HHsearch alignment for GI: 254780419 and conserved domain: cd00774
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.24 E-value=0.00061 Score=47.66 Aligned_cols=95 Identities=32% Similarity=0.534 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHC--CCEEEEECCCCCC-------CCC---CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 24589999999875203--6514620332112-------464---56645432222210344311238545644331057
Q gi|254780419|r 142 IVKRTRIINSMRCRMIA--ENFIECSTPILTA-------SSP---EGARDFLVPSRVNQGSFYALPQAPQQYKQLLMASG 209 (622)
Q Consensus 142 l~~Rs~i~~~~R~~l~~--~gF~EveTP~L~k-------sTp---eGArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G 209 (622)
T Consensus 32 ~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~p~LmF~T~iG~~~~~~~~~yLRPE-TAQGifv-------nFk~~~~~~r 103 (254)
T cd00774 32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVESGGNLGYLRPE-TAQGIFV-------NFKNLLEFNR 103 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCCCCCCCCEEECHH-HHHHHHH-------HHHHHHHHCC
T ss_conf 9999999999999987437987995410036632200121565589860353634-5347798-------7899999648
Q ss_pred HH---HHEEEHHHHCCCCC-CCC--CCCCCEEEEEEEECCCCH
Q ss_conf 02---33110011037776-655--380000356541026899
Q gi|254780419|r 210 FD---RYFQIAPCFRDEDP-RSD--RLPGEFYQLDMEMSFVEQ 246 (622)
Q Consensus 210 ~d---ryfqiarcFRdEd~-R~d--Rqp~EFTqlD~EmsF~~~ 246 (622)
T Consensus 104 ~kLPFGiaQIGk~FRNEIsPr~~l~R~R-EF~q~EiE~-F~~P 144 (254)
T cd00774 104 RKLPFGVAQIGKSFRNEISPRNGLFRVR-EFTQAEIEF-FVDP 144 (254)
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCHH-CHHHHEEEE-EECC
T ss_conf 8888445654202267347776754000-002125788-8579