKKDMESKK 584
>gi|304383034|ref|ZP_07365510.1| transcription-repair coupling factor [Prevotella marshii DSM 16973]
gi|304335817|gb|EFM02071.1| transcription-repair coupling factor [Prevotella marshii DSM 16973]
Length = 1143
Score = 73.7 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 50/166 (30%), Gaps = 17/166 (10%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
TG++IV+ G+G + E + + + V + I
Sbjct: 452 ELLEMETGDYIVHVDFGIGRFVGLVRVATETGYQE-VIRIAYQHNDKVDVSIHSLHKISK 510
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ S R L G + +R I ++ RDL + ++
Sbjct: 511 YRNSNTDEPPRLSTLGTGAWNRLKERAKKR---------------IKDIARDLIQLYAKR 555
Query: 130 EKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+S+L + ++ + + ++ ++ S+
Sbjct: 556 RHIKGHAFSPDSSLQHELEASFLYEDTPDQLKTTQEVKADMESERP 601
>gi|307638232|gb|ADN80682.1| Transcription-repair coupling factor [Helicobacter pylori 908]
Length = 906
Score = 73.7 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + GK + RA+ L+ IA + +L
Sbjct: 409 NLHLIARYVVQSDSVPVKDRL---GKGSFLKLKTKVRAK----------LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMDVHLAE--LEVFKSHAGFEYTSDQEKAIAEISRDLSSHR 504
>gi|15612523|ref|NP_224176.1| transcription-repair coupling factor [Helicobacter pylori J99]
gi|7531157|sp|Q9ZJ57|MFD_HELPJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|4156075|gb|AAD07030.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 73.7 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + GK + RA+ L+ IA + +L
Sbjct: 409 NLHLIARYVVQSDSVPVKDRL---GKGSFLKLKAKVRAK----------LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMDTHLAE--LEIFKSHAGFEYTSDQEKAIAEISRDLSSHR 504
>gi|119953404|ref|YP_945613.1| transcription-repair coupling factor [Borrelia turicatae 91E135]
gi|119862175|gb|AAX17943.1| transcription-repair coupling factor [Borrelia turicatae 91E135]
Length = 1122
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 16/170 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K H+V+ HG+G +IK + + ++ ++ I + L +P+
Sbjct: 448 SSKTKTIDSFIEVEKNSHVVHINHGIGIFRQIKRIKTSLLEKDYIEIEYAD-NEKLFIPI 506
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I +E ++ + S+ ++ A ++V
Sbjct: 507 EQTHLIQRYIGNETQNIK------------LDKISSKTWEKKKAYAKKRIDAIADKLVEL 554
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ +S Y + ++ E + + AI+ I+ ++ S
Sbjct: 555 YVQRESSKGFQYPQDNEWQL---LFESEFPYDETPDQLTAISEIKQDMMS 601
>gi|57241985|ref|ZP_00369925.1| transcription-repair coupling factor [Campylobacter upsaliensis
RM3195]
gi|57017177|gb|EAL53958.1| transcription-repair coupling factor [Campylobacter upsaliensis
RM3195]
Length = 974
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+ IV+ +GVG ++ ++G K EF V ++ L +PV I
Sbjct: 339 DELKIGDFIVHEDYGVGKFLGLELLNISGAKKEF-VALSYQNNDKLLLPVENLYMIDKYL 397
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
A+ L+ + + + + S + ++
Sbjct: 398 GVGG-----AIPLLDRLGKSTFIKLKEKLKTKLLALASQIIAMA-----------AKRAL 441
Query: 132 SYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + A V+ + + +A I + S
Sbjct: 442 IKPKKIMIDLEAQADFVQRAGFSYTEDQVKACEDILEDFKSSR 484
>gi|291551083|emb|CBL27345.1| CarD-like/TRCF domain [Ruminococcus torques L2-14]
Length = 159
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 6/155 (3%)
Query: 17 GEHIVYPAHGVGTITEIKEQE---VAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
G+ +VY GV + E+ + + V G K + + + D + VP+ D +R+
Sbjct: 5 GDAVVYKCRGVYKVEEVGKLDFSFVDGKKDYYTLQSIDNQRDKAYVPID--DDKNIRRPV 62
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP-EKS 132
+ L + + R QEY I+S +V++ L+ + +
Sbjct: 63 SEQKAKELLDNLAEVGILNVKNEKYREQEYKDCISSFCPENWVKVLKTLYSRTKRRGSMT 122
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
+++ + + E+ V I E LI+
Sbjct: 123 SMDKKYQMLLEHALSSEMNYVLGIPAGEMTELIKK 157
>gi|203288058|ref|YP_002223073.1| transcription-repair coupling factor [Borrelia recurrentis A1]
gi|201085278|gb|ACH94852.1| transcription-repair coupling factor [Borrelia recurrentis A1]
Length = 1125
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 18/173 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K HIV+ HG+G +IK + + ++ ++ I + L +P+
Sbjct: 451 SSKTKPIDSFIEIEKNSHIVHINHGIGIFRQIKRIKTSLIEKDYIEIEYAD-NEKLFIPI 509
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I +E ++ R + + K I ++
Sbjct: 510 EQTHLIQKYIGNETQNIKL----------------DRISSKTWEKKKVYATKKIDKIADQ 553
Query: 122 LHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
L ++ E + + E + + AI+ I+ ++ S
Sbjct: 554 LVSLYAERENITGFQYPQDDEWQLLFESEFPYDETPDQLTAISEIKQDMMSSK 606
>gi|260589951|ref|ZP_05855864.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
gi|260539758|gb|EEX20327.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
Length = 1182
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 16/168 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
KR G+++V+ HG+G I++ V + ++ I + L + +
Sbjct: 503 KRIQSFNELSIGDYVVHENHGLGVYKGIEKITVDKVAKDYIKIEYAG-GSTLYILPNQLD 561
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + +A + + + K+ ++VR
Sbjct: 562 MLQKYAGA------------DARAPKLNKLGGQEWNKTKTKVRGAVKNIAKDLVRLYAAR 609
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y +++ M + + AI + ++ SK
Sbjct: 610 QATQGFQYEPDTVWQREFEEMFP---FEETDDQLMAIQAAKQDMESKK 654
>gi|331084270|ref|ZP_08333375.1| transcription-repair coupling factor [Lachnospiraceae bacterium
6_1_63FAA]
gi|330401805|gb|EGG81382.1| transcription-repair coupling factor [Lachnospiraceae bacterium
6_1_63FAA]
Length = 1182
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 16/168 (9%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAI 65
KR G+++V+ HG+G I++ V + ++ I + L + +
Sbjct: 503 KRIQSFNELSIGDYVVHENHGLGVYKGIEKITVDKVAKDYIKIEYAG-GSTLYILPNQLD 561
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ + +A + + + K+ ++VR
Sbjct: 562 MLQKYAGA------------DARAPKLNKLGGQEWNKTKTKVRGAVKNIAKDLVRLYAAR 609
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y +++ M + + AI + ++ SK
Sbjct: 610 QATQGFQYEPDTVWQREFEEMFP---FEETDDQLMAIQAAKQDMESKK 654
>gi|203284524|ref|YP_002222264.1| transcription-repair coupling factor [Borrelia duttonii Ly]
gi|201083967|gb|ACH93558.1| transcription-repair coupling factor [Borrelia duttonii Ly]
Length = 1125
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 18/173 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ + K HIV+ HG+G +IK + + ++ ++ I + L +P+
Sbjct: 451 SSKTKPIDSFIEIEKNSHIVHINHGIGIFRQIKRIKTSLIEKDYIEIEYAD-NEKLFIPI 509
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I +E ++ R + + K I ++
Sbjct: 510 EQTHLIQKYIGNETQNIKL----------------DRISSKTWEKKKVYATKKIDKIADQ 553
Query: 122 LHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
L ++ E + + E + + AI+ I+ ++ S
Sbjct: 554 LVSLYAERENITGFQYPQDDEWQLLFESEFPYDETPDQLTAISEIKQDMMSSK 606
>gi|300726486|ref|ZP_07059932.1| transcription-repair coupling factor [Prevotella bryantii B14]
gi|299776214|gb|EFI72778.1| transcription-repair coupling factor [Prevotella bryantii B14]
Length = 1150
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 15/165 (9%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
Q G+ IV+ G+G + V G + + K+ + V + I
Sbjct: 456 ELQEMEPGDFIVHVDLGIGKFGGLVRVPV-GNSYQEMIRIIYKNNDKVDVSIHSLYKISK 514
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
+ SE G+ T+ + K ++++ + +
Sbjct: 515 YRSSET-----------GEPPRLSTLGTGAWDRMKEKAKKKIKDIARDLIKLYAKRKREK 563
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+YS+ + + + ++ + +A ++ ++
Sbjct: 564 GFAYSKDGYMQ---HELEASFLYEDTPDQSKATQEVKADMEKDRP 605
>gi|317014985|gb|ADU82421.1| transcription-repair coupling factor [Helicobacter pylori
Gambia94/24]
Length = 1001
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+K GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KHRKSKLALNELNPGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + GK + RA+ L+ IA + +L
Sbjct: 409 NLHLIARYVAQSDSVPVKDRL---GKGSFLKLKAKVRAK----------LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMDTHLAE--LEVFKSHAGFEYTSDQEKAIAEISRDLSSHR 504
>gi|291277211|ref|YP_003516983.1| transcription-repair coupling factor [Helicobacter mustelae 12198]
gi|290964405|emb|CBG40255.1| transcription-repair coupling factor [Helicobacter mustelae 12198]
Length = 991
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE++V+ +G+G I++ ++ G +F I + L +PV
Sbjct: 347 KKQKPRIAINELNVGEYVVHIQYGIGVFGGIEQAKILGAVRDFIRID-YQGGDSLLLPVE 405
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + K L IA+ + L
Sbjct: 406 NLNLIDRY--VAGSSGVPMMDRLGKGSFAKLKE-----------KIKKKLFEIADSIISL 452
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIA-AVNSISEPEAINLIEVNLSSKS 173
E + L E +E A V + + I I ++SS
Sbjct: 453 AARRKLIEGKKIDTTLPEI---LFFKEQAGFVLTEDQERCIQEIFADMSSGQ 501
>gi|291520415|emb|CBK75636.1| CarD-like/TRCF domain [Butyrivibrio fibrisolvens 16/4]
Length = 177
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 7/163 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEV--AGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+R G+ +V+ GV I +I + E+ G K ++ +A + +R
Sbjct: 2 DYRVGDFLVHEGSGVCKIEDIDDMELMGKGSKKTYYCMAPVFKAGAKVFTPVIGSTVRLR 61
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD---- 126
++ L+ + + +++ + ++A VV+ +
Sbjct: 62 PVAAEATFNEILENIDDIECINEPNDRMLQEKFKEVMAEFTPESLARVVKTVLIRKWQRL 121
Query: 127 -SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
S + + ++ A ++ E+A A +L E
Sbjct: 122 ESGKKVMAIDEKILSVAGRKLYEEMAFSMGKDISYAQHLFEDA 164
>gi|154503862|ref|ZP_02040922.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
gi|153795461|gb|EDN77881.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
Length = 1121
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ HG+G I++ EV + ++ I++ L + +
Sbjct: 435 KIQSFSELKVGDYVVHENHGLGIYQGIEKIEVDKITKDYMKISYAG-GSSLYILATQLDL 493
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I ++A + ++ K + A+ ++ RDL
Sbjct: 494 IQKYAGADAKKPKL----------------NKLGSNQWTKTKNQVRGAVRQIARDLVELY 537
Query: 127 SQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + ++ + + + +AI + ++ SK
Sbjct: 538 AARQQENGYQYEPDTVWQKEFEEMFPFEETDDQLQAIADTKQDMESKK 585
>gi|325265224|ref|ZP_08131950.1| hypothetical protein HMPREF0240_04239 [Clostridium sp. D5]
gi|324029628|gb|EGB90917.1| hypothetical protein HMPREF0240_04239 [Clostridium sp. D5]
Length = 168
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 51/156 (32%), Gaps = 4/156 (2%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVA--GMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
GE +VY G+ + ++ + +++ + + + V +RK
Sbjct: 2 NPGEVVVYKCKGMYKVEDVGTLNFGFVDRRKKYYTLQS-MEDSRERAYVPTEDKENIRKP 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP-EK 131
+ + + R +EY I+ V++ LH+
Sbjct: 61 VSRDEAIELIHELDEIEVLWIQNEKLREREYKDCISGYSPKDWVRVLKTLHKRTISRGSI 120
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ +++ + + + E+ I + + + I+
Sbjct: 121 TSMDKKYQQMIEHALYSELGYALGIPQNKVEHFIQE 156
>gi|261838840|gb|ACX98606.1| transcription-repair coupling factor [Helicobacter pylori 51]
Length = 999
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPIK------------DRLGKGSFLKLKAKVKTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMDTHLAE--LEIFKSHAGFEYTNDQEKAIAEISKDLSSHR 504
>gi|309777118|ref|ZP_07672082.1| probable transcriptional regulator [Erysipelotrichaceae bacterium
3_1_53]
gi|308915127|gb|EFP60903.1| probable transcriptional regulator [Erysipelotrichaceae bacterium
3_1_53]
Length = 165
Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEV-AGMKLEFFVIAFDKD-KMCLKVPVGKAIDIGMR 70
F +++ Y + G+ I + ++ + G+ + +V+ + K ++ PV G+R
Sbjct: 1 MFEIHDYVRYGSFGLFQIVDKIQKTIKNGVVKDCYVLYGVQQVKTRIETPVDNP---GLR 57
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RT 125
K+ ++ + + T +R +E+ + GD IA+ V++ ++ +
Sbjct: 58 KVLSMEDIDSLITKMPDIETNWITDKKKREEEFRNALRCGDCIALVRVMKTIYAVKEEKA 117
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
++ + SY++ ++E A +++ EIA IS EA + I LS
Sbjct: 118 RNRKQLSYTDHSIFEQAQQQLLEEIAFGAQISVEEADDYIRKKLS 162
>gi|325996826|gb|ADZ52231.1| Transcription-repair coupling factor [Helicobacter pylori 2018]
gi|325998418|gb|ADZ50626.1| Transcription-repair coupling factor [Helicobacter pylori 2017]
Length = 1001
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + GK + RA+ L+ IA + +L
Sbjct: 409 NLHLIARYVVQSDSVPVKDRL---GKGSFLKLKTKVRAK----------LLEIAGKIIEL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMDVHLAE--LEVFKSHAGFEYTSDQEKAIAEISRDLSSHR 504
>gi|325295172|ref|YP_004281686.1| transcription-repair coupling factor [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065620|gb|ADY73627.1| transcription-repair coupling factor [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 1059
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 18/169 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ G +V+ +G+G I + + +F I + L P +
Sbjct: 405 KKEDITTLEPGTLVVHRDYGIGIFQGIISRVIGNKTFDFIEIEYAG-GERLYAPFTQIDR 463
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I +GK+ + + + KI + ++ ++L
Sbjct: 464 IYKYSGY------------KGKSPKLDKLGGTSWKNLERKIKA----SLINFAKELAELY 507
Query: 127 SQPEKSYSERQL-YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + E+ L E+ L R + + +AI + ++ S+
Sbjct: 508 KERKSAKGEKILGDENLLREFERRFPYKPTPDQLKAIREVYKDMESEKP 556
>gi|89897946|ref|YP_515056.1| transcription-repair coupling factor [Chlamydophila felis Fe/C-56]
gi|89331318|dbj|BAE80911.1| transcription-repair coupling factor-superfamily II helicase
[Chlamydophila felis Fe/C-56]
Length = 1084
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 56/160 (35%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G ++++ ++ ++ V+ + K L VP +A I +
Sbjct: 435 PGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYAD-KARLYVPSDQAYLISRYVGTS 493
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+ L + G +R+++ K + L + ++Q + S
Sbjct: 494 EKTPD--LHNLNGSKW-------KRSRDLSEKS-------LVLYAEKLLQLEAQRSTAPS 537
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +AI I ++ S
Sbjct: 538 FIYPPHGEEVMKFAERFPYEETPDQLKAIEQIYSDMMSDK 577
>gi|307720513|ref|YP_003891653.1| transcription-repair coupling factor [Sulfurimonas autotrophica DSM
16294]
gi|306978606|gb|ADN08641.1| transcription-repair coupling factor [Sulfurimonas autotrophica DSM
16294]
Length = 997
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 16/161 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ +GVG +I++ E+ G +F VI + + +PV I
Sbjct: 356 DDLKAGDYVVHEDYGVGIFEKIEQTEILGGIKDFIVIKYVG-DDKILLPVENLDFIDRYI 414
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
G V + + AK+ L ++V
Sbjct: 415 AGG------------GATPVLDRLGKGSFGKLKAKVRKRLLEIAGQIVNTAAARALIKAP 462
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
S L + L + + +A+N I +SS
Sbjct: 463 KIS---LGKKELQEFQALSGFEYTEDQTQAVNEILNQMSSG 500
>gi|237751094|ref|ZP_04581574.1| transcription-repair coupling factor [Helicobacter bilis ATCC
43879]
gi|229373539|gb|EEO23930.1| transcription-repair coupling factor [Helicobacter bilis ATCC
43879]
Length = 1042
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 15/171 (8%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + G ++V+ +G+G IK+ + G +F + + L +PV
Sbjct: 386 RKRKVKLELDALKVGAYVVHSEYGIGIFEAIKQVSIMGGLKDF-ISIIYANDDRLLLPVE 444
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I ++ L + I E++R
Sbjct: 445 NLNMIEQYSAYDSVVRIDKL-------------GKSSFLKLKDSIKEKLFAIANEIIRLQ 491
Query: 123 HRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ + +A N + + AI +L S
Sbjct: 492 AQRTLAKGVKIELETPDQITAFNTFESSRGFTLTQDQTHAIQESLKDLKSG 542
>gi|32265957|ref|NP_859989.1| transcription-repair coupling factor [Helicobacter hepaticus ATCC
51449]
gi|32262006|gb|AAP77055.1| transcription-repair coupling factor [Helicobacter hepaticus ATCC
51449]
Length = 1001
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 55/171 (32%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+K GE++V+ +G+G IK+ ++ G+ +F + + + L +PV
Sbjct: 350 KHKKPTLKLNEIAQGEYVVHSEYGIGIFEGIKQTQIVGVVRDF-IEISYQGEDKLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I G+ + + + K+ + L ++ DL
Sbjct: 409 NLNMIERYVADS------------GQIPMLDGLGKGSFAKLKQKVKTKLLEIAHNII-DL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + Q + + +I I +LSS
Sbjct: 456 AAKRNLLQGIKIDTQNPSLL--SFQNACGFTLTHDQIRSIEEIYTDLSSGK 504
>gi|284926314|gb|ADC28666.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni IA3902]
Length = 978
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G++IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVE 391
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + + + I S +I
Sbjct: 392 NLYLIDKYLGVSGS-----IPSLDKLGKTSFIKLKEKLKTKLLAIASKIVIMA------- 439
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +++ + + + + + +A + I + S
Sbjct: 440 ----AKRSLVQAKKITVDLNRQADFITSAGFIYTSDQEKACHEILQDFQSGK 487
>gi|255994799|ref|ZP_05427934.1| transcription-repair coupling factor [Eubacterium saphenum ATCC
49989]
gi|255993512|gb|EEU03601.1| transcription-repair coupling factor [Eubacterium saphenum ATCC
49989]
Length = 1092
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 60/161 (37%), Gaps = 18/161 (11%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
G+++V+ G+G T IK +++G + ++ L VPV A +
Sbjct: 419 EEGDYLVHKTKGIGRYTGIKTMKLSGRSKD-YICLVYAQDDKLYVPVENANVLSKYSGVS 477
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
+++ WS ++ +++ E+ + + +++ +
Sbjct: 478 DAA--------PKLSKLFTNEWSVTKKKAW--------LSVLELAKKILEDEAKRKAKKG 521
Query: 135 ERQLYESAL-NRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + + + + + + + AI+ ++ ++ S S
Sbjct: 522 YAFLPDDEESKKFDADFSYIPTDDQLRAIDEVKADMESHSP 562
>gi|268680233|ref|YP_003304664.1| transcription-repair coupling factor [Sulfurospirillum deleyianum
DSM 6946]
gi|268618264|gb|ACZ12629.1| transcription-repair coupling factor [Sulfurospirillum deleyianum
DSM 6946]
Length = 989
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 54/171 (31%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+++ + + G+++V+ +G+G + + V G +F V+ L +PV
Sbjct: 343 KRKRVRIVLDELKNGDYVVHENYGIGIFKGLTQVSVLGATKDF-VLIEYLGDDKLLLPVE 401
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I G + Q+ AK L +E++
Sbjct: 402 NLHVIDRYIGES------------GGLVSVDRLGKGSFQKLKAKTKERLLEIASEIIAIA 449
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + L + + + + I+ I V+ S
Sbjct: 450 AKREMVEGLNIAIE---NEELQAFQADAGFMYTEDQKRVIDEILVDFKSGK 497
>gi|15618800|ref|NP_225086.1| transcription-repair coupling [Chlamydophila pneumoniae CWL029]
gi|15836424|ref|NP_300948.1| transcription-repair coupling [Chlamydophila pneumoniae J138]
gi|16752145|ref|NP_445512.1| transcription-repair coupling factor [Chlamydophila pneumoniae
AR39]
gi|33242253|ref|NP_877194.1| transcription-repair coupling factor [Chlamydophila pneumoniae
TW-183]
gi|4377210|gb|AAD19029.1| Transcription-Repair Coupling [Chlamydophila pneumoniae CWL029]
gi|7189888|gb|AAF38755.1| transcription-repair coupling factor [Chlamydophila pneumoniae
AR39]
gi|8979265|dbj|BAA99099.1| transcription-repair coupling [Chlamydophila pneumoniae J138]
gi|33236764|gb|AAP98851.1| transcription-repair coupling factor [Chlamydophila pneumoniae
TW-183]
Length = 1085
Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 55/160 (34%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 437 PGETVVHIHNGIGKFLGIEKKPNHLNIETDYLVLEYAD-KARLYVPSNQAYLISRYVGTS 495
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
KA + S + + ++ L + ++Q + +
Sbjct: 496 ------------DKAADLHHLNSSKWKRSRDLTEK----SLIVYAEKLLQLEAQRSTTPA 539
Query: 135 ERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + + + I+ I ++ S
Sbjct: 540 FVYPPHGESVIKFAETFPYEETPDQLKTIDQIYNDMMSPK 579
>gi|315124568|ref|YP_004066572.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315018290|gb|ADT66383.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 978
Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 57/172 (33%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G++IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVE 391
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + K+ I + + ++
Sbjct: 392 NLYLIDKYLGVSGS----------------IPSLDKLGKTSFIKLKEKLKIKLLAIASEI 435
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +++ + + + + + + +A + I + S
Sbjct: 436 VIMAAKRSLVQAKKITVDLSRQADFITSAGFIYTSDQEKACHEILQDFQSGK 487
>gi|269302679|gb|ACZ32779.1| transcription-repair coupling factor [Chlamydophila pneumoniae
LPCoLN]
Length = 1083
Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 55/160 (34%), Gaps = 19/160 (11%)
Query: 16 TGEHIVYPAHGVGTITEIKEQ-EVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
GE +V+ +G+G I+++ ++ ++ V+ + K L VP +A I +
Sbjct: 435 PGETVVHIHNGIGKFLGIEKKPNHLNIETDYLVLEYAD-KARLYVPSNQAYLISRYVGTS 493
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYS 134
KA + S + + ++ L + ++Q + +
Sbjct: 494 ------------DKAADLHHLNSSKWKRSRDLTEK----SLIVYAEKLLQLEAQRSTTPA 537
Query: 135 ERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + + + I+ I ++ S
Sbjct: 538 FVYPPHGESVIKFAETFPYEETPDQLKTIDQIYNDMMSPK 577
>gi|323691738|ref|ZP_08105998.1| transcription-repair coupling factor [Clostridium symbiosum
WAL-14673]
gi|323504216|gb|EGB20018.1| transcription-repair coupling factor [Clostridium symbiosum
WAL-14673]
Length = 1179
Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+Q K+ G+++V+ +HG+G I++ E + ++ I +D L +P
Sbjct: 493 AYQGKKIQSFSELAVGDYVVHESHGLGIYRGIEKIEQDKIVKDYIKIE-YRDGGNLYLPA 551
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + K + + K+ E+V
Sbjct: 552 TRLEGIQKYAGA------------DAKQPKLNKLGGTEWNKTKTKVRGAVKEIAKELVEL 599
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y +++S M + + EAI + ++ SK
Sbjct: 600 YASRQESEGYQYGADTVWQSEFEEMFP---FEETEDQLEAIESTKRDMESKK 648
>gi|240144343|ref|ZP_04742944.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
gi|257203687|gb|EEV01972.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
Length = 1176
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ ++ A G+++V+ HG+G I++ EV ++ I + L +
Sbjct: 491 TYEGEKIASFTDLNIGDYVVHENHGLGIYRGIEKIEVDKTVKDYIKIEYAG-GGNLYILA 549
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + K + + + K+ ++V+
Sbjct: 550 TQLELIQKYAGA------------DAKKPKLNKLGGQEWNKTKTKVRGAVKEIAQDLVKL 597
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Q Y +++ M + + AI + ++ S
Sbjct: 598 YAQRQDQEGFVYGPDTVWQREFEEMFP---FEETEDQELAIEATKKDMESTK 646
>gi|210608664|ref|ZP_03287941.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
gi|210152921|gb|EEA83927.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
Length = 1112
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ HG+G I++ EV + ++ IA+ L +P +
Sbjct: 434 KIQSFSELKVGDYVVHENHGLGIYQGIEKIEVDKVSKDYMKIAYA-AGGNLYIPATQLDL 492
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + K + + + ++ ++V
Sbjct: 493 IQKYASA------------DAKKPKLNRLGGQEWTKTKTRVRGAVKEIAKDLVELYAARQ 540
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y E +++ M + + AI + ++ S
Sbjct: 541 EKHGFVYGEDTVWQREFEEMFP---FEETEDQLLAIEATKKDMESTK 584
>gi|291535574|emb|CBL08686.1| transcription-repair coupling factor [Roseburia intestinalis M50/1]
Length = 1176
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ ++ A G+++V+ HG+G I++ EV ++ I + L +
Sbjct: 491 TYEGEKIASFTDLNIGDYVVHENHGLGIYRGIEKIEVDKTVKDYIKIEYAG-GGNLYILA 549
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I + K + + + K+ ++V+
Sbjct: 550 TQLELIQKYAGA------------DAKKPKLNKLGGQEWNKTKTKVRGAVKEIAQDLVKL 597
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Q Y +++ M + + AI + ++ S
Sbjct: 598 YAQRQDQEGFVYGPDTVWQREFEEMFP---FEETEDQELAIEATKKDMESTK 646
>gi|157415346|ref|YP_001482602.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 81116]
gi|157386310|gb|ABV52625.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 81116]
gi|307747987|gb|ADN91257.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni M1]
Length = 978
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 57/172 (33%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G++IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVE 391
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + + + I S +I
Sbjct: 392 NLYLIDKYLGVSGS-----IPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMA------- 439
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +++ + + + + + + +A + I + S
Sbjct: 440 ----AKRSLVQAKKITVDLSRQADFITSAGFIYTSDQEKACHEILQDFQSGK 487
>gi|241518444|ref|YP_002979072.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862857|gb|ACS60521.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 1072
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 19/163 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ +V+ HGVG + +++ V + + + + L
Sbjct: 410 ELRIGDVVVHEDHGVGVLRDLESIAVENVCRDAARLEYRDGDSVLV-------------- 455
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+E KL R + + R I R L + + S
Sbjct: 456 ----PMEEFGKLWRYGSEPEAVTLDRLHTAAWQNKREKIAADIQSTARHLIKLAKHRQAS 511
Query: 133 YSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+E + A + R + + EAI + +L++ +
Sbjct: 512 RAEAFVPPRAGFSAFTRRFPFTETHDQAEAIRSVLSDLATGRA 554
>gi|86151063|ref|ZP_01069279.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86153028|ref|ZP_01071233.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121613373|ref|YP_001000763.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 81-176]
gi|85842233|gb|EAQ59479.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843913|gb|EAQ61123.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249115|gb|EAQ72076.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 978
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 57/172 (33%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G++IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVE 391
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + + + I S +I
Sbjct: 392 NLYLIDKYLGVSGS-----IPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMA------- 439
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +++ + + + + + + +A + I + S
Sbjct: 440 ----AKRSLVQAKKITVDLSRQADFITSAGFIYTSDQEKACHEILQDFQSGK 487
>gi|149194843|ref|ZP_01871937.1| transcription-repair coupling factor [Caminibacter mediatlanticus
TB-2]
gi|149135002|gb|EDM23484.1| transcription-repair coupling factor [Caminibacter mediatlanticus
TB-2]
Length = 981
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 67/168 (39%), Gaps = 18/168 (10%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
++ + + + G+ +V+ HG+G +K+ EV G EF + L +PV
Sbjct: 342 KRTNLVLDELKKGDFVVHIDHGIGKFLGLKKMEVLGKIGEF-AEVLYANDDKLLLPVENL 400
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
+ R ++ + + KL +G AK + + + D+ +
Sbjct: 401 DKL-ERYIAPDGVIPQLDKLGKGT---------------FAKKLTKIKEKVYAIAADIVK 444
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
++ E S + +E + +++ ++ + +AIN I + +K
Sbjct: 445 LAAKREVSSPIKLNFEGVKD-FIKKAPFTHTNDQLKAINEIINDFKTK 491
>gi|323485663|ref|ZP_08091001.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
WAL-14163]
gi|323401013|gb|EGA93373.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
WAL-14163]
Length = 1179
Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+Q K+ G+++V+ +HG+G I++ E + ++ I +D L +P
Sbjct: 493 AYQGKKIQSFSELAVGDYVVHESHGLGIYRGIEKIEQDKIVKDYIKIE-YRDGGNLYLPA 551
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ G++K + A + L + G + K+ E+V
Sbjct: 552 TRLE--GIQKYAGADARQPKLNKLGGTE----------WNKTKTKVRGAVKEIAKELVEL 599
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
Y +++S M + + EAI + ++ SK
Sbjct: 600 YASRQESEGYQYGADTVWQSEFEEMFP---FEETEDQLEAIESTKRDMESKK 648
>gi|219681659|ref|YP_002468045.1| transcription-repair coupling factor [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471348|ref|ZP_05635347.1| transcription-repair coupling factor [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219624502|gb|ACL30657.1| transcription-repair coupling factor [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 812
Score = 72.1 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 19 HIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFV 78
+++ HG+G + E A ++ E+ VI++ + L VPV + +
Sbjct: 147 PVMHIEHGIGRYKGLTTIETASIQSEYLVISYA-EGDKLYVPVSNLHLVSPYTGTSIE-- 203
Query: 79 ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQL 138
L + G W++ + + + + + + +S ++
Sbjct: 204 NAPLHKLGGDD------WNKEKHKISKTVYDHAAQLLHIYAK------RESKTGFSFKKN 251
Query: 139 YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + + + + + E + + ++S
Sbjct: 252 IEK-YDLFCNDCSFKTTSDQNEVMKFVLKDMSKPIP 286
>gi|57237967|ref|YP_179216.1| transcription-repair coupling factor [Campylobacter jejuni RM1221]
gi|205355835|ref|ZP_03222604.1| transcription repair coupling factor [Campylobacter jejuni subsp.
