BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780418|ref|YP_003064831.1| 50S ribosomal protein
L25/general stress protein Ctc [Candidatus Liberibacter asiaticus str.
psy62]
         (191 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780418|ref|YP_003064831.1| 50S ribosomal protein L25/general stress protein Ctc [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 191

 Score =  387 bits (994), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MDQKECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNF 60
           MDQKECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNF
Sbjct: 1   MDQKECKLSAVMRDKVGKGSARLLRKNGQIPAIIYGNMSDPKPIALSAKDISKRLYSKNF 60

Query: 61  MTTILTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPG 120
           MTTILTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPG
Sbjct: 61  MTTILTLDIGKELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKSPG 120

Query: 121 IKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNIT 180
           IKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNIT
Sbjct: 121 IKQGGKLNVVCHEVSLLCPANNIPDSITVDLNDLKIGDSIHMEDIRLPEKTSSMSQLNIT 180

Query: 181 IATIVAPISGS 191
           IATIVAPISGS
Sbjct: 181 IATIVAPISGS 191


>gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 172

 Score = 23.1 bits (48), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 72  ELVHVIPKDYQLDPVSDILIHADFLQVSEGSTVTVHVPVRFINENKS----PGIKQGGKL 127
            LV +  +D  +  +SD+ +    +  S+   +   + V F N+N       G+ + G L
Sbjct: 56  RLVKIAIRDTSIRGISDLFVGQSLIVYSDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVL 115

Query: 128 N 128
           N
Sbjct: 116 N 116


>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 23.1 bits (48), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 36  GNMSDPKPIALSAKDISKRLYS--KNF--MTTILTLDIGKELVHVIPKDYQLDPVSDILI 91
           GN+ +P+ I  S++ ISK  +S  + F  + T +  D  K +V +   +Y +D  S + +
Sbjct: 311 GNLYNPQEIKESSEKISKYFFSGERPFVRVKTRINRDFAKRIVDI---EYLIDQGSPLYV 367


>gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 440

 Score = 22.7 bits (47), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 11  VMRDKVGKGSARLLRKNGQIPAIIYGNMSDP 41
           + R  V  G+ R++ + G +  ++Y  +S+P
Sbjct: 360 IYRRMVSSGAVRIVEEVGTLADMVYSLLSEP 390


>gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 385

 Score = 22.7 bits (47), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 26  KNGQIPAIIYGN-------MSDPKPIALSAKDISKRLYSKNFMTT 63
           K   +PAI YG        ++    +AL+ +   KR Y ++FM T
Sbjct: 333 KGMTMPAISYGGSSILGICITMGYLLALTCRRPEKRAYEEDFMHT 377


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,557
Number of Sequences: 1233
Number of extensions: 5204
Number of successful extensions: 13
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 10
length of query: 191
length of database: 328,796
effective HSP length: 69
effective length of query: 122
effective length of database: 243,719
effective search space: 29733718
effective search space used: 29733718
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)