HHsearch alignment for GI: 254780419 and conserved domain: TIGR02367
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=97.74 E-value=3.1e-05 Score=56.97 Aligned_cols=110 Identities=25% Similarity=0.420 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCC-C--CC-CC-------CCCCCCCCHHHHHHCC--CCHHHHHHHH----H
Q ss_conf 5899999998752036514620332112464-5--66-45-------4322222103443112--3854564433----1
Q gi|254780419|r 144 KRTRIINSMRCRMIAENFIECSTPILTASSP-E--GA-RD-------FLVPSRVNQGSFYALP--QAPQQYKQLL----M 206 (622)
Q Consensus 144 ~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTp-e--GA-rd-------FlVPsR~~~g~fYALp--QSPQlyKQlL----m 206 (622)
T Consensus 241 ylGkler~it~ffvdrGfleiksPiliP~ey~ermGi~ndtelskqif----rvdkn--~ClrPmlaP~lynylrkldr~ 314 (453)
T TIGR02367 241 YLGKLEREITKFFVDRGFLEIKSPILIPLEYVERMGIDNDTELSKQIF----RVDKN--LCLRPMLAPTLYNYLRKLDRI 314 (453)
T ss_pred HHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCCCHHHHHHHH----HHHHH--HHCCCCHHHHHHHHHHHHHHH
T ss_conf 754676667666531240232363101056886507764025666666----44100--101210005689999998753
Q ss_pred CCCHHHHEEEHHHHCCCCCCCCCCCCCEEEEEEE-E-CCCCHHHHHHHHHHHHHHH
Q ss_conf 0570233110011037776655380000356541-0-2689999999999999999
Q gi|254780419|r 207 ASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDME-M-SFVEQDDILNTMENVLRGV 260 (622)
Q Consensus 207 v~G~dryfqiarcFRdEd~R~dRqp~EFTqlD~E-m-sF~~~edvm~l~E~li~~i 260 (622)
T Consensus 315 lP~Pik~fe~GPCyrkesd-Gkehleeftm~nfCqmGsGCtrenle~~i~~fl~~l 369 (453)
T TIGR02367 315 LPDPIKVFEVGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLEALIKEFLDYL 369 (453)
T ss_pred CCCCEEEEEECCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7896479860675243565-335666666555431478732677999999988761