jejuni CG8421]
gi|57166771|gb|AAW35550.1| transcription-repair coupling factor [Campylobacter jejuni RM1221]
gi|205346269|gb|EDZ32903.1| transcription repair coupling factor [Campylobacter jejuni subsp.
jejuni CG8421]
gi|315058526|gb|ADT72855.1| Transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni S3]
Length = 978
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G++IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVE 391
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + + + I S +I
Sbjct: 392 NLYLIDKYLGVSGS-----IPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMA------- 439
Query: 123 HRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +++ + + + + + +A + I + S
Sbjct: 440 ----AKRSLVQAKKITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGK 487
>gi|283956482|ref|ZP_06373962.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792202|gb|EFC30991.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 1336]
Length = 978
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G++IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVE 391
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + + + I S +I
Sbjct: 392 NLYLIDKYLGVSGS-----IPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMA------- 439
Query: 123 HRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +++ + + + + + +A + I + S
Sbjct: 440 ----AKRSLVQAKKITVDLNRQADFITSAGFIYTSDQEKACHEILQDFQSGK 487
>gi|219682214|ref|YP_002468598.1| transcription-repair coupling factor [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219621947|gb|ACL30103.1| transcription-repair coupling factor [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
Length = 812
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 16/156 (10%)
Query: 19 HIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFV 78
+++ HG+G + E A ++ E+ VI++ + L VPV + +
Sbjct: 147 PVMHIEHGIGRYKGLTTIETASIQSEYLVISYA-EGDKLYVPVSNLHLVSPYTGTSIE-- 203
Query: 79 ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQL 138
A G + YD + A E + +
Sbjct: 204 -NAPLHKLGGDDWNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEK-------- 254
Query: 139 YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + E + + ++S
Sbjct: 255 ----YDLFCNDCSFKTTSDQNEVMKFVLKDMSKPIP 286
>gi|88596440|ref|ZP_01099677.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 84-25]
gi|218562699|ref|YP_002344478.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|88191281|gb|EAQ95253.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360405|emb|CAL35202.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|315929931|gb|EFV09089.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni 305]
Length = 978
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G++IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVE 391
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + + + I S +I
Sbjct: 392 NLYLIDKYLGVSGS-----IPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMA------- 439
Query: 123 HRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +++ + + + + + +A + I + S
Sbjct: 440 ----AKRSLVQAKKITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGK 487
>gi|315650057|ref|ZP_07903136.1| transcription-repair coupling factor [Eubacterium saburreum DSM
3986]
gi|315487686|gb|EFU77990.1| transcription-repair coupling factor [Eubacterium saburreum DSM
3986]
Length = 1112
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R G++IV+ HG+G I++ E G+ + +V + VPV K
Sbjct: 436 RVTSLSELYVGDYIVHEDHGLGIYRGIEKIERDGIIKD-YVKIEYQGGDNCFVPVSKLNR 494
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I +E K + + +++ + E+V
Sbjct: 495 IQKYAGAEI------------KKPKLNKLGGVEWSKTKSRVKTEVEEMAKELVSLYANRL 542
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y E L++ M + + +AI + +L +
Sbjct: 543 NGKGVVYGEDTLWQREFEEMFE---YEETYDQLKAIEDAKRDLETGK 586
>gi|15616905|ref|NP_240118.1| transcription-repair coupling factor [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|14194918|sp|P57381|MFD_BUCAI RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|25403587|pir||D84964 transcription-repair coupling factor [imported] - Buchnera sp.
(strain APS)
gi|10038969|dbj|BAB13004.1| transcription-repair coupling factor [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 812
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 16/156 (10%)
Query: 19 HIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFV 78
+++ HG+G + E A ++ E+ VI++ + L VPV + +
Sbjct: 147 PVMHIEHGIGRYKGLTTIETASIQSEYLVISYA-EGDKLYVPVSNLHLVSPYTGTSIE-- 203
Query: 79 ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQL 138
A G + YD + A E + +
Sbjct: 204 -NAPLHKLGGDDWNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEK-------- 254
Query: 139 YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + E + + ++S
Sbjct: 255 ----YDLFCNDCSFKTTSDQNEVMKFVLKDMSKPIP 286
>gi|86150348|ref|ZP_01068574.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85839173|gb|EAQ56436.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
jejuni CF93-6]
Length = 978
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G++IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVE 391
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + + + I S +I
Sbjct: 392 NLYLIDKYLGVSGS-----IPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMA------- 439
Query: 123 HRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +++ + + + + + +A + I + S
Sbjct: 440 ----AKRSLVQAKKITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGK 487
>gi|223984021|ref|ZP_03634178.1| hypothetical protein HOLDEFILI_01468 [Holdemania filiformis DSM
12042]
gi|223964006|gb|EEF68361.1| hypothetical protein HOLDEFILI_01468 [Holdemania filiformis DSM
12042]
Length = 196
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE--FFVIAFDKDKMCLKVPVGKAIDIGMR 70
F+ +++ Y + G+ + +I ++E+ E + + + + P R
Sbjct: 33 MFKEKDYVRYGSRGIFQVEQIIKKELKPRHPETCYVLSSVYGIHTQIVTPASNPQL---R 89
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLH-----RT 125
++ ++R + + +R + Y + + GD +A+++ ++ +
Sbjct: 90 RVMNREEIDRMIDEMPLLESDWIDDKRKREETYRSILEEGDGHKLAQLIISIYSQKQDKL 149
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ S ++ ++ E A + + EI+ I + E + + L +K
Sbjct: 150 KDRKSLSRTDAEMLERAEDLLHEEISLSFKIKKEEVADYLLSRLKNK 196
>gi|311087188|gb|ADP67268.1| transcription-repair coupling factor [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 812
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 16/156 (10%)
Query: 19 HIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFV 78
+++ HG+G + E A ++ E+ VI++ + L VPV + +
Sbjct: 147 PVMHIEHGIGRYKGLTTIETASIQSEYLVISYA-EGDKLYVPVSNLHLVSPYTGTSIE-- 203
Query: 79 ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQL 138
A G + YD + A E + +
Sbjct: 204 -NAPLHKLGGDDWNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEK-------- 254
Query: 139 YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + E + + ++S
Sbjct: 255 ----YDLFCNDCSFKTTSDQNEVMKFVLKDMSKPIP 286
>gi|331090628|ref|ZP_08339479.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401068|gb|EGG80663.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 1112
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 52/167 (31%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ HG+G I++ +V ++ I++ L +P +
Sbjct: 434 KIQSFSELKIGDYVVHENHGLGIYQGIEKIDVDKTSKDYMKISYAG-GGNLYIPATQLDL 492
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + K + ++ + K+ ++V
Sbjct: 493 IQKYASA------------DAKKPKLNRLGTQEWTKTKTKVRGAVREIAKDLVELYAARQ 540
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y +++ M + + AI + ++ S
Sbjct: 541 REEGFVYGPDTVWQKEFEEMFP---FEETEDQMLAIEATKRDMESNK 584
>gi|222824038|ref|YP_002575612.1| transcription-repair coupling factor [Campylobacter lari RM2100]
gi|222539260|gb|ACM64361.1| transcription-repair coupling factor [Campylobacter lari RM2100]
Length = 979
Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 16/169 (9%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K + R G+ +V+ +G+ ++ +AG K EF V + L +PV
Sbjct: 334 RKASLVIDELRVGDFVVHEDYGIAKFLGLEIIIIAGAKKEF-VALGYLNNDKLLLPVENL 392
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I + + L+ + R +E L AIA + L
Sbjct: 393 YMIDKYIGASGG-----VPLLDKLGKGSFLKIKERLKE--------KLFAIASNIVSLAA 439
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ E ++ + + + + + + + I +L S
Sbjct: 440 ARA--LIKAKELKISQELQDEFINKAGFFYTKDQSQVCQEITQDLKSSQ 486
>gi|197302598|ref|ZP_03167653.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
29176]
gi|197298496|gb|EDY33041.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
29176]
Length = 1117
Score = 71.7 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 55/167 (32%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + G+++V+ HG+G I++ EV + ++ I++ + L + +
Sbjct: 437 KIQEFAELKPGDYVVHENHGLGVYQGIEKVEVDKVTRDYMKISYADGGI-LYILATQMDL 495
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + K + + + + +++ + ++V
Sbjct: 496 IQKYAGA------------DAKPPKLNKLGTPQWNKTKSQVKKAVQVIAQDLVELYAVRQ 543
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
YS +++ M + + AI + ++ S
Sbjct: 544 QTEGFVYSPDTVWQKEFEEMFP---FEETEDQLRAIEDTKKDMESTK 587
>gi|46205180|ref|ZP_00048899.2| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Magnetospirillum magnetotacticum MS-1]
Length = 312
Score = 71.4 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 3 FQQKRDA--MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
++ +D Q + G+ +V+ HG+G +K AG + + + L +P
Sbjct: 182 SKRPQDIILEVQALQPGDLVVHADHGIGRFVGLKTVTAAGAPHDCLELQYAG--GLLLLP 239
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V + + E AL + G A Q AK+ L E+++
Sbjct: 240 VENIELLTRY---GSEDSEVALDRLGGGA----------WQARKAKMKRRILEMAGELIK 286
Query: 121 DLHRTDSQPEKSYSERQLYESALNRM 146
+P + + + +
Sbjct: 287 VAAARFVKPAPALKAPEALQRIRGIL 312
>gi|313681651|ref|YP_004059389.1| transcription-repair coupling factor [Sulfuricurvum kujiense DSM
16994]
gi|313154511|gb|ADR33189.1| transcription-repair coupling factor [Sulfuricurvum kujiense DSM
16994]
Length = 995
Score = 71.4 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 17/161 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G+++V+ +GVG I++ E+ G + V+ L +PV I
Sbjct: 355 DDLKVGDYVVHEEYGVGIFVGIEQAEILGGVKD-LVVIKYMGDDKLLLPVENLDTIDRYI 413
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + R+ + + + + A++ + S
Sbjct: 414 ASGS---------LPVLDRLGKGSFGKLKESVKARLFEIASEIVGIAASRALIKASVISV 464
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
E + ++ A + + AI+ I +LSS
Sbjct: 465 DAGELRRFQDAA-------GFDYTPDQSSAISSIVRDLSSG 498
>gi|311086031|gb|ADP66113.1| transcription-repair coupling factor [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086605|gb|ADP66686.1| transcription-repair coupling factor [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
Length = 760
Score = 71.4 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 16/156 (10%)
Query: 19 HIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFV 78
+++ HG+G + E A ++ E+ VI++ + L VPV + +
Sbjct: 95 PVMHIEHGIGRYKGLTTIETASIQSEYLVISYA-EGDKLYVPVSNLHLVSPYTGTSIE-- 151
Query: 79 ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQL 138
A G + YD + A E + +
Sbjct: 152 -NAPLHKLGGDDWNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEK-------- 202
Query: 139 YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + E + + ++S
Sbjct: 203 ----YDLFCNDCSFKTTSDQNEVMKFVLKDMSKPIP 234
>gi|302671192|ref|YP_003831152.1| CarD family transcriptional regulator [Butyrivibrio proteoclasticus
B316]
gi|302395665|gb|ADL34570.1| transcriptional regulator CarD family [Butyrivibrio proteoclasticus
B316]
Length = 172
Score = 71.4 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 56/166 (33%), Gaps = 7/166 (4%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEV--AGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
GE ++Y +HG+ + EI G + +++++ D + + + +R
Sbjct: 1 MLNIGECVIYGSHGLCQVREILVPSFLERGKEKQYYMMISAVDAGSVLYVPVEGAEDKIR 60
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
+++ A E ++ + + + I D+ + +V+ L + +
Sbjct: 61 EVTGADNAEDLIEDIEEVDEILLPEGKKAEPAMLEIIKRNDVEEMMGLVKSLRKIKATRE 120
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ + A + E+A + + LS
Sbjct: 121 AQGKRFATLNERYLNLAEKLLYTELAYSLETEKETIKRRVLEMLSE 166
>gi|311087715|gb|ADP67794.1| transcription-repair coupling factor [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 760
Score = 71.4 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 16/156 (10%)
Query: 19 HIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFV 78
+++ HG+G + E A ++ E+ VI++ + L VPV + +
Sbjct: 95 PVMHIEHGIGRYKGLTTIETASIQSEYLVISYA-EGDKLYVPVSNLHLVSPYTGTSIE-- 151
Query: 79 ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQL 138
A G + YD + A E + +
Sbjct: 152 -NAPLHKLGGDDWNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEK-------- 202
Query: 139 YESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + + + E + + ++S
Sbjct: 203 ----YDLFCNDCSFKTTSDQNEVMKFVLKDMSKPIP 234
>gi|254444929|ref|ZP_05058405.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
DG1235]
gi|198259237|gb|EDY83545.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
DG1235]
Length = 1144
Score = 71.4 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 48/169 (28%), Gaps = 18/169 (10%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ GE +V+ +HG+ I + ++ G E + + L VP+ ++
Sbjct: 454 QLLDFAELVDGEFVVHLSHGIALYRGITKVDMQGQMREVL-SLEFDEGVVLHVPLQESHL 512
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + + S R + L A+ L
Sbjct: 513 ISRYVGISKTRPK------------LGKIGSNRWSKTREAAERSTLDLAAK----LLELQ 556
Query: 127 SQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + ++ + + +AI + ++ +
Sbjct: 557 AKRDTGGGHAFALDTEWQTEFEGSFPFKETPDQLKAIKESKGDMEKEIP 605
>gi|254780073|ref|YP_003058180.1| Transcription-repair coupling factor [Helicobacter pylori B38]
gi|254001986|emb|CAX30245.1| Transcription-repair coupling factor [Helicobacter pylori B38]
Length = 995
Score = 71.4 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 16/169 (9%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+K GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 352 RKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVENL 410
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
I + GK + RA+ L+ IA + +L
Sbjct: 411 HLIARYVAQSDSVPVKDRL---GKGSFLKLKAKVRAK----------LLEIASKIIELAA 457
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L E L + + +AI I +LSS
Sbjct: 458 ERNLILGKKMDVHLAE--LEVFKSHAGFEYTSDQEKAIAEISKDLSSHR 504
>gi|255281409|ref|ZP_05345964.1| transcription-repair coupling factor [Bryantella formatexigens DSM
14469]
gi|255267897|gb|EET61102.1| transcription-repair coupling factor [Bryantella formatexigens DSM
14469]
Length = 1179
Score = 71.0 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
R A G+++V+ +HG+G I++ EV + ++ I L V ++
Sbjct: 495 RIASFAELNVGDYVVHESHGLGIYRGIEKIEVDHVMKDYMKIE-YSGGSNLYVLATQSDV 553
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I SEA K + ++ + ++ + ++V +
Sbjct: 554 IQKYAGSEA------------KTPKLNRLGTQEWNKTRTRVRAAVQNIAKDLVALYSQRQ 601
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+Q +Y +++ M + + AI + ++ S
Sbjct: 602 NQKGFAYGPDTVWQREFEEMFE---FEETDDQLAAIEATKRDMESTK 645
>gi|317011784|gb|ADU85531.1| transcription-repair coupling factor [Helicobacter pylori
SouthAfrica7]
Length = 999
Score = 71.0 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+QK GE +V+ +GVG +++ + V G K +F IA+ + L +PV
Sbjct: 350 KRQKSKLALNELNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGED-KLLLPVE 408
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK+ + L ++++ +L
Sbjct: 409 NLHLIARYVAQSDSVPTK------------DRLGKGSFLKLKAKVRTKLLEIASKII-EL 455
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ E L E L + + +AI I +LSS
Sbjct: 456 AAERNLILGKKMETHLAE--LEIFKTHAGFEYTSDQEKAIAEISKDLSSHR 504
>gi|330984088|gb|EGH82191.1| transcription-repair coupling protein Mfd [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 1098
Score = 71.0 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 49/164 (29%), Gaps = 18/164 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ GE +V+ GVG + + + V + + + +
Sbjct: 438 HEIQIGEPLVHAIKGVGRFQGFESINMGDGLED-LVKIGYAEDSSSYIKINDLDLVSRYS 496
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ L + ++ ++ ++ V +DL + E+
Sbjct: 497 GGNPE--KAPLSKLNDPTWLQSLKEAQ--------------VSALSVAKDLITLRTARER 540
Query: 132 SYS-ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
S + + +R A + + +AI I +L+S
Sbjct: 541 STGVILKPAGDSYDRFAETFAYDETADQKKAIADIMSDLTSGKP 584
>gi|262037132|ref|ZP_06010624.1| transcription-repair coupling factor [Leptotrichia goodfellowii
F0264]
gi|261748820|gb|EEY36167.1| transcription-repair coupling factor [Leptotrichia goodfellowii
F0264]
Length = 1019
Score = 71.0 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 62/173 (35%), Gaps = 27/173 (15%)
Query: 4 QQKRDAMRQGFR------TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
+++++ ++ +++++ +GVG I+ E ++ D+ L
Sbjct: 343 KKRKNNKAVKYKKVNQILIDDYVIHVQYGVGIYKGIETMEERD-----YLKIKYADEDIL 397
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV K + G+ + +R ++ K+ AE
Sbjct: 398 YIPVEKLDRLEKYISY-------------GEEPKLYKLGTRGFKKKRQKLAEDIEKFAAE 444
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
+++ + SQ Y + +++ + + + +AIN ++ ++
Sbjct: 445 LIKIQAQRQSQNGFVYGKDTVWQ---EEFEAQFPFEETEDQKKAINDVKKDME 494
>gi|153951893|ref|YP_001397800.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939339|gb|ABS44080.1| transcription-repair coupling factor [Campylobacter jejuni subsp.
doylei 269.97]
Length = 978
Score = 71.0 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 56/172 (32%), Gaps = 18/172 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + G++IV+ +GVG ++ ++G K EF V ++ L +PV
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVE 391
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + + + I S +I
Sbjct: 392 NLYLIDKYLGVSGS-----IPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMA------- 439
Query: 123 HRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
++ +++ + + + + + +A + I + +
Sbjct: 440 ----AKRSLVQAKKITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQNGK 487
>gi|313904443|ref|ZP_07837820.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
gi|313470779|gb|EFR66104.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
Length = 1128
Score = 71.0 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T R G+++V+ HG+G I++ V + ++ I + + V
Sbjct: 445 TKSGDRIRDFSELSVGDYVVHENHGLGVYRGIEKITVDHVVKDYVKIEYADGGS---LFV 501
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
++K S + L + G + +++ ++V
Sbjct: 502 QATQLDVLQKYSGGEGHKPKLNKLGGAE----------WHKTKSRVRGAVKDIARDLVAL 551
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ Y E +++ M + + +AI + ++ S
Sbjct: 552 YAAREQAKGYCYGEDTVWQREFEEMFP---FEETEDQLQAIADTKRDMESSR 600
>gi|225375822|ref|ZP_03753043.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
16841]
gi|225212257|gb|EEG94611.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
16841]
Length = 1183
Score = 70.6 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ A G+++V+ HG+G I++ EV ++ I + L + +
Sbjct: 496 KIASFTDLNIGDYVVHENHGLGIYRGIEKIEVDKTVKDYIKIEYAG-GGNLYILATQLEL 554
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + K + + + K+ ++VR
Sbjct: 555 IQKYAGA------------DAKKPKLNKLGGQEWNKTKTKVRGAVKEIAGDLVRLYAVRQ 602
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
S+ +Y +++ M + + AI + ++ S
Sbjct: 603 SERGFAYGPDTVWQREFEEMFP---FEETEDQDLAIEATKKDMESTK 646
>gi|326489969|dbj|BAJ94058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 826
Score = 70.6 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 18/165 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ GE++V+ GVG I +G E +V K+ V +A +
Sbjct: 146 VDPRELEPGEYVVHKKVGVGKFVCI-----SGEDGEDYVFIQY-ADAMAKLAVDQAARML 199
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R + + + R + K +A+ ++V +L Q
Sbjct: 200 YRY------------NLPHEKKRPRNLSKLNDPSAWEKRRLKGKLAVQKMVVNLMELYLQ 247
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ A+++ E + + +A IE +L+ +
Sbjct: 248 RMRQRRPPYRKPEAMDQFASEFPYEPTPDQNQAFIDIENDLTERE 292
>gi|325265261|ref|ZP_08131986.1| transcription-repair coupling factor [Clostridium sp. D5]
gi|324029440|gb|EGB90730.1| transcription-repair coupling factor [Clostridium sp. D5]
Length = 1119
Score = 70.6 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 65/173 (37%), Gaps = 18/173 (10%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T++ ++ + G+++V+ HG+G I++ EV + ++ I++ L +
Sbjct: 436 TYEGQKIQNFSELKVGDYVVHENHGLGVYQGIEKIEVDKVTKDYMKISYAGGGA-LYILA 494
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ I ++A K ++ + S+ K S A+ V +D
Sbjct: 495 TQLDLIQKYASADA-----------KKPKLNKLGSSQ-----WTKTKSQVRRAVRAVAKD 538
Query: 122 LHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAINLIEVNLSSKS 173
L + ++S ++ + + + +AI + ++ SK
Sbjct: 539 LVELYAARQESAGFVYEPDTVWQKEFEEMFPFEETEDQLQAIADTKRDMESKK 591
>gi|258544293|ref|ZP_05704527.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC
15826]
gi|258520473|gb|EEV89332.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC
15826]
Length = 560
Score = 70.6 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 18/157 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
Q G +V+ GVG +++ E G + + L VP I
Sbjct: 422 QDLSPGTAVVHADFGVGRYLGLEKLEDDGDE---LIAIAYAKGAKLYVPTADIDLITRYG 478
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S+ L + GK+ Q KI + AE++ + ++
Sbjct: 479 GSDPDSAP--LHELGGKS----------WQSARRKIRASLHDTAAELLALYAKREATAGI 526
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVN 168
+ + ++AL E + + AI+ + +
Sbjct: 527 TIAHDPAAQAALAA---EFPFATTPDQQTAIDAVLAD 560
>gi|257126999|ref|YP_003165113.1| transcription-repair coupling factor [Leptotrichia buccalis
C-1013-b]
gi|257050938|gb|ACV40122.1| transcription-repair coupling factor [Leptotrichia buccalis
C-1013-b]
Length = 1068
Score = 70.6 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 27/176 (15%)
Query: 4 QQKRDAMRQGFRT------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K+ A ++ G+++++ +GVG I+ E ++ D+ L
Sbjct: 393 RKKKTAKAIKYKKVNQIIEGDYVIHVQYGVGIYKGIQTMEERD-----YLKIKYADEDIL 447
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV K + + +R + K+ AE
Sbjct: 448 YIPVEKLDRLEKYVS-------------NDTEPQLFRLGTRGFKRKRKKLEEDIQKFAAE 494
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+++ R SQ Y + +++ + + AIN ++ ++ S
Sbjct: 495 LIKIQARRQSQNGFVYQKDTVWQ---EEFEANFPFEETEDQRNAINDVKKDMESPQ 547
>gi|331085895|ref|ZP_08334978.1| hypothetical protein HMPREF0987_01281 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406818|gb|EGG86323.1| hypothetical protein HMPREF0987_01281 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 164
Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 58/147 (39%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + GE +V+ GV + +I + E+ +K ++ + + + + I++ +R
Sbjct: 2 KTYHIGEKVVHCPEGVCEVEDICQIEMNKIKKYYYRLKPIQSNVKVVYIPIDKIEMHVRP 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
L +E+ + + + +R + + D + + ++++ R +
Sbjct: 62 LKTKQELEKIFCIEPEEQLICYRNPQKRMDIQNQAVREDDAVMLIQLIKMYRRKRQKNHI 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISE 158
S + + + A + E++ V
Sbjct: 122 SLGDARWLKEAECYLFSEMSEVLECDY 148
>gi|260890929|ref|ZP_05902192.1| transcription-repair coupling factor [Leptotrichia hofstadii F0254]
gi|260859482|gb|EEX73982.1| transcription-repair coupling factor [Leptotrichia hofstadii F0254]
Length = 1069
Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 62/176 (35%), Gaps = 27/176 (15%)
Query: 4 QQKRDAMRQGFRT------GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCL 57
++K+ A ++ G+++++ +GVG I+ E + ++ I + + + L
Sbjct: 396 RKKKTAKAIKYKKINQIIEGDYVIHVQYGVGIYKGIQTME----ERDYLKIKYADEDI-L 450
Query: 58 KVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE 117
+PV K + + +R + K+ AE
Sbjct: 451 YIPVEKLDRLEKYVS-------------NDTEPQLFRLGTRGFKRKRKKLEEDIQKFAAE 497
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+++ R SQ Y + +++ + + AIN ++ ++ S
Sbjct: 498 LIKIQARRQSQNGFVYQKDTVWQ---EEFEANFPFEETEDQRNAINDVKKDMESPQ 550
>gi|157736671|ref|YP_001489354.1| transcription-repair coupling factor [Arcobacter butzleri RM4018]
gi|157698525|gb|ABV66685.1| transcription-repair coupling factor [Arcobacter butzleri RM4018]
Length = 995
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + +V+ +G+G I+ V G K +F VI + + L VPV I
Sbjct: 360 DELQYNDFVVHEKYGIGQYKGIEPVTVMGAKRDF-VIIQYQGEDKLLVPVENLDLIDRY- 417
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + AK+ + + D+ + + E
Sbjct: 418 -VADGNSYAVVDKLGKGS--------------FAKLKEKVKDKLFAIANDIIKLAAAREL 462
Query: 132 SYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L + + + +I I +LSS
Sbjct: 463 VNGIKINTDKKVLEDFQKSAGFEYTKDQKRSIKEILDDLSSGR 505
>gi|168702194|ref|ZP_02734471.1| transcription-repair coupling factor [Gemmata obscuriglobus UQM
2246]
Length = 1121
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 48/169 (28%), Gaps = 10/169 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI----- 67
G+++V+ AHG+ ++ + A + + D+ + +
Sbjct: 438 DLNDGDYVVHVAHGIARFRGMRMLDKASGVQDTGEDSLFPDERPANPAAEEEHLVLEFRD 497
Query: 68 GMRKLSEAHFVERALKLVRGK--ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
G+ A ++ K V G K++ AE++
Sbjct: 498 GIFLYVPATRIDLVQKYVGGSQAEPQLSKPGGAAWSRKKEKVSEAVRDMAAEMINIQALR 557
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ P + ++ + + AI ++ +L
Sbjct: 558 QAVPGHQFPPDSDWQ---KEFEAAFPYQETPDQLSAIAEVKGDLEKTKP 603
>gi|325662044|ref|ZP_08150663.1| hypothetical protein HMPREF0490_01401 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471707|gb|EGC74926.1| hypothetical protein HMPREF0490_01401 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 164
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 58/147 (39%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + GE +V+ GV + +I + E+ MK ++ + + + + +++ +R
Sbjct: 2 KTYHIGEKVVHCPEGVCEVEDICQIEMNKMKKYYYRLKPIQSNVKVVYIPIDKVEMHVRP 61
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
L +E+ + + + +R + + D + + ++++ R +
Sbjct: 62 LKTKQELEKIFCIEPEEQLICYRNPQKRMDIQNQAVREDDAVMLIQLIKMYRRKRQKNHI 121
Query: 132 SYSERQLYESALNRMVREIAAVNSISE 158
S + + + A + E++ V
Sbjct: 122 SLGDARWLKEAECYLFSEMSEVLECDY 148
>gi|224373507|ref|YP_002607879.1| transcription-repair coupling factor [Nautilia profundicola AmH]
gi|223589861|gb|ACM93597.1| transcription-repair coupling factor [Nautilia profundicola AmH]
Length = 974
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 18/170 (10%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
++K + + + G+ +V+ AHG+G +K+ E+ G E + + L +PV
Sbjct: 335 KRKKTNLVLDEIKKGDFVVHEAHGIGKFNGLKKVEILGKVGE-YAEVLYANDDKLLLPVE 393
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I + + + AK I + D+
Sbjct: 394 NLNLIEKYI-----APGGVIPTLDKLGKGTF-----------AKKREKIKEKILSMAADI 437
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ +Q + +E + + V++ + + IN I + +K
Sbjct: 438 IKLQAQRQLIEPIPLNFEGVRE-FIAKAPFVHTPDQAKTINDILDDFKTK 486
>gi|145346965|ref|XP_001417951.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578179|gb|ABO96244.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 754
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 19/168 (11%)
Query: 14 FR--TGEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
F+ TGE++V+ +G+G +K V G + + F+ + K+ + +
Sbjct: 66 FKLVTGEYVVHRKYGIGQFLGMKVLAVESANEGTQNKPFLFLKYQ-DATAKISPEASRRL 124
Query: 68 GMRKLSEAHFVERA-LKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
R S V+ L + K+ W R ++ +A I + + ++ L
Sbjct: 125 LYRFCSPGGLVKPPKLNKLNDKST-----WDLRERKTEATIRRLVVNQMVVYLQRLQCVR 179
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
ER + + + AI I +L +
Sbjct: 180 EPYPLPDPERA------KQFDASFPFTLTPDQTSAIQEITEDLQQDAP 221
>gi|315635838|ref|ZP_07891100.1| transcription-repair coupling factor [Arcobacter butzleri JV22]
gi|315479817|gb|EFU70488.1| transcription-repair coupling factor [Arcobacter butzleri JV22]
Length = 995
