PSIBLAST alignment of GI: 254780418 and protein with PDB id: 2j01

gi|116668257|pdb|2J01|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 206
>gi|116668318|pdb|2J03|Z Chain Z, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii. Length = 206
 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 7/183 (3%)

Query: 5   ECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTI 64
           E +L A  R+     +   LR+ G++P ++Y N    + + +   +  K     +    I
Sbjct: 2   EYRLKAYYREGEKPSA---LRRAGKLPGVMY-NRHLNRKVYVDLVEFDKVFRQASIHHVI 57

Query: 65  LTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQG 124
           +      + +  + +   LD       H DF  V     V ++VP+RF+      G++ G
Sbjct: 58  VLELPDGQSLPTLVRQVNLDKRRRRPEHVDFF-VLSDEPVEMYVPLRFVGTPA--GVRAG 114

Query: 125 GKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNITIATI 184
           G L  +  ++ +     NIP+ I VD++ L+IGDS+H  D++LP           TIA +
Sbjct: 115 GVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAV 174

Query: 185 VAP 187
           V P
Sbjct: 175 VPP 177