HHsearch alignment for GI: 254780419 and conserved domain: cd04319
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.91 E-value=1.8e-23 Score=187.50 Aligned_cols=101 Identities=31% Similarity=0.476 Sum_probs=89.0
Q ss_pred EEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCC--CHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 899997980044469879999977982599997488--157899852898858999999997586555887778659999
Q gi|254780419|r 20 FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPD--SACFEIAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELS 97 (622)
Q Consensus 20 ~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~--~~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~~Ei~ 97 (622)
T Consensus 1 eV~l~GWV~~~R~~g~i~Fi~LRD~tG~iQ~v~~~~~~~~~~~~~~~l~~Es~v~v~G~v~~~------~~~~~g-iEi~ 73 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKAD------PRAPGG-AEVH 73 (103)
T ss_pred CEEEEEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEEEEEC------CCCCCC-EEEE
T ss_conf 999999996763289779999826982799998787797999999856863999997798868------999987-8899
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCE
Q ss_conf 8899995021179986457667898782112320
Q gi|254780419|r 98 AQKIEILSVAEELPLPVFGEREYPESIRFKYRFL 131 (622)
Q Consensus 98 ~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~L 131 (622)
T Consensus 74 ~~~ieIl~~a~~~Pi~----~~~~~e~~l~~R~L 103 (103)
T cd04319 74 GEKLEIIQNVEFFPIT----EDASDEFLLDVRHL 103 (103)
T ss_pred EEEEEEEECCCCCCCC----CCCCCHHHHHCCCC
T ss_conf 7289999858798988----98880231101379