HHsearch alignment for GI: 254780419 and conserved domain: PRK02983
>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=919.86 Aligned_cols=443 Identities=22% Similarity=0.318 Sum_probs=361.5
Q ss_pred CCCCCHHHCCHHHCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCHHH----HHHHCCCCCCEEEEEEEEEE
Q ss_conf 77420423697998988999979800444698799999779825999974881578----99852898858999999997
Q gi|254780419|r 4 YRTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACF----EIAKSVRSEWVLCIDGLVMS 79 (622)
Q Consensus 4 ~Rth~cg~l~~~~~g~~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~~~~----~~~~~l~~esvv~v~G~V~~ 79 (622)
T Consensus 643 ~RTHT~~e~~~~~~G~~VtvaGwV~r~RDhGgl~FidLRD~~G~iQvv~~~d~~g~~~~~~~~~~vdlGDvI~V~G~V~~ 722 (1099)
T PRK02983 643 PPSHTVAQALAAPDGEEVSVSGRVLRIRDYGGVLFAQLRDWSGELQVLLDNSRLGQGRLADFTAAVDLGDLIEATGTMGA 722 (1099)
T ss_pred CCCCCHHHHCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEC
T ss_conf 99741666424799998999987999843788699997418876799997775676899998762577887999858862
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEC-CCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 5865558877786599998899995021179986457667898782112320001-211112124589999999875203
Q gi|254780419|r 80 RSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREYPESIRFKYRFLDLR-RDTLHKNIVKRTRIINSMRCRMIA 158 (622)
Q Consensus 80 r~~~~~n~~~~tG~~Ei~~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~LdLR-~~~~~~~l~~Rs~i~~~~R~~l~~ 158 (622)
T Consensus 723 t---------~tGEisV~a~~~~vlsKsL~-PLP~k~~gl~d~E~RlR~RYLDLr~npe~r~~~~~RS~Vi~aiR~~L~~ 792 (1099)
T PRK02983 723 S---------RNGTPSLLVTSWRLIGKCLR-PLPDKWKGLTDPEARVRARYLDLAVNPEARDLIRARSAVLRAVRETLVA 792 (1099)
T ss_pred C---------CCCCEEEEEEEEEEEECCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7---------89845799748998404567-9997677988776755645565158989999999999999999999987
Q ss_pred CCEEEEECCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHHHEEEHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 6514620332112-464566454322222103443112385456443310570233110011037776655380000356
Q gi|254780419|r 159 ENFIECSTPILTA-SSPEGARDFLVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQL 237 (622)
Q Consensus 159 ~gF~EveTP~L~k-sTpeGArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G~dryfqiarcFRdEd~R~dRqp~EFTql 237 (622)
T Consensus 793 ~GFlEVETPiLq~~~GGA~ARPFlThsna~d~~~Y-LriAPELflKRLmVGGfeRVFEI~RcFRNEglradHnP-EFTmL 870 (1099)
T PRK02983 793 KGFLEVETPILQQIHGGANARPFLTHINAYDLDLY-LRIAPELYLKRLCVGGVERVFELGRAFRNEGVDFSHNP-EFTLL 870 (1099)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE-EECCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCC-CHHHH
T ss_conf 89889557546778887567853010336786614-51480899999986486311343254467999987494-07999
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 54102689999999999999999999808723457732121898875136777644476401244310178752456668
Q gi|254780419|r 238 DMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMHNVTEHFVHSEFRVFSKI 317 (622)
Q Consensus 238 D~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~rmtY~eAm~~YGsDKPDLR~~lei~dit~~~~~~~f~vf~~~ 317 (622)
T Consensus 871 E~Y~Ay~Dyedmm~ltEeLi~~~a~~~~G~~v~------------------~~pd~~~~~~~iDls~~w~~~t~~----- 927 (1099)
T PRK02983 871 EAYQAHADYLVMRDLCRELIQNAAQAANGEPVV------------------MRPGTDGVLEPVDISGEWPVKTVH----- 927 (1099)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEE------------------ECCCCCCCCEEEECCCCCEEEEHH-----
T ss_conf 999984789999999999999999995196578------------------616877887686569995265399-----
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf 74037847999962787665210356779998764202462355204777533357025532527899999981887557
Q gi|254780419|r 318 LSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGD 397 (622)
Q Consensus 318 ~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~spi~K~l~~~~~~~l~~~~~~~~GD 397 (622)
T Consensus 928 ------------------------eai~e---~~G~--------------di~~~------~~~e~L~~~a~~~gi~--- 957 (1099)
T PRK02983 928 ------------------------EAVSE---ALGE--------------EIDAD------TPLETLRRLCDAAGIP--- 957 (1099)
T ss_pred ------------------------HHHHH---HHCC--------------CCCCC------CCHHHHHHHHHHCCCC---
T ss_conf ------------------------99999---8388--------------78999------9999999999977997---
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECCCCCCCCHHHCCCCCCCCCHHHHHCCCHHHH
Q ss_conf 26998088541100134788999877300355751028896077053545547000211002476643065541887774
Q gi|254780419|r 398 SCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSI 477 (622)
Q Consensus 398 ~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~dee~~r~~s~HHPFTaP~~~~~~l~~~dp~~v 477 (622)
T Consensus 958 ---------~~~~~~~G~lv~eL~e~--lVE~~l~~PtFV~DfP~------------e~sPLarp~~~d-------p~-- 1005 (1099)
T PRK02983 958 ---------YLTHWDAGAVVLELYEH--LVEDRTTEPTFYTDFPT------------SVSPLTRPHRSD-------PG-- 1005 (1099)
T ss_pred ---------CCCCCCHHHHHHHHHHH--HCCCCCCCCEEEECCCC------------CCCCCCCCCCCC-------CC--
T ss_conf ---------78999977999999998--52737667789989972------------239041778999-------68--
Q ss_pred HHHCCCEEECCEEECCCCEECCCHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCC
Q ss_conf 13136777756772125123156999999999-----8599989998667789999860849734222468999999837
Q gi|254780419|r 478 KAFQYDLVCNGFEIASGGIRNHMSEVMLQAFS-----NVGISKEVVENRFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLG 552 (622)
Q Consensus 478 ~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~-----~lgl~~ee~~~~Fg~lL~Al~yG~PPHgG~alGlDRlvmll~g 552 (622)
T Consensus 1006 lAeRfDLvinG~ELgnGysELnDP~eQR~Rf~eQ~~~~~ggD~Eam~-~DEdFL~ALeYGmPPhGGialGIDRLVMLLTG 1084 (1099)
T PRK02983 1006 VAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAME-LDEDFLQALEYAMPPTGGLGMGVDRLVMLITG 1084 (1099)
T ss_pred EEEEEEEEECCEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCHHHH-CHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCC
T ss_conf 27877255558997021035169999999999999998679900233-21789998431899736475449999999629
Q ss_pred CCCCEEEECCCCC
Q ss_conf 3984032137899
Q gi|254780419|r 553 AKNVREVSLFPMS 565 (622)
Q Consensus 553 ~~sIRdVIaFPKt 565 (622)
T Consensus 1085 ~-SIREVIaFPl~ 1096 (1099)
T PRK02983 1085 R-SIRETLPFPLA 1096 (1099)
T ss_pred C-CHHHHCCCCCC
T ss_conf 9-75987438787