RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780418|ref|YP_003064831.1| 50S ribosomal protein
L25/general stress protein Ctc [Candidatus Liberibacter asiaticus str.
psy62]
(191 letters)
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein;
NMR {Escherichia coli} (A:)
Length = 94
Score = 107 bits (270), Expect = 8e-25
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 7 KLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILT 66
++A +R + GKG++R LR + PAIIYG P I L + F + +LT
Sbjct: 3 TINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLT 62
Query: 67 LDIGKELVHVIPKDYQLDPVSDILIHADFLQV 98
+ + + + V +D Q P L H DF++
Sbjct: 63 IVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA 94
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal
subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} (S:1-91)
Length = 91
Score = 100 bits (250), Expect = 2e-22
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Query: 12 MRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGK 71
M + + I A+ Y + AL K + ++ G
Sbjct: 1 MELTAKPRTPKQKLDESMIAAVAYNK-ENNVSFALDRKAFDRAFRQQSTTGLFDITVEGG 59
Query: 72 ELVHVIPKDYQLDPVSDILIHADFLQVSEG 101
E + K Q+D IH DF V+ G
Sbjct: 60 ETFPALVKAVQMDKRKRAPIHVDFYMVTYG 89
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} (A:94-206)
Length = 113
Score = 98.3 bits (245), Expect = 6e-22
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHME 163
V ++VP+RF+ G++ GG L + ++ + NIP+ I VD++ L+IGDS+H
Sbjct: 3 VEMYVPLRFVGT--PAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHAS 60
Query: 164 DIRLPEKTSSMSQLNITIATIVAP 187
D++LP TIA +V P
Sbjct: 61 DLKLPPGVELAVSPEETIAAVVPP 84
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal
subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} (S:92-237)
Length = 146
Score = 97.9 bits (244), Expect = 7e-22
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPA-NNIPDSITVDLNDLKIGDSIHM 162
V V VPV S G QGG +++V H + ++ P IP + VD+ + IGD I
Sbjct: 1 VEVSVPVHTTGR--SQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITA 58
Query: 163 EDIRLPEKTSSMSQLNITIATIVAP 187
DI+LPE + + +T+ +++ P
Sbjct: 59 GDIKLPEGCTLAADPELTVVSVLPP 83
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} (A:1-93)
Length = 93
Score = 95.9 bits (239), Expect = 3e-21
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 5 ECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTI 64
E +L A R+ + LR+ G++P ++Y + + + + K + I
Sbjct: 2 EYRLKAYYREGEKPSA---LRRAGKLPGLMYNR-HLNRKVYVDLVEFDKVFRQASIHHVI 57
Query: 65 LTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSE 100
+ + + + + LD H DF +S+
Sbjct: 58 VLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSD 93
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens} (A:)
Length = 110
Score = 28.4 bits (62), Expect = 0.61
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 101 GSTVTVHVPVRFINENKSPGIKQGGKLNVVCH 132
GS+ + F+ +++G + C
Sbjct: 1 GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCK 32
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione,
transferase, PSI, MCSG, structural genomics; 2.40A
{Pseudomonas syringae PV} (A:1-82,A:219-310)
Length = 174
Score = 27.9 bits (62), Expect = 1.0
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 72 ELVHVIPKDYQLDPVSDILIHADFLQVS------EGSTVTVHVP 109
+ V + DY ++ V L ++ V VH P
Sbjct: 122 DKVAIAAVDYGVEAVEGELXFTGREELILRREDNRAGVVHVHFP 165
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR
complex, beta trefoil, IG domain, growth factor/growth
factor receptor complex; 3.20A {Homo sapiens} (B:1-219)
Length = 219
Score = 27.0 bits (57), Expect = 1.5
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCH 132
VP + + G + + C
Sbjct: 2 GRAAEVPGPEPGQQEQLVFGSGDAVELSCP 31
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} (A:179-363)
Length = 185
Score = 26.9 bits (58), Expect = 1.8
Identities = 8/89 (8%), Positives = 25/89 (28%), Gaps = 10/89 (11%)
Query: 96 LQVSEGSTVTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPD-SITVDLNDL 154
+ EG V P+ F E + + +++ + + ++
Sbjct: 8 VYKKEGEQVEFSFPLAFTVEKLTGSGE---------LWWQAERASSSKSWITFDLKNKEV 58
Query: 155 KIGDSIHMEDIRLPEKTSSMSQLNITIAT 183
+ +++ +K L +
Sbjct: 59 SVKRVTQDPKLQMGKKLPLHLTLPQALPQ 87
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} (A:1-106)
Length = 106
Score = 26.8 bits (58), Expect = 1.9
Identities = 7/77 (9%), Positives = 21/77 (27%), Gaps = 7/77 (9%)
Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHME 163
+ + P +K V L C ++ + + + + +
Sbjct: 2 HEGVHRKPSLLAHPGPLVKSEE-------TVILQCWSDVMFEHFLLHREGMFNDTLRLIG 54
Query: 164 DIRLPEKTSSMSQLNIT 180
+ ++ S +T
Sbjct: 55 EHHDGVSKANFSISRMT 71
>1im9_D Killer cell immunoglobulin-like receptor 2DL1;
protein-protein complex, immunoglobulin domain,
antiparallel beta sheet, alpha helix, immune system;
2.80A {Homo sapiens} (D:1-106)
Length = 106
Score = 26.8 bits (58), Expect = 1.9
Identities = 7/77 (9%), Positives = 21/77 (27%), Gaps = 7/77 (9%)
Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHME 163
+ + P +K V L C ++ + + + + +
Sbjct: 2 HEGVHRKPSLLAHPGPLVKSEE-------TVILQCWSDVMFEHFLLHREGMFNDTLRLIG 54
