BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (622 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 1291 bits (3341), Expect = 0.0, Method: Compositional matrix adjust. Identities = 622/622 (100%), Positives = 622/622 (100%) Query: 1 MHRYRTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFE 60 MHRYRTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFE Sbjct: 1 MHRYRTHSCGDLGVSDVGSFVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFE 60 Query: 61 IAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREY 120 IAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREY Sbjct: 61 IAKSVRSEWVLCIDGLVMSRSAETINANIITGQIELSAQKIEILSVAEELPLPVFGEREY 120 Query: 121 PESIRFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARDF 180 PESIRFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARDF Sbjct: 121 PESIRFKYRFLDLRRDTLHKNIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARDF 180 Query: 181 LVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDME 240 LVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDME Sbjct: 181 LVPSRVNQGSFYALPQAPQQYKQLLMASGFDRYFQIAPCFRDEDPRSDRLPGEFYQLDME 240 Query: 241 MSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMH 300 MSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMH Sbjct: 241 MSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGTDKPDLRNPIIMH 300 Query: 301 NVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIF 360 NVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIF Sbjct: 301 NVTEHFVHSEFRVFSKILSVNPGYEVWAIPAKGGGGNRAFCDRMNEWARSQGQPGLAYIF 360 Query: 361 WRLDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHI 420 WRLDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHI Sbjct: 361 WRLDESGNVAGMGPVAKHLNIVNTEAIRVRLDMQDGDSCFFIAGDPLKFCSFAADARNHI 420 Query: 421 AQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAF 480 AQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAF Sbjct: 421 AQELGIINCNCFEFCWIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAF 480 Query: 481 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIA 540 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIA Sbjct: 481 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIA 540 Query: 541 AGIDRIVMLLLGAKNVREVSLFPMSQNFCDLLMGSPSTVSVEQLRELGLRIVENPKKILK 600 AGIDRIVMLLLGAKNVREVSLFPMSQNFCDLLMGSPSTVSVEQLRELGLRIVENPKKILK Sbjct: 541 AGIDRIVMLLLGAKNVREVSLFPMSQNFCDLLMGSPSTVSVEQLRELGLRIVENPKKILK 600 Query: 601 ISVTTILRNVYGLKIIHSITLL 622 ISVTTILRNVYGLKIIHSITLL Sbjct: 601 ISVTTILRNVYGLKIIHSITLL 622 >gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 57.0 bits (136), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 16/241 (6%) Query: 20 FVRLSGWVHRVRPHGGIIFLDIRDHYGITQVVANPDSACFEIAKSVRSEWVLCIDGLVMS 79 + ++G V+ R G +F+DI D G Q+ + D+A + S+ +L + + Sbjct: 62 MITVAGRVYSSRNSG--MFMDIHDASGKIQIFTHKDTADQD------SQNLLSMIDIGDI 113 Query: 80 RSAETINANIITGQIELSAQKIEILSVA-EELPLPVFGEREYPESIRFKYRFLDLRRDTL 138 G++ ++AQKI +LS A +P +G + IR++ R+LD+ ++ Sbjct: 114 IGITGQVRRTKRGELTVNAQKIIMLSKALNSIPETYYGLSDV--EIRYRKRYLDIISNSD 171 Query: 139 HK-NIVKRTRIINSMRCRMIAENFIECSTPILTASSPEGARD-FLVPSRVNQGSFYALPQ 196 K +R+ +I+ +R M + F+E TPIL D F + + Y L Sbjct: 172 SKIRFQQRSLLISQIRHFMEKKGFMEVETPILQPIYGGATADPFKTHHNILKADMY-LRI 230 Query: 197 APQQYKQLLMASGF-DRYFQIAPCFRDEDPRSDRLPGEFYQLDMEMSFVEQDDILNTMEN 255 AP+ Y + ++ SG D+ F++ FR+E S P EF ++ ++ + D++ +E+ Sbjct: 231 APELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNP-EFTMIEAYWAYTDYRDMMKLVED 289 Query: 256 V 256 + Sbjct: 290 L 290 Score = 49.3 bits (116), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 