BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD
family protein [Candidatus Liberibacter asiaticus str. psy62]
         (188 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD family protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 188

 Score =  389 bits (998), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60
           MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP
Sbjct: 1   MTFQQKRDAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVP 60

Query: 61  VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120
           VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR
Sbjct: 61  VGKAIDIGMRKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR 120

Query: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180
           DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST
Sbjct: 121 DLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSSKSSKTEKST 180

Query: 181 SENQDKAA 188
           SENQDKAA
Sbjct: 181 SENQDKAA 188


>gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 178

 Score = 23.9 bits (50), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 70  RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127
           R+ S  +  E  LK   G+  V R+    ++ E +  I+SG ++ I+  +R +  TD+
Sbjct: 74  RQSSNVYICEPVLK---GQLPVVRSKRKSKSMEKNNTISSGIVLPISRCLRLMELTDN 128


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1187

 Score = 21.9 bits (45), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 17  GEHIVYPAHGVGTITEIKEQEVAG 40
           G  IV+  HG+G    +   EV+G
Sbjct: 506 GAIIVHAEHGIGRFVRLYSIEVSG 529


>gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 624

 Score = 21.9 bits (45), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 58  KVPVGKAIDIGMRKLSEAHFVERA 81
           K  VGKA+ IG+R +   + V+R+
Sbjct: 124 KFVVGKALKIGLRPIVVVNKVDRS 147


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.129    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,425
Number of Sequences: 1233
Number of extensions: 3596
Number of successful extensions: 7
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 188
length of database: 328,796
effective HSP length: 69
effective length of query: 119
effective length of database: 243,719
effective search space: 29002561
effective search space used: 29002561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)