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ + +V+ +G+G I+ V G K +F VI + + L VPV I
Sbjct: 360 DELQYNDFVVHEKYGIGQYKGIEPVTVMGAKRDF-VIIQYQGEDKLLVPVENLDLIDRY- 417
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + AK+ + + D+ + + E
Sbjct: 418 -VADGSSYAVVDKLGKGS--------------FAKLKEKVKDKLFAIANDIIKLAAAREL 462
Query: 132 SYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L + + + +I I +LSS
Sbjct: 463 VNGIKINTDKKVLEDFQKSAGFEYTKDQKRSIKEIFDDLSSGR 505
>gi|326532884|dbj|BAJ89287.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 412
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 18/165 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ GE++V+ GVG I +G E +V K+ V +A +
Sbjct: 140 VDPRELEPGEYVVHKKVGVGKFVCI-----SGEDGEDYVFIQY-ADAMAKLAVDQAARML 193
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R + + + R + K +A+ ++V +L Q
Sbjct: 194 YRY------------NLPHEKKRPRNLSKLNDPSAWEKRRLKGKLAVQKMVVNLMELYLQ 241
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ A+++ E + + +A IE +L+ +
Sbjct: 242 RMRQRRPPYRKPEAMDQFASEFPYEPTPDQNQAFIDIENDLTERE 286
>gi|146329097|ref|YP_001209598.1| transcription-repair coupling factor [Dichelobacter nodosus
VCS1703A]
gi|146232567|gb|ABQ13545.1| transcription-repair coupling factor [Dichelobacter nodosus
VCS1703A]
Length = 1117
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 22/167 (13%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
Q G +V+ HGVG ++ + E VI + K L V + I
Sbjct: 442 QSLQDLTLGAPVVHIDHGVGRYRGLEMID----DDEMLVIEYAK-GARLFVAISDLDLIS 496
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + L + GK Q K AE++ ++
Sbjct: 497 KYSGTASE--NAPLHELGGK----------VWQNAKKKAQQTARDTAAELLAIYAAREAA 544
Query: 129 PEKSYS-ERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + ++ + + AI+ + +L
Sbjct: 545 SAQALTFDPHMLAD----FAQQFEYETTPDQQAAIDAVLNDLQQAKP 587
>gi|2393788|gb|AAC45647.1| OrfC [Bacillus subtilis]
Length = 116
Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 55/112 (49%)
Query: 53 DKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDL 112
M + +P K + +R +++ ++ + + + + W +R + KI +G++
Sbjct: 4 SNMTVMIPTSKILSSNIRPVTDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEI 63
Query: 113 IAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
AEVVRDL R + + SE+++ ++A ++ E+ + I+E + +
Sbjct: 64 QEGAEVVRDLMRMKKEKALNASEKKMLDNAYEFLISELEVIKGITEKQIKSF 115
>gi|145630885|ref|ZP_01786662.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
gi|144983545|gb|EDJ91013.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
Length = 564
Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 2 TFQQKRDAMRQ-------GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
+ +++ + G+ +V+ HGVG + + G+K E+ ++ + +
Sbjct: 460 SRDKRKTINPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYAN-E 518
Query: 55 MCLKVPVGKAIDIGMRKLSEAH 76
L VPV I
Sbjct: 519 SKLYVPVTSLHLISRYVGGSDE 540
>gi|253827604|ref|ZP_04870489.1| Transcription-repair-coupling factor [Helicobacter canadensis MIT
98-5491]
gi|253511010|gb|EES89669.1| Transcription-repair-coupling factor [Helicobacter canadensis MIT
98-5491]
Length = 967
Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 17/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T ++ + +TG+++V+ +GV I + + G +F + + + L +PV
Sbjct: 324 TKKRANKILIDELKTGDYVVHIDYGVAVFNGITQANIFGATRDFIELKYLGED-KLLLPV 382
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
I A L + + VK L IA +
Sbjct: 383 ENLDRIDRYI---ADGGIPILDRLGKGSFVKLKE-----------KIKEKLFVIANGIIA 428
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
L + + + + + V + + +AI I +LSS
Sbjct: 429 LAAKRELIDGIIIDTN--KEEILVFQGQSGFVYTKDQNQAIQEIFKDLSSGR 478
>gi|310779687|ref|YP_003968020.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
2926]
gi|309749010|gb|ADO83672.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
2926]
Length = 991
Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/171 (11%), Positives = 57/171 (33%), Gaps = 20/171 (11%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
+ + R G++I++ +GVG I++ + ++ + L VP
Sbjct: 333 IAKDSVKYTNFNQIRPGDYIIHDIYGVGIYLGIEKIDEND-----YLSIKYAGEDKLYVP 387
Query: 61 VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
V I +G + R ++ K+ + E+++
Sbjct: 388 VTGLNRIEKYICE------------KGSTPEIYNLGRRGFRKRREKLKKDIMEFAKELIK 435
Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ S+ ++S+ +++ + + +I ++ ++ S
Sbjct: 436 IQAKRQSKNGFAFSKDTVWQ---EEFEEGFPYNETKDQMRSIEEVKQDMES 483
>gi|260655930|ref|ZP_05861399.1| putative transcription-repair coupling factor [Jonquetella anthropi
E3_33 E1]
gi|260629546|gb|EEX47740.1| putative transcription-repair coupling factor [Jonquetella anthropi
E3_33 E1]
Length = 1023
Score = 69.0 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 46/164 (28%), Gaps = 18/164 (10%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ G+ +++ +GV E ++ E V+ F G R
Sbjct: 371 QNKLSPGQWLIHERYGVCQFLETGREKFGTQSYETLVLGFAD---------------GKR 415
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
+ + + + S+R K + E++ P
Sbjct: 416 LIIPFSDLYKLTIWDGDGEPQADKLGSKRWSGAREKAEAQIEQEAQELLTLYATRAITPG 475
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++++ + + + + +AI I+ ++
Sbjct: 476 RAFAPNGEM---RSLFDQSFPYRETRDQLKAIREIDSDMERPFP 516
>gi|224418280|ref|ZP_03656286.1| transcription-repair coupling factor [Helicobacter canadensis MIT
98-5491]
gi|313141813|ref|ZP_07804006.1| transcription-repair coupling factor [Helicobacter canadensis MIT
98-5491]
gi|313130844|gb|EFR48461.1| transcription-repair coupling factor [Helicobacter canadensis MIT
98-5491]
Length = 1004
Score = 68.7 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 17/172 (9%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T ++ + +TG+++V+ +GV I + + G +F + + + L +PV
Sbjct: 361 TKKRANKILIDELKTGDYVVHIDYGVAVFNGITQANIFGATRDFIELKYLGED-KLLLPV 419
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
I A L + + VK L IA +
Sbjct: 420 ENLDRIDRYI---ADGGIPILDRLGKGSFVKLKE-----------KIKEKLFVIANGIIA 465
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
L + + + + + V + + +AI I +LSS
Sbjct: 466 LAAKRELIDGIIIDTN--KEEILVFQGQSGFVYTKDQNQAIQEIFKDLSSGR 515
>gi|257791039|ref|YP_003181645.1| hypothetical protein Elen_1287 [Eggerthella lenta DSM 2243]
gi|317488244|ref|ZP_07946812.1| hypothetical protein HMPREF1023_00510 [Eggerthella sp. 1_3_56FAA]
gi|257474936|gb|ACV55256.1| hypothetical protein Elen_1287 [Eggerthella lenta DSM 2243]
gi|316912656|gb|EFV34197.1| hypothetical protein HMPREF1023_00510 [Eggerthella sp. 1_3_56FAA]
Length = 179
Score = 68.7 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 18/180 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +VY H V + ++E G F+ + L V V +A +R +
Sbjct: 1 MYACGDTVVYRHH-VCEVAALRENYFEGKDYLELRALFENS-LKLFVAVDEATPDNLRPI 58
Query: 73 SEAHFVERALKLVRGKARVKRTM-----------WSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + + R +EYD ++ + + +++
Sbjct: 59 MSKRAALALIDSIVDADTIDENALKPDAPTPTLLERRMKEEYDKRLRTFAPEDLVPIMKS 118
Query: 122 LHRT-----DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
+H DS + ++++ ++ A + E+A ++ +++ + +
Sbjct: 119 VHERTVRRVDSGRRITATDKKYFDLAEGLLCDELAVSLAVPRENVKDVLVERVKRAEALR 178
>gi|226323668|ref|ZP_03799186.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758]
gi|225207852|gb|EEG90206.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758]
Length = 813
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 55/167 (32%), Gaps = 16/167 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + + G+++V+ HG+G I++ EV + ++ I++ L + +
Sbjct: 133 KISSFSDLKPGDYVVHENHGLGIYRGIEKIEVDKVTKDYMKISYAD-GGNLYILATQLDQ 191
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + K + + +K+ + ++V
Sbjct: 192 IQKYASA------------DAKKPKLNKLGGQEWHRTKSKVKTAVWQIAKDLVELYAVRQ 239
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
S+ Y + +++ M + + AI + ++ S
Sbjct: 240 SKEGFVYEKDTVWQKEFEEMFP---FEETEDQQLAIEATKRDMESPK 283
>gi|327440812|dbj|BAK17177.1| transcriptional regulator, similar to M. xanthus CarD [Solibacillus
silvestris StLB046]
Length = 167
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 56/158 (35%), Gaps = 5/158 (3%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ G+ Y +HG+ I I EQ G + ++V+ ++ + + K+
Sbjct: 1 MYKIGDLTFYKSHGICQIEGIVEQNFTGEPMLYYVMQSKIRPGVTLYHPVESKNSQLEKI 60
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV-----RDLHRTDS 127
+ + + + R + + +++ + + A+++ +DL
Sbjct: 61 LSYDEAVQIMDCFSNEPSEWNDRSTNRQRNHAEILSANNHLEAAQLMNTLLRKDLELQKD 120
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165
+ + + + Q+ + ++ + + I
Sbjct: 121 EKKITSQDSQILQQLSTIILDVLEIALKKPKDTIEKEI 158
>gi|282858160|ref|ZP_06267355.1| transcription-repair-coupling factor [Pyramidobacter piscolens
W5455]
gi|282584082|gb|EFB89455.1| transcription-repair-coupling factor [Pyramidobacter piscolens
W5455]
Length = 990
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/162 (9%), Positives = 48/162 (29%), Gaps = 18/162 (11%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ + +++ +GV + + G E V+ F ++ R +
Sbjct: 345 SLKKDQWVIHEKYGVCQLEGTSVENFGGQDYETIVLRFADNE---------------RLI 389
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ R ++ S+R + K + ++ + + ++
Sbjct: 390 IPTAELFRLTPWNGNGVPELDSLKSKRWRSAWKKAEAQIEAEAQGLLNLYAQRELADGRA 449
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ L R ++ + AI ++ ++ +
Sbjct: 450 FGRDGDL---LKRFEESFPYKETVDQLRAIRDVKHDMERRWP 488
>gi|225389995|ref|ZP_03759719.1| hypothetical protein CLOSTASPAR_03745 [Clostridium asparagiforme
DSM 15981]
gi|225043952|gb|EEG54198.1| hypothetical protein CLOSTASPAR_03745 [Clostridium asparagiforme
DSM 15981]
Length = 145
Score = 68.3 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 50/137 (36%), Gaps = 5/137 (3%)
Query: 36 QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM 95
+ +G ++ + + + + MR++ ER + A
Sbjct: 1 MDFSGSDRLYYSLTPSFENDTTIYIPVDSDKVLMREIMTKQEAERFVLSWPDIACEPHAN 60
Query: 96 WSRRAQEYDAKINSGDLIAIAEVVRDLHR-----TDSQPEKSYSERQLYESALNRMVREI 150
+ +A+ + + SG+ + + +++++ R S S ++R + + A + E+
Sbjct: 61 YKEQAKAHQQILKSGNCLELGSMIKEITRQSISGKRSGKAMSGNQRDVIKIAQKLLYGEL 120
Query: 151 AAVNSISEPEAINLIEV 167
+ I + IE
Sbjct: 121 SVALDIEPAKIPEYIEK 137
>gi|325830786|ref|ZP_08164170.1| CarD-like protein [Eggerthella sp. HGA1]
gi|325487193|gb|EGC89636.1| CarD-like protein [Eggerthella sp. HGA1]
Length = 179
Score = 67.9 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 18/180 (10%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+ +VY H V + ++E G F+ + L V V +A +R +
Sbjct: 1 MYACGDTVVYRHH-VCEVAALRENYFEGKDYLELRALFENS-LKLFVAVDEATPDNLRPV 58
Query: 73 SEAHFVERALKLVRGKARVKRTM-----------WSRRAQEYDAKINSGDLIAIAEVVRD 121
+ + + R +EYD ++ + + +++
Sbjct: 59 MSKRKALALIDSIVDADTIDENALKPDAPTPTLLERRMKEEYDKRLRTFAPEDLIPIMKS 118
Query: 122 LHRT-----DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
+H DS + ++++ ++ A + E+A ++ +++ + +
Sbjct: 119 VHERSVRRVDSGRRITATDKKYFDLAEGLLCDELAVSLAVPRENVKDVLVERVKQAEALR 178
>gi|330881518|gb|EGH15667.1| transcription-repair coupling factor [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 597
Score = 67.9 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 13/126 (10%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
S + + S Q+ K AE++ R ++
Sbjct: 537 GS------------DDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 584
Query: 132 SYSERQ 137
++++ +
Sbjct: 585 AFADPK 590
>gi|283954648|ref|ZP_06372166.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
[Campylobacter jejuni subsp. jejuni 414]
gi|283793840|gb|EFC32591.1| LOW QUALITY PROTEIN: transcription-repair coupling factor
[Campylobacter jejuni subsp. jejuni 414]
Length = 640
Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 16/162 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G++IV+ +GVG ++ V+G K EF V ++ L +PV I
Sbjct: 4 DELKNGDYIVHEDYGVGKFLGLEMIVVSGSKKEF-VAIEYQNSDKLLLPVENLYLIDKYL 62
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + + + I S +I A+ R L +
Sbjct: 63 GVSGS-----IPSLDKLGKTTFVKLKEKLKTKLLAIASEIVIMAAK--RSLVQAKKIKVD 115
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +A + + + +A I + S
Sbjct: 116 LSKQADFIANA--------GFIYTSDQDKACYEILQDFQSGK 149
>gi|323483615|ref|ZP_08088999.1| hypothetical protein HMPREF9474_00748 [Clostridium symbiosum
WAL-14163]
gi|323692577|ref|ZP_08106810.1| hypothetical protein HMPREF9475_01673 [Clostridium symbiosum
WAL-14673]
gi|323403042|gb|EGA95356.1| hypothetical protein HMPREF9474_00748 [Clostridium symbiosum
WAL-14163]
gi|323503443|gb|EGB19272.1| hypothetical protein HMPREF9475_01673 [Clostridium symbiosum
WAL-14673]
Length = 163
Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 5/157 (3%)
Query: 15 RTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74
G+++V+ + V + ++ E + G K +F++ +DK + + +R +
Sbjct: 2 NKGDYMVHWSGKVCMVEDMAEMNLTGTKRMYFILTPVRDKAEKIYVPIEKTEGTLRPVLS 61
Query: 75 AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-----P 129
+R ++ +RAQEY S D + + + ++L++
Sbjct: 62 RKEAVSLAGRIRDIEPLQIKDEKQRAQEYKTAYYSQDYLNLVRIAKELYQRKESRGREGK 121
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166
+ + Q+ E+A + E N++E
Sbjct: 122 KLPSKDAQMMLLVEKTFEEEMAVALGVETSEVKNMLE 158
>gi|237743139|ref|ZP_04573620.1| transcription-repair coupling factor [Fusobacterium sp. 7_1]
gi|229433435|gb|EEO43647.1| transcription-repair coupling factor [Fusobacterium sp. 7_1]
Length = 979
Score = 67.5 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ E ++ D+ L VPV I
Sbjct: 333 DEIKEQDYVIHENFGVGIFLGLENIEGQD-----YLKIKYADEDKLFVPVDSINKIEKYI 387
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ ++ R + R+ + I +++ + ++
Sbjct: 388 --------NISDVIPEIYKLGRKGFKRKKAKLSE--------DIEIFAKEIIKIQAKRNL 431
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + ++ +AI ++ ++ S
Sbjct: 432 GNGFKFSKDTVMQEEFEETFPFTETPAQLKAIEDVKRDMESGK 474
>gi|256028682|ref|ZP_05442516.1| transcription-repair coupling factor [Fusobacterium sp. D11]
gi|289766594|ref|ZP_06525972.1| transcription-repair coupling factor [Fusobacterium sp. D11]
gi|289718149|gb|EFD82161.1| transcription-repair coupling factor [Fusobacterium sp. D11]
Length = 963
Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ E ++ D+ L VPV I
Sbjct: 318 DEIKEQDYVIHENFGVGIFLGLENIEGQD-----YLKIKYADEDKLFVPVDSINKIEKYI 372
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ ++ R + R+ + I +++ + ++
Sbjct: 373 --------NISDVIPEIYKLGRKGFKRKKAKLSE--------DIEIFAKEIIKIQAKRNL 416
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + ++ +AI ++ ++ S
Sbjct: 417 GNGFKFSKDTVMQEEFEETFPFTETPAQLKAIEDVKRDMESGK 459
>gi|254302466|ref|ZP_04969824.1| transcription-repair coupling factor (TRCF) [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
gi|148322658|gb|EDK87908.1| transcription-repair coupling factor (TRCF) [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 981
Score = 67.5 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ + ++ D+ L VPV I
Sbjct: 333 DEIKEQDYVIHENFGVGIFLGLENIDGQD-----YLKIKYADEDKLYVPVDSINKIEKYI 387
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ ++ R + R+ + I +++ + ++
Sbjct: 388 --------NISDIIPEIYKLGRKGFKRKKAKLSE--------DIEIFAKEIIKIQAKRNL 431
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + ++ +AI ++ ++ S
Sbjct: 432 GNGFKFSKDTVMQEEFEETFPFTETPAQLKAIEDVKRDMESGK 474
>gi|294784401|ref|ZP_06749692.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_27]
gi|294487973|gb|EFG35328.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_27]
Length = 981
Score = 67.1 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ E ++ D+ L VPV I
Sbjct: 333 DEIKEQDYVIHENFGVGIFLGLENIEGQD-----YLKIKYADEDKLFVPVDSINKI---- 383
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ ++ R + R+ + I +++ + ++
Sbjct: 384 ----EKFINISDVIPEIYKLGRKGFKRKKDKLSE--------DIEIFAKEIIKIQAKRNL 431
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + ++ +AI ++ ++ S
Sbjct: 432 GNGFKFSKDTVMQEEFEETFPFTETPAQSKAIEDVKRDMESGK 474
>gi|34763024|ref|ZP_00144000.1| Transcription-repair coupling factor [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887325|gb|EAA24419.1| Transcription-repair coupling factor [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 805
Score = 67.1 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ E ++ D+ L VPV I
Sbjct: 157 DEIKEQDYVIHENFGVGIFLGLENIEGQD-----YLKIKYADEDKLFVPVDSINKI---- 207
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ ++ R + R+ + I +++ + ++
Sbjct: 208 ----EKFINISDIIPEIYKLGRKGFKRKKDKLSE--------DIEIFAKEIIKIQAKRNL 255
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + ++ +AI ++ ++ S
Sbjct: 256 GNGFKFSKDTVMQEEFEETFPFTETPAQLKAIEDVKRDMESGK 298
>gi|308387853|pdb|3MLQ|E Chain E, Crystal Structure Of The Thermus Thermophilus
Transcription-Repair Coupling Factor Rna Polymerase
Interacting Domain With The Thermus Aquaticus Rna
Polymerase Beta1 Domain
gi|308387854|pdb|3MLQ|F Chain F, Crystal Structure Of The Thermus Thermophilus
Transcription-Repair Coupling Factor Rna Polymerase
Interacting Domain With The Thermus Aquaticus Rna
Polymerase Beta1 Domain
gi|308387855|pdb|3MLQ|G Chain G, Crystal Structure Of The Thermus Thermophilus
Transcription-Repair Coupling Factor Rna Polymerase
Interacting Domain With The Thermus Aquaticus Rna
Polymerase Beta1 Domain
gi|308387856|pdb|3MLQ|H Chain H, Crystal Structure Of The Thermus Thermophilus
Transcription-Repair Coupling Factor Rna Polymerase
Interacting Domain With The Thermus Aquaticus Rna
Polymerase Beta1 Domain
Length = 71
Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G+++++P HGVG ++ +EV G+K ++ V+ K + L +PV + + +
Sbjct: 5 PGDYLIHPEHGVGQYLGLETREVLGVKRDYLVL-RYKGEGKLYLPVEQLPLLKRHPGTTD 63
Query: 76 HFVE 79
E
Sbjct: 64 DPPE 67
>gi|296328784|ref|ZP_06871298.1| transcription-repair coupling factor [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|296154119|gb|EFG94923.1| transcription-repair coupling factor [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 981
Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ E ++ D+ L VPV I
Sbjct: 333 DEIKEQDYVIHENFGVGIFLGLENIEGQD-----YLKIKYADEDKLFVPVDSINKI---- 383
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ ++ R + R+ + I +++ + ++
Sbjct: 384 ----EKFINISDVIPEIYKLGRKGFKRKKDKLSE--------DIEIFAKEIIKIQAKRNL 431
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + ++ +AI ++ ++ S
Sbjct: 432 GNGFKFSKDTVMQEEFEETFPFTETPAQLKAIEDVKRDMESGK 474
>gi|19703371|ref|NP_602933.1| transcription-repair coupling factor [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19713435|gb|AAL94232.1| Transcription-repair coupling factor [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 981
Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ E ++ D+ L VPV I
Sbjct: 333 DEIKEQDYVIHENFGVGIFLGLENIEGQD-----YLKIKYADEDKLFVPVDSINKI---- 383
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
E+ + + + + ++ + I +++ + ++
Sbjct: 384 -------EKFINISDVIPEIYKLGRKGFKRK-----KAKLSEDIEIFAKEIIKIQAKRNL 431
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + ++ +AI ++ ++ S
Sbjct: 432 GNGFKFSKDTVMQEEFEETFPFTETPAQSKAIEDVKRDMESGK 474
>gi|309799277|ref|ZP_07693525.1| transcription-repair coupling factor [Streptococcus infantis
SK1302]
gi|308117122|gb|EFO54550.1| transcription-repair coupling factor [Streptococcus infantis
SK1302]
Length = 570
Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G+++V+ HG+G I+ E+ G+ + +V ++ + +PV + +
Sbjct: 490 DLQKGDYVVHQIHGIGQYLGIETIEIKGIHRD-YVSVLYQNGDRISIPVEQIQTLSKYVS 548
Query: 73 SEAHFVE 79
S+ +
Sbjct: 549 SDGKAPK 555
>gi|256846696|ref|ZP_05552152.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_36A2]
gi|256717916|gb|EEU31473.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_36A2]
Length = 981
Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ + ++ D+ L VPV I
Sbjct: 333 DEIKEQDYVIHENFGVGIFLGLENIDGQD-----YLKIKYADEDKLFVPVDSINKI---- 383
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ ++ R + R+ + I +++ + ++
Sbjct: 384 ----EKFINISDVIPEIYKLGRKGFKRKKDKLSE--------DIEIFAKEIIKIQAKRNL 431
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + ++ +AI ++ ++ S
Sbjct: 432 GNGFKFSKDTVMQEEFEETFPFTETPAQSKAIEDVKRDMESGK 474
>gi|296272208|ref|YP_003654839.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM
7299]
gi|296096383|gb|ADG92333.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM
7299]
Length = 989
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +V+ HG+G I+ V G K +F VI ++ L +PV I
Sbjct: 354 DELLVNDFVVHEQHGIGQYKGIEPVVVMGAKRDF-VIVAYANEDKLLIPVENIDLIDRY- 411
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ + + AK+ + + D+ + + E
Sbjct: 412 -VADGSSYAVVDTLGKGS--------------FAKLKDKVKDRLFAIANDIIKLAAAREL 456
Query: 132 SYSER-QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + L + + +IN + +LSS
Sbjct: 457 VNGIKINCDKKILKDFSTSAGFDYTKDQKRSINELFDDLSSGK 499
>gi|237740991|ref|ZP_04571472.1| transcription-repair coupling factor [Fusobacterium sp. 4_1_13]
gi|229431035|gb|EEO41247.1| transcription-repair coupling factor [Fusobacterium sp. 4_1_13]
Length = 981
Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 55/162 (33%), Gaps = 20/162 (12%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ + ++ D+ L VPV I
Sbjct: 333 DEIKEQDYVIHENFGVGIFLGLENIDGQD-----YLKIKYADEDKLFVPVDSINKI---- 383
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
E+ + + V + ++ K++ I E+++ + +
Sbjct: 384 -------EKFINISDVIPEVYKLGRKGFKRK-KDKLSEDIEIFAKEIIKIQAKRNLGNGF 435
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+S+ + + + ++ +AI ++ ++ S
Sbjct: 436 KFSKDTVMQ---EEFEETFPFTETPAQLKAIEDVKRDMESGK 474
>gi|297518235|ref|ZP_06936621.1| transcription-repair coupling factor [Escherichia coli OP50]
Length = 542
Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
G+ +V+ HGVG + E G+ E+ + + L VPV I
Sbjct: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL-MLTYANDAKLYVPVSSLHLISRYAG 534
Query: 73 SEAHF 77
Sbjct: 535 GAEEN 539
>gi|260495382|ref|ZP_05815509.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_33]
gi|260197160|gb|EEW94680.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_33]
Length = 731
Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ +++++ GVG ++ + ++ D+ L VPV I
Sbjct: 83 DEIKEQDYVIHENFGVGIFLGLENIKGQD-----YLKIKYADEDKLFVPVDSINKIEKYI 137
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
++ ++ R + R+ + I +++ + ++
Sbjct: 138 --------NISDVIPEIYKLGRKGFKRKKAKLSE--------DIEIFAKEIIKIQAKRNL 181
Query: 132 SYSERQLYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + ++ +AI ++ ++ S
Sbjct: 182 GNGFKFSKDTVMQEEFEETFPFTETPAQLKAIEDVKRDMESGK 224
>gi|255543481|ref|XP_002512803.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547814|gb|EEF49306.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 857
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 12/160 (7%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
+G+++V+ GVG I + +V+ E F + + K + + S
Sbjct: 144 LNSGDYVVHKKVGVGRFVGI-KFDVSKSSTEPIEYVFIEYADGMAKLPVKQASKMLYRYS 202
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ + + RT+ K + IAI ++V DL K
Sbjct: 203 -----------LPNEKKRPRTLNKLNDTSTWEKRKTKGKIAIQKMVVDLMELYLHRLKQR 251
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + +A N +E +L+ +
Sbjct: 252 RPPYPKSPVMAEFTAQFPYEPTPDQFQAFNDVEKDLTERE 291
>gi|116515116|ref|YP_802745.1| hypothetical protein BCc_180 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256970|gb|ABJ90652.1| transcription-repair coupling factor [Buchnera aphidicola str. Cc
(Cinara cedri)]
Length = 683
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 16/161 (9%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
F+ + +++ +G+G ++ + G ++FVI +K+ L VP+ I + K S
Sbjct: 11 FQKNQLVIHTQYGIGRYIDLCTLKNKGKLTDYFVI-MYANKVKLYVPITSLNLINIYKTS 69
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSY 133
+ G T + + YDA + D+ A + + +
Sbjct: 70 NTS---KISLNTLGTKTWLETCKKVKKKIYDAAVELIDIKAHRYCRKGFSFKKNILK--- 123
Query: 134 SERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + +I I ++
Sbjct: 124 ---------YKNFCNKCLYHITLDQKNSIKEIIQDMKKSVP 155
>gi|269122841|ref|YP_003305418.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
moniliformis DSM 12112]
gi|268314167|gb|ACZ00541.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
DSM 12112]
Length = 900
Score = 66.0 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/179 (10%), Positives = 56/179 (31%), Gaps = 29/179 (16%)
Query: 3 FQQKRDAMRQGFR--------TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDK 54
++ ++G + G+++++ G+G ++ D
Sbjct: 265 KSKRERIEKKGIKYSNINQILEGDYVIHVEFGIGIYMGAVNINDRD-----YLYIQYADN 319
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
L +PV K I + G A ++ ++ + + +I
Sbjct: 320 DKLYIPVEKLDRISKYMST-------------GIAPKLYSLGTKGFKRREKRIREDVEKF 366
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E++ + + + L++ + + + + +A+ I+ +L S
Sbjct: 367 AQELINIQAKRKLVRKLPLIKDTLWQ---EEFEEKFSFNLTWDQQKAVEDIKHDLESGR 422
>gi|237736104|ref|ZP_04566585.1| transcription-repair coupling factor [Fusobacterium mortiferum ATCC
9817]
gi|229421815|gb|EEO36862.1| transcription-repair coupling factor [Fusobacterium mortiferum ATCC
9817]
Length = 988
Score = 66.0 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 48/163 (29%), Gaps = 22/163 (13%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G +I++ +GVG I+ + ++ + L VP+ IG
Sbjct: 339 TEIQEGNYIIHENYGVGLYLGIEIIDGHD-----YLKIKYAGEDKLFVPIEGIGKIGKYI 393
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ E +G K + + +++ ++ +
Sbjct: 394 SIDGEIPEIYNLGRKG----------------FRKKREKIAEEMLQFAKEIVEIQARRDL 437
Query: 132 SYSERQLYESA-LNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + S+ +AI ++ ++ S
Sbjct: 438 EAGYSFAPDNLWQEEFEESFPYKETPSQLQAIEDVKRDMESSR 480
>gi|213582461|ref|ZP_03364287.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 283
Score = 66.0 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
G+ +V+ HGVG + E G+K E+ + + L VPV I
Sbjct: 224 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRY 280
>gi|289624078|ref|ZP_06457032.1| transcription-repair coupling factor [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
Length = 578
Score = 65.2 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 17/118 (14%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
S+ L + E K + +V +L ++
Sbjct: 537 GSDDESAP--LHRLGS--------------ETWQKAKRKAAEQVRDVAAELLDIYARR 578
>gi|295103998|emb|CBL01542.1| CarD-like/TRCF domain. [Faecalibacterium prausnitzii SL3/3]
Length = 167
Score = 65.2 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 7/165 (4%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMK-LEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
F+ G +VY GV + + + E++ + + + + +R
Sbjct: 2 SRFQAGALVVYGNLGVHEVEGVGLRRFCDESAREYYTLRPYFSDSHDRSYIPTEKEAALR 61
Query: 71 KLSEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD--- 126
++ A E L ++ K + + + A+ Y A +++ D + ++L +
Sbjct: 62 PVTPAQQAEADLARIKAEKLPIPAGVQTALAEHYQALLHTNDFYQYLTLFKELGQKQTQQ 121
Query: 127 --SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + + Y+ + E+A S+ EA + L
Sbjct: 122 QSRGRKINAMDTYFYQMVERVLREELAVAFGESQQEAGRRLLEVL 166
>gi|160943758|ref|ZP_02090989.1| hypothetical protein FAEPRAM212_01253 [Faecalibacterium prausnitzii
M21/2]
gi|158444932|gb|EDP21935.1| hypothetical protein FAEPRAM212_01253 [Faecalibacterium prausnitzii
M21/2]
Length = 167
Score = 65.2 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 58/165 (35%), Gaps = 7/165 (4%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMK-LEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
F+ G +VY GV + + + E++ + + + + +R
Sbjct: 2 SRFQAGALVVYGNLGVHEVEGVGLRRFCDEPAREYYTLRPYFSDSHDRSYIPTEKEAALR 61
Query: 71 KLSEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD--- 126
++ A L ++ K + + + A+ Y A +++ D + ++L +
Sbjct: 62 PVTPAQQAAADLARIKTEKLPIPAGVQTALAEHYQALLHTNDFYQYLTLFKELGQKQTQQ 121
Query: 127 --SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ + + Y+ + E+A S+ EA + L
Sbjct: 122 QSRGRKINAMDAYFYQMVERVLREELAVAFGESQQEAGRRLLEIL 166
>gi|109946913|ref|YP_664141.1| transcription-repair coupling factor [Helicobacter acinonychis str.
