RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780418|ref|YP_003064831.1| 50S ribosomal protein L25/general stress protein Ctc [Candidatus Liberibacter asiaticus str. psy62] (191 letters) >d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein CTC) {Thermus thermophilus [TaxId: 274]} Length = 185 Score = 124 bits (312), Expect = 4e-30 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 7/183 (3%) Query: 5 ECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTI 64 E +L A R+ + LR+ G++P ++Y + + + + K + I Sbjct: 2 EYRLKAYYREGEKPSA---LRRAGKLPGLMYNR-HLNRKVYVDLVEFDKVFRQASIHHVI 57 Query: 65 LTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQG 124 + + + + + LD H DF +S+ V ++VP+RF+ G++ G Sbjct: 58 VLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSD-EPVEMYVPLRFVGTP--AGVRAG 114 Query: 125 GKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNITIATI 184 G L + ++ + NIP+ I VD++ L+IGDS+H D++LP TIA + Sbjct: 115 GVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAV 174 Query: 185 VAP 187 V P Sbjct: 175 VPP 177 >d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress protein CTC) {Deinococcus radiodurans [TaxId: 1299]} Length = 175 Score = 115 bits (290), Expect = 2e-27 Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 4/174 (2%) Query: 15 KVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGKELV 74 + + I A+ Y + AL K + ++ G E Sbjct: 4 TAKPRTPKQKLDESMIAAVAYNKE-NNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETF 62 Query: 75 HVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQGGKLNVVCHEV 134 + K Q+D IH DF V+ G V V VPV +S G QGG +++V H + Sbjct: 63 PALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTG--RSQGEVQGGLVDIVVHNL 120 Query: 135 SLLCPA-NNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNITIATIVAP 187 ++ P IP + VD+ + IGD I DI+LPE + + +T+ +++ P Sbjct: 121 QIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPP 174 >d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]} Length = 94 Score = 95.8 bits (238), Expect = 2e-21 Identities = 28/91 (30%), Positives = 45/91 (49%) Query: 7 KLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILT 66 ++A +R + GKG++R LR + PAIIYG P I L + F + +LT Sbjct: 3 TINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLT 62 Query: 67 LDIGKELVHVIPKDYQLDPVSDILIHADFLQ 97 + + + + V +D Q P L H DF++ Sbjct: 63 IVVDGKEIKVKAQDVQRHPYKPKLQHIDFVR 93 >d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 111 Score = 27.4 bits (61), Expect = 0.95 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Query: 37 NMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDY 81 NM + + + SK++ +T+ L + + VH+ P D+ Sbjct: 38 NMLERERLE------SKKISKTQAVTSNLKREFKTKDVHIGPSDH 76 >d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p {Agrobacterium tumefaciens [TaxId: 358]} Length = 225 Score = 27.1 bits (60), Expect = 0.99 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 38 MSDPK--PIALSAKDISKRLYSKNFMTTILTLDI 69 M+D + AL A + Y+K F+ +LT Sbjct: 49 MADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGA 82 >d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]} Length = 60 Score = 25.5 bits (56), Expect = 3.4 Identities = 7/18 (38%), Positives = 12/18 (66%) Query: 133 EVSLLCPANNIPDSITVD 150 E+S++C + IP + VD Sbjct: 42 ELSIVCLIDRIPQDVRVD 59 >d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]} Length = 409 Score = 24.5 bits (53), Expect = 5.4 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 71 KELVHVIPKDYQLDPVSDILIHADFL--QVSEGSTVTVHVPVRFINENKSPGIKQGG 125 +V V P +D + + + F+ + S TVH + ++ K G+ Sbjct: 124 AVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPTVHNSTTWHSDYKVKGLCDSN 180 >d1ykwa2 d.58.9.1 (A:4-145) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} Length = 142 Score = 24.1 bits (52), Expect = 8.5 Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 8/40 (20%) Query: 139 PANNIPDSITVDLN--------DLKIGDSIHMEDIRLPEK 170 P N I L + + DI P+ Sbjct: 98 PHCNFGPKIPNLLTAVCGEGTYFTPGVPVVKLMDIHFPDT 137 >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85 Score = 23.8 bits (50), Expect = 9.3 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 12/80 (15%) Query: 85 PVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQGGKLN------------VVCH 132 P + + + ++ V + +VT+ E+ S G L Sbjct: 3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNND 62 Query: 133 EVSLLCPANNIPDSITVDLN 152 C S V L Sbjct: 63 SGEYTCQTGQTSLSDPVHLT 82 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.135 0.379 Gapped Lambda K H 0.267 0.0667 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 677,859 Number of extensions: 30383 Number of successful extensions: 92 Number of sequences better than 10.0: 1 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 17 Length of query: 191 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 111 Effective length of database: 1,309,196 Effective search space: 145320756 Effective search space used: 145320756 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.2 bits)