HHsearch alignment for GI: 254780419 and conserved domain: pfam01336
>pfam01336 tRNA_anti OB-fold nucleic acid binding domain. This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.
Probab=98.56 E-value=1.2e-06 Score=67.04 Aligned_cols=74 Identities=35% Similarity=0.540 Sum_probs=62.4
Q ss_pred EEEEEEECCC-CCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 9999798004-446987999997798259999748815789985289885899999999758655588777865999988
Q gi|254780419|r 21 VRLSGWVHRV-RPHGGIIFLDIRDHYGITQVVANPDSACFEIAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSAQ 99 (622)
Q Consensus 21 V~i~GwV~~~-R~~g~l~F~~lrD~sG~~Q~v~~~~~~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~~~~tG~~Ei~~~ 99 (622)
T Consensus 1 v~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~-~~~~~~~~l~~g~~v~v~G~v~~~~~---------~~~~i~~~ 70 (75)
T pfam01336 1 VTVAGRVTSVRRSGGKVAFLTLRDGTGSIQVVLFKE-EAEKLAKKLKEGDVVLVTGKVKKRPG---------GELELVVE 70 (75)
T ss_pred CEEEEEEEEEEECCCCEEEEEEEECCEEEEEEEEHH-HHHHHHHCCCCCCEEEEEEEEEECCC---------CCEEEEEE
T ss_conf 999999995188799989999997993999999523-86888632898989999999999749---------98999998
Q ss_pred EEEEE
Q ss_conf 99995
Q gi|254780419|r 100 KIEIL 104 (622)
Q Consensus 100 ~~~il 104 (622)
T Consensus 71 ~i~~~ 75 (75)
T pfam01336 71 EIEVL 75 (75)
T ss_pred EEEEC
T ss_conf 99979