Sheeba]
gi|109714134|emb|CAJ99142.1| transcription-repair coupling factor [Helicobacter acinonychis str.
Sheeba]
Length = 1004
Score = 65.2 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 16/161 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
GE +V+ +GVG +++ + V G K +F IA+ + L +PV I
Sbjct: 360 ELNAGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGED-KLLLPVENLHLIARYVA 418
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + + AK+ + L ++++ +L +
Sbjct: 419 QSDSVPTK------------DRLGKGSFLKLKAKVRTKLLEIASKII-ELAAERNLILGK 465
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ L E L + + +AI I +L S
Sbjct: 466 KMDTHLAE--LEIFKTHAGFEYTNDQEKAIAEISKDLGSHR 504
>gi|221370025|ref|YP_002521121.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
KD131]
gi|221163077|gb|ACM04048.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
KD131]
Length = 1059
Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 21/165 (12%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
G+ +V+ G+G + ++ G + L VPV +A I
Sbjct: 407 PDALAEGDLVVHEDRGLGRLQGLEPL--PGADGREAIRLGYASDQHLLVPVEEAGRIWRY 464
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
++R + W+ R ++ D IAE R L +
Sbjct: 465 GTGADVSLDRL----------NGSAWTNRRKKLDE--------GIAEAARALVSAAKERA 506
Query: 131 KSYSERQ-LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ R S + AI + +L +
Sbjct: 507 AKSARSFEPPPDIYERFAGRFPFTLSADQRRAIAEVRDDLVAGRP 551
>gi|27379778|ref|NP_771307.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
110]
gi|27352931|dbj|BAC49932.1| bll4667 [Bradyrhizobium japonicum USDA 110]
Length = 1093
Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 16/158 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G +V+ G+ + ++ G L + + VP +
Sbjct: 449 GTVVVHLQRGLAVLDGLQTVNTGGGALREMIRLVFAGDNAVLVPPPDLALMWPY---ATE 505
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
+ AL G + W+RR + +G ++A R R D
Sbjct: 506 PGKLALDKADGSSW-----WARRTEAEREIQIAGKVLAKHISQRRRRRADKLVPPG---- 556
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
SA + V ++ + +AI + +L+S
Sbjct: 557 ----SAYEKFVARFPYFTTVDQAKAIRDVLEDLASGHP 590
>gi|237752073|ref|ZP_04582553.1| transcription-repair coupling factor [Helicobacter winghamensis
ATCC BAA-430]
gi|229376640|gb|EEO26731.1| transcription-repair coupling factor [Helicobacter winghamensis
ATCC BAA-430]
Length = 1011
Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 56/171 (32%), Gaps = 16/171 (9%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62
+ K + + G+++V+ +G+ + I + + G +F + + + L +PV
Sbjct: 363 KRAKVKILLDELKVGDYVVHCDYGIAIFSGITQANIFGATRDFIALRYLGED-KLLLPVE 421
Query: 63 KAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I L + GK + + + + L A E++ +
Sbjct: 422 NLDRIDRY--IADSGGIPILDKL-GKGSFAKLKEKVKEKLFVIANAIIALAAKRELIDGV 478
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ E + + + +A+N I +LSS
Sbjct: 479 VFDVQKEEIL------------LFQNKSGFHYTEDQTQAVNEIFKDLSSGK 517
>gi|317060106|ref|ZP_07924591.1| transcription-repair coupling factor [Fusobacterium sp. D12]
gi|313685782|gb|EFS22617.1| transcription-repair coupling factor [Fusobacterium sp. D12]
Length = 752
Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 20/160 (12%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ GE+I++ +GVG I+ + + D+ L VP+ I
Sbjct: 163 PDQIQEGEYIIHENYGVGLYLGIELIDGKD-----YFKIKYADEDKLFVPLESIHKIEKY 217
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
V G + +R Q K+ L E+V R +S
Sbjct: 218 V------------HVPGVVPEIYHLGTRGFQRKREKLQEEILEFAKEIVEIQARRNSTQG 265
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
YS +++ + ++ +AI ++ ++
Sbjct: 266 FRYSSDTVWQ---EEFEESFPYTETAAQKKAIQDVKQDME 302
>gi|257470409|ref|ZP_05634500.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC
49185]
gi|317064617|ref|ZP_07929102.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC
49185]
gi|313690293|gb|EFS27128.1| transcription-repair coupling factor [Fusobacterium ulcerans ATCC
49185]
Length = 983
Score = 64.4 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 56/167 (33%), Gaps = 20/167 (11%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ R + I++ +GVG I+ ++ D+ L VPV
Sbjct: 330 KYKDVSQIRENDFIIHENYGVGIYQGIETMNGQD-----YLKIKYADEDKLFVPVEGINK 384
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + ++ ++ R + R+ Q+ + ++ + I +
Sbjct: 385 IEKYVSTPG--------VIPDIYQLGRRGFKRKRQKLEEEMVAFAKEIIEIQAK----RA 432
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++S +++ + S+ +AI ++ ++ S
Sbjct: 433 FEKGYAFSHDTVWQ---EEFEESFPYKETASQLKAIEDVKRDMESDR 476
>gi|257462445|ref|ZP_05626858.1| transcription-repair coupling factor [Fusobacterium sp. D12]
Length = 781
Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 20/160 (12%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
+ GE+I++ +GVG I+ + + D+ L VP+ I
Sbjct: 192 PDQIQEGEYIIHENYGVGLYLGIELIDGKD-----YFKIKYADEDKLFVPLESIHKIEKY 246
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
V G + +R Q K+ L E+V R +S
Sbjct: 247 V------------HVPGVVPEIYHLGTRGFQRKREKLQEEILEFAKEIVEIQARRNSTQG 294
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
YS +++ + ++ +AI ++ ++
Sbjct: 295 FRYSSDTVWQ---EEFEESFPYTETAAQKKAIQDVKQDME 331
>gi|308803831|ref|XP_003079228.1| putative helicase (ISS) [Ostreococcus tauri]
gi|116057683|emb|CAL53886.1| putative helicase (ISS) [Ostreococcus tauri]
Length = 905
Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 15/162 (9%)
Query: 17 GEHIVYPAHGVGTITEIKEQEV----AGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
GE +V+ +G+G +K V K + F+ +D P + +
Sbjct: 232 GEFVVHRKYGIGQYLGLKVLPVDQPNGDTKNKPFLFLKYQDATAKISPEASRRLL--YRF 289
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ + KL + K T W R ++ +A I + + ++ L + E
Sbjct: 290 CSPGALVKPPKLNKLKDS---TTWDLREKKTEATIRRLVVNQMVIYLQRLQTIRNPYELP 346
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+E ++ + + + A+ I ++LS +
Sbjct: 347 PAE------SVEAFDKSFPYKLTPDQVRAVEDITIDLSRDAP 382
>gi|326492798|dbj|BAJ90255.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 631
Score = 63.7 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 18/152 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ GE++V+ GVG I +G E +V K+ V +A +
Sbjct: 146 VDPRELEPGEYVVHKKVGVGKFVCI-----SGEDGEDYVFIQY-ADAMAKLAVDQAARML 199
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R + + + R + K +A+ ++V +L Q
Sbjct: 200 YRY------------NLPHEKKRPRNLSKLNDPSAWEKRRLKGKLAVQKMVVNLMELYLQ 247
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPE 160
+ A+++ E + + +
Sbjct: 248 RMRQRRPPYRKPEAMDQFASEFPYEPTPDQNQ 279
>gi|302335359|ref|YP_003800566.1| hypothetical protein Olsu_0571 [Olsenella uli DSM 7084]
gi|301319199|gb|ADK67686.1| conserved hypothetical protein [Olsenella uli DSM 7084]
Length = 165
Score = 63.7 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G++IV+P GV + EI +++ + + M + PV +R +
Sbjct: 1 MYEVGQYIVHPGQGVCKVEEIVS---DPVQVYMLMPVGGRHPMRISFPVASEG--RLRPV 55
Query: 73 SEAHFVERALKLVRGKARVKRTMWSR--RAQEYDAKINSGDLIAIAEVVRDLHRTDS--- 127
+ + A + S + Y ++ G + + +
Sbjct: 56 LSRSEARQLIGEYDEMALEDFSCNSSALEEEHYKNEMRRGTCRDSVRIAKTFRKRIDDVR 115
Query: 128 --QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + A R + E+A ++ + + +
Sbjct: 116 ACNKKPPVVYERILKQARERSLAELAVALDVTPDDVSVMFRREMGEAEE 164
>gi|220930375|ref|YP_002507284.1| hypothetical protein Ccel_3010 [Clostridium cellulolyticum H10]
gi|220000703|gb|ACL77304.1| hypothetical protein Ccel_3010 [Clostridium cellulolyticum H10]
Length = 162
Score = 63.7 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 61/161 (37%), Gaps = 9/161 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F TGE+++ GV + +I E + + + + + VP ++ +I +R +
Sbjct: 1 MFNTGEYVICSQGGVWKVMDIVE--------DKYHLQKHESGDRIIVPTTESGEI-VRGI 51
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
S + + V +K R + Y+ + D + ++++ +
Sbjct: 52 SSKEKILDVINRVDFITTIKAPNDKIRKELYEDALKEFDEVGWIKIIKSSYLRKQDGRLM 111
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
E + E A + + EI+ V I + I +S+
Sbjct: 112 QGETEYAEMAKSYLHGEISVVMGIPVNKVEGYISTAVSNDK 152
>gi|90418629|ref|ZP_01226540.1| putative transcription-repair coupling factor [Aurantimonas
manganoxydans SI85-9A1]
gi|90336709|gb|EAS50414.1| putative transcription-repair coupling factor [Aurantimonas
manganoxydans SI85-9A1]
Length = 1128
Score = 63.7 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 19/170 (11%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE---FFVIAFDKDKMCLKVPVGKA 64
F TG+ +V+ HGV + + + G + + ++ L VP+
Sbjct: 449 APQVDTFMTGDRVVHIEHGVAVLDGLVPIDPNGNGGDPEGEALSLRYRNDETLLVPMSDI 508
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
+ + L ++G+ RR + + A + D +V L
Sbjct: 509 GAV---WRCGGASTDVTLDDLKGRTWQ-----KRRDEIFGAISVTADR-----MVERLTE 555
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + R A + + A + +L+S
Sbjct: 556 KAEAKAPKIVPDRV---SFERFCARFAYELTADQNNACLDVLDDLASGRP 602
>gi|257484414|ref|ZP_05638455.1| transcription-repair coupling factor [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 546
Score = 63.7 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
R G +V+ HGVG + EV EF + + L VPV I
Sbjct: 478 TELREGAPVVHIDHGVGRYLGLATLEVENQVAEFL-MLAYAEDAKLYVPVANLHLIARYT 536
Query: 72 LSEAH 76
S+
Sbjct: 537 GSDDE 541
>gi|237738602|ref|ZP_04569083.1| transcription-repair coupling factor [Fusobacterium sp. 2_1_31]
gi|229424085|gb|EEO39132.1| transcription-repair coupling factor [Fusobacterium sp. 2_1_31]
Length = 979
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/157 (8%), Positives = 50/157 (31%), Gaps = 22/157 (14%)
Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77
+++++ GVG ++ + ++ D+ L VP+ I
Sbjct: 339 DYVIHENFGVGIFLGLENIDGQD-----YLKIKYADEDKLYVPLDGINKIEKYI------ 387
Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQ 137
++ ++ R + R+ I +++ + ++ + +
Sbjct: 388 --NISDVIPEIYKLGRKGFKRKKARLSE--------DIEIFAKEIIKIQAKRNLANGFKF 437
Query: 138 LYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + + +AI ++ ++ S
Sbjct: 438 SKDTVMQEEFEEAFPFTETPGQLKAIEDVKRDMESGK 474
>gi|294781777|ref|ZP_06747110.1| transcription-repair coupling factor [Fusobacterium sp. 1_1_41FAA]
gi|294481887|gb|EFG29655.1| transcription-repair coupling factor [Fusobacterium sp. 1_1_41FAA]
Length = 979
Score = 63.3 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/157 (8%), Positives = 50/157 (31%), Gaps = 22/157 (14%)
Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77
+++++ GVG ++ + ++ D+ L VP+ I
Sbjct: 339 DYVIHENFGVGIFLGLENIDGQD-----YLKIKYADEDKLYVPLDGINKIEKYI------ 387
Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQ 137
++ ++ R + R+ I +++ + ++ + +
Sbjct: 388 --NISDVIPEIYKLGRKGFRRKKARLSE--------DIEIFAKEIIKIQAKRNLANGFKF 437
Query: 138 LYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + + +AI ++ ++ S
Sbjct: 438 SKDTVMQEEFEEAFPFTETPGQLKAIEDVKRDMESGK 474
>gi|262066822|ref|ZP_06026434.1| transcription-repair coupling factor [Fusobacterium periodonticum
ATCC 33693]
gi|291379488|gb|EFE87006.1| transcription-repair coupling factor [Fusobacterium periodonticum
ATCC 33693]
Length = 978
Score = 63.3 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/157 (8%), Positives = 50/157 (31%), Gaps = 22/157 (14%)
Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77
+++++ GVG ++ + ++ D+ L VP+ I
Sbjct: 339 DYVIHENFGVGIFLGLENIDGQD-----YLKIKYADEDKLYVPLDGINKIEKYI------ 387
Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQ 137
++ ++ R + R+ I +++ + ++ + +
Sbjct: 388 --NISDVIPEIYKLGRKGFRRKKARLSE--------DIEIFAKEIIKIQAKRNLANGFKF 437
Query: 138 LYESALN-RMVREIAAVNSISEPEAINLIEVNLSSKS 173
++ + + + +AI ++ ++ S
Sbjct: 438 SKDTVMQEEFEEAFPFTETPGQLKAIEDVKRDMESGK 474
>gi|126464290|ref|YP_001045403.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|126106101|gb|ABN78631.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 1059
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 19/164 (11%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMR 70
G+ +V+ G+G + ++ G + L VPV +A I
Sbjct: 407 PDALAEGDFVVHEDRGLGRLQGLEPL--PGADGREAIRLGYAADQHLLVPVEEAGRIWRY 464
Query: 71 KLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPE 130
++R W+ R ++ D + A+ ++ ++
Sbjct: 465 GTGADVSLDRL----------NGAAWTNRRKKLDE-GIAEAARALVAAAKERAAKSARAF 513
Query: 131 KSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S+ R S + AI + +L +
Sbjct: 514 EPPSD------IYERFAGRFPFTLSPDQRRAIAEVRDDLVAGRP 551
>gi|253582570|ref|ZP_04859791.1| transcription-repair coupling factor [Fusobacterium varium ATCC
27725]
gi|251835440|gb|EES63980.1| transcription-repair coupling factor [Fusobacterium varium ATCC
27725]
Length = 983
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 58/167 (34%), Gaps = 20/167 (11%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ R + I++ +GVG I+ ++ D+ L VPV
Sbjct: 330 KYKDVSQIRENDFIIHENYGVGIYQGIETMNGQD-----YLKIKYADEDKLFVPVEGINK 384
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + +V ++ R + R+ Q+ + ++ +I E++ +
Sbjct: 385 IEKYVSTPG--------VVPDIYQLGRRGFKRKRQKLEEEM----IIFAKEIIEIQAKRA 432
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +S +++ + S+ +AI ++ ++ S
Sbjct: 433 FEKGYVFSHDTVWQ---EEFEESFPYKETASQLKAIEDVKRDMESDR 476
>gi|224069623|ref|XP_002303013.1| predicted protein [Populus trichocarpa]
gi|222844739|gb|EEE82286.1| predicted protein [Populus trichocarpa]
Length = 939
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 14/167 (8%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+G+++V+ G+G IK + + +V K+PV +A
Sbjct: 132 KVDPYTLSSGDYVVHKKVGIGRFVGIKFDMSKGSSEAIEYVFIEY-ADGMAKLPVKQASR 190
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ R + + RT+ + + +AI ++V DL
Sbjct: 191 MLYRY------------NLPNDTKKPRTLSKLSDNGAWERRKTKGKVAIQKMVVDLMELY 238
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
K A+ + + + +A + +L+ +
Sbjct: 239 LHRLKQRRPPYPKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDLTERE 285
>gi|221195565|ref|ZP_03568620.1| hypothetical protein ATORI0001_0888 [Atopobium rimae ATCC 49626]
gi|221184752|gb|EEE17144.1| hypothetical protein ATORI0001_0888 [Atopobium rimae ATCC 49626]
Length = 166
Score = 62.5 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 49/159 (30%), Gaps = 12/159 (7%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ G ++V+P GV I+ + + G ++ + K +++ + +R +
Sbjct: 1 MYAVGNYVVHPGQGVCQISAV----IQGSDG-YYTLVPISHKHPIQITFPLVQEARLRSV 55
Query: 73 SEAHFVERALKLVRGKA--RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRT 125
+ + + + S + I G + + H
Sbjct: 56 LSSKEAKVLIDKYPAISLNTFHVHNNSLEEAHFRQAIREGSCEDTMSIAKTFRARITHAR 115
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
S ++++ A R + E+A S +
Sbjct: 116 GQNKRPPVSHERIFKMASMRSLYELAVALDTSTDDIQAK 154
>gi|312282627|dbj|BAJ34179.1| unnamed protein product [Thellungiella halophila]
Length = 823
Score = 62.5 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 47/158 (29%), Gaps = 14/158 (8%)
Query: 17 GEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G+++V+ G+G IK + + +V D M + + L
Sbjct: 145 GDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNE 204
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
R L + + + + +AI ++V DL +
Sbjct: 205 TKRPRTLSRLSDTSV-------------WERRKTKGKVAIQKMVVDLMELYLHRLRQKRY 251
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + +A ++ +L+ +
Sbjct: 252 PYPKNPIMADFAAQFPYNATPDQKQAFLDVDKDLTERE 289
>gi|320528182|ref|ZP_08029347.1| hypothetical protein HMPREF9430_01471 [Solobacterium moorei F0204]
gi|320131530|gb|EFW24095.1| hypothetical protein HMPREF9430_01471 [Solobacterium moorei F0204]
Length = 169
Score = 62.5 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 54/163 (33%), Gaps = 7/163 (4%)
Query: 14 FRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLS 73
++ + +VY V IT K + G + F +R L
Sbjct: 5 YKVKDIVVYRRD-VCRITGKKRSDFTGEQCYILEPYFPTSGSVSIQVPVSNKAGHIRDLI 63
Query: 74 EAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD-----SQ 128
+ + + ++ + ++Q Y + + D+ + +++ + +
Sbjct: 64 TKEEINQLIIDTPDLETLESKPANMKSQ-YASLLKGNDISELVRIIKTSYGRNQERLEQH 122
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
+ + + + + A + E++ V +S + E ++
Sbjct: 123 KKLASIDDEYLQIAEKYLYEELSVVLDLSIEDTKEYFEKEVAK 165
>gi|167754860|ref|ZP_02426987.1| hypothetical protein CLORAM_00364 [Clostridium ramosum DSM 1402]
gi|237735408|ref|ZP_04565889.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167704910|gb|EDS19489.1| hypothetical protein CLORAM_00364 [Clostridium ramosum DSM 1402]
gi|229381153|gb|EEO31244.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 148
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
++ ++I++ + + I I ++ + + + + +RK+
Sbjct: 1 MYKINDYIIHKNNHLYQIIAI--------HNHTCILTTWQTNETIITNITEL----VRKV 48
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
A +E ++ + + T R + Y ++ D + ++++ ++ + +
Sbjct: 49 ITASEMEEIVERIPYIRTLNITSERYRQELYQKSLDKYDEVEWIKLIKTIYIRHQKKQTQ 108
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
E + +++A N EI+ + +I P+ I+ +
Sbjct: 109 NYELKYFKAAKNIFHEEISLLLNIPLPKIETYIKQKI 145
>gi|297832728|ref|XP_002884246.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
lyrata]
gi|297330086|gb|EFH60505.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
lyrata]
Length = 823
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 47/158 (29%), Gaps = 14/158 (8%)
Query: 17 GEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G+++V+ G+G IK + + +V D M + + L
Sbjct: 145 GDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNE 204
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
R L + + + + +AI ++V DL +
Sbjct: 205 TKRPRTLSRLSDTSV-------------WERRKTKGKVAIQKMVVDLMELYLHRLRQKRY 251
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + +A +E +L+ +
Sbjct: 252 PYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERE 289
>gi|220921591|ref|YP_002496892.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219946197|gb|ACL56589.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
ORS 2060]
Length = 1091
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 42/158 (26%), Gaps = 16/158 (10%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ ++ HG+ ++ + E D L P+ +A I +
Sbjct: 438 GDVAIHEDHGLCVFEGLEPVGGPDGEAEEAARLRFADDAVLLAPLSQADRIWRYGSAAEA 497
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
L + G KR + + R +R
Sbjct: 498 VS---LDRLDGGTWEKRRA--------TVAAAVAATARRMLDLAETRRRARAEPLIPPDR 546
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Q+ R + + AI+ + +L++
Sbjct: 547 QM-----ERFCAGFGFSLTPDQAAAIDAVLEDLAAGRP 579
>gi|326504336|dbj|BAJ91000.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 281
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 18/153 (11%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ GE++V+ GVG I +G E +V K+ V +A +
Sbjct: 146 VDPRELEPGEYVVHKKVGVGKFVCI-----SGEDGEDYVFIQY-ADAMAKLAVDQAARML 199
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
R + + + R + K +A+ ++V +L Q
Sbjct: 200 YRY------------NLPHEKKRPRNLSKLNDPSAWEKRRLKGKLAVQKMVVNLMELYLQ 247
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
+ A+++ E + + +
Sbjct: 248 RMRQRRPPYRKPEAMDQFASEFPYEPTPDQNQV 280
>gi|18396054|ref|NP_566160.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
gi|332640233|gb|AEE73754.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
Length = 823
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 47/158 (29%), Gaps = 14/158 (8%)
Query: 17 GEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G+++V+ G+G IK + + +V D M + + L
Sbjct: 145 GDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNE 204
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
R L + + + + +AI ++V DL +
Sbjct: 205 TKRPRTLSRLSDTSV-------------WERRKTKGKVAIQKMVVDLMELYLHRLRQKRY 251
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + +A +E +L+ +
Sbjct: 252 PYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERE 289
>gi|145331730|ref|NP_001078092.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
gi|6513947|gb|AAF14851.1|AC011664_33 putative helicase [Arabidopsis thaliana]
gi|332640234|gb|AEE73755.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
Length = 822
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 47/158 (29%), Gaps = 14/158 (8%)
Query: 17 GEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G+++V+ G+G IK + + +V D M + + L
Sbjct: 144 GDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNE 203
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
R L + + + + +AI ++V DL +
Sbjct: 204 TKRPRTLSRLSDTSV-------------WERRKTKGKVAIQKMVVDLMELYLHRLRQKRY 250
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + +A +E +L+ +
Sbjct: 251 PYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERE 288
>gi|13877639|gb|AAK43897.1|AF370520_1 putative helicase [Arabidopsis thaliana]
Length = 823
Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 47/158 (29%), Gaps = 14/158 (8%)
Query: 17 GEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G+++V+ G+G IK + + +V D M + + L
Sbjct: 145 GDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNE 204
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
R L + + + + +AI ++V DL +
Sbjct: 205 TKRPRTLSRLSDTSV-------------WERRKTKGKVAIQKMVVDLMGLYLHRLRQKRY 251
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + +A +E +L+ +
Sbjct: 252 PYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERE 289
>gi|25084218|gb|AAN72199.1| putative helicase [Arabidopsis thaliana]
Length = 822
Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 47/158 (29%), Gaps = 14/158 (8%)
Query: 17 GEHIVYPAHGVGTITEIK-EQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G+++V+ G+G IK + + +V D M + + L
Sbjct: 144 GDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNE 203
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
R L + + + + +AI ++V DL +
Sbjct: 204 TKRPRTLSRLSDTSV-------------WERRKTKGKVAIQKMVVDLMGLYLHRLRQKRY 250
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + +A +E +L+ +
Sbjct: 251 PYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERE 288
>gi|225451661|ref|XP_002276313.1| PREDICTED: similar to DEAD/DEAH box helicase, putative [Vitis
vinifera]
Length = 823
Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 18/169 (10%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEV---AGMKLEFFVIAFDKDKMCLKVPVGKA 64
R+G+++V+ G+G I + +V + +E+ I + L PV +A
Sbjct: 136 KVDPYTLRSGDYVVHKKVGIGRFVGI-KLDVPKDSSNPIEYVFIEYADGMAKL--PVKQA 192
Query: 65 IDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR 124
+ R + +++ RT+ + +AI ++V DL
Sbjct: 193 SRMLYRY------------NLPSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLME 240
Query: 125 TDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
K + + + + + +A +E +L+ +
Sbjct: 241 LYLHRLKQKRPPYPKSPGMAEFEAQFSYEPTPDQKQAFIDVEEDLTERE 289
>gi|148252654|ref|YP_001237239.1| putative transcription repair coupling factor [Bradyrhizobium sp.
