HHsearch alignment for GI: 254780419 and conserved domain: cd04322

>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.88  E-value=3.7e-22  Score=178.01  Aligned_cols=104  Identities=27%  Similarity=0.369  Sum_probs=87.8

Q ss_pred             EEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCC---HHHHHH-HCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEE
Q ss_conf             8999979800444698799999779825999974881---578998-528988589999999975865558877786599
Q gi|254780419|r   20 FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDS---ACFEIA-KSVRSEWVLCIDGLVMSRSAETINANIITGQIE   95 (622)
Q Consensus        20 ~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~---~~~~~~-~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~~E   95 (622)
T Consensus         1 ~V~v~GrV~~~R~~G~l~FidLrD~~g~iQv~~~~~~~~~~~~~~~~~~~~~gDvv~v~G~v~~---------t~tGel~   71 (108)
T cd04322           1 EVSVAGRIMSKRGSGKLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFK---------TKTGELS   71 (108)
T ss_pred             CEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEEC---------CCCCEEE
T ss_conf             9899999984706798299999969961899997564775677777634443449999978751---------7993499


Q ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEE
Q ss_conf             99889999502117998645766789878211232000
Q gi|254780419|r   96 LSAQKIEILSVAEELPLPVFGEREYPESIRFKYRFLDL  133 (622)
Q Consensus        96 i~~~~~~il~~a~~~P~~~~~~~~~~e~~rl~~R~LdL  133 (622)
T Consensus        72 v~~~~~~lLsk~l~-plP~~~~~~~~~e~r~r~RyLDL  108 (108)
T cd04322          72 IFVKEFTLLSKSLR-PLPEKFHGLTDVETRYRQRYLDL  108 (108)
T ss_pred             EEEEEHHCCCCCCC-CCCCCCCCCCCHHHEEHHHCCCC
T ss_conf             99649120066678-99944657779612401200369