HHsearch alignment for GI: 254780419 and conserved domain: PRK02983

>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=100.00  E-value=0  Score=919.86  Aligned_cols=443  Identities=22%  Similarity=0.318  Sum_probs=361.5

Q ss_pred             CCCCCHHHCCHHHCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCHHH----HHHHCCCCCCEEEEEEEEEE
Q ss_conf             77420423697998988999979800444698799999779825999974881578----99852898858999999997
Q gi|254780419|r    4 YRTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACF----EIAKSVRSEWVLCIDGLVMS   79 (622)
Q Consensus         4 ~Rth~cg~l~~~~~g~~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~~~~----~~~~~l~~esvv~v~G~V~~   79 (622)
T Consensus       643 ~RTHT~~e~~~~~~G~~VtvaGwV~r~RDhGgl~FidLRD~~G~iQvv~~~d~~g~~~~~~~~~~vdlGDvI~V~G~V~~  722 (1099)
T PRK02983        643 PPSHTVAQALAAPDGEEVSVSGRVLRIRDYGGVLFAQLRDWSGELQVLLDNSRLGQGRLADFTAAVDLGDLIEATGTMGA  722 (1099)
T ss_pred             CCCCCHHHHCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEC
T ss_conf             99741666424799998999987999843788699997418876799997775676899998762577887999858862


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEC-CCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             5865558877786599998899995021179986457667898782112320001-211112124589999999875203
Q gi|254780419|r   80 RSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREYPESIRFKYRFLDLR-RDTLHKNIVKRTRIINSMRCRMIA  158 (622)
Q Consensus        80 r~~~~~n~~~~tG~~Ei~~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~LdLR-~~~~~~~l~~Rs~i~~~~R~~l~~  158 (622)
T Consensus       723 t---------~tGEisV~a~~~~vlsKsL~-PLP~k~~gl~d~E~RlR~RYLDLr~npe~r~~~~~RS~Vi~aiR~~L~~  792 (1099)
T PRK02983        723 S---------RNGTPSLLVTSWRLIGKCLR-PLPDKWKGLTDPEARVRARYLDLAVNPEARDLIRARSAVLRAVRETLVA  792 (1099)
T ss_pred             C---------CCCCEEEEEEEEEEEECCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7---------89845799748998404567-9997677988776755645565158989999999999999999999987


Q ss_pred             CCEEEEECCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHHHEEEHHHHCCCCCCCCCCCCCEEEE
Q ss_conf             6514620332112-464566454322222103443112385456443310570233110011037776655380000356
Q gi|254780419|r  159 ENFIECSTPILTA-SSPEGARDFLVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQL  237 (622)
Q Consensus       159 ~gF~EveTP~L~k-sTpeGArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G~dryfqiarcFRdEd~R~dRqp~EFTql  237 (622)
T Consensus       793 ~GFlEVETPiLq~~~GGA~ARPFlThsna~d~~~Y-LriAPELflKRLmVGGfeRVFEI~RcFRNEglradHnP-EFTmL  870 (1099)
T PRK02983        793 KGFLEVETPILQQIHGGANARPFLTHINAYDLDLY-LRIAPELYLKRLCVGGVERVFELGRAFRNEGVDFSHNP-EFTLL  870 (1099)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE-EECCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCC-CHHHH
T ss_conf             89889557546778887567853010336786614-51480899999986486311343254467999987494-07999


Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             54102689999999999999999999808723457732121898875136777644476401244310178752456668
Q gi|254780419|r  238 DMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMHNVTEHFVHSEFRVFSKI  317 (622)
Q Consensus       238 D~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~rmtY~eAm~~YGsDKPDLR~~lei~dit~~~~~~~f~vf~~~  317 (622)
T Consensus       871 E~Y~Ay~Dyedmm~ltEeLi~~~a~~~~G~~v~------------------~~pd~~~~~~~iDls~~w~~~t~~-----  927 (1099)
T PRK02983        871 EAYQAHADYLVMRDLCRELIQNAAQAANGEPVV------------------MRPGTDGVLEPVDISGEWPVKTVH-----  927 (1099)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEE------------------ECCCCCCCCEEEECCCCCEEEEHH-----
T ss_conf             999984789999999999999999995196578------------------616877887686569995265399-----


Q ss_pred             HHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf             74037847999962787665210356779998764202462355204777533357025532527899999981887557
Q gi|254780419|r  318 LSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGD  397 (622)
Q Consensus       318 ~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~spi~K~l~~~~~~~l~~~~~~~~GD  397 (622)
T Consensus       928 ------------------------eai~e---~~G~--------------di~~~------~~~e~L~~~a~~~gi~---  957 (1099)
T PRK02983        928 ------------------------EAVSE---ALGE--------------EIDAD------TPLETLRRLCDAAGIP---  957 (1099)
T ss_pred             ------------------------HHHHH---HHCC--------------CCCCC------CCHHHHHHHHHHCCCC---
T ss_conf             ------------------------99999---8388--------------78999------9999999999977997---


Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECCCCCCCCHHHCCCCCCCCCHHHHHCCCHHHH
Q ss_conf             26998088541100134788999877300355751028896077053545547000211002476643065541887774
Q gi|254780419|r  398 SCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSI  477 (622)
Q Consensus       398 ~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~dee~~r~~s~HHPFTaP~~~~~~l~~~dp~~v  477 (622)
T Consensus       958 ---------~~~~~~~G~lv~eL~e~--lVE~~l~~PtFV~DfP~------------e~sPLarp~~~d-------p~-- 1005 (1099)
T PRK02983        958 ---------YLTHWDAGAVVLELYEH--LVEDRTTEPTFYTDFPT------------SVSPLTRPHRSD-------PG-- 1005 (1099)
T ss_pred             ---------CCCCCCHHHHHHHHHHH--HCCCCCCCCEEEECCCC------------CCCCCCCCCCCC-------CC--
T ss_conf             ---------78999977999999998--52737667789989972------------239041778999-------68--


Q ss_pred             HHHCCCEEECCEEECCCCEECCCHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCC
Q ss_conf             13136777756772125123156999999999-----8599989998667789999860849734222468999999837
Q gi|254780419|r  478 KAFQYDLVCNGFEIASGGIRNHMSEVMLQAFS-----NVGISKEVVENRFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLG  552 (622)
Q Consensus       478 ~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~-----~lgl~~ee~~~~Fg~lL~Al~yG~PPHgG~alGlDRlvmll~g  552 (622)
T Consensus      1006 lAeRfDLvinG~ELgnGysELnDP~eQR~Rf~eQ~~~~~ggD~Eam~-~DEdFL~ALeYGmPPhGGialGIDRLVMLLTG 1084 (1099)
T PRK02983       1006 VAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAME-LDEDFLQALEYAMPPTGGLGMGVDRLVMLITG 1084 (1099)
T ss_pred             EEEEEEEEECCEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCHHHH-CHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCC
T ss_conf             27877255558997021035169999999999999998679900233-21789998431899736475449999999629


Q ss_pred             CCCCEEEECCCCC
Q ss_conf             3984032137899
Q gi|254780419|r  553 AKNVREVSLFPMS  565 (622)
Q Consensus       553 ~~sIRdVIaFPKt  565 (622)
T Consensus      1085 ~-SIREVIaFPl~ 1096 (1099)
T PRK02983       1085 R-SIRETLPFPLA 1096 (1099)
T ss_pred             C-CHHHHCCCCCC
T ss_conf             9-75987438787