BTAi1]
gi|146404827|gb|ABQ33333.1| putative transcription repair coupling factor [Bradyrhizobium sp.
BTAi1]
Length = 1159
Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 24/169 (14%)
Query: 13 GFRTGEH------IVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
GF G+ +V+ G+ + ++ + V + VP+ +
Sbjct: 506 GFEAGDLPELGSVVVHLQRGLARLGGLRSMGSGDLSAREMVRLVFAGNDAVLVPLAELAL 565
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
I + + + W R + I V ++L +
Sbjct: 566 IWPYAAELGNT---------SLDKADGSSWRPR--------RAAAETEIHVVAKELAKQM 608
Query: 127 SQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Q + + + + +A + V + + +AI + +L+S
Sbjct: 609 RQRRRRPAPKLVPRPAAYEKFVARFPYFTTPDQAKAIRDVLDDLASGHP 657
>gi|257466621|ref|ZP_05630932.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917776|ref|ZP_07914016.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691651|gb|EFS28486.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
ATCC 25563]
Length = 983
Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 20/162 (12%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + + GE+I++ +GVG ++ + ++ D+ L VP+ I
Sbjct: 334 SSPEQIQEGEYIIHENYGVGLYLGMEIIDGKD-----YLRIQYADEDKLFVPLEGIQKIE 388
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
V G + +R + K+ L E++ + S
Sbjct: 389 KYV------------HVPGIIPEIYHLGTRGFSKKREKLQEDILKFAKEILEIQAKRKSI 436
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
YS +++ + ++ +AI ++ ++
Sbjct: 437 GGFQYSPDTVWQ---EEFESSFPYTETSAQKKAIQDVKQDME 475
>gi|259047960|ref|ZP_05738361.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
49175]
gi|259035380|gb|EEW36635.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
49175]
Length = 1180
Score = 61.7 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/145 (9%), Positives = 43/145 (29%), Gaps = 16/145 (11%)
Query: 30 ITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKA 89
++ E+ G+ ++ +D L VPV + + S K
Sbjct: 514 YQGMETLEIGGIHQDYM-SIHYQDGGNLFVPVSQIKLVQKYVSS------------DAKV 560
Query: 90 RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVRE 149
+ + K+ + E++ + D++ ++S + +
Sbjct: 561 PKLNKLGGTEWAKTKRKVAAKIEDIADELIELYAKRDAEKGYAFSRDTV---EQQEFEQA 617
Query: 150 IAAVNSISEPEAINLIEVNLSSKSS 174
+ + ++ I+ ++
Sbjct: 618 FPYTETQDQLRSVAEIKEDMQKDKP 642
>gi|329577443|gb|EGG58892.1| conserved domain protein [Enterococcus faecalis TX1467]
Length = 542
Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF 46
+TG+++V+ HG+G ++ EV G+ ++
Sbjct: 506 SDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM 540
>gi|257452998|ref|ZP_05618297.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
gi|317059538|ref|ZP_07924023.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
gi|313685214|gb|EFS22049.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
Length = 983
Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 20/162 (12%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ + + GE+I++ +GVG ++ + ++ D+ L VP+ I
Sbjct: 334 SSPEQIQEGEYIIHENYGVGLYLGMEIIDGKD-----YLRIQYADEDKLFVPLEGIQKIE 388
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
V G + +R + K+ L E++ + S
Sbjct: 389 KYV------------HVPGIIPEIYHLGTRGFSKKREKLQEDILKFAKEILEIQAKRKSI 436
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLS 170
YS +++ + ++ +AI ++ ++
Sbjct: 437 GGFQYSPDTVWQ---EEFESSFPYTETSAQKKAIQDVKQDME 475
>gi|260584473|ref|ZP_05852220.1| transcription-repair coupling factor [Granulicatella elegans ATCC
700633]
gi|260157991|gb|EEW93060.1| transcription-repair coupling factor [Granulicatella elegans ATCC
700633]
Length = 1174
Score = 61.3 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 20/176 (11%)
Query: 3 FQQKRDAMR----QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58
Q+ +A R G+++V+ HGVG ++ E+ G+ ++ +D L
Sbjct: 481 TQKISNAERLKSYTELAVGDYVVHVNHGVGVYQGMETLEINGVHQDYM-SIHYQDGGHLF 539
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
VPV + + S K + S + K+ + E+
Sbjct: 540 VPVHQIKLVQKYVSS------------DAKVPKLNKLGSSEWAKTKRKVETKIEDIADEL 587
Query: 119 VRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + D++ ++S+ + + + +I I+ ++
Sbjct: 588 IELYAKRDAEKGYAFSKDTV---EQKEFEDAFPYSETQDQLRSIEEIKADMQKDKP 640
>gi|242068687|ref|XP_002449620.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
gi|241935463|gb|EES08608.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
Length = 834
Score = 61.0 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 18/165 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ GE++V+ GVG I A +++ I + L V
Sbjct: 154 VDPRELEPGEYVVHKKVGVGKFACIS----AEDGVDYVFIQYADGMAKLAV--------- 200
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + + R + K +A+ ++V +L Q
Sbjct: 201 -----DQAARMLYRYNLPHEKTRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQ 255
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++++ E + + +A +E +L+ +
Sbjct: 256 RMRLGRPPYPKPASMDDFAAEFPYEPTPDQCQAFIDVEKDLTERE 300
>gi|312880022|ref|ZP_07739822.1| transcription-repair coupling factor [Aminomonas paucivorans DSM
12260]
gi|310783313|gb|EFQ23711.1| transcription-repair coupling factor [Aminomonas paucivorans DSM
12260]
Length = 1041
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 46/163 (28%), Gaps = 16/163 (9%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G +++ +GVG + + G E+F++ F + K L +P + +
Sbjct: 389 EDLTPGVLVLHEDYGVGRFLGTERMPLHGGIQEYFILEFAESK-RLLLPSYQESKLTRYD 447
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
G+ ++ + + A +++ R +
Sbjct: 448 GVG------------GEDVSLDSLRRGHWKRVLEEAKKRAAEAAQKLLEAQARREISEGF 495
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ ++ + + A I ++
Sbjct: 496 PFP---PLREETALLLDTFPYRETEDQIRAWEEIREDMERPVP 535
>gi|315932222|gb|EFV11165.1| carD-like/TRCF domain protein [Campylobacter jejuni subsp. jejuni
327]
Length = 90
Score = 59.8 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
+ G++IV+ +GVG ++ ++G K EF V ++ L +PV I
Sbjct: 4 DELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEF-VAIEYQNSDKLLLPVENLYLIDKYL 62
Query: 72 LSE 74
Sbjct: 63 GVS 65
>gi|213026773|ref|ZP_03341220.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 503
Score = 59.8 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 16/143 (11%)
Query: 32 EIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARV 91
+ E G+K E+ + + L VPV I L + G A
Sbjct: 2 GMTTLEAGGIKGEYL-MLTYANDAKLYVPVSSLHLISRYAGGAEESAP--LHKLGGDA-- 56
Query: 92 KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIA 151
K AE++ + ++ ++ +
Sbjct: 57 --------WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR---EQYQLFCDSFP 105
Query: 152 AVNSISEPEAINLIEVNLSSKSS 174
+ + +AIN + ++ +
Sbjct: 106 FETTPDQAQAINAVLSDMCQPLA 128
>gi|108864446|gb|ABA94062.2| CarD-like transcriptional regulator family protein, expressed
[Oryza sativa Japonica Group]
Length = 832
Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 18/165 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ GE++V+ GVG I A L++ I + L V
Sbjct: 152 VDPRELEAGEYVVHKKVGVGKFVCIS----AEDGLDYVFIQYADAMAKLAV--------- 198
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + + + R + K +A+ ++V +L Q
Sbjct: 199 -----DQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQ 253
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +++ E + + +A ++ +L+ +
Sbjct: 254 RMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERE 298
>gi|229815552|ref|ZP_04445879.1| hypothetical protein COLINT_02602 [Collinsella intestinalis DSM
13280]
gi|229808782|gb|EEP44557.1| hypothetical protein COLINT_02602 [Collinsella intestinalis DSM
13280]
Length = 169
Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 47/169 (27%), Gaps = 12/169 (7%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+H+++P GV T+T E + + L P A + +
Sbjct: 1 MFEIGQHVIHPGQGVCTVTGFT--EDVAHPMILLRAKSGHAETHLMYP--LAQQSRLHAI 56
Query: 73 SEAHFVERALKLVRG--KARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ-- 128
E + + + ++ G + V + + ++
Sbjct: 57 ISREDAEDLIDSYADLTVDSFTERNSALEETHFKQQLKLGAPETVR-VAKTVRHRIAEAE 115
Query: 129 ---PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ S ++ + A R + E + E + +
Sbjct: 116 AHGKKPSSYYSRMLKEARRRTLEEFSVALGADEDAVEERFKAAIIQAGE 164
>gi|125577373|gb|EAZ18595.1| hypothetical protein OsJ_34121 [Oryza sativa Japonica Group]
Length = 832
Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 18/165 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ GE++V+ GVG I A L++ I + L V
Sbjct: 152 VDPRELEAGEYVVHKKVGVGKFVCIS----AEDGLDYVFIQYADAMAKLAV--------- 198
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + + + R + K +A+ ++V +L Q
Sbjct: 199 -----DQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQ 253
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +++ E + + +A ++ +L+ +
Sbjct: 254 RMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERE 298
>gi|188580552|ref|YP_001923997.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
BJ001]
gi|179344050|gb|ACB79462.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
BJ001]
Length = 1085
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ + HG+ ++ E + D+ L VPV +A I
Sbjct: 425 ELRVGDVAIDRDHGLCVFEGLEAIRAGEEDEEDALRLRFADEAILMVPVSQADRIWRY-- 482
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G W+RR E +A + L + +
Sbjct: 483 -GSEAEAVTLDRLDGG------TWARRRLEAEATLAKAARAM-------LKAAQERRKAH 528
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + R + + A+ +L+ ++
Sbjct: 529 APQIVPPEREMERFAAGFGFPLTGDQAGAVEETLDDLAREAP 570
>gi|108864447|gb|ABA94063.2| CarD-like transcriptional regulator family protein, expressed
[Oryza sativa Japonica Group]
Length = 803
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 18/165 (10%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
+ GE++V+ GVG I A L++ I + L V
Sbjct: 152 VDPRELEAGEYVVHKKVGVGKFVCIS----AEDGLDYVFIQYADAMAKLAV--------- 198
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
+ + + + R + K +A+ ++V +L Q
Sbjct: 199 -----DQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQ 253
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ +++ E + + +A ++ +L+ +
Sbjct: 254 RMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERE 298
>gi|255071025|ref|XP_002507594.1| predicted protein [Micromonas sp. RCC299]
gi|226522869|gb|ACO68852.1| predicted protein [Micromonas sp. RCC299]
Length = 570
Score = 58.6 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/167 (10%), Positives = 42/167 (25%), Gaps = 13/167 (7%)
Query: 14 FR--TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV------PVGKAI 65
F+ GE +++ G+G ++ + + + +V
Sbjct: 4 FKLIPGELVIHRKFGIGRFLGVRSIAMDDCSGKECHSTKECHSASTRVGYLFIEYADATA 63
Query: 66 DIGM---RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL 122
I R +K ++ R +R ++ + + +
Sbjct: 64 KIRPEKARFQLYRFASPGTIKSGVKIPKLSRIKDRKRWEQRENIARKHIRHLVMGQMSIY 123
Query: 123 HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
+ K Y E R + + A+ +L
Sbjct: 124 LQRLQSVRKPYCPPS--EDIYQRFNELFPHDLTPDQALAVQDCYEDL 168
>gi|224128810|ref|XP_002320427.1| predicted protein [Populus trichocarpa]
gi|222861200|gb|EEE98742.1| predicted protein [Populus trichocarpa]
Length = 817
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 16/168 (9%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKL--EFFVIAFDKDKMCLKVPVGKAI 65
R+G+++V+ G+G IK G E+ I + L PV +A
Sbjct: 130 KVDPYTLRSGDYVVHKKVGIGRFFGIKFDVPKGSSEAIEYVFIEYADGMAKL--PVMQAS 187
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ R + + + RT+ + + +AI ++V DL
Sbjct: 188 RMLYRY------------NLPNETKRPRTLSKLSDTGAWERRKTKGKVAIQKMVVDLMEL 235
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
K + + + + A +E +L+ +
Sbjct: 236 YLHRLKQRRPPYPKTPFMAEFAAQFPYEPTPDQKLAFIDVERDLNQRE 283
>gi|312876096|ref|ZP_07736084.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|311797082|gb|EFR13423.1| DEAD/DEAH box helicase domain protein [Caldicellulosiruptor
lactoaceticus 6A]
Length = 643
Score = 58.3 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 16/144 (11%)
Query: 31 TEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKAR 90
++ V G E +V + L VP I +
Sbjct: 1 MGFEKITVEGTTKE-YVKLEYANSSYLYVPTTNLDVIEKYIGT------------DDVQP 47
Query: 91 VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREI 150
+ S+ Q+ K+ I ++V + +S+ L++ +
Sbjct: 48 KLSKLGSQEWQKQKQKVRKSLEIVAKDLVELYAKRQLHKGFKFSKDTLWQ---KEFEEKF 104
Query: 151 AAVNSISEPEAINLIEVNLSSKSS 174
+ + +AI I+ ++ S+
Sbjct: 105 PYTETEGQLQAIEEIKRDMESEKP 128
>gi|302757661|ref|XP_002962254.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
gi|300170913|gb|EFJ37514.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
Length = 704
Score = 57.9 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 61/170 (35%), Gaps = 7/170 (4%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEI-KEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + +GE+IV+ G+G + +E G + +V K+P +A
Sbjct: 4 NVDPEKLISGEYIVHKKVGIGQFVSLKEEVPEGGKSPQKYVYLRY-ADGMAKLPAKQARR 62
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINS-GDLIAIAEVVR--DLH 123
+ R + F + + + K + G L A VV+ D++
Sbjct: 63 LLYRYFRHSSFFFVFFSSPGESVKRYPALSKLNDRSQWEKRRTEGSLDAQRRVVKMIDVY 122
Query: 124 RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ ++ + + A+++ + + + +A +E +L+
Sbjct: 123 IRRLKQKRPVYSKDVP--AMSKFAGKFPYTPTPDQIKAFLDVERDLTDAE 170
>gi|218512758|ref|ZP_03509598.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
8C-3]
Length = 277
Score = 57.9 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 9 AMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIG 68
A G G +V+ HG+G +K E AG + + + L +PV +
Sbjct: 207 AEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYAD-EAKLFLPVENIDLLS 265
Query: 69 MR 70
Sbjct: 266 RY 267
>gi|168021077|ref|XP_001763068.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685551|gb|EDQ71945.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 792
Score = 57.5 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 49/169 (28%), Gaps = 17/169 (10%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAG--MKLEFFVIAFDKDKMCLKVPVGKAI 65
GE++V+ GVG IK + AG ++ + + L+ +
Sbjct: 104 AVDPDTLSPGEYVVHKRVGVGCFIGIKYEVPAGKTKPAKYIYLKYADGVAKLRAK-QASR 162
Query: 66 DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ L + K S +AI ++V ++
Sbjct: 163 LLYRYFSPGDVGRAPVLSKLNDPG-------------NWEKRVSKGKLAIQKLVVNMMEL 209
Query: 126 DSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
K ++ + + + +AI +E +++ +
Sbjct: 210 YIHRLKQTRPVYPKNSKLMDSFAAKFPYKETSDQVQAIADVERDMTERE 258
>gi|167894790|ref|ZP_02482192.1| transcription-repair coupling factor [Burkholderia pseudomallei
7894]
Length = 545
Score = 57.5 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFV 47
+ G+ +V+ HG+G + ++ EF
Sbjct: 508 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLH 545
>gi|210632828|ref|ZP_03297561.1| hypothetical protein COLSTE_01465 [Collinsella stercoris DSM 13279]
gi|210159387|gb|EEA90358.1| hypothetical protein COLSTE_01465 [Collinsella stercoris DSM 13279]
Length = 167
Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 42/159 (26%), Gaps = 8/159 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+H+++P GV T+T E + + A + D +
Sbjct: 1 MFHVGQHVIHPGQGVCTVTGFTE---DAVHPMILLSAKSGHTETHLMYPLAQQDRLHAVI 57
Query: 73 SEAHFVERALKLVR-GKARVKRTMWSRRAQEYDAKINSGDLIAIA----EVVRDLHRTDS 127
S + S + ++ G + R
Sbjct: 58 SREDAEDLLGGYADLDVDTFTERNSSLEETHFKQQLKLGAPETVRVAKTMRARISEAEAH 117
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIE 166
+ S ++ + A R V E A + E E
Sbjct: 118 GKKPSSYYTRVLKEARRRSVEEFAVALHVDEDAVEERFE 156
>gi|149922002|ref|ZP_01910444.1| Transcription-repair coupling factor [Plesiocystis pacifica SIR-1]
gi|149817167|gb|EDM76647.1| Transcription-repair coupling factor [Plesiocystis pacifica SIR-1]
Length = 1243
Score = 57.1 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 16/146 (10%)
Query: 29 TITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGK 88
+ + G+ +F ++ + K L +PV + +I R +S +
Sbjct: 564 RYVGLTKLAAQGVPGDFVIVEYAKKD-KLYLPVHRIGEI-ERYVSAEAKAPKL------- 614
Query: 89 ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVR 148
M + Q KI S E+++ + ++ +++ +
Sbjct: 615 ----DRMGGQTFQAKAKKIRSDVRQLAEELLQIYAQREAMTGHAFAPGGDM---YAEFEQ 667
Query: 149 EIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +AI+ ++ +LSS+
Sbjct: 668 TFPFEETPDQADAIDSVQDDLSSQRP 693
>gi|86450984|gb|ABC96759.1| transcriptional regulator CarD family [Rhizobium leguminosarum bv.
trifolii TA1]
Length = 86
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/85 (60%), Positives = 65/85 (76%)
Query: 104 DAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN 163
DAKINSGDLI+IAEVVRDL+R ++QPE+SYSERQLYE+AL+RM REIAAVN +SE EA+
Sbjct: 1 DAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVR 60
Query: 164 LIEVNLSSKSSKTEKSTSENQDKAA 188
L E NL+ + + ++ A
Sbjct: 61 LDETNLNKGPKRGKAIEEDDSQDEA 85
>gi|206895775|ref|YP_002247109.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
mfd), putative [Coprothermobacter proteolyticus DSM
5265]
gi|206738392|gb|ACI17470.1| transcription-repair-coupling factor (trcf) (ATP-dependent helicase
mfd), putative [Coprothermobacter proteolyticus DSM
5265]
Length = 849
Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 43/166 (25%), Gaps = 25/166 (15%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRK 71
G + GE +++ GVG I+ E + + KD L + +
Sbjct: 239 HGLKVGEPVLHVDRGVGVYDGIEYVE-----GKPYFSISYKDGHVLVPLERSQKLVRVPS 293
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ A + +A +R + R E K
Sbjct: 294 TMSIDSLGPARWSRKSRALQQRALKMRSFLENRFKQK--------------------KST 333
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTE 177
+ E + + + + +A + L+ +
Sbjct: 334 QSFTIEPDEEIESAFAQSFQFEETSDQKQATEELHAWLAIPHPEEA 379
>gi|330947447|gb|EGH48076.1| transcription-repair coupling factor [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 135
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 35/147 (23%), Gaps = 18/147 (12%)
Query: 29 TITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGK 88
E+ EV EF + + L VPV I S+
Sbjct: 1 RYLEVATLEVENQAAEFL-MLAYAEDAKLYVPVANLHLIARYTGSDDETA---------- 49
Query: 89 ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMV 147
R + E K + +V +L ++ A
Sbjct: 50 ------PLHRLSSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFS 103
Query: 148 REIAAVNSISEPEAINLIEVNLSSKSS 174
+ + I+ + ++ +
Sbjct: 104 AGFPFEETPDQQTTIDAVRADMLAPKP 130
>gi|302763495|ref|XP_002965169.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
gi|300167402|gb|EFJ34007.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
Length = 693
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 12/167 (7%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEI-KEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + +GE+IV+ G+G + +E G + +V K+P +A
Sbjct: 4 NVDPEKLISGEYIVHKKVGIGQFVSLKEEVPEGGKSPQKYVYLRY-ADGMAKLPAKQARR 62
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ R V+R L + R+ W +R E + I +R L +
Sbjct: 63 LLYRYFRPGESVKRYPALSK---LNDRSQWEKRRTEGSLDAQRRVVKMIDVYIRRLKQKR 119
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
K A+++ + + + +A +E +L+
Sbjct: 120 PVYSKDVP-------AMSKFAGKFPYTPTPDQIKAFLDVERDLTDAE 159
>gi|240137759|ref|YP_002962231.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
AM1]
gi|240007728|gb|ACS38954.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
AM1]
Length = 1080
Score = 55.9 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ + HG+ ++ + E + D L VPV +A I
Sbjct: 420 ELRVGDVAIDRDHGLCLFEGLEAIRASEEDEEDALRLRFADDAILMVPVSQADRIWRY-- 477
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G W+RR E +A + L + E
Sbjct: 478 -GSEAEAVTLDRLDGG------TWARRRLEAEATLAKAARAM-------LKAAQERREAH 523
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + R + + A+ +L+ +
Sbjct: 524 APQIVPPEREMERFAAGFGYPLTGDQAGAVEETLADLAREMP 565
>gi|83952971|ref|ZP_00961698.1| transcriptional regulator, CarD family protein [Roseovarius
nubinhibens ISM]
gi|83835633|gb|EAP74935.1| transcriptional regulator, CarD family protein [Roseovarius
nubinhibens ISM]
Length = 41
Score = 55.2 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 5/46 (10%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFF 46
M+ +K FR +++VYPAHGVG I I+EQE+AG++LE F
Sbjct: 1 MSKSKK-----SEFRPNDYVVYPAHGVGQIVSIEEQEIAGIELELF 41
>gi|319937741|ref|ZP_08012144.1| hypothetical protein HMPREF9488_02980 [Coprobacillus sp. 29_1]
gi|319807176|gb|EFW03790.1| hypothetical protein HMPREF9488_02980 [Coprobacillus sp. 29_1]
Length = 148
Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 13/160 (8%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
+ ++IVY G+ + E++ +V + ++ +RK+
Sbjct: 1 MYDQNDYIVYQD-GIARVIEVENNQV--IIEDYISQE----------IKNINHHHIIRKI 47
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
++ L+ + V + Y + D + +V++ ++ + +
Sbjct: 48 CSLETIKDILERIEFIRTVYAPQKKVLEELYQEAMMKYDELEWVKVIKSVYVREKMKKAY 107
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
ER A + + EI+ + I E E I ++
Sbjct: 108 SFERAYRIQAEHFLNSEISILLQIPEEEVNQYIINSIHEN 147
>gi|293374796|ref|ZP_06621101.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|292646592|gb|EFF64597.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
Length = 120
Score = 54.8 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 42/118 (35%), Gaps = 6/118 (5%)
Query: 55 MCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA 114
M +K+PV I +R + V+ ++ + + R + + + +
Sbjct: 1 MTIKIPVLNTIK-NIRPIHSTDEVKELIQKIPDLELLWIFDERERNNLFRQMLRNANCDE 59
Query: 115 IAEVVRDLH-----RTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEV 167
V++ ++ + ++ ++++ A + E V +I+ + I
Sbjct: 60 WIIVIKTIYSYKYLDNYKGKRLNKNDDEIFKIAEKLLNEEFGFVLNINPDDVPTYIGE 117
>gi|139439093|ref|ZP_01772545.1| Hypothetical protein COLAER_01552 [Collinsella aerofaciens ATCC
25986]
gi|133775440|gb|EBA39260.1| Hypothetical protein COLAER_01552 [Collinsella aerofaciens ATCC
25986]
Length = 161
Score = 54.8 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 47/150 (31%), Gaps = 8/150 (5%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
F G+H+++P GV T+ ++ + + L PV +A +
Sbjct: 1 MFSIGQHVIHPGQGVCTVVGF--RDDTPQPMLLLETKQGHAQTILMYPVAQADRLHAAIS 58
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRT-----DS 127
+ + S + ++ G + V + + ++
Sbjct: 59 QQDAEHLLSHYDELECDTFTERNSSLEETHFKQQLKLGAPETVR-VAKTMMHRIRQAEEA 117
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSIS 157
+ S ++ + A R + E A ++
Sbjct: 118 DKKPSSYYMRVLKEAKRRSIEEFAVALGVT 147
>gi|170738843|ref|YP_001767498.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
sp. 4-46]
gi|168193117|gb|ACA15064.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
Length = 1098
Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 13/159 (8%)
Query: 17 GEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAH 76
G+ +++ HG+ ++ D P+ +A I +
Sbjct: 440 GDVVIHEDHGLCVFEGLELLRGPEGGGGEAARLRFADDAVRLAPLSEAGRIWRYGAAAEA 499
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD-LHRTDSQPEKSYSE 135
L + W+ R +G A+AE R L +++ +
Sbjct: 500 VTLDRL----DGGNLPGGTWATR--------RAGVEAAVAESARRMLALAEARRRATAPA 547
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
E + R + + AI+ + +L++
Sbjct: 548 LVPPERQMERFGAGFGFPPTPDQAAAIDAVMADLAAGRP 586
>gi|170750777|ref|YP_001757037.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170657299|gb|ACB26354.1| DEAD/DEAH box helicase domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 1109
Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 30/175 (17%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQ-------------EVAGMKLEFFVIAFDKDKMCLKV 59
R G+ V HG+ ++ G E + F L V
Sbjct: 437 DLRPGDVAVDRDHGLCVFEGLEPVSAPSAAPSAAPGATQDGAPSEALRLRFAG-DAILMV 495
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
PV +A I + L + G W RR E +A + + + E
Sbjct: 496 PVTQADRIWRY---GSEPDAVTLDKLDGG------TWPRRRLEAEATMARTARLML-EAA 545
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R T++ + S + R + + A++ + +L+S
Sbjct: 546 RARRETEAPVLAPPA------SEMERFAAGFGFAPTPDQAAAVDALMADLASGRP 594
>gi|254560353|ref|YP_003067448.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
extorquens DM4]
gi|254267631|emb|CAX23477.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
DM4]
Length = 1111
Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ + HG+ ++ E + D L VPV +A I
Sbjct: 451 ELRVGDVSIDRDHGLCLFEGLEAIRGGEEDEEDALRLRFADDAILMVPVSQADRIWRY-- 508
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G W+RR E +A + L + E
Sbjct: 509 -GSEAEAVTLDRLDGG------TWARRRLEAEATLAKAARAM-------LKAAQERREAH 554
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + R + + A+ +L+ +
Sbjct: 555 APQIVPPEREMERFAAGFGYPLTGDQAGAVEETLADLAREMP 596
>gi|218529447|ref|YP_002420263.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
gi|218521750|gb|ACK82335.1| DEAD/DEAH box helicase domain protein [Methylobacterium
chloromethanicum CM4]
Length = 1111
Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ + HG+ ++ E + D L VPV +A I
Sbjct: 451 ELRVGDVSIDRDHGLCLFEGLEAIRGGEEDEEDALRLRFADDAILMVPVSQADRIWRY-- 508
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G W+RR E +A + L + E
Sbjct: 509 -GSEAEAVTLDRLDGG------TWARRRLEAEATLAKAARAM-------LKAAQERREAH 554
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + R + + A+ +L+ +
Sbjct: 555 APQIVPPEREMERFAAGFGYPLTGDQAGAVEETLADLAREMP 596
>gi|163850727|ref|YP_001638770.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
extorquens PA1]
gi|163662332|gb|ABY29699.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
PA1]
Length = 1111
Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
R G+ + HG+ ++ E + D L VPV +A I
Sbjct: 451 ELRVGDVSIDRDHGLCLFEGLEAIRGGEEDEEDALRLRFADDAILMVPVSQADRIWRY-- 508
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKS 132
+ L + G W+RR E +A + L + E
Sbjct: 509 -GSEAEAVTLDRLDGG------TWARRRLEAEATLAKAARAM-------LKAAQERREAH 554
Query: 133 YSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ E + R + + A+ +L+ +
Sbjct: 555 APQIVPPEREMERFAAGFGYPLTGDQAGAVEETLADLAREMP 596
