RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780418|ref|YP_003064831.1| 50S ribosomal protein
L25/general stress protein Ctc [Candidatus Liberibacter asiaticus str.
psy62]
(191 letters)
>d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein
CTC) {Thermus thermophilus [TaxId: 274]}
Length = 185
Score = 124 bits (312), Expect = 4e-30
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 5 ECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTI 64
E +L A R+ + LR+ G++P ++Y + + + + K + I
Sbjct: 2 EYRLKAYYREGEKPSA---LRRAGKLPGLMYNR-HLNRKVYVDLVEFDKVFRQASIHHVI 57
Query: 65 LTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQG 124
+ + + + + LD H DF +S+ V ++VP+RF+ G++ G
Sbjct: 58 VLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSD-EPVEMYVPLRFVGTP--AGVRAG 114
Query: 125 GKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNITIATI 184
G L + ++ + NIP+ I VD++ L+IGDS+H D++LP TIA +
Sbjct: 115 GVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAV 174
Query: 185 VAP 187
V P
Sbjct: 175 VPP 177
>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress
protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
Length = 175
Score = 115 bits (290), Expect = 2e-27
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 4/174 (2%)
Query: 15 KVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGKELV 74
+ + I A+ Y + AL K + ++ G E
Sbjct: 4 TAKPRTPKQKLDESMIAAVAYNKE-NNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETF 62
Query: 75 HVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQGGKLNVVCHEV 134
+ K Q+D IH DF V+ G V V VPV +S G QGG +++V H +
Sbjct: 63 PALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTG--RSQGEVQGGLVDIVVHNL 120
Query: 135 SLLCPA-NNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNITIATIVAP 187
++ P IP + VD+ + IGD I DI+LPE + + +T+ +++ P
Sbjct: 121 QIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPP 174
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli
[TaxId: 562]}
Length = 94
Score = 95.8 bits (238), Expect = 2e-21
Identities = 28/91 (30%), Positives = 45/91 (49%)
Query: 7 KLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNFMTTILT 66
++A +R + GKG++R LR + PAIIYG P I L + F + +LT
Sbjct: 3 TINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLT 62
Query: 67 LDIGKELVHVIPKDYQLDPVSDILIHADFLQ 97
+ + + + V +D Q P L H DF++
Sbjct: 63 IVVDGKEIKVKAQDVQRHPYKPKLQHIDFVR 93
>d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 111
Score = 27.4 bits (61), Expect = 0.95
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 37 NMSDPKPIALSAKDISKRLYSKNFMTTILTLDIGKELVHVIPKDY 81
NM + + + SK++ +T+ L + + VH+ P D+
Sbjct: 38 NMLERERLE------SKKISKTQAVTSNLKREFKTKDVHIGPSDH 76
>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 225
Score = 27.1 bits (60), Expect = 0.99
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 38 MSDPK--PIALSAKDISKRLYSKNFMTTILTLDI 69
M+D + AL A + Y+K F+ +LT
Sbjct: 49 MADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGA 82
>d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 60
Score = 25.5 bits (56), Expect = 3.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 133 EVSLLCPANNIPDSITVD 150
E+S++C + IP + VD
Sbjct: 42 ELSIVCLIDRIPQDVRVD 59
>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
indiana virus [TaxId: 11277]}
Length = 409
Score = 24.5 bits (53), Expect = 5.4
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 71 KELVHVIPKDYQLDPVSDILIHADFL--QVSEGSTVTVHVPVRFINENKSPGIKQGG 125
+V V P +D + + + F+ + S TVH + ++ K G+
Sbjct: 124 AVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPTVHNSTTWHSDYKVKGLCDSN 180
>d1ykwa2 d.58.9.1 (A:4-145) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
Length = 142
Score = 24.1 bits (52), Expect = 8.5
Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 8/40 (20%)
Query: 139 PANNIPDSITVDLN--------DLKIGDSIHMEDIRLPEK 170
P N I L + + DI P+
Sbjct: 98 PHCNFGPKIPNLLTAVCGEGTYFTPGVPVVKLMDIHFPDT 137
>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human
(Homo sapiens), IIb [TaxId: 9606]}
Length = 85
Score = 23.8 bits (50), Expect = 9.3
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 12/80 (15%)
Query: 85 PVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPGIKQGGKLN------------VVCH 132
P + + + ++ V + +VT+ E+ S G L
Sbjct: 3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNND 62
Query: 133 EVSLLCPANNIPDSITVDLN 152
C S V L
Sbjct: 63 SGEYTCQTGQTSLSDPVHLT 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 677,859
Number of extensions: 30383
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 17
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)