BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(622 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 622
Score = 1291 bits (3341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/622 (100%), Positives = 622/622 (100%)
Query: 1 MHRYRTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFE 60
MHRYRTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFE
Sbjct: 1 MHRYRTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFE 60
Query: 61 IAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREY 120
IAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREY
Sbjct: 61 IAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREY 120
Query: 121 PESIRFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARDF 180
PESIRFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARDF
Sbjct: 121 PESIRFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARDF 180
Query: 181 LVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDME 240
LVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDME
Sbjct: 181 LVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDME 240
Query: 241 MSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMH 300
MSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMH
Sbjct: 241 MSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMH 300
Query: 301 NVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIF 360
NVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIF
Sbjct: 301 NVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIF 360
Query: 361 WRLDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHI 420
WRLDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHI
Sbjct: 361 WRLDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHI 420
Query: 421 AQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAF 480
AQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAF
Sbjct: 421 AQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAF 480
Query: 481 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIA 540
QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIA
Sbjct: 481 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIA 540
Query: 541 AGIDRIVMLLLGAKNVREVSLFPMSQNFCDLLMGSPSTVSVEQLRELGLRIVENPKKILK 600
AGIDRIVMLLLGAKNVREVSLFPMSQNFCDLLMGSPSTVSVEQLRELGLRIVENPKKILK
Sbjct: 541 AGIDRIVMLLLGAKNVREVSLFPMSQNFCDLLMGSPSTVSVEQLRELGLRIVENPKKILK 600
Query: 601 ISVTTILRNVYGLKIIHSITLL 622
ISVTTILRNVYGLKIIHSITLL
Sbjct: 601 ISVTTILRNVYGLKIIHSITLL 622
>gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 502
Score = 57.0 bits (136), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 20 FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFEIAKSVRSEWVLCIDGLVMS 79
+ ++G V+ R G +F+DI D G Q+ + D+A + S+ +L + +
Sbjct: 62 MITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQD------SQNLLSMIDIGDI 113
Query: 80 RSAETINANIITGQIELSAQKIEILSVA-EELPLPVFGEREYPESIRFKYRFLDLRRDTL 138
G++ ++AQKI +LS A +P +G + IR++ R+LD+ ++
Sbjct: 114 IGITGQVRRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDV--EIRYRKRYLDIISNSD 171
Query: 139 HK-NIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARD-FLVPSRVNQGSFYALPQ 196
K +R+ +I+ +R M + F+E TPIL D F + + Y L
Sbjct: 172 SKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMY-LRI 230
Query: 197 APQQYKQLLMASGF-DRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNTMEN 255
AP+ Y + ++ SG D+ F++ FR+E S P EF ++ ++ + D++ +E+
Sbjct: 231 APELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNP-EFTMIEAYWAYTDYRDMMKLVED 289
Query: 256 V 256
+
Sbjct: 290 L 290
Score = 49.3 bits (116), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 481 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYR--------AFQCG 532
+++ CNG+EI N SE+ + + ++V ++ G + A G
Sbjct: 405 RFETYCNGWEIC-----NAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYG 459
Query: 533 MPPHGGIAAGIDRIVMLLLGAKNVREVSLFP 563
MPP G+ GIDR++MLL A ++R+V LFP
Sbjct: 460 MPPASGLGLGIDRLIMLLTNAPSIRDVILFP 490
>gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 355
Score = 42.4 bits (98), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 533 MPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQN 567
MP GIA G DR+VML+ GA N+ EV P SQ+
Sbjct: 316 MPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQS 350
>gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 366
Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 525 LYRAFQCGMPPHGGIAAGIDRIVMLLLGAKNVRE 558
+Y+ F GM G+DRI ML G +VRE
Sbjct: 314 IYQGFAWGM--------GLDRIAMLKYGMPDVRE 339
>gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 433
Score = 26.2 bits (56), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 474 LLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENR 521
+L+ +A L GF+I SGG NH+ V L++ G E + R
Sbjct: 297 VLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGR 344
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 25.0 bits (53), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 3/150 (2%)
Query: 436 WIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCN-GFEIASG 494
W++ P+ + ++ +K +DFA G+E +K ++ A Q ++ N G +
Sbjct: 314 WLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVK-ERIIEYLAVQMRVIKNKGLILCFV 372
Query: 495 GIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAK 554
G + Q+ + ++ V GG+Y I + RI+ L AK
Sbjct: 373 GPPGVGKTSLAQSIAK-ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAK 431
Query: 555 NVREVSLFPMSQNFCDLLMGSPSTVSVEQL 584
+ L L G PS +E L
Sbjct: 432 RSNPLLLLDEIDKMGSDLRGDPSAALLEVL 461
>gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 86
Score = 24.6 bits (52), Expect = 5.3, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 578 TVSVEQLR-ELGLRIVENPKKILKIS--VTTILRNVYGLKIIHSI 619
++ + ++R E+GLR +PKK LK S ++TI+ ++I+++
Sbjct: 13 SMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNL 57
>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Length = 404
Score = 23.9 bits (50), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 83 ETINANIITGQIELSAQKIEILSV--------AEELPLPVF 115
+ IN N++ IEL +K+EI+S+ E+ LP++
Sbjct: 187 DEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIY 227
>gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 281
Score = 23.9 bits (50), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 229 RLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGT 288
LPG+ LD++ F+E +NT + ++ N T + +I + R+ +
Sbjct: 82 HLPGD--DLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFAS 139
Query: 289 DKPDLRNPII 298
+ +L P+I
Sbjct: 140 QRLELEEPLI 149
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.324 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,170
Number of Sequences: 1233
Number of extensions: 16977
Number of successful extensions: 54
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 12
length of query: 622
length of database: 328,796
effective HSP length: 79
effective length of query: 543
effective length of database: 231,389
effective search space: 125644227
effective search space used: 125644227
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 41 (20.4 bits)