HHsearch alignment for GI: 254780419 and conserved domain: pfam04076
>pfam04076 BOF Bacterial OB fold (BOF) protein. Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localize in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesized for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity.
Probab=93.55 E-value=0.49 Score=26.87 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=52.7
Q ss_pred HHCCHHHCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCC
Q ss_conf 23697998988999979800444698799999779825999974881578998528988589999999975865558877
Q gi|254780419|r 10 GDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFEIAKSVRSEWVLCIDGLVMSRSAETINANI 89 (622)
Q Consensus 10 g~l~~~~~g~~V~i~GwV~~~R~~g~l~F~~lrD~sG~~Q~v~~~~~~~~~~~~~l~~esvv~v~G~V~~r~~~~~n~~~ 89 (622)
T Consensus 49 ~~a~~~~Dd~~V~L~G~Iv~~l~~d~---Y~F~D~TG~I~VeId~~--~w~-G~~v~p~~kVrI~GevDk~~----~--- 115 (126)
T pfam04076 49 KQAKSAADDAWVSLEGNIVRQIGDDE---YEFRDASGTIKVDIDDR--VWN-GQEVQPKDKVKITGEVDKDL----N--- 115 (126)
T ss_pred HHHHHCCCCCCEEEEEEEEEEECCCE---EEEECCCCCEEEEECHH--HCC-CCCCCCCCEEEEEEEECCCC----C---
T ss_conf 98865879993999889996848953---89978996399996888--838-98179999899999994788----8---
Q ss_pred CCCEEEEEEEEEE
Q ss_conf 7865999988999
Q gi|254780419|r 90 ITGQIELSAQKIE 102 (622)
Q Consensus 90 ~tG~~Ei~~~~~~ 102 (622)
T Consensus 116 ---~~eIdV~~I~ 125 (126)
T pfam04076 116 ---KAEIDVKFIE 125 (126)
T ss_pred ---CEEEEEEEEE
T ss_conf ---7179888876