HHsearch alignment for GI: 254780419 and conserved domain: cd04490
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=96.29 E-value=0.033 Score=35.31 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=50.8
Q ss_pred EEEEEEEECCCCCCC-CEEEEEEECCCCEEEEEECCCC-HHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 899997980044469-8799999779825999974881-57899852898858999999997
Q gi|254780419|r 20 FVRLSGWVHRVRPHG-GIIFLDIRDHYGITQVVANPDS-ACFEIAKSVRSEWVLCIDGLVMS 79 (622)
Q Consensus 20 ~V~i~GwV~~~R~~g-~l~F~~lrD~sG~~Q~v~~~~~-~~~~~~~~l~~esvv~v~G~V~~ 79 (622)
T Consensus 1 ev~iIGmV~d~r~TknG~~~~~lED~TG~i~vl~~kd~~~~~~~~~~ll~DeVIGV~G~~s~ 62 (79)
T cd04490 1 EVSIIGMVNDVRSTKNGHRIVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVSK 62 (79)
T ss_pred CEEEEEEECCCEECCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 96999999332761688789999879998999996893677566752568878999999878