HHsearch alignment for GI: 254780419 and conserved domain: cd04490

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=96.29  E-value=0.033  Score=35.31  Aligned_cols=60  Identities=27%  Similarity=0.380  Sum_probs=50.8

Q ss_pred             EEEEEEEECCCCCCC-CEEEEEEECCCCEEEEEECCCC-HHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf             899997980044469-8799999779825999974881-57899852898858999999997
Q gi|254780419|r   20 FVRLSGWVHRVRPHG-GIIFLDIRDHYGITQVVANPDS-ACFEIAKSVRSEWVLCIDGLVMS   79 (622)
Q Consensus        20 ~V~i~GwV~~~R~~g-~l~F~~lrD~sG~~Q~v~~~~~-~~~~~~~~l~~esvv~v~G~V~~   79 (622)
T Consensus         1 ev~iIGmV~d~r~TknG~~~~~lED~TG~i~vl~~kd~~~~~~~~~~ll~DeVIGV~G~~s~   62 (79)
T cd04490           1 EVSIIGMVNDVRSTKNGHRIVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVSK   62 (79)
T ss_pred             CEEEEEEECCCEECCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf             96999999332761688789999879998999996893677566752568878999999878