HHsearch alignment for GI: 254780419 and conserved domain: cd04482
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=94.93 E-value=0.34 Score=28.02 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=58.6
Q ss_pred EEEEEECCCC--CCCCEEEEEEECCCCEEEEEECCCC-HHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 9997980044--4698799999779825999974881-578998528988589999999975865558877786599998
Q gi|254780419|r 22 RLSGWVHRVR--PHGGIIFLDIRDHYGITQVVANPDS-ACFEIAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSA 98 (622)
Q Consensus 22 ~i~GwV~~~R--~~g~l~F~~lrD~sG~~Q~v~~~~~-~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~~Ei~~ 98 (622)
T Consensus 2 ~~~G~V~~~P~~i~GGHv~~~v~~~~~~i~~~afepTg~~r~~~r~L~~GD~I~v~G~v~~------------~~-~lnl 68 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRP------------GT-TLNL 68 (91)
T ss_pred EEEEEEECCEEEECCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHCCCCCEEEEEEEECC------------CC-EEEE
T ss_conf 8999997864895287499999939988999999877508899973899999999999878------------98-0889
Q ss_pred EEEEEEECCC
Q ss_conf 8999950211
Q gi|254780419|r 99 QKIEILSVAE 108 (622)
Q Consensus 99 ~~~~il~~a~ 108 (622)
T Consensus 69 Ekl~v~~L~~ 78 (91)
T cd04482 69 EKLRVIRLAR 78 (91)
T ss_pred EEEEEEECCC
T ss_conf 9999632222