Query: 164 DIRLPEKTSSMSQLNIT 180
+ ++ S +T
Sbjct: 55 EHHDGVSKANFSISRMT 71
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune
system; 2.10A {Homo sapiens} (A:1-104)
Length = 104
Score = 26.7 bits (58), Expect = 2.4
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 7/78 (8%)
Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHM 162
P+ FI+ SP I G V + C A + + I
Sbjct: 2 AQEGDFPMPFISAKSSPVIPLDGS-------VKIQCQAIREAYLTQLMIIKNSTYREIGR 54
Query: 163 EDIRLPEKTSSMSQLNIT 180
E ++
Sbjct: 55 RLKFWNETDPEFVIDHMD 72
>2dl9_A Leucine-rich repeat-containing protein 4; IG-like domain,
brain tumor associated protein LRRC4, structural
genomics, NPPSFA; NMR {Homo sapiens} (A:)
Length = 103
Score = 25.8 bits (56), Expect = 4.1
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 104 VTVHVPVRFINENKSPGIKQGGKLNVVCH 132
+ ++ + I +G + C
Sbjct: 2 SSGSSGPFIMDAPRDLNISEGRMAELKCR 30
>1gr0_A MYO-inositol-1-phosphate synthase; oxidoreductase, PSI,
protein structure initiative, TB structural genomics
consortium, TB, TBSGC; HET: NAD; 1.95A {Mycobacterium
tuberculosis} (A:202-312)
Length = 111
Score = 25.5 bits (56), Expect = 4.6
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 37 NMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDY 81
NM + + L +K ISK +T+ L + + VH+ P D+
Sbjct: 37 NMLERE--RLESKKISK----TQAVTSNLKREFKTKDVHIGPSDH 75
>2o8s_A AGR_C_984P; all alpha-helical protein, structural
genomics, PSI-2, protein structure initiative; 2.40A
{Agrobacterium tumefaciens str} (A:69-192)
Length = 124
Score = 25.1 bits (55), Expect = 6.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 45 ALSAKDISKRLYSKNFMTTILTLDI 69
AL A + Y+K F+ +LT
Sbjct: 43 ALKAHGLEDXAYAKAFIRKVLTEGA 67
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation
protein 1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens} (A:110-218)
Length = 109
Score = 24.8 bits (53), Expect = 7.4
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCH 132
++ E S + G L + C
Sbjct: 3 DGVSESKLQICVEPTSQKLMPGSTLVLQCV 32
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens} (A:)
Length = 108
Score = 24.8 bits (53), Expect = 7.4
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCH 132
TV V ++ G + V C
Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCT 33
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural
genomics, PSI, protein structure initiative; 1.50A
{Agrobacterium tumefaciens str} (A:12-61)
Length = 50
Score = 24.8 bits (54), Expect = 7.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 133 EVSLLCPANNIPDSITVD 150
E+S++C + IP + VD
Sbjct: 31 ELSIVCLIDRIPQDVRVD 48
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation,
oxidoreductase, heparin binding, heparin-binding,
oxidative stress, antioxidant; 1.70A {Homo sapiens} (A:)
Length = 222
Score = 24.7 bits (53), Expect = 8.2
Identities = 2/27 (7%), Positives = 8/27 (29%)
Query: 95 FLQVSEGSTVTVHVPVRFINENKSPGI 121
F Q++ + + + +
Sbjct: 66 FRQLAPRAKLDAFFALEGFPTEPNSSS 92
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich,
structural genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
(A:)
Length = 100
Score = 24.8 bits (53), Expect = 8.5
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCH 132
+ P + + + G + C
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCK 31
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown
function, protein structure initiative, PSI-2; 2.51A
{Corynebacterium diphtheriae NCTC13129} (A:1-344)
Length = 344
Score = 24.6 bits (54), Expect = 8.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 139 PANNIPDSITVDLNDLKIGDSIHME 163
P N ++ TVDLND + D H+
Sbjct: 223 PVNLAYEAATVDLNDANVIDHFHLA 247
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming
nucleotide, nucleotidyltransferase superfamily; HET:
CTP; 1.80A {Archaeoglobus fulgidus}
(A:256-337,A:383-437)
Length = 137
Score = 24.5 bits (53), Expect = 9.1
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 13/50 (26%)
Query: 41 PKPIALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDYQLDPVSDIL 90
P+ + + + K + + T + + K D V D L
Sbjct: 2 KHPLEIEPERLRKIVEERG--TAVFAVKFRKP-----------DIVDDNL 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific
LRR-IG containing, ligand binding protein, membrane
protein; HET: NAG MAN; 2.70A {Homo sapiens} (A:376-477)
Length = 102
Score = 24.4 bits (52), Expect = 9.9
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 7/78 (8%)
Query: 103 TVTVHVPVRFINENKSPGIKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHM 162
T + + + +G H V +C A+ P + L+ K S
Sbjct: 4 YFTCRRARIRDRKAQQVFVDEG-------HTVQFVCRADGDPPPAILWLSPRKHLVSAKS 56
Query: 163 EDIRLPEKTSSMSQLNIT 180
++
Sbjct: 57 NGRLTVFPDGTLEVRYAQ 74
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,364,501
Number of extensions: 58474
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 30
Length of query: 191
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 107
Effective length of database: 2,116,429
Effective search space: 226457903
Effective search space used: 226457903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)