HHsearch alignment for GI: 254780418 and conserved domain: cd00495
>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L
Probab=99.93 E-value=6.1e-26 Score=182.77 Aligned_cols=91 Identities=37% Similarity=0.645 Sum_probs=86.5
Q ss_pred EEEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCEEEEEEECHHHEEHHCCCCCEEEEEECCCCCCEEEEEEEEECCC
Q ss_conf 99999991687617789999789943899678988556999800221001114662257996167752037861212143
Q gi|254780418|r 6 CKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDYQLDP 85 (191)
Q Consensus 6 ~~L~~~~R~~~gk~~~r~lR~~G~VPaviYG~~~e~~~i~v~~~~l~k~l~~~~~~~~v~~l~i~g~~~~vlikevQ~~p 85 (191)
T Consensus 1 ~~L~a~~R~~~gk~~~r~lR~~G~iPaViYG~~~~~~~i~v~~~~~~k~l~~-~~~~~~~~l~i~g~~~~v~ikevQ~~p 79 (91)
T cd00495 1 LTLKAEKREETGKGASRRLRRAGKVPAVIYGKGKEPISISVDEKELEKLLRK-EGRSTLIELNIDGKKENVLIKDVQRHP 79 (91)
T ss_pred CEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHC-CCCCEEEEEECCCEEEEEEEEEEEECC
T ss_conf 9899999055686779999986995499975899788999949999999854-688489999608808999999999557
Q ss_pred CCCCEEEEEEEE
Q ss_conf 268465448999
Q gi|254780418|r 86 VSDILIHADFLQ 97 (191)
Q Consensus 86 ~~~~i~HvDF~~ 97 (191)
T Consensus 80 v~~~i~HvDF~~ 91 (91)
T cd00495 80 VKDKILHVDFLR 91 (91)
T ss_pred CCCCEEEEECCC
T ss_conf 889788886159