>gi|147676451|ref|YP_001210666.1| helicase subunit of the DNA excision repair complex [Pelotomaculum
thermopropionicum SI]
gi|146272548|dbj|BAF58297.1| helicase subunit of the DNA excision repair complex [Pelotomaculum
thermopropionicum SI]
Length = 541
Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE 44
R G+++V+ HG+G + + G E
Sbjct: 501 DLRVGDYVVHANHGIGQYLGVVPLTIGGHSQE 532
>gi|225075726|ref|ZP_03718925.1| hypothetical protein NEIFLAOT_00742 [Neisseria flavescens
NRL30031/H210]
gi|224952997|gb|EEG34206.1| hypothetical protein NEIFLAOT_00742 [Neisseria flavescens
NRL30031/H210]
Length = 653
Score = 53.3 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 16/144 (11%)
Query: 31 TEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKAR 90
+ ++ G E ++ + + L VPV + I S AL + A
Sbjct: 1 MGLVTMDLGGETNEMMLLEYAD-EAQLYVPVSQLHLISRY--SGQAHENVALHKLGSGAW 57
Query: 91 VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREI 150
K + A + +L+ + E +
Sbjct: 58 NKAKR-----------KAAEKARDTAAELLNLYAQRAAQSGHKFEINELD--YQAFADGF 104
Query: 151 AAVNSISEPEAINLIEVNLSSKSS 174
+ + AI + +L+
Sbjct: 105 GYEETEDQAAAIAAVIKDLTQAKP 128
>gi|269118729|ref|YP_003306906.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
gi|268612607|gb|ACZ06975.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
33386]
Length = 984
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 21/172 (12%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
T +Q + R +++++ +GVG I++ ++ D+ L +P+
Sbjct: 336 TKKQIKYKDLNQIREDDYVIHEQYGVGKYKGIEQMNNRD-----YLKIKYADEDILFIPI 390
Query: 62 GKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+ L K + K+ RA E+V+
Sbjct: 391 EHLDRLEKYISYGEEPKVYKLGTKGFKYKKKKLEEEIRA-------------FAEELVKI 437
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
S YS+ +++ V + + AI ++ ++ S
Sbjct: 438 QAIRASNQGFVYSKDTVWQEEFEEEFP---FVETEDQKRAIEDVKNDMESDK 486
>gi|156302986|ref|XP_001617451.1| hypothetical protein NEMVEDRAFT_v1g226070 [Nematostella vectensis]
gi|156193879|gb|EDO25351.1| predicted protein [Nematostella vectensis]
Length = 342
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
R +V+ HGVG + + G + E + ++ L VP
Sbjct: 295 TELRLNAPVVHIDHGVGRYLGLTNLSIDGQETE-LLTIGYANEAKLYVP 342
>gi|328955733|ref|YP_004373066.1| hypothetical protein Corgl_1145 [Coriobacterium glomerans PW2]
gi|328456057|gb|AEB07251.1| hypothetical protein Corgl_1145 [Coriobacterium glomerans PW2]
Length = 170
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 12/172 (6%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKL 72
FR GEH+++P GV TIT E A + + +K P+ ++ +
Sbjct: 1 MFRIGEHVIHPGQGVCTITGFD--EAAPNPMIILESKQGHARTRMKYPLSQSDRLHATVS 58
Query: 73 SEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIA----EVVRDLHRTDSQ 128
E S + + G + +R +
Sbjct: 59 REEAERVMENYDAIECDSFTERNSSLEESHFKQLLKQGVPETLRVAKTMRLRIMEAESRD 118
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAIN------LIEVNLSSKSS 174
+ S ++ + A R V E+A +SE + I+ L S+
Sbjct: 119 KKPSSYYTRVLKEAHRRSVEELAVALGVSESDIERRFAGVADIDEFLDPSSN 170
>gi|156341986|ref|XP_001620841.1| hypothetical protein NEMVEDRAFT_v1g222657 [Nematostella vectensis]
gi|156206219|gb|EDO28741.1| predicted protein [Nematostella vectensis]
Length = 694
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 4 QQKRDAMRQGFR---TGEHIVYPAHGVGTITEIKEQEVAGMK 42
+K+ + G+++ + HG+G +++ +V K
Sbjct: 558 AKKQSITLKELNTLEIGDYVTHIDHGIGKFGGLQKIDVEENK 599
>gi|315928013|gb|EFV07333.1| transcription-repair coupling factor domain protein [Campylobacter
jejuni subsp. jejuni DFVF1099]
Length = 377
Score = 52.1 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFV 47
++K + + G++IV+ +GVG ++ ++G K +
Sbjct: 333 TRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKSLLL 377
>gi|213028438|ref|ZP_03342885.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 32
Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMK 42
G+ +V+ HGVG + E G+K
Sbjct: 2 ELHVGQPVVHLEHGVGRYAGMTTLEAGGIK 31
>gi|309774569|ref|ZP_07669595.1| hypothetical protein HMPREF0983_00033 [Erysipelotrichaceae
bacterium 3_1_53]
gi|308917684|gb|EFP63398.1| hypothetical protein HMPREF0983_00033 [Erysipelotrichaceae
bacterium 3_1_53]
Length = 155
Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 52/151 (34%), Gaps = 8/151 (5%)
Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77
E + +P G+ +T I ++E ++ D +P +G+R L E+
Sbjct: 6 EKVFHPNLGICDVTGIDKKEKR-------MVITAADGSTCSIPFKSLPLVGVRNLMESKE 58
Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA-IAEVVRDLHRTDSQPEKSYSER 136
+ L+ + S + I + + ++ L+ + +K +
Sbjct: 59 ADLILQELFEPQHASSLPASLTLMQIQQSIVDYKMEQQVQLLIGLLYWKYVEGKKGIRYQ 118
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ + E++ V +S + +E
Sbjct: 119 ECLNRIEGVLCEELSFVLDLSMDNLVERLEN 149
>gi|313898413|ref|ZP_07831950.1| hypothetical protein HMPREF9406_1313 [Clostridium sp. HGF2]
gi|312956795|gb|EFR38426.1| hypothetical protein HMPREF9406_1313 [Clostridium sp. HGF2]
Length = 155
Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 55/151 (36%), Gaps = 8/151 (5%)
Query: 18 EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHF 77
E + +P G+ +T I ++E ++ D +P +G+R L E+
Sbjct: 6 EKVFHPNLGICDVTGIDKKEKR-------MVITAADGSTCSIPFESLPRVGVRNLMESDE 58
Query: 78 VERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIA-IAEVVRDLHRTDSQPEKSYSER 136
+ +K + + S + I L + ++ L+ ++ +K +
Sbjct: 59 ADLIMKKLFTPKQESSLPASLTLMQIQQSIVDYKLEQQVQLLIGLLYWKYAEGKKGIRYQ 118
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEV 167
+ + E++ V +S+ + +E
Sbjct: 119 ECLSRIEGVLCEELSFVLDLSKDLLVERLED 149
>gi|261884470|ref|ZP_06008509.1| transcription-repair coupling factor [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 325
Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 39/123 (31%), Gaps = 15/123 (12%)
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
L VPV + I + + E L + G ++ K+++
Sbjct: 13 GADDKLFVPVDQIELIQN--IVGSEEKEPKLHKLGGAD----------WKKTKPKVSNAV 60
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
E+++ + +++ ++ + + + + + +I ++ ++
Sbjct: 61 KDIADELIKLYAKREAEKGFAFDKDDDLQRS---FENAFPYEETEDQLRSIEEVKRDMER 117
Query: 172 KSS 174
Sbjct: 118 SRP 120
>gi|167894791|ref|ZP_02482193.1| transcription-repair coupling factor [Burkholderia pseudomallei
7894]
Length = 649
Score = 47.5 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 18/132 (13%)
Query: 44 EFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEY 103
EF + + L VPV + I ++ L +
Sbjct: 2 EFLHLEYAG-DSKLYVPVAQLHVISRYSGADPDSAP--LHALGSGQ-------------- 44
Query: 104 DAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYE-SALNRMVREIAAVNSISEPEAI 162
+ I + +L ++ + + + + AI
Sbjct: 45 WERAKRRAAQQIRDTAAELLNLYARRAAREGHAFGLDPRDYVKFADSFGFEETPDQAAAI 104
Query: 163 NLIEVNLSSKSS 174
+ +++S
Sbjct: 105 AAVIGDMTSGKP 116
>gi|257784821|ref|YP_003180038.1| hypothetical protein Apar_1018 [Atopobium parvulum DSM 20469]
gi|257473328|gb|ACV51447.1| hypothetical protein Apar_1018 [Atopobium parvulum DSM 20469]
Length = 166
Score = 47.5 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 12/155 (7%)
Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
GE V+P GV + +V ++++ K +++ + +R L
Sbjct: 4 VGEFCVHPGQGVCLVK-----DVVSEPTPAYILSPIGQKHPVQIVFPLDQEFRLRNLMTR 58
Query: 76 HFVERALKLVRGKA--RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS-----Q 128
+ + S + I G + +
Sbjct: 59 DEATNLVDTYPQIELITFRIHNTSLEESHFRHAIREGSCKDSISIAKTFRARIDTARSLN 118
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAIN 163
+ S ++++ A NR + E+ + + E
Sbjct: 119 KKPPISHERIFKIASNRSLYELITALNCTVDEIQK 153
>gi|304439763|ref|ZP_07399661.1| DNA helicase RecG [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371750|gb|EFM25358.1| DNA helicase RecG [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 670
Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 51/144 (35%), Gaps = 2/144 (1%)
Query: 29 TITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGK 88
+K ++V G + + + D + L + + K + KL
Sbjct: 127 KFENVKRKKVLGSIIPVYQQSKDINNKELIKLTDQVLKEYAWKNVLPQEILEKYKLYDMD 186
Query: 89 ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVR 148
++ + + Y NS I ++ L + + ++ ++ +L E + +
Sbjct: 187 KTMRELHRPKSQKTYGNARNSYSFYEI--LIYLLALSTIKKDREETDIKLIEFEIEEFLN 244
Query: 149 EIAAVNSISEPEAINLIEVNLSSK 172
+ + S+ + I ++ +L S
Sbjct: 245 TLPFTLTDSQMKVIEEVKGDLKSG 268
>gi|229100846|ref|ZP_04231656.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
gi|228682572|gb|EEL36639.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
Length = 621
Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 8/72 (11%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 104 DAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPEAI 162
K+ + ++ ++ DL + ++ E S ++A + + +I
Sbjct: 18 WKKVKTKVEKSVQDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETDDQLRSI 77
Query: 163 NLIEVNLSSKSS 174
I+ ++
Sbjct: 78 EEIKKDMERGRP 89
>gi|95007372|emb|CAJ20592.1| DNA helicase, putative [Toxoplasma gondii RH]
Length = 888
Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RK ++ L+ + ++ +RR Y + ++ + L + +
Sbjct: 364 RKKRGIERLDTTLRALHHPQTLEDVRKARRDLFYSTML-------WLQLAKKLRTREVES 416
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
+ + E L + + S+ +AI I ++ S
Sbjct: 417 QFRGYASRTGEEILQAFYASLNFSLTPSQLQAIEEIRADMESPRPMR 463
>gi|219128770|ref|XP_002184578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404028|gb|EEC43977.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 942
Score = 45.2 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 35/189 (18%)
Query: 16 TGEHIVYPAHGVGTIT--------EIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
G+ +V+ +G+G ++ E+E + I + + +V + +I
Sbjct: 99 PGDFVVHRKYGIGRFETTCLRPKTKLNEEERLAQEERRAEILTTELRKRKRVTPDEIQEI 158
Query: 68 GMRKLSEAHFVERA-------------------------LKLVRGKARVKRTMWSRRAQE 102
R +E + L R V + SR E
Sbjct: 159 RARFGTEEDTDPLSNPQTTVLEITYADAVVHVPVDRAYRLSRYRAGDAVVKPKLSRVKGE 218
Query: 103 YDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY--ESALNRMVREIAAVNSISEPE 160
+K ++ +D+ + E + E + + + + +
Sbjct: 219 AWSKAKQKVEENTLQLAQDVLALYATRETLQRQPFDPSVEDVVQEFSKSFLYEPTTDQKK 278
Query: 161 AINLIEVNL 169
IE ++
Sbjct: 279 CFEEIENDM 287
>gi|330948797|gb|EGH49057.1| transcription-repair coupling factor [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 62
Score = 45.2 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEV 38
R G +V+ HGVG + EV
Sbjct: 36 TELREGAPVVHIDHGVGRYLGLATLEV 62
>gi|146339310|ref|YP_001204358.1| putative transcription repair coupling factor [Bradyrhizobium sp.
ORS278]
gi|146192116|emb|CAL76121.1| putative transcription repair coupling factor [Bradyrhizobium sp.
ORS278]
Length = 1091
Score = 45.2 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/159 (10%), Positives = 41/159 (25%), Gaps = 16/159 (10%)
Query: 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEA 75
G I++ G+ + ++ + + + + VP+ I +
Sbjct: 422 PGSAIIHLQRGLALLDGLELISAPNVSARDMIRLVFANDEAILVPIADLGLIWPYAGDPS 481
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
W+ R + + D I VR + ++
Sbjct: 482 GV---------KLDDADGRSWAAR------CLRAEDEID-RTAVRLSDQIRARRRAEAPR 525
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
R V + + + AI + +L +
Sbjct: 526 IVAPAVEYERFVARFPYLVTPDQAAAIEDVLKDLGAGHP 564
>gi|3023082|gb|AAC12642.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002]
Length = 162
Score = 43.6 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 10/99 (10%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 76 HFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
+ R +G+ + R ++ AK+ ++++ + +Y
Sbjct: 7 DTLSRYRHTAKGRPELHRMGGKT-WEKTKAKVRKSVKKLAVDLLKIYAQRAEMKGITYPS 65
Query: 136 RQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + +A+ I+ +L S
Sbjct: 66 DAPWQQEME---DSFPYQATPDQLKAVQDIKRDLESDRP 101
>gi|221482870|gb|EEE21201.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii GT1]
Length = 1042
Score = 43.6 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RK ++ L+ + ++ +RR Y + ++ + L + +
Sbjct: 96 RKKRGIERLDTTLRALHHPQTLEDVRKARRDLFYSTML-------WLQLAKKLRTREVES 148
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
+ + E L + + S+ +AI I ++ S
Sbjct: 149 QFRGYASRTGEEILQAFYASLNFSLTPSQLQAIEEIRADMESPRPMR 195
>gi|237840713|ref|XP_002369654.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
gi|211967318|gb|EEB02514.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
gi|221503338|gb|EEE29036.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii VEG]
Length = 1042
Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 70 RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQP 129
RK ++ L+ + ++ +RR Y + ++ + L + +
Sbjct: 96 RKKRGIERLDTTLRALHHPQTLEDVRKARRDLFYSTML-------WLQLAKKLRTREVES 148
Query: 130 EKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
+ + E L + + S+ +AI I ++ S
Sbjct: 149 QFRGYASRTGEEILQAFYASLNFSLTPSQLQAIEEIRADMESPRPMR 195
>gi|325114293|emb|CBZ49850.1| putative ATP-dependent DNA helicase [Neospora caninum Liverpool]
Length = 1801
Score = 42.5 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 8/62 (12%), Positives = 21/62 (33%)
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + L + + + + E L + + S+ +AI I ++ S
Sbjct: 897 WLQLAKKLRTREVESQFRGYASRAGEEILRAFYASLEFPLTPSQLQAIEEIRADMESPRP 956
Query: 175 KT 176
Sbjct: 957 MR 958
>gi|289808478|ref|ZP_06539107.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 72
Score = 42.5 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQ 36
G+ +V+ HGVG +
Sbjct: 49 ELHVGQPVVHLEHGVGRYAGMTTL 72
>gi|169350086|ref|ZP_02867024.1| hypothetical protein CLOSPI_00828 [Clostridium spiroforme DSM 1552]
gi|169293299|gb|EDS75432.1| hypothetical protein CLOSPI_00828 [Clostridium spiroforme DSM 1552]
Length = 670
Score = 42.1 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 77 FVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSER 136
E AL L+ + + R +Y+ + + ++ R + ++
Sbjct: 178 HKELALNLIHFPNSNRDIQEAMRYLKYEEFLKFQLTMQYIKLSR--------KKNLGIKK 229
Query: 137 QLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
Q + +N+ + E+ + + +A+N I +L S
Sbjct: 230 QFDQQIINKFINELPFALTTDQKQAVNEILEDLKS 264
>gi|329577423|gb|EGG58873.1| TRCF domain protein [Enterococcus faecalis TX1467]
Length = 637
Score = 42.1 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 7/72 (9%), Positives = 18/72 (25%), Gaps = 1/72 (1%)
Query: 104 DAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNR-MVREIAAVNSISEPEAI 162
K I ++ DL + E + A + + + +
Sbjct: 29 WTKTKRKVASKIEDIADDLILLYATRESEKGYAFPPDDAYQKEFEEAFPYSETDDQLRSA 88
Query: 163 NLIEVNLSSKSS 174
I+ ++
Sbjct: 89 AEIKHDMEKSRP 100
>gi|254383558|ref|ZP_04998908.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194342453|gb|EDX23419.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 97
Score = 42.1 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKE 35
+ + F G+ + + HG+G + I+E
Sbjct: 45 EPPLRQFSVGDRVTHDEHGLGRVVGIEE 72
>gi|255025717|ref|ZP_05297703.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J2-003]
Length = 626
Score = 41.7 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 6/88 (6%), Positives = 28/88 (31%), Gaps = 3/88 (3%)
Query: 87 GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRM 146
GK+ + + K+ + ++++ +++ ++S +
Sbjct: 8 GKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQR---EF 64
Query: 147 VREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +I+ I+ ++
Sbjct: 65 EEAFPYQETEDQLRSISEIKKDMERPRP 92
>gi|329769841|ref|ZP_08261241.1| hypothetical protein HMPREF0433_01005 [Gemella sanguinis M325]
gi|328838017|gb|EGF87639.1| hypothetical protein HMPREF0433_01005 [Gemella sanguinis M325]
Length = 653
Score = 40.5 bits (93), Expect = 0.100, Method: Composition-based stats.
Identities = 8/74 (10%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALN-RMVREIAAVNSISEPE 160
+ ++ + I ++ DL + + E S + ++ + V + + +
Sbjct: 24 KKWQQVKNKVRREIEDISEDLIKLYIKRELSSGYAYSLDGSMQYEFEADFPFVPTDDQLK 83
Query: 161 AINLIEVNLSSKSS 174
A I+ ++ +
Sbjct: 84 ATEEIKRDMEKERP 97
>gi|213583692|ref|ZP_03365518.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 468
Score = 40.2 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 6/75 (8%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Query: 100 AQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEP 159
K AE++ + ++ ++ + + +
Sbjct: 23 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR---EQYQLFCDSFPFETTPDQA 79
Query: 160 EAINLIEVNLSSKSS 174
+AIN + ++ +
Sbjct: 80 QAINAVLSDMCQPLA 94
>gi|32401300|gb|AAP80822.1| transcription-repair coupling factor [Griffithsia japonica]
Length = 174
Score = 39.8 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 9/143 (6%)
Query: 39 AGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSR 98
G ++ +V+ +D + V + I + A V L ++ GK+ + +
Sbjct: 10 DGSLIQEYVVLEYRDGD-VYVSLSHLDLITVLSPGAAEKV-ETLDVITGKSTFTQGTIRK 67
Query: 99 RAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYE---SALNRMVREIAAVNS 155
R Y A++ I + + +LH +Q +R +E A + +
Sbjct: 68 RRARYMARLR--VREKIRKQLVNLHGMYAQRT--SVDRAPFEVDEEAERQFFSACEFSLT 123
Query: 156 ISEPEAINLIEVNLSSKSSKTEK 178
+ EA I ++S + S ++
Sbjct: 124 ADQQEATRHIFHDMSERRSPMDR 146
>gi|297519880|ref|ZP_06938266.1| transcription-repair coupling factor [Escherichia coli OP50]
Length = 612
Score = 39.4 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 6/75 (8%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Query: 100 AQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEP 159
K AE++ + ++ ++ + + +
Sbjct: 14 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR---EQYQLFCDSFPFETTPDQA 70
Query: 160 EAINLIEVNLSSKSS 174
+AIN + ++ +
Sbjct: 71 QAINAVLSDMCQPLA 85
>gi|317123628|ref|YP_004097740.1| hypothetical protein Intca_0465 [Intrasporangium calvum DSM 43043]
gi|315587716|gb|ADU47013.1| hypothetical protein Intca_0465 [Intrasporangium calvum DSM 43043]
Length = 134
Score = 39.4 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEF 45
+ + F G+ + + ++GVG + I + +G ++F
Sbjct: 83 EPEVEDFTVGDRVSHDSYGVGRVVGI---DASGATVDF 117
>gi|307297520|ref|ZP_07577326.1| ATP-dependent DNA helicase RecG [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306916780|gb|EFN47162.1| ATP-dependent DNA helicase RecG [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 785
Score = 39.4 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 23/180 (12%)
Query: 18 EHIV--------YPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGM 69
++I+ Y HG+ T E+ ++E ++ + + M
Sbjct: 200 DYIIQKLRRDREYLIHGLAKETPFGPMEMNSPEIEEIQGEVPREILPVYSLTSGISMKMM 259
Query: 70 RKLSEAHFVE-RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL------ 122
RK+ + + R+L + + R + A L I + L
Sbjct: 260 RKIVKRNLGLVRSLDDLVPSSITTERGLLPRKHAFTAIHFPKSLYEIRKARESLAYEEFF 319
Query: 123 --------HRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + E ++++ R++ + + + A I ++ + S
Sbjct: 320 LFETTILFRKRQIRKEYQGLQKEISGVLSKRLIESLPFELTKDQVTAFEEIRDDMRAASP 379
>gi|85707555|ref|ZP_01038627.1| transcriptional regulator, CarD family protein [Roseovarius sp.
217]
gi|85667927|gb|EAQ22816.1| transcriptional regulator, CarD family protein [Roseovarius sp.
217]
Length = 51
Score = 39.0 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
D Q E+SYSERQLYE+AL R+ RE+AAV+ E A ++ L S+++
Sbjct: 3 DDQREQSYSERQLYEAALERLTREVAAVSGGDEVLAARQVDEVLVSRAA 51
>gi|220931077|ref|YP_002507985.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
gi|219992387|gb|ACL68990.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
Length = 715
Score = 38.6 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 5 QKRDAMRQGFRTGEHIVYPAHGVGTITEIKE 35
+++++ ++ G+ +V+P G G I ++E
Sbjct: 657 KEKESKTGEYKVGDTVVHPRWGKGQIVGVRE 687
>gi|218289816|ref|ZP_03494016.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
gi|218240107|gb|EED07292.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
Length = 705
Score = 38.6 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKE 35
R G+ +V+P HG G + ++
Sbjct: 646 EPDVLRPGDRVVHPQHGQGIVLAVET 671
>gi|297611935|ref|NP_001068018.2| Os11g0533100 [Oryza sativa Japonica Group]
gi|255680143|dbj|BAF28381.2| Os11g0533100 [Oryza sativa Japonica Group]
Length = 823
Score = 38.2 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 8/70 (11%), Positives = 25/70 (35%)
Query: 104 DAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN 163
K +A+ ++V +L Q + +++ E + + +A
Sbjct: 220 WEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFI 279
Query: 164 LIEVNLSSKS 173
++ +L+ +
Sbjct: 280 DVDKDLTERE 289
>gi|87241294|gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial
[Medicago truncatula]
Length = 494
Score = 38.2 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 28/89 (31%)
Query: 85 VRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALN 144
+ + + R + K + +AI ++V DL K +
Sbjct: 34 LPNENKKPRALSKLNDTSAWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPMSPVVA 93
Query: 145 RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + +A +E +L+ +
Sbjct: 94 EFAAKFPYEPTPDQKQAFIDVEKDLTERE 122
>gi|311897072|dbj|BAJ29480.1| hypothetical protein KSE_36770 [Kitasatospora setae KM-6054]
Length = 73
Score = 38.2 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIK 34
F+ K +A R+ F G+ + + A+G+G + ++
Sbjct: 15 PFKAKAEAPRKHFAVGDRVTHDAYGLGRVIGVE 47
>gi|125534627|gb|EAY81175.1| hypothetical protein OsI_36354 [Oryza sativa Indica Group]
Length = 640
Score = 38.2 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 8/70 (11%), Positives = 25/70 (35%)
Query: 104 DAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAIN 163
K +A+ ++V +L Q + +++ E + + +A
Sbjct: 37 WEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFI 96
Query: 164 LIEVNLSSKS 173
++ +L+ +
Sbjct: 97 DVDKDLTERE 106
>gi|283780162|ref|YP_003370917.1| hypothetical protein Psta_2387 [Pirellula staleyi DSM 6068]
gi|283438615|gb|ADB17057.1| hypothetical protein Psta_2387 [Pirellula staleyi DSM 6068]
Length = 622
Score = 38.2 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 19/163 (11%)
Query: 27 VGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVR 86
+G I E++ +KM P + + +
Sbjct: 418 IGRYRGIVN-------FEYWRSRCRAEKM----PRTLTARKLVYDADLLTETGEQFSVAK 466
Query: 87 GKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRM 146
K +WS +E+ + + + + + ++ Q E+ + + + +S L R
Sbjct: 467 EKYEEAWGLWSEIFREFPDLMENAEAQDLIDSIKKYRSLLGQIEQPFPKDFVLKSLLER- 525
Query: 147 VREIAAVNSISEPEAINLIEVNLSSKSS--KTEKSTSENQDKA 187
+ E + L+E + K + K + ++ +++
Sbjct: 526 -----HAEGQTLLEQVKLLEEAANEKPAETKPAEKPADKPEES 563
>gi|42526582|ref|NP_971680.1| putative lipoprotein [Treponema denticola ATCC 35405]
gi|41816775|gb|AAS11561.1| lipoprotein, putative [Treponema denticola ATCC 35405]
Length = 871
Score = 37.8 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 143 LNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKS 179
N + + + E +AI++IE + S E
Sbjct: 168 YNILASKFGITETGDEQKAISMIENAMQKASQLAENK 204
>gi|239931189|ref|ZP_04688142.1| hypothetical protein SghaA1_23414 [Streptomyces ghanaensis ATCC
14672]
gi|291439560|ref|ZP_06578950.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
gi|291342455|gb|EFE69411.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
Length = 73
Score = 37.8 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIK 34
+ + F G+ + + +G+G + I+
Sbjct: 21 EPAPKHFAVGDQVTHDMYGLGRVIGIE 47
>gi|269926936|ref|YP_003323559.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798]
gi|269790596|gb|ACZ42737.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798]
Length = 779
Score = 37.5 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDI 67
Q ++ G+ + +P G G + + E+ G E V L + + I
Sbjct: 727 QEYKPGDRVRHPKFGEGVVL---KVEIQGEDAEVEVRFAAGSTKKLLASMARLQKI 779
>gi|299068122|emb|CBJ39337.1| conserved protein of unknown function [Ralstonia solanacearum
CMR15]
Length = 437
Score = 37.5 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 12/151 (7%)
Query: 27 VGTI-TEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLV 85
+GTI + E++ +V ++ VP + ++ + + +
Sbjct: 229 IGTIAIGLTIIEMSEEVEVRYVNGKY-VRLKEYVPPKRGRNVSDHGWTSKQDLPNGRLCL 287
Query: 86 RGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDL-----HRTDSQPEKSYSERQLYE 140
+ + R WS++ +E + +G + I + L ++ ERQ +E
Sbjct: 288 QAYSPYWRAEWSKQWRETRERDIAGLIPVIVNELERLAPEVARLAAEGERQADLERQHWE 347
Query: 141 SALNRMVRE-----IAAVNSISEPEAINLIE 166
+ + RE A S E + +I+
Sbjct: 348 AQREQWRREEAEKRAAKALKDSMEELLQIID 378
>gi|225548726|ref|ZP_03769773.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 94a]
gi|225370756|gb|EEH00192.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 94a]
Length = 686
Score = 37.5 bits (85), Expect = 0.93, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 27/73 (36%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
E K + +++ R S ++ L + L ++V + + + +
Sbjct: 211 EMLEKAKKTLIYREIFLLQFFSRYRSSKILFREKKDLSKDLLEKVVSSLPFELTEDQKIS 270
Query: 162 INLIEVNLSSKSS 174
I+ I +L+S
Sbjct: 271 IDEIFFDLNSSKP 283
>gi|315180474|gb|ADT87388.1| flagellar M-ring protein [Vibrio furnissii NCTC 11218]
Length = 568
Score = 37.5 bits (85), Expect = 0.97, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 14/150 (9%)
Query: 7 RDAMRQGFRTGEHIVYPAH--GVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
R+ ++ + G +V+ H GV +++ ++ + E + L
Sbjct: 344 RNEAKREYAVGGRVVHVQHQQGV-----LEKLTISVIVNEHNATSEGWSDESLARITNVI 398
Query: 65 IDIGMRKLSEAHFVER-----ALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVV 119
+ + + ++ + Q AK G L+++ +V
Sbjct: 399 QNAVGYDAVRGDQIYVSSFPFVVSAMKEVEPLAWYKDPSVFQA--AKYGFGVLMSVLLIV 456
Query: 120 RDLHRTDSQPEKSYSERQLYESALNRMVRE 149
L K ++ ALN + E
Sbjct: 457 LVLRPLAQFLTKPDNDESSDAKALNELSAE 486
>gi|302533350|ref|ZP_07285692.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302442245|gb|EFL14061.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 93
Score = 37.5 bits (85), Expect = 0.97, Method: Composition-based stats.
