RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD
family protein [Candidatus Liberibacter asiaticus str. psy62]
         (188 letters)



>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus
           (Penicillium simplicissimum) [TaxId: 69488]}
          Length = 287

 Score = 27.5 bits (60), Expect = 0.75
 Identities = 11/60 (18%), Positives = 22/60 (36%)

Query: 110 GDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNL 169
           GDL    +++R L    +          L ++A+    R  ++       E ++ I   L
Sbjct: 14  GDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQL 73


>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
           domain-containing protein 2, MCTP2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 126

 Score = 27.1 bits (59), Expect = 1.0
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%)

Query: 29  TITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGK 88
              ++    +  +     V  FD+D       +GK   I +  + +       LK    +
Sbjct: 52  EWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKV-AIPLLSIRDGQPNCYVLKNKDLE 110

Query: 89  ARVK 92
              K
Sbjct: 111 QAFK 114


>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 196

 Score = 26.0 bits (57), Expect = 1.9
 Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 80  RALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLY 139
           R L+ +R K + +  +  +    Y  K ++   I++   V            + S +QLY
Sbjct: 16  RDLQDIRIKNKERHHLCPQPGSLYLTKSSTLPRISLQAAV------GDSVPSACSPKQLY 69

Query: 140 ESALNRMVREIAAVNSIS 157
              +++    + + N+  
Sbjct: 70  MYGVSKACISVNSKNAEY 87


>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 72

 Score = 24.7 bits (54), Expect = 4.8
 Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 68  GMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQ-EYDAKINSGDLIAI-------AEVV 119
           GM   +  + +   L+ ++G  +   ++ +   Q  YD ++ +  +  I        E++
Sbjct: 10  GMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEIL 69

Query: 120 RD 121
           RD
Sbjct: 70  RD 71


>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain
           {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
          Length = 321

 Score = 24.4 bits (53), Expect = 7.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 129 PEKSYSERQLYESALNRM 146
           PE S  ERQ+++ AL ++
Sbjct: 302 PEGSDQERQVFQKALGKL 319


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 626,714
Number of extensions: 27326
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 11
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.1 bits)