HHsearch alignment for GI: 254780419 and conserved domain: cd04485
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.65 E-value=0.12 Score=31.30 Aligned_cols=75 Identities=29% Similarity=0.468 Sum_probs=54.2
Q ss_pred EEEEEECCCCC----CC-CEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 99979800444----69-87999997798259999748815789985289885899999999758655588777865999
Q gi|254780419|r 22 RLSGWVHRVRP----HG-GIIFLDIRDHYGITQVVANPDSACFEIAKSVRSEWVLCIDGLVMSRSAETINANIITGQIEL 96 (622)
Q Consensus 22 ~i~GwV~~~R~----~g-~l~F~~lrD~sG~~Q~v~~~~~~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~~Ei 96 (622)
T Consensus 1 ~iaG~I~~~k~~~tk~G~~~a~~tleD~~g~~e~~~F~~~-~~~~~~~l~~~~~v~i~g~v~~~~----------~~~~l 69 (84)
T cd04485 1 TVAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPET-YEKYRDLLKEDALLLVEGKVERRD----------GGLRL 69 (84)
T ss_pred CEEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEECHHH-HHHHHHHHCCCCEEEEEEEEEEEC----------CEEEE
T ss_conf 9899999989985579998999999437874999996999-999888744698899999999969----------98999
Q ss_pred EEEEEEEEECC
Q ss_conf 98899995021
Q gi|254780419|r 97 SAQKIEILSVA 107 (622)
Q Consensus 97 ~~~~~~il~~a 107 (622)
T Consensus 70 ~~~~i~~l~~~ 80 (84)
T cd04485 70 IAERIEDLEDA 80 (84)
T ss_pred EEEEEEEHHHH
T ss_conf 99994678998