HHsearch alignment for GI: 254780420 and conserved domain: CHL00197
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional.
Probab=100.00 E-value=0 Score=1131.69 Aligned_cols=376 Identities=43% Similarity=0.706 Sum_probs=351.4
Q ss_pred CCCCEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCE
Q ss_conf 78966899728987999975676248888985378888760141614256173216897368458823420465333210
Q gi|254780420|r 10 KKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKG 89 (396)
Q Consensus 10 ~~~~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~ 89 (396)
T Consensus 4 ~~~~A~LvLedG~~f~G~~fG~~~~~~GEvVFnT~MtGYqE~lTDPSY~gQIl~fTyP~IGNyGin~~d~ES----~~i~ 79 (383)
T CHL00197 4 KMIPAILVLEDGTVYRGWSFSNPITSIGEVVFNTGMTGYQEIMTDPSYNEQIVTFTYPEIGNTGINLDDIES----VKIQ 79 (383)
T ss_pred CCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCHHCCC----CCCC
T ss_conf 567689996699989879748777677899997997876820058452344022166773460799212035----6764
Q ss_pred EEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 23666404654434552417989999742783211257689999998539842366327654589789888774158874
Q gi|254780420|r 90 AVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLK 169 (396)
Q Consensus 90 ~~g~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~ 169 (396)
T Consensus 80 ~~G~Ivre~~~~~Sn~rs~~sL~~wL~~~~IpgI~gIDTRaLTk~IR~~G~m~g~I~~~---~~~~~~l~~~~~~~~~~~ 156 (383)
T CHL00197 80 IKGIIAKNISPSSSNWRSQESLVSYLKRHKIPFIFGIDTRALVRHLRRFGTMNGCISNQ---NLNLSYLEAKIKELPSME 156 (383)
T ss_pred EEEEEECCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHCCCCC
T ss_conf 68999456667888532115899999975986264787899999999649824999079---899899999987489965
Q ss_pred CCCHHHCCCCCCCEECCCCCCCCCC--CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCC
Q ss_conf 3210110133332111686534454--34434677777149999679641023222220245413304657446441357
Q gi|254780420|r 170 GAELAKHVTVSQRRDWSEKIWKWGE--ETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQP 247 (396)
Q Consensus 170 ~~dL~~~Vs~~~~~~~~~~~~~~~~--~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~p 247 (396)
T Consensus 157 ~~dLv~~VSt~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~VvviD~GiK~nILr~L~~~g~~v~VvP~~~~~~~I~~~~P 236 (383)
T CHL00197 157 GLDLAPSVTTSSYYEWDEPSHPKWFYLADNKRPHSSYPLRIIVIDFGVKYNILRRLKSFGCEITIVPATSTYQDIMAYQP 236 (383)
T ss_pred CCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCHHHCCCC
T ss_conf 78542485168877706887654321343444588887459999677718899999978998999899985113425688
Q ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHCC-CCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCC
Q ss_conf 8899858888841011211012221025-786347861005887875285446677675210112347789709996145
Q gi|254780420|r 248 DGVLLSNGPGDPAVTSVYSSPIICKLVD-SGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMN 326 (396)
Q Consensus 248 dgi~lSnGPGdP~~~~~~~~~~~~~~~~-~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqN 326 (396)
T Consensus 237 DGIfLSNGPGDP~~~~~-~i~~i~~li~~~~iPifGICLGHQlLalA~GakT~KmkfGHrG~NhPV~--~t~kv~ITSQN 313 (383)
T CHL00197 237 DGILLSNGPGDPSTVHY-GIKTVKKLIKKANIPIFGICMGHQILSLALEAKTFKLKFGHRGLNHPSG--LNQQVEITSQN 313 (383)
T ss_pred CEEEECCCCCCHHHHHH-HHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCCCCCCC--CCCCEEEEECC
T ss_conf 88997899999789899-9999999996489978995588999999739837566888779886601--58757996278
Q ss_pred CCEEEEHHHCCCC-CEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 7615703436998-28999988998087268679977898348788776700168999999999973578
Q gi|254780420|r 327 HGFAIDASSLPAG-LEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKTM 395 (396)
Q Consensus 327 Hg~~v~~~slp~~-~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~~ 395 (396)
T Consensus 314 HGyaVd~~sl~~~~~~vt~~nlnD~tvEG~~~~~~p~fsvQfHPEa~pGP~Ds~~lF~~F~~~~~~~k~~ 383 (383)
T CHL00197 314 HGFAVNAESLAKNKVYVTHFNLNDGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIMKHSKSS 383 (383)
T ss_pred CCEEECCCCCCCCCCEEEEECCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 7617674447887318999938889614869889987887748898989873088999999999976189