HHsearch alignment for GI: 254780419 and conserved domain: PRK12445
>PRK12445 lysyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=885.58 Aligned_cols=431 Identities=24% Similarity=0.406 Sum_probs=348.1
Q ss_pred CC-CCCCHHHCCHHH----------CCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCC---HHH-HHHHCCCC
Q ss_conf 77-742042369799----------8988999979800444698799999779825999974881---578-99852898
Q gi|254780419|r 3 RY-RTHSCGDLGVSD----------VGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDS---ACF-EIAKSVRS 67 (622)
Q Consensus 3 ~~-Rth~cg~l~~~~----------~g~~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~---~~~-~~~~~l~~ 67 (622)
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrv~~~R~~Gk~~F~~LrD~~G~iQ~~~~~~~~~~~~~~~~~~~~~~ 118 (505)
T PRK12445 39 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDL 118 (505)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 89587709999998545684100147988999988987874798399999859843999995886866899999751215
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEE-CCCCCCCCHHHHH
Q ss_conf 858999999997586555887778659999889999502117998645766789878211232000-1211112124589
Q gi|254780419|r 68 EWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREYPESIRFKYRFLDL-RRDTLHKNIVKRT 146 (622)
Q Consensus 68 esvv~v~G~V~~r~~~~~n~~~~tG~~Ei~~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~LdL-R~~~~~~~l~~Rs 146 (622)
T Consensus 119 gdii~v~G~~~---------~t~tGe~~i~~~~~~ilsksl~-plP~k~~g~~d~e~R~r~RyLDLir~~~~~~~~~~Rs 188 (505)
T PRK12445 119 GDIIGARGTLF---------KTQTGELSIHCTELRLLTKALR-PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRS 188 (505)
T ss_pred CEEEEEEEEEE---------CCCCCCCCEEEEEEEEECCCCC-CCCCCCCCCCCHHHHHHHHEECCCCCHHHHHHHHHHH
T ss_conf 34999963660---------4787762125789999347778-9897455787887763411114365999999999999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHHHEEEHHHHCCCC
Q ss_conf 999999875203651462033211246456--645432222210344311238545644331057023311001103777
Q gi|254780419|r 147 RIINSMRCRMIAENFIECSTPILTASSPEG--ARDFLVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDED 224 (622)
Q Consensus 147 ~i~~~~R~~l~~~gF~EveTP~L~ksTpeG--ArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G~dryfqiarcFRdEd 224 (622)
T Consensus 189 ~ii~~iR~~l~~~gF~EVeTPil-~~~~gGa~Arpf~t~~~~~~~~~y-L~qSPQLykk~LmvgGfdRvfeI~r~FRnE~ 266 (505)
T PRK12445 189 KILAAIRQFMVARGFMEVETPMM-QVIPGGASARPFITHHNALDLDMY-LRIAPELYLKRLVVGGFERVFEINRNFRNEG 266 (505)
T ss_pred HHHHHHHHHHHHCCCEEEECCCC-CCCCCCCCCCEEEECCCCCCCCEE-ECCCCHHHHHHHHHCCCCCEEEHHHHHHCCC
T ss_conf 99999999999779389978875-554587666103304667886743-4169399999998579744576278760788
Q ss_pred CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHHHHCC--CCCCCC
Q ss_conf 66553800003565410268999999999999999999980872---------3457732121898875136--777644
Q gi|254780419|r 225 PRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGN---------TVSNNFLRICYDDAIRRYG--TDKPDL 293 (622)
Q Consensus 225 ~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~---------~i~~pF~rmtY~eAm~~YG--sDKPDL 293 (622)
T Consensus 267 ~~~~H~P-EFT~lE~e~af~d~~dvm~l~E~li~~i~~~v~g~~~i~y~~~~~d~~~pf~rlt~~eai~~~~~~~~~~~~ 345 (505)
T PRK12445 267 ISVRHNP-EFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADL 345 (505)
T ss_pred CCCCCCH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHCCCCCHHHC
T ss_conf 8866544-454356876327898999999999999999844883586652012016984103499999985688874533
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 47640124431017875245666874037847999962787665210356779998764202462355204777533357
Q gi|254780419|r 294 RNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMG 373 (622)
Q Consensus 294 R~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~s 373 (622)
T Consensus 346 ---------~------------------------------------~~~~~~~~~~~~g~~------~--~~-------- 364 (505)
T PRK12445 346 ---------D------------------------------------NFDAAKALAESIGIT------V--EK-------- 364 (505)
T ss_pred ---------C------------------------------------CHHHHHHHHHHCCCC------C--CC--------
T ss_conf ---------4------------------------------------469999999985985------3--44--------
Q ss_pred CHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECCCCCCCC
Q ss_conf 02553252789999998188755726998088541100134788999877300355751028896077053545547000
Q gi|254780419|r 374 PVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNEEEKKID 453 (622)
Q Consensus 374 pi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~dee~~r~~ 453 (622)
T Consensus 365 ------------------------------------~~~~g~l~~~~~~e--~~e~~l~~P~fv~d~P~----------- 395 (505)
T PRK12445 365 ------------------------------------SWGLGRIVTEIFDE--VAEAHLIQPTFITEYPA----------- 395 (505)
T ss_pred ------------------------------------CCCHHHHHHHHHHH--HHHHCCCCCCCCCCCCC-----------
T ss_conf ------------------------------------43442799999887--77750555542447754-----------
Q ss_pred HHHCCCCCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
Q ss_conf 2110024766430655418877741313677775677212512315699999999985----999899986677899998
Q gi|254780419|r 454 FAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNV----GISKEVVENRFGGLYRAF 529 (622)
Q Consensus 454 s~HHPFTaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~~l----gl~~ee~~~~Fg~lL~Al 529 (622)
T Consensus 396 -e~splak~~~~-------~p~--~t~rfdl~i~G~Ei~nG~~el~Dp~~Q~~rf~~q~~~k~~g~~e~~~~de~fl~Al 465 (505)
T PRK12445 396 -EVSPLARRNDV-------NPE--ITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTAL 465 (505)
T ss_pred -CCCCHHCCCCC-------CHH--HHHEEEEEECCEEEEECEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHH
T ss_conf -45830016799-------841--40145351189998746022689999999999988777547660001228899996
Q ss_pred HCCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 6084973422246899999983739840321378999
Q gi|254780419|r 530 QCGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQ 566 (622)
Q Consensus 530 ~yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPKt~ 566 (622)
T Consensus 466 ~yG~PPhgG~glGiDRLvMlLtg~~sIRdVI~FP~~r 502 (505)
T PRK12445 466 EYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMR 502 (505)
T ss_pred HCCCCCHHCCHHHHHHHHHHHCCCCCHHEECCCCCCC
T ss_conf 5699850034379999999981999564071699989