HHsearch alignment for GI: 254780419 and conserved domain: PRK05431
>PRK05431 seryl-tRNA synthetase; Provisional.
Probab=97.07 E-value=0.0041 Score=41.72 Aligned_cols=123 Identities=19% Similarity=0.325 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCC----------------CCCCCCCCCHHH-HHHCCCCHHHHHH
Q ss_conf 245899999998752036514620332112464-5664----------------543222221034-4311238545644
Q gi|254780419|r 142 IVKRTRIINSMRCRMIAENFIECSTPILTASSP-EGAR----------------DFLVPSRVNQGS-FYALPQAPQQYKQ 203 (622)
Q Consensus 142 l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTp-eGAr----------------dFlVPsR~~~g~-fYALpQSPQlyKQ 203 (622)
T Consensus 170 A~LerALi~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtGqlPkfe~~~Y~i~~~dl~Li~TAEvpL~~~~~--------~e 241 (422)
T PRK05431 170 ARLERALIQFMLDLHTEEGYTEVIPPYLVNEESMYGTGQLPKFEEDLFKIEDDDLYLIPTAEVPLTNLHR--------DE 241 (422)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHH--------CC
T ss_conf 9999999999999999879979967376367887445379744877541058871760565321233440--------11
Q ss_pred HHHCCCH-HHHEEEHHHHCCCCCCC--C-----CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 3310570-23311001103777665--5-----38000035654102689999999999999999999808723457732
Q gi|254780419|r 204 LLMASGF-DRYFQIAPCFRDEDPRS--D-----RLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFL 275 (622)
Q Consensus 204 lLmv~G~-dryfqiarcFRdEd~R~--d-----Rqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~ 275 (622)
T Consensus 242 il~~~~LPik~~~~S~CFR~EAGs~GkdtrGl~RvH-QF~KVE~-f~~~~pe~S~~~~e~~~~~~e-~i~~--~L~lpyr 316 (422)
T PRK05431 242 ILDEEELPIKYTAYSPCFRSEAGSAGRDTRGLIRQH-QFDKVEL-VKFTKPEDSYAELEELTGNAE-EILQ--KLELPYR 316 (422)
T ss_pred CCCHHHCCHHHEEECCHHHHCCCCCCCCCCCCEEEE-EECEEEE-EEECCHHHHHHHHHHHHHHHH-HHHH--HCCCCCC
T ss_conf 336543984452788365303133675567612443-0000343-353586779999999999999-9998--7598502
Q ss_pred CC
Q ss_conf 12
Q gi|254780419|r 276 RI 277 (622)
Q Consensus 276 rm 277 (622)
T Consensus 317 vv 318 (422)
T PRK05431 317 VV 318 (422)
T ss_pred CC
T ss_conf 35