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKE 35
+ F G+ + + HG+G + ++E
Sbjct: 46 RRFDVGDRVSHDQHGLGRVIGVEE 69
>gi|225621185|ref|YP_002722443.1| RecG-like DNA helicase [Brachyspira hyodysenteriae WA1]
gi|225216005|gb|ACN84739.1| RecG-like DNA helicase [Brachyspira hyodysenteriae WA1]
Length = 696
Score = 37.5 bits (85), Expect = 0.97, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 32/122 (26%)
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ K+ + K +++ +L + + + S
Sbjct: 164 QKKLRTLIVDELVGFEKNMKYDIPSVIKKKYRLKSFVPSIMEMHFPTSFEALAEARESLI 223
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
ER + L+ + ++ + + +AI I+ +L S
Sbjct: 224 FEEFLTFQYIHLSERRPNILIKEERYNSANLLDNVKSSLSFELTSDQLDAIEEIKNDLFS 283
Query: 172 KS 173
Sbjct: 284 NK 285
>gi|15594926|ref|NP_212715.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi B31]
gi|195941715|ref|ZP_03087097.1| DNA recombinase (recG) [Borrelia burgdorferi 80a]
gi|216264673|ref|ZP_03436665.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 156a]
gi|218249676|ref|YP_002375089.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi ZS7]
gi|221218004|ref|ZP_03589470.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 72a]
gi|224532735|ref|ZP_03673352.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi WI91-23]
gi|224533522|ref|ZP_03674111.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi CA-11.2a]
gi|225549658|ref|ZP_03770624.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 118a]
gi|226321887|ref|ZP_03797413.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi Bol26]
gi|3914613|sp|O51528|RECG_BORBU RecName: Full=ATP-dependent DNA helicase recG
gi|2688498|gb|AAC66942.1| DNA recombinase (recG) [Borrelia burgdorferi B31]
gi|215981146|gb|EEC21953.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 156a]
gi|218164864|gb|ACK74925.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi ZS7]
gi|221191952|gb|EEE18173.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 72a]
gi|224512353|gb|EEF82737.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi WI91-23]
gi|224513195|gb|EEF83557.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi CA-11.2a]
gi|225369935|gb|EEG99382.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 118a]
gi|226233076|gb|EEH31829.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi Bol26]
gi|312148401|gb|ADQ31060.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi JD1]
gi|312149549|gb|ADQ29620.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi N40]
Length = 686
Score = 37.5 bits (85), Expect = 1.00, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 27/73 (36%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
E K + +++ R S ++ L + L ++V + + + +
Sbjct: 211 EMLEKAKKTLIYREIFLLQFFSRYRSSKILFREKKDLSKDLLEKVVSSLPFELTEDQKIS 270
Query: 162 INLIEVNLSSKSS 174
I+ I +L+S
Sbjct: 271 IDEIFFDLNSSKP 283
>gi|226321047|ref|ZP_03796590.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 29805]
gi|226233571|gb|EEH32309.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 29805]
Length = 686
Score = 37.5 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 27/73 (36%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
E K + +++ R S ++ L + L ++V + + + +
Sbjct: 211 EMLEKAKKTLIYREIFLLQFFSRYRSSKILFREKKDLSKDLLEKVVSSLPFELTEDQKIS 270
Query: 162 INLIEVNLSSKSS 174
I+ I +L+S
Sbjct: 271 IDEIFFDLNSSKP 283
>gi|258510954|ref|YP_003184388.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477680|gb|ACV57999.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 705
Score = 37.1 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 10 MRQGFRTGEHIVYPAHGVGTITEIKE 35
+ R G+ +V+P HG G + ++
Sbjct: 646 EPEVLRPGDRVVHPQHGQGIVLSVES 671
>gi|1352376|sp|P20872|ENV_HV2ST RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env
polyprotein; Contains: RecName: Full=Surface protein
gp120; Short=SU; AltName: Full=Glycoprotein 120;
Short=gp120; Contains: RecName: Full=Transmembrane
protein gp41; Short=TM; AltName: Full=Glycoprotein 41;
Short=gp41; Flags: Precursor
gi|325758|gb|AAB01358.1| env polyprotein [Human immunodeficiency virus 2]
Length = 859
Score = 37.1 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 28/105 (26%)
Query: 22 YPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERA 81
Y +GV + I + ++ + P I + K E E
Sbjct: 670 YIQYGVYIVVGIIVLRIVIYVVQMLSRLRKGYRPVFSSPPAYFQQIHIHKDREQPAREET 729
Query: 82 LKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ V W R + + L + + RDL
Sbjct: 730 EEDVGNSVGDNWWPWPIRYIHFLIRQLIRLLNRLYNICRDLLSRS 774
>gi|74667|pir||VCLJST env polyprotein precursor - human immunodeficiency virus type 2
(isolate ST)
Length = 859
Score = 37.1 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 28/105 (26%)
Query: 22 YPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERA 81
Y +GV + I + ++ + P I + K E E
Sbjct: 670 YIQYGVYIVVGIIVLRIVIYVVQMLSRLRKGYRPVFSSPPAYFQQIHIHKDREQPAREET 729
Query: 82 LKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ V W R + + L + + RDL
Sbjct: 730 EEDVGNSVGDNWWPWPIRYIHFLIRQLIRLLNRLYNICRDLLSRS 774
>gi|160915456|ref|ZP_02077667.1| hypothetical protein EUBDOL_01464 [Eubacterium dolichum DSM 3991]
gi|158432576|gb|EDP10865.1| hypothetical protein EUBDOL_01464 [Eubacterium dolichum DSM 3991]
Length = 550
Score = 37.1 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 15/143 (10%)
Query: 31 TEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKAR 90
I ++E+ + + A K+ + +P +L E +AL +
Sbjct: 22 EGITQKELEKYIDKAY--ALMKEAITDFIPPSLRQK---YRLIERS---QALLYIHHPYD 73
Query: 91 VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREI 150
S R +Y+ + ++D +Q + R+ +
Sbjct: 74 ENSLKQSLRHLKYEEFLK---FQLAMRCIKD----QESKLVKGQGKQFEREEVMRLKHTL 126
Query: 151 AAVNSISEPEAINLIEVNLSSKS 173
A S + + I I +L+S+
Sbjct: 127 AFELSEDQEKVIEEIMDDLASEK 149
>gi|224160373|ref|XP_002338201.1| predicted protein [Populus trichocarpa]
gi|222871214|gb|EEF08345.1| predicted protein [Populus trichocarpa]
Length = 195
Score = 37.1 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKL--EFFVIAFDKDKMCLKVP 60
R+G+++V+ G+G IK G E+ I + L V
Sbjct: 130 KVDPYTLRSGDYVVHKKVGIGRFFGIKFDVPKGSSEAIEYVFIEYADGMAKLPVM 184
>gi|223888856|ref|ZP_03623447.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 64b]
gi|223885672|gb|EEF56771.1| ATP-dependent DNA helicase RecG [Borrelia burgdorferi 64b]
Length = 686
Score = 37.1 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 27/73 (36%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
E K + +++ R S ++ L + L ++V + + + +
Sbjct: 211 EMLEKAKKTLIYREIFLLQFFSRYRSSKILFREKKDLSKDLLEKVVSSLPFELTEDQKIS 270
Query: 162 INLIEVNLSSKSS 174
IN I +L+S
Sbjct: 271 INEIFFDLNSSKP 283
>gi|229817712|ref|ZP_04447994.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
20098]
gi|229785501|gb|EEP21615.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
20098]
Length = 889
Score = 37.1 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 4/22 (18%), Positives = 14/22 (63%)
Query: 13 GFRTGEHIVYPAHGVGTITEIK 34
F G+++ + +G+G + +++
Sbjct: 838 DFSIGDYVTHDQYGLGKVVDLQ 859
>gi|224532134|ref|ZP_03672766.1| ATP-dependent DNA helicase RecG [Borrelia valaisiana VS116]
gi|224511599|gb|EEF82005.1| ATP-dependent DNA helicase RecG [Borrelia valaisiana VS116]
Length = 686
Score = 37.1 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 26/73 (35%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
E K + +++ R S ++ L + L R+V + + + +
Sbjct: 211 EMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREKKHLSKDLLERVVSSLPFELTEDQRIS 270
Query: 162 INLIEVNLSSKSS 174
I+ I +L S
Sbjct: 271 IDEIFSDLGSSKP 283
>gi|289810050|ref|ZP_06540679.1| transcription-repair coupling factor [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 197
Score = 37.1 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 3/35 (8%), Positives = 10/35 (28%)
Query: 140 ESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + +AIN + ++ +
Sbjct: 1 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 35
>gi|203284487|ref|YP_002222227.1| DNA recombinase [Borrelia duttonii Ly]
gi|203288021|ref|YP_002223036.1| DNA recombinase [Borrelia recurrentis A1]
gi|201083930|gb|ACH93521.1| DNA recombinase [Borrelia duttonii Ly]
gi|201085241|gb|ACH94815.1| DNA recombinase [Borrelia recurrentis A1]
Length = 687
Score = 37.1 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 51/179 (28%), Gaps = 37/179 (20%)
Query: 33 IKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVK 92
++ G K + D + +I + + L G + K
Sbjct: 105 LERIFKIGQKFYIYARFSYNDYTKMWSCSNFDSEIFSYNPVKFKKIMPVYSLSEGLSSKK 164
Query: 93 RTMWSRRAQEYDAKINSGDL----------IAIAEVVRDLHR-------TDSQPEKSYSE 135
+ + + A Y K D+ +++ E + ++H ++ Y E
Sbjct: 165 ISSYVKGALAYFVKFGQSDIPKFLINKYSLLSLHEALNEIHFPSSLEMLRRAKKTLVYRE 224
Query: 136 RQLYE------------SALNRM--------VREIAAVNSISEPEAINLIEVNLSSKSS 174
L + A + + +++ + + AI I +L +
Sbjct: 225 IFLLQFFSRGKSYRVFLRAEKNLSNDLLKQIISKLSFELTRDQKIAITEIINDLKNNKP 283
>gi|160871992|ref|ZP_02062124.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli]
gi|159120791|gb|EDP46129.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli]
Length = 721
Score = 37.1 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 12/132 (9%), Positives = 37/132 (28%), Gaps = 4/132 (3%)
Query: 46 FVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDA 105
+ +++++ ++ + R A + +RR
Sbjct: 192 MTTEKPFVHKQQHYFPDYLPEHLLKRIALPSLLDALYYIHRPPANAPLDLLARRKHIAQQ 251
Query: 106 KINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAAVNSISEPEAINL 164
++ L + + + + + R SA + R + + S+ I
Sbjct: 252 RLA---LEELLAHSLSVQQMKKKRAAGIAPRFKLNSALMKRFQTALPFQLTSSQQRIIKE 308
Query: 165 IEVNLSSKSSKT 176
I ++ +
Sbjct: 309 INQDMQRATPMQ 320
>gi|319956410|ref|YP_004167673.1| ATP-dependent DNA helicase recg [Nitratifractor salsuginis DSM
16511]
gi|319418814|gb|ADV45924.1| ATP-dependent DNA helicase RecG [Nitratifractor salsuginis DSM
16511]
Length = 606
Score = 36.7 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 8/57 (14%), Positives = 17/57 (29%)
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ R Y + + V + + + + I I+ +LS K
Sbjct: 191 EAYNHLRKLRSKRHDYPALKALNRPIEPFVETLPFTLTPDQQKVIAEIQKDLSQKEK 247
>gi|42519402|ref|NP_965332.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533]
gi|41583690|gb|AAS09298.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533]
Length = 679
Score = 36.7 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 10/165 (6%)
Query: 21 VYPAHGVGT--ITEIK---EQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE- 74
VY + V + K E++ +G + V K L+ + A+ + ++ E
Sbjct: 117 VYGKYQVARQSFSGFKLVAEKKDSGFAPIYSVNRHLKQN-KLQKLIDLALQEAINEVGET 175
Query: 75 -AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK-- 131
+ +L+ + V++ + E S L + SQ +
Sbjct: 176 IPASIREKYRLLSDRVLVEKMHHPKNGNEAKIARRSAIFREFFLFQMQLAQLLSQRNEDA 235
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
E++ +A+ ++ EI S + + +N I +L SK
Sbjct: 236 PGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMR 280
>gi|227890267|ref|ZP_04008072.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200]
gi|227849081|gb|EEJ59167.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200]
Length = 679
Score = 36.7 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 10/165 (6%)
Query: 21 VYPAHGVGT-----ITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP----VGKAIDIGMRK 71
VY + V + E++ +G + V K K+ ++G
Sbjct: 117 VYGKYQVARQSLSGFKLVAEKKDSGFAPIYSVNRHLKQNKLQKLIDLALEETINEVGETI 176
Query: 72 LSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK 131
+ R L ++ A+ D + L + +
Sbjct: 177 PASIREKYRLLSDRVLVEKMHHPKNENEAKIARRSAIFRDFFLFQMQLAQL-LSQRNEDA 235
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
E++ +A+ ++ EI S + + +N I +L SK
Sbjct: 236 PGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMR 280
>gi|290959128|ref|YP_003490310.1| hypothetical protein SCAB_47141 [Streptomyces scabiei 87.22]
gi|260648654|emb|CBG71767.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 73
Score = 36.7 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 11 RQGFRTGEHIVYPAHGVGTITEIK 34
+ F G+ + + +G+G + I+
Sbjct: 24 PKHFAVGDQVTHDMYGLGRVIGIE 47
>gi|126696154|ref|YP_001091040.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
9301]
gi|126543197|gb|ABO17439.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
9301]
Length = 818
Score = 36.7 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 11/109 (10%), Positives = 31/109 (28%), Gaps = 2/109 (1%)
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV-VR-DLHRT 125
+L L+ + + Q + + ++ L +
Sbjct: 305 KQYPEILNKKQLDSLSLLSKGESLINIHFPPTQQALIESKKRLVFDELFLLQIKFLLRKR 364
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +S L + + S+ +N I+ +LS+
Sbjct: 365 KTNKNVTSQQLPQKKSLLKEFLNNFPFELTKSQENVLNEIKKDLSNPVP 413
>gi|219685205|ref|ZP_03540025.1| ATP-dependent DNA helicase RecG [Borrelia garinii Far04]
gi|219673301|gb|EED30320.1| ATP-dependent DNA helicase RecG [Borrelia garinii Far04]
Length = 686
Score = 36.7 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 26/73 (35%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
E K + +++ R S ++ L L R+V + + + +
Sbjct: 211 EMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREKKHLSRDLLERVVSSLPFELTEDQKIS 270
Query: 162 INLIEVNLSSKSS 174
++ I +LSS
Sbjct: 271 VDEIFSDLSSSKP 283
>gi|119493842|ref|ZP_01624409.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106]
gi|119452434|gb|EAW33623.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106]
Length = 784
Score = 36.7 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 2 TFQQKRDAMRQGFRTGEHIVYPAHGVGTITEI 33
+ K+ + + F G+ +++ + GVG +T I
Sbjct: 721 SKNNKKSSKVESFAVGDRVLHRSFGVGQVTHI 752
>gi|219684327|ref|ZP_03539271.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBr]
gi|219672316|gb|EED29369.1| ATP-dependent DNA helicase RecG [Borrelia garinii PBr]
Length = 686
Score = 36.7 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 26/73 (35%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
E K + +++ R S ++ L L R+V + + + +
Sbjct: 211 EMLEKAKKTLIYREIFLLQFFSRYRSSKVLFREKKHLSRDLLERVVSSLPFELTEDQKIS 270
Query: 162 INLIEVNLSSKSS 174
++ I +LSS
Sbjct: 271 VDEIFSDLSSSKP 283
>gi|161507718|ref|YP_001577679.1| ATP-dependent DNA helicase RecG [Lactobacillus helveticus DPC 4571]
gi|160348707|gb|ABX27381.1| ATP-dependent DNA [Lactobacillus helveticus DPC 4571]
Length = 676
Score = 36.7 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 21/171 (12%), Positives = 54/171 (31%), Gaps = 9/171 (5%)
Query: 11 RQGFRTGEHI-VYPAHGVGT-----ITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+ GE + +Y + V I +E + + + L + A
Sbjct: 104 KSKIEIGEEVAIYGKYNVARQSLSAFKFIAAKENDSGMAPIYPVNRHVKQKKLVSLINLA 163
Query: 65 IDI---GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
ID+ +R + + E+ L + K + AK ++ ++
Sbjct: 164 IDVFLDQVRDIVPENIREKYRLLTDQEIIQKMHHPKNSTEANLAKRSAIFREFFIFELQL 223
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ +++ + + ++ + S + E +N I ++ S
Sbjct: 224 ALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSS 274
>gi|260101410|ref|ZP_05751647.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075]
gi|260084750|gb|EEW68870.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075]
Length = 679
Score = 36.7 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 21/171 (12%), Positives = 54/171 (31%), Gaps = 9/171 (5%)
Query: 11 RQGFRTGEHI-VYPAHGVGT-----ITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+ GE + +Y + V I +E + + + L + A
Sbjct: 107 KSKIEIGEEVAIYGKYNVARQSLSAFKFIAAKENDSGMAPIYPVNRHVKQKKLVSLINLA 166
Query: 65 IDI---GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
ID+ +R + + E+ L + K + AK ++ ++
Sbjct: 167 IDVFLDQVRDIVPENIREKYRLLTDQEIIQKMHHPKNSTEANLAKRSAIFREFFIFELQL 226
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ +++ + + ++ + S + E +N I ++ S
Sbjct: 227 ALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSS 277
>gi|323449501|gb|EGB05389.1| hypothetical protein AURANDRAFT_66466 [Aureococcus anophagefferens]
Length = 863
Score = 36.7 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 18/206 (8%), Positives = 52/206 (25%), Gaps = 40/206 (19%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITE------------------------------IKE 35
+ + F G+++V+ GV ++
Sbjct: 63 RSEIQTLVFE-GDYVVHYERGVCQYAGRLQERDDDDGDGGGDGELPILLRFADRTVALEH 121
Query: 36 QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM 95
+E + + + V + + A + V G
Sbjct: 122 REASR------LTRLRGSDETVAVRSSELFQPADGPAAAAPPPSLGSENVGGSPSTSGPR 175
Query: 96 WSRRAQ-EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY--ESALNRMVREIAA 152
S+ ++ E A + RDL + + + A + +
Sbjct: 176 LSKWSKPEVWRGKRDRAEAASRDHARDLLTLAAARSSRSRDACAPFDDEAAALLEAGLGY 235
Query: 153 VNSISEPEAINLIEVNLSSKSSKTEK 178
+ + + +E ++ + + ++
Sbjct: 236 ELTAGQRQCWEDVEEDMCRRLAPMDR 261
>gi|331220026|ref|XP_003322689.1| hypothetical protein PGTG_04226 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301679|gb|EFP78270.1| hypothetical protein PGTG_04226 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 714
Score = 36.7 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 4/111 (3%)
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV 118
+ R++S+ K + + + R + I E+
Sbjct: 334 ISTPTHHQSRPRRVSDGSINGGVRKDILLQRMAEALQSERAKAIVFQRELQNAEREIDEL 393
Query: 119 VRDLHRTDSQPEKSY----SERQLYESALNRMVREIAAVNSISEPEAINLI 165
L + K+ + +L + +V + A + + EA +
Sbjct: 394 ANTLDEQRREHHKTIVNLRKDIKLLKKERESLVEALEAAEGVEQEEAERYL 444
>gi|254526118|ref|ZP_05138170.1| Type III restriction enzyme, res subunit family [Prochlorococcus
marinus str. MIT 9202]
gi|221537542|gb|EEE39995.1| Type III restriction enzyme, res subunit family [Prochlorococcus
marinus str. MIT 9202]
Length = 618
Score = 36.7 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + + + +S L + + S+ +N I+ +LS+
Sbjct: 161 LRKRKTNKNVISQQLPQKKSLLKEFLNTFPFELTKSQENVLNEIKKDLSNPVP 213
>gi|123968352|ref|YP_001009210.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str.
AS9601]
gi|123198462|gb|ABM70103.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str.
