PSIBLAST alignment of GI: 254780418 and protein with PDB id: 2j01
gi|116668257|pdb|2J01|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 206
>gi|116668318|pdb|2J03|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii. Length = 206
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 7/183 (3%)
Query: 5 ECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTI 64
E +L A R+ + LR+ G++P ++Y N + + + + K + I
Sbjct: 2 EYRLKAYYREGEKPSA---LRRAGKLPGVMY-NRHLNRKVYVDLVEFDKVFRQASIHHVI 57
Query: 65 LTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQG 124
+ + + + + LD H DF V V ++VP+RF+ G++ G
Sbjct: 58 VLELPDGQSLPTLVRQVNLDKRRRRPEHVDFF-VLSDEPVEMYVPLRFVGTPA--GVRAG 114
Query: 125 GKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNITIATI 184
G L + ++ + NIP+ I VD++ L+IGDS+H D++LP TIA +
Sbjct: 115 GVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAV 174
Query: 185 VAP 187
V P
Sbjct: 175 VPP 177