13/91 (14%) Query: 481 QYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENRFGGLYR--------AFQCG 532 +++ CNG+EI N SE+ + + ++V ++ G + A G Sbjct: 405 RFETYCNGWEIC-----NAFSELNDPVEQRIRMEQQVEQSHQRGEHTILDEDFLDAMTYG 459 Query: 533 MPPHGGIAAGIDRIVMLLLGAKNVREVSLFP 563 MPP G+ GIDR++MLL A ++R+V LFP Sbjct: 460 MPPASGLGLGIDRLIMLLTNAPSIRDVILFP 490 >gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 42.4 bits (98), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 23/35 (65%) Query: 533 MPPHGGIAAGIDRIVMLLLGAKNVREVSLFPMSQN 567 MP GIA G DR+VML+ GA N+ EV P SQ+ Sbjct: 316 MPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQS 350 >gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 366 Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 8/34 (23%) Query: 525 LYRAFQCGMPPHGGIAAGIDRIVMLLLGAKNVRE 558 +Y+ F GM G+DRI ML G +VRE Sbjct: 314 IYQGFAWGM--------GLDRIAMLKYGMPDVRE 339 >gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 433 Score = 26.2 bits (56), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 474 LLSIKAFQYDLVCNGFEIASGGIRNHMSEVMLQAFSNVGISKEVVENR 521 +L+ +A L GF+I SGG NH+ V L++ G E + R Sbjct: 297 VLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGR 344 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 25.0 bits (53), Expect = 4.0, Method: Compositional matrix adjust. Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 3/150 (2%) Query: 436 WIMDFPFYEWNEEEKKIDFAHNPFTMPQGGMESLKGNDLLSIKAFQYDLVCN-GFEIASG 494 W++ P+ + ++ +K +DFA G+E +K ++ A Q ++ N G + Sbjct: 314 WLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVK-ERIIEYLAVQMRVIKNKGLILCFV 372 Query: 495 GIRNHMSEVMLQAFSNVGISKEVVENRFGGLYRAFQCGMPPHGGIAAGIDRIVMLLLGAK 554 G + Q+ + ++ V GG+Y I + RI+ L AK Sbjct: 373 GPPGVGKTSLAQSIAK-ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAK 431 Query: 555 NVREVSLFPMSQNFCDLLMGSPSTVSVEQL 584 + L L G PS +E L Sbjct: 432 RSNPLLLLDEIDKMGSDLRGDPSAALLEVL 461 >gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62] Length = 86 Score = 24.6 bits (52), Expect = 5.3, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 3/45 (6%) Query: 578 TVSVEQLR-ELGLRIVENPKKILKIS--VTTILRNVYGLKIIHSI 619 ++ + ++R E+GLR +PKK LK S ++TI+ ++I+++ Sbjct: 13 SMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNL 57 >gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 23.9 bits (50), Expect = 7.4, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%) Query: 83 ETINANIITGQIELSAQKIEILSV--------AEELPLPVF 115 + IN N++ IEL +K+EI+S+ E+ LP++ Sbjct: 187 DEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIY 227 >gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 23.9 bits (50), Expect = 7.4, Method: Compositional matrix adjust. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 229 RLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGT 288 LPG+ LD++ F+E +NT + ++ N T + +I + R+ + Sbjct: 82 HLPGD--DLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFAS 139 Query: 289 DKPDLRNPII 298 + +L P+I Sbjct: 140 QRLELEEPLI 149 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.140 0.430 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 406,170 Number of Sequences: 1233 Number of extensions: 16977 Number of successful extensions: 54 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 12 length of query: 622 length of database: 328,796 effective HSP length: 79 effective length of query: 543 effective length of database: 231,389 effective search space: 125644227 effective search space used: 125644227 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 41 (20.4 bits)