HHsearch alignment for GI: 254780419 and conserved domain: PRK12445

>PRK12445 lysyl-tRNA synthetase; Reviewed.
Probab=100.00  E-value=0  Score=885.58  Aligned_cols=431  Identities=24%  Similarity=0.406  Sum_probs=348.1

Q ss_pred             CC-CCCCHHHCCHHH----------CCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCC---HHH-HHHHCCCC
Q ss_conf             77-742042369799----------8988999979800444698799999779825999974881---578-99852898
Q gi|254780419|r    3 RY-RTHSCGDLGVSD----------VGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDS---ACF-EIAKSVRS   67 (622)
Q Consensus         3 ~~-Rth~cg~l~~~~----------~g~~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~---~~~-~~~~~l~~   67 (622)
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrv~~~R~~Gk~~F~~LrD~~G~iQ~~~~~~~~~~~~~~~~~~~~~~  118 (505)
T PRK12445         39 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDL  118 (505)
T ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             89587709999998545684100147988999988987874798399999859843999995886866899999751215


Q ss_pred             CCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEE-CCCCCCCCHHHHH
Q ss_conf             858999999997586555887778659999889999502117998645766789878211232000-1211112124589
Q gi|254780419|r   68 EWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREYPESIRFKYRFLDL-RRDTLHKNIVKRT  146 (622)
Q Consensus        68 esvv~v~G~V~~r~~~~~n~~~~tG~~Ei~~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~LdL-R~~~~~~~l~~Rs  146 (622)
T Consensus       119 gdii~v~G~~~---------~t~tGe~~i~~~~~~ilsksl~-plP~k~~g~~d~e~R~r~RyLDLir~~~~~~~~~~Rs  188 (505)
T PRK12445        119 GDIIGARGTLF---------KTQTGELSIHCTELRLLTKALR-PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRS  188 (505)
T ss_pred             CEEEEEEEEEE---------CCCCCCCCEEEEEEEEECCCCC-CCCCCCCCCCCHHHHHHHHEECCCCCHHHHHHHHHHH
T ss_conf             34999963660---------4787762125789999347778-9897455787887763411114365999999999999


Q ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHHHEEEHHHHCCCC
Q ss_conf             999999875203651462033211246456--645432222210344311238545644331057023311001103777
Q gi|254780419|r  147 RIINSMRCRMIAENFIECSTPILTASSPEG--ARDFLVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDED  224 (622)
Q Consensus       147 ~i~~~~R~~l~~~gF~EveTP~L~ksTpeG--ArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G~dryfqiarcFRdEd  224 (622)
T Consensus       189 ~ii~~iR~~l~~~gF~EVeTPil-~~~~gGa~Arpf~t~~~~~~~~~y-L~qSPQLykk~LmvgGfdRvfeI~r~FRnE~  266 (505)
T PRK12445        189 KILAAIRQFMVARGFMEVETPMM-QVIPGGASARPFITHHNALDLDMY-LRIAPELYLKRLVVGGFERVFEINRNFRNEG  266 (505)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCC-CCCCCCCCCCEEEECCCCCCCCEE-ECCCCHHHHHHHHHCCCCCEEEHHHHHHCCC
T ss_conf             99999999999779389978875-554587666103304667886743-4169399999998579744576278760788


Q ss_pred             CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHHHHCC--CCCCCC
Q ss_conf             66553800003565410268999999999999999999980872---------3457732121898875136--777644
Q gi|254780419|r  225 PRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGN---------TVSNNFLRICYDDAIRRYG--TDKPDL  293 (622)
Q Consensus       225 ~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~~---------~i~~pF~rmtY~eAm~~YG--sDKPDL  293 (622)
T Consensus       267 ~~~~H~P-EFT~lE~e~af~d~~dvm~l~E~li~~i~~~v~g~~~i~y~~~~~d~~~pf~rlt~~eai~~~~~~~~~~~~  345 (505)
T PRK12445        267 ISVRHNP-EFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADL  345 (505)
T ss_pred             CCCCCCH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHCCCCCHHHC
T ss_conf             8866544-454356876327898999999999999999844883586652012016984103499999985688874533


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf             47640124431017875245666874037847999962787665210356779998764202462355204777533357
Q gi|254780419|r  294 RNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWRLDESGNVAGMG  373 (622)
Q Consensus       294 R~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~~~~~~~~~~~s  373 (622)
T Consensus       346 ---------~------------------------------------~~~~~~~~~~~~g~~------~--~~--------  364 (505)
T PRK12445        346 ---------D------------------------------------NFDAAKALAESIGIT------V--EK--------  364 (505)
T ss_pred             ---------C------------------------------------CHHHHHHHHHHCCCC------C--CC--------
T ss_conf             ---------4------------------------------------469999999985985------3--44--------


Q ss_pred             CHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEECCCCCCCC
Q ss_conf             02553252789999998188755726998088541100134788999877300355751028896077053545547000
Q gi|254780419|r  374 PVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPFYEWNEEEKKID  453 (622)
Q Consensus       374 pi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPLFe~dee~~r~~  453 (622)
T Consensus       365 ------------------------------------~~~~g~l~~~~~~e--~~e~~l~~P~fv~d~P~-----------  395 (505)
T PRK12445        365 ------------------------------------SWGLGRIVTEIFDE--VAEAHLIQPTFITEYPA-----------  395 (505)
T ss_pred             ------------------------------------CCCHHHHHHHHHHH--HHHHCCCCCCCCCCCCC-----------
T ss_conf             ------------------------------------43442799999887--77750555542447754-----------


Q ss_pred             HHHCCCCCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
Q ss_conf             2110024766430655418877741313677775677212512315699999999985----999899986677899998
Q gi|254780419|r  454 FAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNV----GISKEVVENRFGGLYRAF  529 (622)
Q Consensus       454 s~HHPFTaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~~l----gl~~ee~~~~Fg~lL~Al  529 (622)
T Consensus       396 -e~splak~~~~-------~p~--~t~rfdl~i~G~Ei~nG~~el~Dp~~Q~~rf~~q~~~k~~g~~e~~~~de~fl~Al  465 (505)
T PRK12445        396 -EVSPLARRNDV-------NPE--ITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTAL  465 (505)
T ss_pred             -CCCCHHCCCCC-------CHH--HHHEEEEEECCEEEEECEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHH
T ss_conf             -45830016799-------841--40145351189998746022689999999999988777547660001228899996


Q ss_pred             HCCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf             6084973422246899999983739840321378999
Q gi|254780419|r  530 QCGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQ  566 (622)
Q Consensus       530 ~yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPKt~  566 (622)
T Consensus       466 ~yG~PPhgG~glGiDRLvMlLtg~~sIRdVI~FP~~r  502 (505)
T PRK12445        466 EYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMR  502 (505)
T ss_pred             HCCCCCHHCCHHHHHHHHHHHCCCCCHHEECCCCCCC
T ss_conf             5699850034379999999981999564071699989