HHsearch alignment for GI: 254780420 and conserved domain: CHL00197

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional.
Probab=100.00  E-value=0  Score=1131.69  Aligned_cols=376  Identities=43%  Similarity=0.706  Sum_probs=351.4

Q ss_pred             CCCCEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCE
Q ss_conf             78966899728987999975676248888985378888760141614256173216897368458823420465333210
Q gi|254780420|r   10 KKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKG   89 (396)
Q Consensus        10 ~~~~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~   89 (396)
T Consensus         4 ~~~~A~LvLedG~~f~G~~fG~~~~~~GEvVFnT~MtGYqE~lTDPSY~gQIl~fTyP~IGNyGin~~d~ES----~~i~   79 (383)
T CHL00197          4 KMIPAILVLEDGTVYRGWSFSNPITSIGEVVFNTGMTGYQEIMTDPSYNEQIVTFTYPEIGNTGINLDDIES----VKIQ   79 (383)
T ss_pred             CCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCHHCCC----CCCC
T ss_conf             567689996699989879748777677899997997876820058452344022166773460799212035----6764


Q ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             23666404654434552417989999742783211257689999998539842366327654589789888774158874
Q gi|254780420|r   90 AVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLK  169 (396)
Q Consensus        90 ~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~  169 (396)
T Consensus        80 ~~G~Ivre~~~~~Sn~rs~~sL~~wL~~~~IpgI~gIDTRaLTk~IR~~G~m~g~I~~~---~~~~~~l~~~~~~~~~~~  156 (383)
T CHL00197         80 IKGIIAKNISPSSSNWRSQESLVSYLKRHKIPFIFGIDTRALVRHLRRFGTMNGCISNQ---NLNLSYLEAKIKELPSME  156 (383)
T ss_pred             EEEEEECCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHCCCCC
T ss_conf             68999456667888532115899999975986264787899999999649824999079---899899999987489965


Q ss_pred             CCCHHHCCCCCCCEECCCCCCCCCC--CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCC
Q ss_conf             3210110133332111686534454--34434677777149999679641023222220245413304657446441357
Q gi|254780420|r  170 GAELAKHVTVSQRRDWSEKIWKWGE--ETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQP  247 (396)
Q Consensus       170 ~~dL~~~Vs~~~~~~~~~~~~~~~~--~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~p  247 (396)
T Consensus       157 ~~dLv~~VSt~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~VvviD~GiK~nILr~L~~~g~~v~VvP~~~~~~~I~~~~P  236 (383)
T CHL00197        157 GLDLAPSVTTSSYYEWDEPSHPKWFYLADNKRPHSSYPLRIIVIDFGVKYNILRRLKSFGCEITIVPATSTYQDIMAYQP  236 (383)
T ss_pred             CCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHCCCC
T ss_conf             78542485168877706887654321343444588887459999677718899999978998999899985113425688


Q ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHCC-CCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCC
Q ss_conf             8899858888841011211012221025-786347861005887875285446677675210112347789709996145
Q gi|254780420|r  248 DGVLLSNGPGDPAVTSVYSSPIICKLVD-SGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMN  326 (396)
Q Consensus       248 dgi~lSnGPGdP~~~~~~~~~~~~~~~~-~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqN  326 (396)
T Consensus       237 DGIfLSNGPGDP~~~~~-~i~~i~~li~~~~iPifGICLGHQlLalA~GakT~KmkfGHrG~NhPV~--~t~kv~ITSQN  313 (383)
T CHL00197        237 DGILLSNGPGDPSTVHY-GIKTVKKLIKKANIPIFGICMGHQILSLALEAKTFKLKFGHRGLNHPSG--LNQQVEITSQN  313 (383)
T ss_pred             CEEEECCCCCCHHHHHH-HHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCCCCCCC--CCCCEEEEECC
T ss_conf             88997899999789899-9999999996489978995588999999739837566888779886601--58757996278


Q ss_pred             CCEEEEHHHCCCC-CEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             7615703436998-28999988998087268679977898348788776700168999999999973578
Q gi|254780420|r  327 HGFAIDASSLPAG-LEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTM  395 (396)
Q Consensus       327 Hg~~v~~~slp~~-~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~~  395 (396)
T Consensus       314 HGyaVd~~sl~~~~~~vt~~nlnD~tvEG~~~~~~p~fsvQfHPEa~pGP~Ds~~lF~~F~~~~~~~k~~  383 (383)
T CHL00197        314 HGFAVNAESLAKNKVYVTHFNLNDGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIMKHSKSS  383 (383)
T ss_pred             CCEEECCCCCCCCCCEEEEECCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             7617674447887318999938889614869889987887748898989873088999999999976189