HHsearch alignment for GI: 254780419 and conserved domain: PRK00484
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=868.53 Aligned_cols=428 Identities=25% Similarity=0.399 Sum_probs=349.6
Q ss_pred CCCCHHHCCHHH---------CCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCC---HHHHHHHCCCCCCEEE
Q ss_conf 742042369799---------8988999979800444698799999779825999974881---5789985289885899
Q gi|254780419|r 5 RTHSCGDLGVSD---------VGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDS---ACFEIAKSVRSEWVLC 72 (622)
Q Consensus 5 Rth~cg~l~~~~---------~g~~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~---~~~~~~~~l~~esvv~ 72 (622)
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrv~~~R~~Gk~~F~~lrD~~g~iQ~~~~~~~~~~~~~~~~~~l~~gd~i~ 110 (491)
T PRK00484 31 RTHTSAELQAKYADLEKEELEALIEVSVAGRVMLKRVMGKASFATIQDGSGRIQLYVSKDDVGEEAYEAFKKLDLGDIIG 110 (491)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCEEE
T ss_conf 86669999998751385334679889999878405056981999999699458999966758999999996068666898
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEE-CCCCCCCCHHHHHHHHHH
Q ss_conf 9999997586555887778659999889999502117998645766789878211232000-121111212458999999
Q gi|254780419|r 73 IDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREYPESIRFKYRFLDL-RRDTLHKNIVKRTRIINS 151 (622)
Q Consensus 73 v~G~V~~r~~~~~n~~~~tG~~Ei~~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~LdL-R~~~~~~~l~~Rs~i~~~ 151 (622)
T Consensus 111 v~G~v~~---------t~~Gel~v~~~~~~iLsksl~-plP~k~~g~~d~e~r~r~RyLDLi~n~~~~~~f~~Rs~ii~~ 180 (491)
T PRK00484 111 VEGTLFK---------TKTGELSVKVTELTLLTKSLR-PLPDKFHGLSDQETRYRQRYLDLIVNEESRETFRKRSKIISA 180 (491)
T ss_pred EEEEEEE---------CCCCEEEEECCEEEEECCCCC-CCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7879986---------588516640331799316888-998544455675563113302102799999999999999999
Q ss_pred HHHHHHCCCEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHHHEEEHHHHCCCCCCCCC
Q ss_conf 9875203651462033211246456--64543222221034431123854564433105702331100110377766553
Q gi|254780419|r 152 MRCRMIAENFIECSTPILTASSPEG--ARDFLVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDR 229 (622)
Q Consensus 152 ~R~~l~~~gF~EveTP~L~ksTpeG--ArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G~dryfqiarcFRdEd~R~dR 229 (622)
T Consensus 181 iR~~l~~~gF~EVeTPiL-~~~~gGA~ArpF~t~~n~l~~~~y-L~~SPqLylk~l~vgG~ervfeI~r~FR~E~~~~rH 258 (491)
T PRK00484 181 IRRFLDNRGFLEVETPML-QPIPGGAAARPFITHHNALDIDLY-LRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTRH 258 (491)
T ss_pred HHHHHHHCCEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCEE-ECCCHHHHHHHHHHCCCHHHEEHHHHHHCCCCCCCC
T ss_conf 999998676899867877-666887566765564456685544-206878987778762720222248766257554341
Q ss_pred CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC---------CCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCCC
Q ss_conf 80000356541026899999999999999999998087---------2345773212189887513-6777644476401
Q gi|254780419|r 230 LPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNG---------NTVSNNFLRICYDDAIRRY-GTDKPDLRNPIIM 299 (622)
Q Consensus 230 qp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~---------~~i~~pF~rmtY~eAm~~Y-GsDKPDLR~~lei 299 (622)
T Consensus 259 ~p-EFT~lE~e~af~d~~dvm~l~E~li~~v~~~v~g~~~~~~~~~~idl~~pf~rit~~eai~~~~g~d~~~~~----- 332 (491)
T PRK00484 259 NP-EFTMIEFYQAYADYNDMMDLTEELIRHLAKEVLGTTKITYGGTEIDFGKPFKRLTMVDAIKEYTGVDFTPQD----- 332 (491)
T ss_pred CC-CEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEECCCCCCEECCHHHHHHHHCCCCCCCCC-----
T ss_conf 84-010213677247999999999999999999961995673287763378995022399999997099876556-----
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHC
Q ss_conf 24431017875245666874037847999962787665210356779998764202462355204777533357025532
Q gi|254780419|r 300 HNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMGPVAKHL 379 (622)
Q Consensus 300 ~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~spi~K~l 379 (622)
T Consensus 333 ----------------------------------------~~~~l~~~~~~~g~~------~--~~--~~---------- 352 (491)
T PRK00484 333 ----------------------------------------EEEEARAIAKELGVE------V--EK--SW---------- 352 (491)
T ss_pred ----------------------------------------CHHHHHHHHHHCCCC------C--CC--CC----------
T ss_conf ----------------------------------------789999999986998------7--88--77----------
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECCCCCCCCHHHCCC
Q ss_conf 52789999998188755726998088541100134788999877300355751028896077053545547000211002
Q gi|254780419|r 380 NIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPF 459 (622)
Q Consensus 380 ~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~dee~~r~~s~HHPF 459 (622)
T Consensus 353 --------------------------------~~g~l~~~lfe~--~ve~~l~~PtFV~d~P~-----e-------~sPl 386 (491)
T PRK00484 353 --------------------------------GLGKLINELFEE--FVEPKLIQPTFITDYPV-----E-------ISPL 386 (491)
T ss_pred --------------------------------CHHHHHHHHHHH--HHHHHCCCCEECCCCCC-----C-------CCCC
T ss_conf --------------------------------878999998887--76541146400136722-----1-------5875
Q ss_pred CCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4766430655418877741313677775677212512315699999999985----999899986677899998608497
Q gi|254780419|r 460 TMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNV----GISKEVVENRFGGLYRAFQCGMPP 535 (622)
Q Consensus 460 TaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~~l----gl~~ee~~~~Fg~lL~Al~yG~PP 535 (622)
T Consensus 387 ak~~~~d-------p~--~~erfdL~i~G~Ei~ng~~el~Dp~~Q~~rf~~q~~~k~~gd~ea~~~Dedfl~Al~yG~PP 457 (491)
T PRK00484 387 AKRHRSN-------PG--FTERFELFIGGRELANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFYDEDFLRALEYGMPP 457 (491)
T ss_pred CCCCCCC-------CC--CEEEECEEECCEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCC
T ss_conf 5668889-------67--03675643488997365033179999999999999998648832332409999997779999
Q ss_pred CCCEECCHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 342224689999998373984032137899
Q gi|254780419|r 536 HGGIAAGIDRIVMLLLGAKNVREVSLFPMS 565 (622)
Q Consensus 536 HgG~alGlDRlvmll~g~~sIRdVIaFPKt 565 (622)
T Consensus 458 hgG~GlGiDRLvMlLtg~~sIRdVI~FP~~ 487 (491)
T PRK00484 458 TGGLGIGIDRLVMLLTNSPSIRDVILFPAM 487 (491)
T ss_pred CCEEEEHHHHHHHHHCCCCCHHHCCCCCCC
T ss_conf 852655699999998399957750168888