BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780418|ref|YP_003064831.1| 50S ribosomal protein L25/general stress protein Ctc [Candidatus Liberibacter asiaticus str. psy62] (191 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780418|ref|YP_003064831.1| 50S ribosomal protein L25/general stress protein Ctc [Candidatus Liberibacter asiaticus str. psy62] Length = 191 Score = 387 bits (994), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/191 (100%), Positives = 191/191 (100%) Query: 1 MDQKECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNF 60 MDQKECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNF Sbjct: 1 MDQKECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNF 60 Query: 61 MTTILTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPG 120 MTTILTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPG Sbjct: 61 MTTILTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPG 120 Query: 121 IKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNIT 180 IKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNIT Sbjct: 121 IKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNIT 180 Query: 181 IATIVAPISGS 191 IATIVAPISGS Sbjct: 181 IATIVAPISGS 191 >gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str. psy62] Length = 172 Score = 23.1 bits (48), Expect = 3.0, Method: Compositional matrix adjust. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 72 ELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKS----PGIKQGGKL 127 LV + +D + +SD+ + + S+ + + V F N+N G+ + G L Sbjct: 56 RLVKIAIRDTSIRGISDLFVGQSLIVYSDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVL 115 Query: 128 N 128 N Sbjct: 116 N 116 >gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] Length = 781 Score = 23.1 bits (48), Expect = 3.1, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 7/60 (11%) Query: 36 GNMSDPKPIALSAKDISKRLYS--KNF--MTTILTLDIGKELVHVIPKDYQLDPVSDILI 91 GN+ +P+ I S++ ISK +S + F + T + D K +V + +Y +D S + + Sbjct: 311 GNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDI---EYLIDQGSPLYV 367 >gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 22.7 bits (47), Expect = 3.8, Method: Compositional matrix adjust. Identities = 8/31 (25%), Positives = 18/31 (58%) Query: 11 VMRDKVGKGSARLLRKNGQIPAIIYGNMSDP 41 + R V G+ R++ + G + ++Y +S+P Sbjct: 360 IYRRMVSSGAVRIVEEVGTLADMVYSLLSEP 390 >gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 22.7 bits (47), Expect = 4.7, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%) Query: 26 KNGQIPAIIYGN-------MSDPKPIALSAKDISKRLYSKNFMTT 63 K +PAI YG ++ +AL+ + KR Y ++FM T Sbjct: 333 KGMTMPAISYGGSSILGICITMGYLLALTCRRPEKRAYEEDFMHT 377 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.379 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 122,557 Number of Sequences: 1233 Number of extensions: 5204 Number of successful extensions: 13 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 10 length of query: 191 length of database: 328,796 effective HSP length: 69 effective length of query: 122 effective length of database: 243,719 effective search space: 29733718 effective search space used: 29733718 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 36 (18.5 bits)