HHsearch alignment for GI: 254780419 and conserved domain: cd04487
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=95.85 E-value=0.045 Score=34.30 Aligned_cols=73 Identities=22% Similarity=0.386 Sum_probs=54.8
Q ss_pred EEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE
Q ss_conf 99997980044469879999977982599997488157899852898858999999997586555887778659999889
Q gi|254780419|r 21 VRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFEIAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSAQK 100 (622)
Q Consensus 21 V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~~Ei~~~~ 100 (622)
T Consensus 1 V~i~GeV~qikQT~GPTIFti~Detg~v~~AAFeeaG-vRAyPev~~gdiV~v~G~V~~r~----------g~lQiE~~~ 69 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDETGTVWAAAFEEAG-VRAYPEVEVGDIVRVTGEVEPRD----------GQLQIEVES 69 (73)
T ss_pred CEEEEEEEEEEECCCCEEEEEECCCCCEEHHHHCCCC-CCCCCCCCCCCEEEEEEEEEEEC----------CEEEEEEEE
T ss_conf 9799999998988999999997599969820513067-41288878898899998999708----------858999730
Q ss_pred EEEE
Q ss_conf 9995
Q gi|254780419|r 101 IEIL 104 (622)
Q Consensus 101 ~~il 104 (622)
T Consensus 70 ~~~L 73 (73)
T cd04487 70 LEVL 73 (73)
T ss_pred EECC
T ss_conf 2509