HHsearch alignment for GI: 254780419 and conserved domain: pfam00587
>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T). Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases.
Probab=98.61 E-value=1.2e-07 Score=74.11 Aligned_cols=113 Identities=29% Similarity=0.400 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCC----CCCCCCC---CCCCCCCHHHHHHC-CCCHH----HHHHHHHCCCH-
Q ss_conf 589999999875203651462033211246----4566454---32222210344311-23854----56443310570-
Q gi|254780419|r 144 KRTRIINSMRCRMIAENFIECSTPILTASS----PEGARDF---LVPSRVNQGSFYAL-PQAPQ----QYKQLLMASGF- 210 (622)
Q Consensus 144 ~Rs~i~~~~R~~l~~~gF~EveTP~L~ksT----peGArdF---lVPsR~~~g~fYAL-pQSPQ----lyKQlLmv~G~- 210 (622)
T Consensus 1 l~~~l~~~~~~~~~~~G~~~i~tP~l~~~~~~~~sg~~~~~~~~my~~~d~~~~~l~Lrp~~~~~~~~~~~~~~-~~~~~ 79 (170)
T pfam00587 1 LRNALENFIRDLFKRYGYQEVDTPILEPKELWEGSGHWDDYFDEMYRFKDRGGEELYLRPTAEVGITRLFKNEI-LSYRD 79 (170)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHCCCCCCCHHHEEEEECCCCCEEEEECCCCHHHHHHHHHHC-CCCCC
T ss_conf 97999999999999859989999917567898344776557531256735899768873257458889988620-03235
Q ss_pred --HHHEEEHHHHCCCC-CCC--CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf --23311001103777-665--53800003565410268999999999999999
Q gi|254780419|r 211 --DRYFQIAPCFRDED-PRS--DRLPGEFYQLDMEMSFVEQDDILNTMENVLRG 259 (622)
Q Consensus 211 --dryfqiarcFRdEd-~R~--dRqp~EFTqlD~EmsF~~~edvm~l~E~li~~ 259 (622)
T Consensus 80 lP~r~~~~~~~fR~E~~~~~Gl~R~r-eF~q~d~~~-~~~~e~s~~~~~e~~~~ 131 (170)
T pfam00587 80 LPLKLYQIGPCFRYEARPRRGLGRVR-EFTQVDAEI-FGTPEQSEEEDEELLKL 131 (170)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCEEE-EEEEECEEE-EECCCHHHHHHHHHHHH
T ss_conf 86013306530067777666774367-889804799-96700429999999999