HHsearch alignment for GI: 254780419 and conserved domain: cd00775
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=0 Score=595.43 Aligned_cols=312 Identities=23% Similarity=0.413 Sum_probs=236.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCHHH
Q ss_conf 211112124589999999875203651462033211246456--645432222210344311238545644331057023
Q gi|254780419|r 135 RDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEG--ARDFLVPSRVNQGSFYALPQAPQQYKQLLMASGFDR 212 (622)
Q Consensus 135 ~~~~~~~l~~Rs~i~~~~R~~l~~~gF~EveTP~L~ksTpeG--ArdFlVPsR~~~g~fYALpQSPQlyKQlLmv~G~dr 212 (622)
T Consensus 1 n~~~~~~~~~Rs~i~~~iR~ff~~~gF~Ev~TPiL-~~~~~g~~~~~f~~~~~~~~~~~y-L~qSpQl~~q~l~~~g~~r 78 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPML-QPIAGGAAARPFITHHNALDMDLY-LRIAPELYLKRLIVGGFER 78 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC-CCCCCCCCCCCEEECCCCCCCCCC-CCCCHHHHHHHHHHCCCCC
T ss_conf 97899999999999999999999889889979865-566887567531322446786723-0689899999998567776
Q ss_pred HEEEHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC---------CCCCCCCCCCCHHHHH
Q ss_conf 3110011037776655380000356541026899999999999999999998087---------2345773212189887
Q gi|254780419|r 213 YFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNG---------NTVSNNFLRICYDDAI 283 (622)
Q Consensus 213 yfqiarcFRdEd~R~dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~i~~~v~~~---------~~i~~pF~rmtY~eAm 283 (622)
T Consensus 79 vfqI~p~FR~E~~~~rHl~-EFtmle~E~~f~d~~dvm~~~E~li~~i~~~~~~~~~~~~~~~~~d~~~pf~rit~~ea~ 157 (329)
T cd00775 79 VYEIGRNFRNEGIDLTHNP-EFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDAL 157 (329)
T ss_pred EEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 7998102247999977473-456345777447999999999999999999983887531466123568997437699999
Q ss_pred HHC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 513-6777644476401244310178752456668740378479999627876652103567799987642024623552
Q gi|254780419|r 284 RRY-GTDKPDLRNPIIMHNVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIFWR 362 (622)
Q Consensus 284 ~~Y-GsDKPDLR~~lei~dit~~~~~~~f~vf~~~~~~~~~~~v~~i~~~~~~~srk~~D~l~e~ak~~g~kgL~~i~~~ 362 (622)
T Consensus 158 ~~~~g~~~~~~~~~----------------------------------------------~~~~~~k~~~~~-~~~---~ 187 (329)
T cd00775 158 KEKTGIDFPELDLE----------------------------------------------QPEELAKLLAKL-IKE---K 187 (329)
T ss_pred HHHHCCCCCCCCCC----------------------------------------------CHHHHHHHHHHH-CCC---C
T ss_conf 99858998766732----------------------------------------------389999998775-686---6
Q ss_pred ECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 04777533357025532527899999981887557269980885411001347889998773003557510288960770
Q gi|254780419|r 363 LDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHIAQELGIINCNCFEFCWIMDFPF 442 (622)
Q Consensus 363 ~~~~~~~~~~spi~K~l~~~~~~~l~~~~~~~~GD~i~f~a~~~~~~~~~lg~lR~~ia~~l~li~~~~~~flWV~DFPL 442 (622)
T Consensus 188 ~~~--~~~------------------------------------------~~~~~~~~~~--~~ie~~~~~p~fi~dyP~ 221 (329)
T cd00775 188 IEK--PRT------------------------------------------LGKLLDKLFE--EFVEPTLIQPTFIIDHPV 221 (329)
T ss_pred CCC--CCC------------------------------------------HHHHHHHHHH--HHHHHHCCCCEEEECCHH
T ss_conf 567--877------------------------------------------8999999999--999751379689947701
Q ss_pred EEECCCCCCCCHHHCCCCCCCCCHHHHHCCCHHHHHHHCCCEEECCEEECCCCEECCCHHHHHHHHHHCC----CCHHHH
Q ss_conf 5354554700021100247664306554188777413136777756772125123156999999999859----998999
Q gi|254780419|r 443 YEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNVG----ISKEVV 518 (622)
Q Consensus 443 Fe~dee~~r~~s~HHPFTaP~~~~~~l~~~dp~~v~a~~YDLVlNG~EiggGSiRIHd~~iQ~~~f~~lg----l~~ee~ 518 (622)
T Consensus 222 ------------~~~pf~~~~~~~-------~~--~~~~fdl~~~G~Ei~~G~~el~d~~~q~~r~~~~~~~~~~~~~~~ 280 (329)
T cd00775 222 ------------EISPLAKRHRSN-------PG--LTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEA 280 (329)
T ss_pred ------------HCCCHHHCCCCC-------CC--EEEECCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHCCCCCH
T ss_conf ------------118443129999-------77--010012456877984153311799999999999999985467511
Q ss_pred HHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 866778999986084973422246899999983739840321378999
Q gi|254780419|r 519 ENRFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQ 566 (622)
Q Consensus 519 ~~~Fg~lL~Al~yG~PPHgG~alGlDRlvmll~g~~sIRdVIaFPKt~ 566 (622)
T Consensus 281 ~~~de~yl~a~k~G~pPhgG~glGldRLvm~l~g~~nIRdvi~FP~~r 328 (329)
T cd00775 281 MMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCHHHHCCCCCCCC
T ss_conf 242399999966799986114099999999993898187513799989