HHsearch alignment for GI: 254780419 and conserved domain: PRK05431

>PRK05431 seryl-tRNA synthetase; Provisional.
Probab=97.07  E-value=0.0041  Score=41.72  Aligned_cols=123  Identities=19%  Similarity=0.325  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCC----------------CCCCCCCCCHHH-HHHCCCCHHHHHH
Q ss_conf             245899999998752036514620332112464-5664----------------543222221034-4311238545644
Q gi|254780419|r  142 IVKRTRIINSMRCRMIAENFIECSTPILTASSP-EGAR----------------DFLVPSRVNQGS-FYALPQAPQQYKQ  203 (622)
Q Consensus       142 l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTp-eGAr----------------dFlVPsR~~~g~-fYALpQSPQlyKQ  203 (622)
T Consensus       170 A~LerALi~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtGqlPkfe~~~Y~i~~~dl~Li~TAEvpL~~~~~--------~e  241 (422)
T PRK05431        170 ARLERALIQFMLDLHTEEGYTEVIPPYLVNEESMYGTGQLPKFEEDLFKIEDDDLYLIPTAEVPLTNLHR--------DE  241 (422)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHH--------CC
T ss_conf             9999999999999999879979967376367887445379744877541058871760565321233440--------11


Q ss_pred             HHHCCCH-HHHEEEHHHHCCCCCCC--C-----CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             3310570-23311001103777665--5-----38000035654102689999999999999999999808723457732
Q gi|254780419|r  204 LLMASGF-DRYFQIAPCFRDEDPRS--D-----RLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFL  275 (622)
Q Consensus       204 lLmv~G~-dryfqiarcFRdEd~R~--d-----Rqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~  275 (622)
T Consensus       242 il~~~~LPik~~~~S~CFR~EAGs~GkdtrGl~RvH-QF~KVE~-f~~~~pe~S~~~~e~~~~~~e-~i~~--~L~lpyr  316 (422)
T PRK05431        242 ILDEEELPIKYTAYSPCFRSEAGSAGRDTRGLIRQH-QFDKVEL-VKFTKPEDSYAELEELTGNAE-EILQ--KLELPYR  316 (422)
T ss_pred             CCCHHHCCHHHEEECCHHHHCCCCCCCCCCCCEEEE-EECEEEE-EEECCHHHHHHHHHHHHHHHH-HHHH--HCCCCCC
T ss_conf             336543984452788365303133675567612443-0000343-353586779999999999999-9998--7598502


Q ss_pred             CC
Q ss_conf             12
Q gi|254780419|r  276 RI  277 (622)
Q Consensus       276 rm  277 (622)
T Consensus       317 vv  318 (422)
T PRK05431        317 VV  318 (422)
T ss_pred             CC
T ss_conf             35