HHsearch alignment for GI: 254780419 and conserved domain: PRK09350
>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=599.82 Aligned_cols=304 Identities=22% Similarity=0.368 Sum_probs=241.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC------CCCCCCCCCHHHHHHCCCCHHHHHHHHHC
Q ss_conf 121111212458999999987520365146203321124645664------54322222103443112385456443310
Q gi|254780419|r 134 RRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGAR------DFLVPSRVNQGSFYALPQAPQQYKQLLMA 207 (622)
Q Consensus 134 R~~~~~~~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTpeGAr------dFlVPsR~~~g~fYALpQSPQlyKQlLmv 207 (622)
T Consensus 8 ~~~as~~~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t~~~~~~~~f~~~~~~~~~~~~~~~y-L~~SPql~~k~l~~ 86 (325)
T PRK09350 8 QPSASIKNLLKRAAIIAEIRRFFADRGVLEVETPAMSQATVTDIHLVPFETRFVGPGHSQGKTLW-LMTSPEYHMKRLLA 86 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEE-EECCHHHHHHHHHH
T ss_conf 77147999999999999999999988968977984257788764676222102565545676645-50791999999986
Q ss_pred CCHHHHEEEHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 57023311001103777665538000035654102689999999999999999999808723457732121898875136
Q gi|254780419|r 208 SGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYG 287 (622)
Q Consensus 208 ~G~dryfqiarcFRdEd~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~rmtY~eAm~~YG 287 (622)
T Consensus 87 ~G~~rvfqI~~~FR~E~~~~~H~p-EFtmlE~~~~~~d~~d~m~~~e~ll~~~~~--------~~~~~~~~~~~~~~~~~ 157 (325)
T PRK09350 87 AGSGPIFQLCRSFRNEEAGRYHNP-EFTMLEWYRPHYDMYRLMNEVDDLLQQVLD--------CPPAESLSYQQAFLRYL 157 (325)
T ss_pred CCCCCEEEEEHHHCCCCCCCCCCC-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHC--------CCCCCEEEHHHHHHHHH
T ss_conf 678855896113228999876573-778889998154899999999999999974--------89852641999999981
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 77764447640124431017875245666874037847999962787665210356779998764202462355204777
Q gi|254780419|r 288 TDKPDLRNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESG 367 (622)
Q Consensus 288 sDKPDLR~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~ 367 (622)
T Consensus 158 ~~~~~~~~~---------------------------------------------~~l~~~~~~~~~~~---~~-~--~-- 184 (325)
T PRK09350 158 GIDPLSADK---------------------------------------------TQLREVAAKLDLSN---IA-D--T-- 184 (325)
T ss_pred CCCCCCCCH---------------------------------------------HHHHHHHHHCCCCC---CC-C--C--
T ss_conf 999654888---------------------------------------------99999999749975---66-7--5--
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECC
Q ss_conf 53335702553252789999998188755726998088541100134788999877300355751028896077053545
Q gi|254780419|r 368 NVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNE 447 (622)
Q Consensus 368 ~~~~~spi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~de 447 (622)
T Consensus 185 -------------~~~~~~l~~~l---------------------~---~~~ve~~l-----~~~~P~fv~d~P------ 216 (325)
T PRK09350 185 -------------EEDRDTLLQLL---------------------F---TFGVEPNI-----GKEKPTFVYHFP------ 216 (325)
T ss_pred -------------CCCHHHHHHHH---------------------H---HHHHHHHC-----CCCCCEEEECCC------
T ss_conf -------------34787999999---------------------9---99888750-----765876995584------
Q ss_pred CCCCCCHHHCCCCCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHH-------HCCCCHHHHHH
Q ss_conf 54700021100247664306554188777413136777756772125123156999999999-------85999899986
Q gi|254780419|r 448 EEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFS-------NVGISKEVVEN 520 (622)
Q Consensus 448 e~~r~~s~HHPFTaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~-------~lgl~~ee~~~ 520 (622)
T Consensus 217 ------~~~~~~~~~~~~d~-------~--~a~rfdl~~~G~El~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~ 281 (325)
T PRK09350 217 ------ASQAALAQISTEDH-------R--VAERFEVYFKGIELANGFHELTDAREQLQRFEQDNRKRAARGLPQQPIDQ 281 (325)
T ss_pred ------CCCCHHHCCCCCCC-------C--HHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf ------33370323587898-------5--22321010487896676456689999999999999999857998005589
Q ss_pred HHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 6778999986084973422246899999983739840321378999
Q gi|254780419|r 521 RFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQ 566 (622)
Q Consensus 521 ~Fg~lL~Al~yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPKt~ 566 (622)
T Consensus 282 ---~~l~a~~yG~PPhgG~glGlDRLvm~l~g~~~IRdvi~FP~dR 324 (325)
T PRK09350 282 ---NLIAALKAGLPDCSGVALGVDRLIMLALGAESIAEVIAFPVDR 324 (325)
T ss_pred ---HHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHHEECCCCCC
T ss_conf ---9999966799998357655999999981899388710788554