AS9601]
Length = 815
Score = 36.3 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 2/109 (1%)
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEV-VR-DLHRT 125
+L L+ + + Q + + ++ L +
Sbjct: 302 KQYPEILNKKQLDSLSLLSKGESLINIHFPPTQQALIESKKRLVFDELFLLQIKFLLRKR 361
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + +S L + + S+ +N I+ +LS+
Sbjct: 362 KTKKNVNPQQLPQKKSLLKEFLDTFPFELTKSQENVLNEIKKDLSNPVP 410
>gi|312197728|ref|YP_004017789.1| hypothetical protein FraEuI1c_3913 [Frankia sp. EuI1c]
gi|311229064|gb|ADP81919.1| hypothetical protein FraEuI1c_3913 [Frankia sp. EuI1c]
Length = 133
Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 4/22 (18%), Positives = 14/22 (63%)
Query: 14 FRTGEHIVYPAHGVGTITEIKE 35
F G+ +++ +G+G + +++
Sbjct: 87 FAIGDRVIHDTYGLGQVIGVEQ 108
>gi|225552492|ref|ZP_03773432.1| ATP-dependent DNA helicase RecG [Borrelia sp. SV1]
gi|225371490|gb|EEH00920.1| ATP-dependent DNA helicase RecG [Borrelia sp. SV1]
Length = 686
Score = 36.3 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 27/73 (36%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
E K + +++ R S ++ L + L ++V + + + +
Sbjct: 211 EMLEKAKKTLIYREIFLLQFFSRYRSSKILFREKKDLSKDLLEKVVSSLPFELTGDQKIS 270
Query: 162 INLIEVNLSSKSS 174
I+ I +L+S
Sbjct: 271 IDEIFFDLNSSKP 283
>gi|313885076|ref|ZP_07818828.1| ATP-dependent DNA helicase RecG [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619767|gb|EFR31204.1| ATP-dependent DNA helicase RecG [Eremococcus coleocola
ACS-139-V-Col8]
Length = 674
Score = 36.3 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 8/75 (10%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 98 RRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSIS 157
RR Y + + + + + + ++ + ++E+ +
Sbjct: 206 RRKIIYQEFFD----YQWQLQTASFNHRQDKGLQVHYDVEVLK----VFIKELPFELTSD 257
Query: 158 EPEAINLIEVNLSSK 172
+ +A+N I ++L +
Sbjct: 258 QKKAVNEICLDLLAP 272
>gi|302670353|ref|YP_003830313.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
gi|302394826|gb|ADL33731.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
Length = 847
Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 1 MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKE 35
M Q + ++TG+ + + +G+GT+T ++E
Sbjct: 788 MPTQ----TTKPEYQTGDRVSHVKYGIGTVTSLEE 818
>gi|147676452|ref|YP_001210667.1| hypothetical protein PTH_0117 [Pelotomaculum thermopropionicum SI]
gi|146272549|dbj|BAF58298.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 592
Score = 36.3 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 1/32 (3%), Positives = 9/32 (28%)
Query: 143 LNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + A+ ++ ++
Sbjct: 13 QKELEEAFPYEETPDQLRAVEEVKADMERPRP 44
>gi|315638600|ref|ZP_07893774.1| ATP-dependent DNA helicase PcrA [Campylobacter upsaliensis JV21]
gi|315481224|gb|EFU71854.1| ATP-dependent DNA helicase PcrA [Campylobacter upsaliensis JV21]
Length = 677
Score = 35.9 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKE----QEVAGMKL 43
+GF+ G+ + + GVG I I + G++
Sbjct: 631 EGFKKGDLVRHKIFGVGRIVGINKDKLSINFGGIER 666
>gi|322380295|ref|ZP_08054511.1| DNA recombinase RecG [Helicobacter suis HS5]
gi|321147278|gb|EFX41962.1| DNA recombinase RecG [Helicobacter suis HS5]
Length = 613
Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 141 SALNRMVREIAAVNSISEPEAINLIEVNLS 170
AL + ++ + + +AI+ I+ +L
Sbjct: 224 QALQEFLDKLPFTLTPDQQKAISSIKQDLQ 253
>gi|296082243|emb|CBI21248.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 30/89 (33%)
Query: 85 VRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALN 144
+ +++ RT+ + +AI ++V DL K +
Sbjct: 18 LPSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYLHRLKQKRPPYPKSPGMA 77
Query: 145 RMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + + + +A +E +L+ +
Sbjct: 78 EFEAQFSYEPTPDQKQAFIDVEEDLTERE 106
>gi|322379509|ref|ZP_08053874.1| DNA recombinase (recG) [Helicobacter suis HS1]
gi|321148064|gb|EFX42599.1| DNA recombinase (recG) [Helicobacter suis HS1]
Length = 613
Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 141 SALNRMVREIAAVNSISEPEAINLIEVNLS 170
AL + ++ + + +AI+ I+ +L
Sbjct: 224 QALQEFLDKLPFTLTPDQQKAISSIKQDLQ 253
>gi|261414687|ref|YP_003248370.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|261371143|gb|ACX73888.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|302325603|gb|ADL24804.1| ATP-dependent DNA helicase, UvrD/REP family [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 803
Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV 38
+ A F G+ +V+ G+GT++ + ++
Sbjct: 748 KKAPTAEFAVGDRVVHKIFGIGTVSGVDKKNF 779
>gi|212551015|ref|YP_002309332.1| cofactor-independent phosphoglycerate mutase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
gi|212549253|dbj|BAG83921.1| phosphoglycerate mutase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 402
Score = 35.9 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 17/161 (10%)
Query: 6 KRDAMRQGFRTG------EHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKV 59
K GF+ G + I HG+G + +K V G + K K ++
Sbjct: 231 KTMQEMYGFKKGAVISAVDLI----HGIGIYSGLKNIFVKGATGLYNTNYEGKAKAAIEA 286
Query: 60 PVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRA-----QEYDAKINSGDLIA 114
+ + + + +++ K R Q+YD G L
Sbjct: 287 -LKTNDFVYLHVEASDEAGHEGNVMLKVKTIEDIDNRIVRPIYETLQQYDNLTAIGILPD 345
Query: 115 IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNS 155
T+ +R ++ + E + N
Sbjct: 346 HPTPCAIRTHTNKPVPFLIYKRGNQPDSVEKF-DEFSVENG 385
>gi|320104388|ref|YP_004179979.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
gi|319751670|gb|ADV63430.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
Length = 841
Score = 35.9 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEI 33
+ + G +++P +G+G +T I
Sbjct: 774 PQDVERLKPGTAVLHPHYGLGRVTGI 799
>gi|213965014|ref|ZP_03393213.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
gi|213952550|gb|EEB63933.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
Length = 899
Score = 35.9 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIK 34
++ G+ +V+ +G+GT+ E++
Sbjct: 840 RKKNQVLHLEPGDKVVHDKYGLGTVLEVQ 868
>gi|307324213|ref|ZP_07603421.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
4113]
gi|306889944|gb|EFN20922.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
4113]
Length = 73
Score = 35.9 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 8 DAMRQGFRTGEHIVYPAHGVGTITEIK 34
+ F G+ + + +G+G + I+
Sbjct: 21 TPAPKHFAVGDQVTHDIYGLGRVIGIE 47
>gi|94676686|ref|YP_588583.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|94219836|gb|ABF13995.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 699
Score = 35.9 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 9/72 (12%), Positives = 23/72 (31%)
Query: 103 YDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAI 162
Y A+ IA + L + + + + + +I++ A+
Sbjct: 221 YPAQRRLILEELIAYYLSLLSARTVEKKLLALPLNNKTDLIQCFISSLPFSLTIAQQRAV 280
Query: 163 NLIEVNLSSKSS 174
I+ +L+
Sbjct: 281 MEIDQDLARNIP 292
>gi|225574543|ref|ZP_03783153.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM
10507]
gi|225038230|gb|EEG48476.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM
10507]
Length = 737
Score = 35.5 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE 44
+ A + + G+ + + GVG + I E G E
Sbjct: 680 KKADKLSYEVGDTVRHVKFGVGIVKNIVE---GGKDYE 714
>gi|296121173|ref|YP_003628951.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
3776]
gi|296013513|gb|ADG66752.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
3776]
Length = 703
Score = 35.5 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Query: 101 QEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY--ESALNRMVREIAAVNSISE 158
+EY+ L + E L + L + R+ R + +
Sbjct: 207 EEYERSRKRLLLEDLLEFQLGLALRRRMRIEQQEAIALPADQRIRARIARLFPFEWTNGQ 266
Query: 159 PEAINLIEVNLSSKSS 174
EA+ I +L
Sbjct: 267 NEALEEILTDLEKTRP 282
>gi|293402639|ref|ZP_06646739.1| hypothetical protein HMPREF0863_02883 [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291303921|gb|EFE45210.1| hypothetical protein HMPREF0863_02883 [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 126
Score = 35.5 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Query: 59 VPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAE- 117
+P G+R++ + L + A ++ D+ A+ +
Sbjct: 11 IPYKNMDKAGVREIMDIATARLILDRIFHPAIHADYGKELSELLKMRNYSNIDMNALVDV 70
Query: 118 VVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLI 165
+ ++ ++ + ++ E R+ E+A V + + + I +
Sbjct: 71 YIYLMNWKYAERKCGMKNQECLERIQERLCDELAFVLDVGKEQLIAHL 118
>gi|153931653|ref|YP_001383067.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
str. ATCC 19397]
gi|153934674|ref|YP_001386616.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
str. Hall]
gi|152927697|gb|ABS33197.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
str. ATCC 19397]
gi|152930588|gb|ABS36087.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
str. Hall]
Length = 884
Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 19/181 (10%), Positives = 42/181 (23%), Gaps = 13/181 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ F+ GE I++ G+G I I + +
Sbjct: 661 NKSNNIKFKIGERIIHKLLGLGVIIGID----NDNSSYMIKFDNAETFRNISFSTQLDKA 716
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+A+ + + R + + + + R
Sbjct: 717 DTNNLDIIKSNERKAIDHLEAERLEAERKEQERLEAERLEAERKEQERLEAE-RLEAERK 775
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186
Q + R+ E EA + L ++ + E+ E +
Sbjct: 776 EQERLEAERLEAERKEQERLEAE--------RLEAERKEQERLEAERLEAERKEQERLEA 827
Query: 187 A 187
Sbjct: 828 E 828
>gi|148378683|ref|YP_001253224.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
gi|148288167|emb|CAL82235.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
Length = 884
Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 19/181 (10%), Positives = 42/181 (23%), Gaps = 13/181 (7%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ F+ GE I++ G+G I I + +
Sbjct: 661 NKSNNIKFKIGERIIHKLLGLGVIIGID----NDNSSYMIKFDNAETFRNISFSTQLDKA 716
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+A+ + + R + + + + R
Sbjct: 717 DTNNLDIIKSNERKAIDHLEAERLEAERKEQERLEAERLEAERKEQERLEAE-RLEAERK 775
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186
Q + R+ E EA + L ++ + E+ E +
Sbjct: 776 EQERLEAERLEAERKEQERLEAE--------RLEAERKEQERLEAERLEAERKEQERLEA 827
Query: 187 A 187
Sbjct: 828 E 828
>gi|325279000|ref|YP_004251542.1| MutS2 protein [Odoribacter splanchnicus DSM 20712]
gi|324310809|gb|ADY31362.1| MutS2 protein [Odoribacter splanchnicus DSM 20712]
Length = 827
Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 4/149 (2%)
Query: 40 GMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRR 99
G + + K I + VE+ + + +R+++ +
Sbjct: 520 GEDHINYDKHLKDIARDKRYWEEKRRRIHENEKRLDEVVEKYRQELTEASRLRKEIIKEA 579
Query: 100 AQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEP 159
Q+ I+S + I + +RD+ ++ EK+ RQ E+ R++ E A+ E
Sbjct: 580 QQKAQEIIHSANKT-IEQTIRDIRENQAEKEKTKEIRQKMEAEKERLLSEQASAE---EE 635
Query: 160 EAINLIEVNLSSKSSKTEKSTSENQDKAA 188
+E + + +K K+ + A+
Sbjct: 636 RIRKKMEKLQNREKNKKTKNKASASTPAS 664
>gi|327399690|ref|YP_004340559.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
DSM 10411]
gi|327182319|gb|AEA34500.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
Length = 716
Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 14/168 (8%), Positives = 47/168 (27%), Gaps = 25/168 (14%)
Query: 7 RDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ + F + IVYP ++ +A K + ++ + L
Sbjct: 172 KLIKAKEFEPSKRIVYPN------IGLRNTTIAKAKEKAMLMLPKRPFDYL--------- 216
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD 126
+ + + + ++ Q+Y+ + + +++ T
Sbjct: 217 --PYSVISKNNLPLLDEFFEHLKSDGADSSIQKRQKYEEMF----FLLLGLRLQEKRLTQ 270
Query: 127 SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
++ + + + + +AI I +++
Sbjct: 271 KTAPSIETQADFLDEVKKHL----PFELTNGQIQAIGEILKDMTRSKP 314
>gi|296109414|ref|YP_003616363.1| Protein of unknown function DUF2098 [Methanocaldococcus infernus
ME]
gi|295434228|gb|ADG13399.1| Protein of unknown function DUF2098 [Methanocaldococcus infernus
ME]
Length = 93
Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 7 RDAMRQGFRTGEHIVYPAHG-VGTITEIKEQEVAGMKLEFFV 47
RDA + + G++++Y G G + +I E+E + +
Sbjct: 4 RDAEGKEIKIGDYVIYINTGSKGRVVDIVEREGYDNNIWVLL 45
>gi|296127094|ref|YP_003634346.1| DEAD/DEAH box helicase domain protein [Brachyspira murdochii DSM
12563]
gi|296018910|gb|ADG72147.1| DEAD/DEAH box helicase domain protein [Brachyspira murdochii DSM
12563]
Length = 696
Score = 35.5 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 35/122 (28%)
Query: 52 KDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGD 111
+ K+ + + K + +++ +L + + + + D S
Sbjct: 164 QKKLRTLIVDELEVFEKNMKYDIPNMIKKKYRLKSFVSSIIEMHFPTSFEALDEARESLI 223
Query: 112 LIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171
ER + L ++ + + + AI I+ +L S
Sbjct: 224 FEEFLTFQYIHLSERRPNILIKDERYNSSTMLEKVKSALPFELTEDQLNAIEEIKNDLFS 283
Query: 172 KS 173
K
Sbjct: 284 KK 285
>gi|323466296|gb|ADX69983.1| DNA helicase RecG [Lactobacillus helveticus H10]
Length = 679
Score = 35.5 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 19/171 (11%), Positives = 51/171 (29%), Gaps = 9/171 (5%)
Query: 11 RQGFRTGEHI-VYPAHGVGT-----ITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKA 64
+ GE + +Y + V I +E + + + L + A
Sbjct: 107 KSKIEIGEEVAIYGKYNVARQSLSAFKFIAAKENDSGMAPIYPVNRHVKQKKLVSLINLA 166
Query: 65 I---DIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRD 121
+R + + E+ L + K + AK ++ ++
Sbjct: 167 TDGFLDQVRDIVPENIREKYRLLTDQEIIQKMHHPKNSTEANLAKRSAIFREFFIFELQL 226
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSK 172
+ +++ + + ++ + S + E +N I ++ S
Sbjct: 227 ALLANHDGKQAGYPKNYDLKEIAQLTSSLPFELSDDQKEVVNEIFADMHSS 277
>gi|293374797|ref|ZP_06621102.1| conserved domain protein [Turicibacter sanguinis PC909]
gi|292646593|gb|EFF64598.1| conserved domain protein [Turicibacter sanguinis PC909]
Length = 37
Score = 35.5 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLE-FFV 47
FR ++I+Y GV + I+E++ + F+V
Sbjct: 1 MFRMNDYIMYGLTGVCKVIGIEEEKFLDYPQQSFYV 36
>gi|157413185|ref|YP_001484051.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
9215]
gi|157387760|gb|ABV50465.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
9215]
Length = 817
Score = 35.5 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 122 LHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
L + + + +S L + + S+ +N I+ +LS+
Sbjct: 360 LRKRKTNKNVISQQLPQKKSLLKEFLNTFPFELTKSQENVLNEIKKDLSNALP 412
>gi|329667073|gb|AEB93021.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii DPC 6026]
Length = 679
Score = 35.1 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 10/165 (6%)
Query: 21 VYPAHGVGT-----ITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE- 74
VY + V + E++ +G + V K L+ + A++ + ++ E
Sbjct: 117 VYGKYQVARQSLSGFKLVAEKKDSGFAPIYSVNRHLKQN-KLQKLIDLALEEAINEVGET 175
Query: 75 -AHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEK-- 131
+ +L+ + V++ + E S L + SQ +
Sbjct: 176 IPASIREKYRLLSDRVLVEKMHHPKNDNEAKIARRSAIFREFFLFQMQLAQLLSQRNEDA 235
Query: 132 SYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
E++ +A+ ++ EI S + + +N I +L SK
Sbjct: 236 PGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMR 280
>gi|302389602|ref|YP_003825423.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM
16646]
gi|302200230|gb|ADL07800.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM
16646]
Length = 674
Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 18/180 (10%), Positives = 50/180 (27%), Gaps = 13/180 (7%)
Query: 7 RDAMRQGFRTGEHIVYP-----AHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61
+ M+ F+ G+ +V +G I + Q+ + + +
Sbjct: 97 QPYMKDAFKPGDKLVLIGKIRKNYGEYEILNPEWQKFEKTDYVDYARICPVYPLTKGLTQ 156
Query: 62 GKAIDIGMRKLSEAHFVERAL--------KLVRGKARVKRTMWSRRAQEYDAKINSGDLI 113
I L + V+ L +L+ + ++ + ++
Sbjct: 157 KIMRKIIKSVLQDPLEVDEVLPQSVLKEYRLMPKASALRNIHFPESWEKLTKAQERFAFE 216
Query: 114 AIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKS 173
+ + T + + L ++ + + + + I I +L S
Sbjct: 217 ELLLFQLAMMITRRHLMGEKRKNTYKDFDLKPFLKNLPFSLTEGQKKVIKEIISDLKSDR 276
>gi|227499432|ref|ZP_03929543.1| RecG family helicase [Anaerococcus tetradius ATCC 35098]
gi|227218494|gb|EEI83737.1| RecG family helicase [Anaerococcus tetradius ATCC 35098]
Length = 663
Score = 35.1 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 6/147 (4%)
Query: 29 TITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGK 88
++ E E+ + + + K E L +
Sbjct: 128 IFCDLDEDEIGSIIPLYSLTKGLSHKQISTYVEEAL---KYYDSKEDIIDYSLLDKFKLN 184
Query: 89 ARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTD--SQPEKSYSERQLYESALNRM 146
R+ R + + I I ++++DL+ D + + LY + +
Sbjct: 185 KRIDNLREIHRPSSIENLRKAKSQIKIIDLLKDLYFLDYLKEKTRHKQSINLYYNLSEIL 244
Query: 147 VREIAAVNSISEPEAINLIEVNLSSKS 173
+EI + S+ +++ I +++S +
Sbjct: 245 -KEIPFTLTRSQEKSLIEILEDVASPN 270
>gi|269120962|ref|YP_003309139.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
gi|268614840|gb|ACZ09208.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
Length = 724
Score = 35.1 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV 38
K+ A+ ++ GE++ + G G +T I + V
Sbjct: 670 KKAAVDARYKIGEYVNHIKFGKGKVTGIDNKSV 702
>gi|187918444|ref|YP_001884007.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH]
gi|119861292|gb|AAX17087.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH]
Length = 687
Score = 35.1 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 28/73 (38%)
Query: 102 EYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEA 161
E K + +++ R S ER L + L++++ ++ + + A
Sbjct: 211 EMLEKAKKTLIYREIFLLQFFSRGKSSVFFLRKERNLPRNLLDQIILKLPFKLTKDQRVA 270
Query: 162 INLIEVNLSSKSS 174
I+ I +L S
Sbjct: 271 IDEIINDLESNKP 283
>gi|307151183|ref|YP_003886567.1| TIR protein [Cyanothece sp. PCC 7822]
gi|306981411|gb|ADN13292.1| TIR protein [Cyanothece sp. PCC 7822]
Length = 275
Score = 34.8 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 3/112 (2%)
Query: 69 MRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQ 128
++ A W ++ + + K+ SG ++ + + + L +
Sbjct: 90 FYDRIFPIVLKDAKIYKDEDRIDYLHYWDQKIKNLEDKLKSGSILDVTSIYKTLQQYADI 149
Query: 129 PEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
+ ++ N + E+ + I +E L S TEK
Sbjct: 150 KRNIDQLTDILKNI-NALTPELH--RQSDFEQIIQAVETRLEKDKSNTEKIP 198
>gi|261886355|ref|ZP_06010394.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 685
Score = 34.8 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE 37
F+ G+ I + G+G + EI + +
Sbjct: 636 EFKKGDLIKHKIFGIGRVMEITKIK 660
>gi|237734862|ref|ZP_04565343.1| ATP-dependent DNA helicase [Mollicutes bacterium D7]
gi|229382190|gb|EEO32281.1| ATP-dependent DNA helicase [Coprobacillus sp. D7]
Length = 672
Score = 34.8 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 42/142 (29%), Gaps = 16/142 (11%)
Query: 31 TEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKAR 90
I ++ G + F + +VP + L +
Sbjct: 142 EGITQKSFQGYVKKAL--NFYHGHIQDEVPTN---LLIKHHLIHKELALNLIHFPSNNDD 196
Query: 91 VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREI 150
VK + R +Y+ + + ++ R + ++Q L+ + ++
Sbjct: 197 VKEAL---RYLKYEEFLRFQLTMQYIKLSR--------KDNLGIKKQFNRQTLDEFIAQL 245
Query: 151 AAVNSISEPEAINLIEVNLSSK 172
+ + +A + +L +
Sbjct: 246 PFELTFDQEQAALEVINDLQKE 267
>gi|217979912|ref|YP_002364059.1| hypothetical protein Msil_3815 [Methylocella silvestris BL2]
gi|217505288|gb|ACK52697.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length = 909
Score = 34.8 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
G+R SE + K + A M + R +E D DL A + +R+ + ++
Sbjct: 495 GLRVASERLAAASSDKDLVDVADYLWQM-ALRLEEGDLSEAERDLRAAQQQLREALQRNA 553
Query: 128 QPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKSTSENQDK 186
PE+ +A+++ +RE A + +A + S S +EK DK
Sbjct: 554 PPEEIKRLTDNLRAAMDKFLREFAEQQQQKQEDADQSADDQRGSGKSISEKELKAMLDK 612
>gi|315930516|gb|EFV09562.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 305]
Length = 188
Score = 34.8 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 5/43 (11%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEI------KEQEVA 39
+ ++ + F G+ + + G+G + E+ ++ +
Sbjct: 129 KSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNIN 171
>gi|167755898|ref|ZP_02428025.1| hypothetical protein CLORAM_01415 [Clostridium ramosum DSM 1402]
gi|167704837|gb|EDS19416.1| hypothetical protein CLORAM_01415 [Clostridium ramosum DSM 1402]
Length = 672
Score = 34.8 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 45/142 (31%), Gaps = 16/142 (11%)
Query: 31 TEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKAR 90
I ++ G + F + +VP I + E AL L+ +
Sbjct: 142 EGITQKSFQGYVKKAL--NFYHGHIQDEVPTNLLIKHHL------IHKELALNLIHFPSN 193
Query: 91 VKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREI 150
+ R +Y+ + + ++ R + ++Q L+ + ++
Sbjct: 194 NGDVKEALRYLKYEEFLRFQLTMQYIKLSR--------KDNLGIKKQFNRQTLDEFIAQL 245
Query: 151 AAVNSISEPEAINLIEVNLSSK 172
+ + +A + +L +
Sbjct: 246 PFELTFDQEQAALEVINDLQKE 267
>gi|118475254|ref|YP_891891.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
82-40]
gi|118414480|gb|ABK82900.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
82-40]
Length = 685
Score = 34.8 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 13 GFRTGEHIVYPAHGVGTITEIKEQE 37
F+ G+ I + G+G + EI + +
Sbjct: 636 EFKKGDLIKHKIFGIGRVMEITKIK 660
>gi|254304235|ref|ZP_04971593.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148324427|gb|EDK89677.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 737
Score = 34.8 bits (78), Expect = 6.4, Method: Composition-based stats.
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 6 KRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEV 38
K+ GF+ G+ + + G+G I I +++
Sbjct: 681 KKVIDNLGFKVGDKVRHKKFGLGVIKSIDAKKI 713
>gi|153952234|ref|YP_001397786.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. doylei
269.97]
gi|152939680|gb|ABS44421.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
subsp. doylei 269.97]
Length = 691
Score = 34.8 bits (78), Expect = 6.4, Method: Composition-based stats.
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKE 35
+ ++ + F G+ + + G+G I E+ +
Sbjct: 632 KSKNQNIQKTSFCKGDLVKHKIFGIGRIVEVSK 664
>gi|323490496|ref|ZP_08095702.1| GCN5-related N-acetyltransferase [Planococcus donghaensis MPA1U2]
gi|323395762|gb|EGA88602.1| GCN5-related N-acetyltransferase [Planococcus donghaensis MPA1U2]
Length = 282
Score = 34.4 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 12/129 (9%)
Query: 57 LKVPVGKAIDIGMRKLSEAHFVE---------RALKLVRGKARV--KRTMWSRRAQEYDA 105
L P + R+L E + +V W+ E
Sbjct: 61 LMTPPHALQLVIFRRLPEIEKEIAGHLQNLGVKVSGIVGEHDTSRLFAKAWTDHTGEQVK 120
Query: 106 KINSGDLIAIAEVVRDLHRTD-SQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINL 164
+ L I V + L ++ S S + +L E ++ +A
Sbjct: 121 ILMDQGLYRIDAVNKGLQKSGGSWRVASNKDAKLLIEWYKLFEEETGIDRRSTQEQATQR 180
Query: 165 IEVNLSSKS 173
IE L K
Sbjct: 181 IEEFLERKE 189
>gi|268319221|ref|YP_003292877.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785]
gi|262397596|emb|CAX66610.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785]
Length = 679
Score = 34.4 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 126 DSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176
+ E++ +A+ ++ EI S + + +N I +L SK
Sbjct: 230 QRNEDAPGVEKKYDLAAVKELIEEIPFELSDDQKKVVNEIFADLHSKRQMR 280
>gi|75762570|ref|ZP_00742424.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489952|gb|EAO53314.1| CarD-like transcriptional regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 61
Score = 34.4 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 79 ERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSE 135
+ + + + W +R + KI +G++ AEVVRDL R + + S+
Sbjct: 5 KHIIHFFQHGESDRLLPWKQRHKVNTDKIKTGEIQEGAEVVRDLMRMKKEKALNTSD 61
>gi|301165526|emb|CBW25097.1| putative ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
Length = 713
Score = 34.4 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 4/145 (2%)
Query: 31 TEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKAR 90
+I+ + G+ DK L + DI + E + +
Sbjct: 172 LKIQYPTINGVNSSNIKKVIDKIPAQLW---REIEDIIPEDIREQRKLLPLDQSFLLIHA 228
Query: 91 VKRTMWSRRAQEYDAKINSGDLIA-IAEVVRDLHRTDSQPEKSYSERQLYESALNRMVRE 149
+ Y+ + E ++ R S + ++ + +
Sbjct: 229 KTEHLEKWSDGLYEEAKKRLIYEEFLDEQLKIHLRKKKNINISAIKLEIKDVDRKKYSSI 288
Query: 150 IAAVNSISEPEAINLIEVNLSSKSS 174
+ + + I ++L+S
Sbjct: 289 YPYELTPDQDSTLKEICIDLNSGKR 313
>gi|10336516|dbj|BAB13760.1| phospholipase C [Watasenia scintillans]
Length = 1112
Score = 34.4 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 13/157 (8%), Positives = 40/157 (25%), Gaps = 12/157 (7%)
Query: 30 ITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKA 89
+I ++ + + + K + S +++ L+ + K
Sbjct: 953 FNQIHKENMDKYVALCTEHYNAEADIAKKYIESLNDCLKTLIGSCTDDIKKKLQTIHDKE 1012
Query: 90 RVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHR------------TDSQPEKSYSERQ 137
+ + + K + E+ R + + +
Sbjct: 1013 VEAMNKEMNKKSKVEQKELGKETKDKEELARKKRESSKKLIDGIVQERNKLKALKERQEK 1072
Query: 138 LYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
+ + + +E A + +E I+ L
Sbjct: 1073 GLDKKVEELTKEFEAEKASAETTLKQQIDEKLKKAKE 1109
>gi|57242258|ref|ZP_00370197.1| DNA helicase II (uvrD) [Campylobacter upsaliensis RM3195]
gi|57016938|gb|EAL53720.1| DNA helicase II (uvrD) [Campylobacter upsaliensis RM3195]
Length = 677
Score = 34.4 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 12 QGFRTGEHIVYPAHGVGTITEIKE----QEVAGMKL 43
+GF+ G+ + + GVG I EI + G++
Sbjct: 631 EGFKKGDLVRHKIFGVGRIVEINKDKLSINFGGIER 666
>gi|85859510|ref|YP_461712.1| snf2-related protein with C-terminal helicase [Syntrophus
aciditrophicus SB]
gi|85722601|gb|ABC77544.1| snf2-related protein with C-terminal Helicase [Syntrophus
aciditrophicus SB]
Length = 1178
Score = 34.4 bits (77), Expect = 7.7, Method: Composition-based stats.
Identities = 16/151 (10%), Positives = 45/151 (29%), Gaps = 6/151 (3%)
Query: 34 KEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKR 93
K E+ + + +P G R+ S A + +
Sbjct: 350 KTVTFRLNSDEYTLYKSVTAYINEFIP----QQTGQRRSSAALTRTVLQRRLVSSTCAIH 405
Query: 94 TMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESA-LNRMVREIAA 152
RR ++ + + + + ++ + L + + + + A +++ E A
Sbjct: 406 ESLKRRLKKQEDLLEELEGLTPSQRAKRLAALQGRLPDAEQDEDDLDDAVRDQLADEYTA 465
Query: 153 VNSISEPEA-INLIEVNLSSKSSKTEKSTSE 182
+ + A I+ + + E +
Sbjct: 466 ALELEQLRAEISALRELVEQARRVREDANDS 496
>gi|332296364|ref|YP_004438287.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
gi|332179467|gb|AEE15156.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 667
Score = 34.4 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 1/138 (0%)
Query: 39 AGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSR 98
+G+ E+ + D + + L E+ L ++
Sbjct: 129 SGIYPEYCLEINDSEIRKTIKDIFDEKKEIKETLPESLINRLKLMKLKDALYNLHFPKDL 188
Query: 99 RAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISE 158
R+ E K + D + + L KS + + + + + +
Sbjct: 189 RSLESARKRIAFD-ELLQWKLTILTEKQKFSSKSAPILNPESDLVKKFLSSLPFTLTEDQ 247
Query: 159 PEAINLIEVNLSSKSSKT 176
+ I+ I ++S
Sbjct: 248 KKVIDEIFSDVSKNKPMQ 265
>gi|262276990|ref|ZP_06054783.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
gi|262224093|gb|EEY74552.1| conserved hypothetical protein [alpha proteobacterium HIMB114]
Length = 57
Score = 34.4 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 13 GFRTGEHIVYPAH---GVGTITEIKEQEV 38
+ G+ +++P+H G+G + I + +V
Sbjct: 5 DYDPGDFVIHPSHKDWGIGQVQSIVDNKV 33
>gi|78779148|ref|YP_397260.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
9312]
gi|78712647|gb|ABB49824.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
9312]
Length = 818
Score = 34.4 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 2/109 (1%)
Query: 68 GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
+L L+ + Q + +
Sbjct: 305 KQYPEILNQKQLDSLSLLSKGESLINIHLPPTQQALIESKKRLVFDELFLLQIKFLLRKR 364
Query: 128 QPEKSYSERQLYES--ALNRMVREIAAVNSISEPEAINLIEVNLSSKSS 174
Q K +QL + L + + S+ +N I+ +LS+
Sbjct: 365 QTNKHVIAKQLPQKKSLLKDFLNNFPFELTKSQVNVLNEIKKDLSNPVP 413
>gi|148707434|gb|EDL39381.1| mCG14648 [Mus musculus]
Length = 884
Score = 34.0 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 11/152 (7%)
Query: 36 QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTM 95
E AG++ E +V ++ + + ++ V + +
Sbjct: 229 LERAGIENENYVGPTKMHQL--------LNVLKREQSIYNTVFHELIRQVSVDCADRGEL 280
Query: 96 WSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNS 155
S+ ++Y ++ + E +DL ++ E +++ + + RE+ V +
Sbjct: 281 LSKIREKYVQMLD-HIAQQMIEFYKDLVTQRMMDQRILQELYNFKNVIEELTRELCLVQA 339
Query: 156 ISEP--EAINLIEVNLSSKSSKTEKSTSENQD 185
+ ++ NL+ + EK+ +D
Sbjct: 340 HDRKLTKEAEKVQKNLAEALLEAEKNAKIVED 371
>gi|153855740|ref|ZP_01996754.1| hypothetical protein DORLON_02772 [Dorea longicatena DSM 13814]
gi|149751963|gb|EDM61894.1| hypothetical protein DORLON_02772 [Dorea longicatena DSM 13814]
Length = 233
Score = 34.0 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQ 36
QK+ ++ G+ + +P G G + +I ++
Sbjct: 172 TAQKKKDEVVQYKLGDAVTHPKFGHGIVEKINQR 205
>gi|319401761|gb|EFV89969.1| argininosuccinate synthase [Staphylococcus epidermidis FRI909]
Length = 401
Score = 34.0 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 16/147 (10%), Positives = 43/147 (29%), Gaps = 6/147 (4%)
Query: 12 QGFRTGEHIVY-----PAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAID 66
+ ++ + I+Y HG+G I ++ + V E + + + +
Sbjct: 231 KEYQLDDLILYLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITL 290
Query: 67 IGMRKLSEAHFVERALKLVRGKARVKRTMWS-RRAQEYDAKINSGDLIAIAEVVRDLHRT 125
+ ++ + + S + + + GD+ +
Sbjct: 291 TKDVAHFKPVIEKQFSEQIYNGLWFSPLTDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNG 350
Query: 126 DSQPEKSYSERQLYESALNRMVREIAA 152
P Y E+ + + +E A
Sbjct: 351 RQSPYTLYDEKLATYTKEDAFNQEAAV 377
>gi|86150413|ref|ZP_01068639.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88596728|ref|ZP_01099965.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
subsp. jejuni 84-25]
gi|85839238|gb|EAQ56501.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88191569|gb|EAQ95541.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
subsp. jejuni 84-25]
gi|284926330|gb|ADC28682.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
subsp. jejuni IA3902]
Length = 691
Score = 34.0 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKE 35
+ ++ + F G+ + + G+G + E+ +
Sbjct: 632 KSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNK 664
>gi|57237983|ref|YP_179232.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni RM1221]
gi|57166787|gb|AAW35566.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
RM1221]
gi|315058542|gb|ADT72871.1| ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial
type 2 [Campylobacter jejuni subsp. jejuni S3]
Length = 691
Score = 34.0 bits (76), Expect = 10.0, Method: Composition-based stats.
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 3 FQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKE 35
+ ++ + F G+ + + G+G + E+ +
Sbjct: 632 KSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNK 664
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.306 0.124 0.320
Lambda K H
0.267 0.0382 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 996,464,169
Number of Sequences: 14124377
Number of extensions: 30427505
Number of successful extensions: 135878
Number of sequences better than 10.0: 3490
Number of HSP's better than 10.0 without gapping: 3278
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 129671
Number of HSP's gapped (non-prelim): 3656
length of query: 188
length of database: 4,842,793,630
effective HSP length: 131
effective length of query: 57
effective length of database: 2,992,500,243
effective search space: 170572513851
effective search space used: 170572513851
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 77 (34.4 bits)