HHsearch alignment for GI: 254780419 and conserved domain: PRK09350

>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=100.00  E-value=0  Score=599.82  Aligned_cols=304  Identities=22%  Similarity=0.368  Sum_probs=241.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC------CCCCCCCCCHHHHHHCCCCHHHHHHHHHC
Q ss_conf             121111212458999999987520365146203321124645664------54322222103443112385456443310
Q gi|254780419|r  134 RRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGAR------DFLVPSRVNQGSFYALPQAPQQYKQLLMA  207 (622)
Q Consensus       134 R~~~~~~~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTpeGAr------dFlVPsR~~~g~fYALpQSPQlyKQlLmv  207 (622)
T Consensus         8 ~~~as~~~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t~~~~~~~~f~~~~~~~~~~~~~~~y-L~~SPql~~k~l~~   86 (325)
T PRK09350          8 QPSASIKNLLKRAAIIAEIRRFFADRGVLEVETPAMSQATVTDIHLVPFETRFVGPGHSQGKTLW-LMTSPEYHMKRLLA   86 (325)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEE-EECCHHHHHHHHHH
T ss_conf             77147999999999999999999988968977984257788764676222102565545676645-50791999999986


Q ss_pred             CCHHHHEEEHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             57023311001103777665538000035654102689999999999999999999808723457732121898875136
Q gi|254780419|r  208 SGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYG  287 (622)
Q Consensus       208 ~G~dryfqiarcFRdEd~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~~i~~pF~rmtY~eAm~~YG  287 (622)
T Consensus        87 ~G~~rvfqI~~~FR~E~~~~~H~p-EFtmlE~~~~~~d~~d~m~~~e~ll~~~~~--------~~~~~~~~~~~~~~~~~  157 (325)
T PRK09350         87 AGSGPIFQLCRSFRNEEAGRYHNP-EFTMLEWYRPHYDMYRLMNEVDDLLQQVLD--------CPPAESLSYQQAFLRYL  157 (325)
T ss_pred             CCCCCEEEEEHHHCCCCCCCCCCC-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHC--------CCCCCEEEHHHHHHHHH
T ss_conf             678855896113228999876573-778889998154899999999999999974--------89852641999999981


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             77764447640124431017875245666874037847999962787665210356779998764202462355204777
Q gi|254780419|r  288 TDKPDLRNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESG  367 (622)
Q Consensus       288 sDKPDLR~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~  367 (622)
T Consensus       158 ~~~~~~~~~---------------------------------------------~~l~~~~~~~~~~~---~~-~--~--  184 (325)
T PRK09350        158 GIDPLSADK---------------------------------------------TQLREVAAKLDLSN---IA-D--T--  184 (325)
T ss_pred             CCCCCCCCH---------------------------------------------HHHHHHHHHCCCCC---CC-C--C--
T ss_conf             999654888---------------------------------------------99999999749975---66-7--5--


Q ss_pred             CCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECC
Q ss_conf             53335702553252789999998188755726998088541100134788999877300355751028896077053545
Q gi|254780419|r  368 NVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNE  447 (622)
Q Consensus       368 ~~~~~spi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~de  447 (622)
T Consensus       185 -------------~~~~~~l~~~l---------------------~---~~~ve~~l-----~~~~P~fv~d~P------  216 (325)
T PRK09350        185 -------------EEDRDTLLQLL---------------------F---TFGVEPNI-----GKEKPTFVYHFP------  216 (325)
T ss_pred             -------------CCCHHHHHHHH---------------------H---HHHHHHHC-----CCCCCEEEECCC------
T ss_conf             -------------34787999999---------------------9---99888750-----765876995584------


Q ss_pred             CCCCCCHHHCCCCCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHH-------HCCCCHHHHHH
Q ss_conf             54700021100247664306554188777413136777756772125123156999999999-------85999899986
Q gi|254780419|r  448 EEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFS-------NVGISKEVVEN  520 (622)
Q Consensus       448 e~~r~~s~HHPFTaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~-------~lgl~~ee~~~  520 (622)
T Consensus       217 ------~~~~~~~~~~~~d~-------~--~a~rfdl~~~G~El~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~  281 (325)
T PRK09350        217 ------ASQAALAQISTEDH-------R--VAERFEVYFKGIELANGFHELTDAREQLQRFEQDNRKRAARGLPQQPIDQ  281 (325)
T ss_pred             ------CCCCHHHCCCCCCC-------C--HHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             ------33370323587898-------5--22321010487896676456689999999999999999857998005589


Q ss_pred             HHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf             6778999986084973422246899999983739840321378999
Q gi|254780419|r  521 RFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQ  566 (622)
Q Consensus       521 ~Fg~lL~Al~yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPKt~  566 (622)
T Consensus       282 ---~~l~a~~yG~PPhgG~glGlDRLvm~l~g~~~IRdvi~FP~dR  324 (325)
T PRK09350        282 ---NLIAALKAGLPDCSGVALGVDRLIMLALGAESIAEVIAFPVDR  324 (325)
T ss_pred             ---HHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHHEECCCCCC
T ss_conf             ---9999966799998357655999999981899388710788554