HHsearch alignment for GI: 254780419 and conserved domain: cd00774

>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.24  E-value=0.00061  Score=47.66  Aligned_cols=95  Identities=32%  Similarity=0.534  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHC--CCEEEEECCCCCC-------CCC---CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             24589999999875203--6514620332112-------464---56645432222210344311238545644331057
Q gi|254780419|r  142 IVKRTRIINSMRCRMIA--ENFIECSTPILTA-------SSP---EGARDFLVPSRVNQGSFYALPQAPQQYKQLLMASG  209 (622)
Q Consensus       142 l~~Rs~i~~~~R~~l~~--~gF~EveTP~L~k-------sTp---eGArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G  209 (622)
T Consensus        32 ~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~p~LmF~T~iG~~~~~~~~~yLRPE-TAQGifv-------nFk~~~~~~r  103 (254)
T cd00774          32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVESGGNLGYLRPE-TAQGIFV-------NFKNLLEFNR  103 (254)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCCCCCCCCEEECHH-HHHHHHH-------HHHHHHHHCC
T ss_conf             9999999999999987437987995410036632200121565589860353634-5347798-------7899999648


Q ss_pred             HH---HHEEEHHHHCCCCC-CCC--CCCCCEEEEEEEECCCCH
Q ss_conf             02---33110011037776-655--380000356541026899
Q gi|254780419|r  210 FD---RYFQIAPCFRDEDP-RSD--RLPGEFYQLDMEMSFVEQ  246 (622)
Q Consensus       210 ~d---ryfqiarcFRdEd~-R~d--Rqp~EFTqlD~EmsF~~~  246 (622)
T Consensus       104 ~kLPFGiaQIGk~FRNEIsPr~~l~R~R-EF~q~EiE~-F~~P  144 (254)
T cd00774         104 RKLPFGVAQIGKSFRNEISPRNGLFRVR-EFTQAEIEF-FVDP  144 (254)
T ss_pred             CCCCEEEEEEEECCCCCCCCCCCCCCHH-CHHHHEEEE-EECC
T ss_conf             8888445654202267347776754000-002125788-8579