HHsearch alignment for GI: 254780419 and conserved domain: cd04483
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=96.30 E-value=0.051 Score=33.90 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=53.0
Q ss_pred EEEEECCCCCCCCEEEEEEECCCCEEEEEECCC-------------------CHHHHHHHCCCCCCEEEEEEEEEE-CCC
Q ss_conf 997980044469879999977982599997488-------------------157899852898858999999997-586
Q gi|254780419|r 23 LSGWVHRVRPHGGIIFLDIRDHYGITQVVANPD-------------------SACFEIAKSVRSEWVLCIDGLVMS-RSA 82 (622)
Q Consensus 23 i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~-------------------~~~~~~~~~l~~esvv~v~G~V~~-r~~ 82 (622)
T Consensus 2 IlG~VVs~~ere~f~~y~vDDgTGcI~Cv~W~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~l~iG~llRVRG~I~~yR-- 79 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTYR-- 79 (92)
T ss_pred EEEEEEEEEEECCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEE--
T ss_conf 379999997605716998608986699899604576776666784454444578887611577523899942688870--
Q ss_pred CCCCCCCCCCEEEEEEEEEE
Q ss_conf 55588777865999988999
Q gi|254780419|r 83 ETINANIITGQIELSAQKIE 102 (622)
Q Consensus 83 ~~~n~~~~tG~~Ei~~~~~~ 102 (622)
T Consensus 80 ---------g~rei~as~~~ 90 (92)
T cd04483 80 ---------GEREINASVVY 90 (92)
T ss_pred ---------CEEEEEEEEEE
T ss_conf ---------44899689999