HHsearch alignment for GI: 254780419 and conserved domain: pfam01409

>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.
Probab=99.08  E-value=1.4e-09  Score=87.99  Aligned_cols=87  Identities=30%  Similarity=0.473  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCC--------CCCC--CCCCCCCCCCCCHHHHHH----------CC--CCHHHHH
Q ss_conf             899999998752036514620332112--------4645--664543222221034431----------12--3854564
Q gi|254780419|r  145 RTRIINSMRCRMIAENFIECSTPILTA--------SSPE--GARDFLVPSRVNQGSFYA----------LP--QAPQQYK  202 (622)
Q Consensus       145 Rs~i~~~~R~~l~~~gF~EveTP~L~k--------sTpe--GArdFlVPsR~~~g~fYA----------Lp--QSPQlyK  202 (622)
T Consensus        19 i~~~~~~i~~~f~~~GF~~~~g~eves~~~NFDaLn~P~dHPaR~-------~~DTfy~~~~~~~~~~vLRtHTS~~q~r   91 (243)
T pfam01409        19 LTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQDHPARD-------MQDTFYLKKPLKARRLLLRTHTTPVQAR   91 (243)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCC-------CCCEEEECCCCCCCCEEECCCCCHHHHH
T ss_conf             999999999999877986876983564277777557898898767-------6760343366667686576879889999


Q ss_pred             HHHHCCC-HHHHEEEHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf             4331057-023311001103777665538000035654
Q gi|254780419|r  203 QLLMASG-FDRYFQIAPCFRDEDPRSDRLPGEFYQLDM  239 (622)
Q Consensus       203 QlLmv~G-~dryfqiarcFRdEd~R~dRqp~EFTqlD~  239 (622)
T Consensus        92 ~l~~~~~~p~r~~~~grvyR~d~~DatH~~-~FhQ~Eg  128 (243)
T pfam01409        92 TLAEKNKPPIKIFSIGRVFRRDQVDATHLP-EFHQVEG  128 (243)
T ss_pred             HHHHCCCCCEEEECCCEEEECCCCCCCCCC-EEEEEEE
T ss_conf             997427998489814313325889843153-1057557