HHsearch alignment for GI: 254780420 and conserved domain: PRK12564
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed.
Probab=100.00 E-value=0 Score=1114.10 Aligned_cols=352 Identities=55% Similarity=0.932 Sum_probs=339.6
Q ss_pred CEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCEEEE
Q ss_conf 66899728987999975676248888985378888760141614256173216897368458823420465333210236
Q gi|254780420|r 13 TAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAVG 92 (396)
Q Consensus 13 ~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~~~g 92 (396)
T Consensus 4 ka~LiLedGt~f~G~~fG~~~~~~GEvVFnT~MtGYqE~lTDPSY~gQIl~fTyP~IGNyGv~~~d~ES----~~~~~~G 79 (355)
T PRK12564 4 KAYLVLEDGTVFEGKAFGAEGETVGEVVFNTSMTGYQEILTDPSYAGQIVTFTYPLIGNYGVNREDFES----DRIHAKG 79 (355)
T ss_pred CEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCHHHHCC----CCCCEEE
T ss_conf 379995699999889807776578899997998765700228776673000077675153889457155----6755106
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 66404654434552417989999742783211257689999998539842366327654589789888774158874321
Q gi|254780420|r 93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAE 172 (396)
Q Consensus 93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~d 172 (396)
T Consensus 80 ~Iv~e~~~~~s~~~s~~sL~~~L~~~~IpgI~gVDTRaLtr~iR~~G~m~g~I~~~~-----~~~~~~~~~~~~~~~~~d 154 (355)
T PRK12564 80 LIVRELSRIPSNWRSEMSLDDYLKEHGIPGISGIDTRALTRKLREKGAMNGVIATGD-----LEDLLEKARAFPGLEGLD 154 (355)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHCCCEEEEEECCC-----HHHHHHHHHHCCCCCCCC
T ss_conf 884146778884011069999999779842852538999999986598059994598-----599999998278964566
Q ss_pred HHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEE
Q ss_conf 01101333321116865344543443467777714999967964102322222024541330465744644135788998
Q gi|254780420|r 173 LAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLL 252 (396)
Q Consensus 173 L~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~l 252 (396)
T Consensus 155 lv~~VS~~~~~~~~----------------~~~~~V~viD~GvK~nIlr~L~~rg~~v~VvP~~~~~~~I~~~~pDGIfl 218 (355)
T PRK12564 155 LAKEVSTKEPYPWP----------------GGGYHVVAIDFGVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFL 218 (355)
T ss_pred CHHHCCCCCCEECC----------------CCCEEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCEEEE
T ss_conf 55132767767727----------------99718999937873889999998798699968978765764148888996
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEE
Q ss_conf 58888841011211012221025786347861005887875285446677675210112347789709996145761570
Q gi|254780420|r 253 SNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAID 332 (396)
Q Consensus 253 SnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v~ 332 (396)
T Consensus 219 SNGPGDP~~~~-~~i~~ik~li~~~~PifGICLGHQllalA~Ga~t~Km~fGHrG~NhPV~~l~t~~v~iTSQNHGyaVd 297 (355)
T PRK12564 219 SNGPGDPAALD-YAIEMIKELLEGKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLETGKVEITSQNHGFAVD 297 (355)
T ss_pred CCCCCCHHHHH-HHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCEECCCCCCCCCCCCCCEECCCCEEEEEECCCCEEEC
T ss_conf 79999968879-99999999852698789988879999997198442055565789977335578739997167422866
Q ss_pred HHHCCCCCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3436998289999889980872686799778983487887767001689999999999
Q gi|254780420|r 333 ASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMH 390 (396)
Q Consensus 333 ~~slp~~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~ 390 (396)
T Consensus 298 ~~sl~~~~~vt~~nlnDgtvEGi~h~~~p~fSVQfHPEa~pGP~D~~~lFd~F~~~i~ 355 (355)
T PRK12564 298 EDSLPENLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEASPGPHDAAYLFDEFVELME 355 (355)
T ss_pred CCCCCCCEEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 6658987399999389996721788899878972188999899753889999999759