HHsearch alignment for GI: 254780419 and conserved domain: PRK12420
>PRK12420 histidyl-tRNA synthetase; Provisional.
Probab=97.82 E-value=6.9e-05 Score=54.45 Aligned_cols=98 Identities=20% Similarity=0.255 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCCC-CCC---CC-CCCCCCCCHHHHHHCC--CCHHHHHHHHHCC
Q ss_conf 12458999999987520365146203321-----12464-566---45-4322222103443112--3854564433105
Q gi|254780419|r 141 NIVKRTRIINSMRCRMIAENFIECSTPIL-----TASSP-EGA---RD-FLVPSRVNQGSFYALP--QAPQQYKQLLMAS 208 (622)
Q Consensus 141 ~l~~Rs~i~~~~R~~l~~~gF~EveTP~L-----~ksTp-eGA---rd-FlVPsR~~~g~fYALp--QSPQlyKQlLmv~ 208 (622)
T Consensus 17 e~~~~~~i~~~~~~~~~~~Gy~~I~tP~~E~~elf~~~~g~~~~i~kemy~f~D--~~gr~l~LRPe~Ta~iaR~~a~~~ 94 (421)
T PRK12420 17 EQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQD--QGKRDLALRYDLTIPFAKVVAMNP 94 (421)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCHHHHHEEEEEC--CCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 999999999999999998599472476501187642447884422411078881--899879856776589999999775
Q ss_pred CH---HHHEEEHHHHCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 70---2331100110377766553800003565410
Q gi|254780419|r 209 GF---DRYFQIAPCFRDEDPRSDRLPGEFYQLDMEM 241 (622)
Q Consensus 209 G~---dryfqiarcFRdEd~R~dRqp~EFTqlD~Em 241 (622)
T Consensus 95 ~~~~P~k~~y~g~vfR~erpq~GR~R-eF~Q~GvEi 129 (421)
T PRK12420 95 NIRLPFKRYEIGKVFRDGPIKQGRFR-EFIQCDVDI 129 (421)
T ss_pred CCCCCEEEEEECCEEECCCCCCCCCC-EEEECCEEE
T ss_conf 77787458887677853898788555-134357542