HHsearch alignment for GI: 254780420 and conserved domain: PRK12838
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed.
Probab=100.00 E-value=0 Score=1096.96 Aligned_cols=353 Identities=41% Similarity=0.716 Sum_probs=327.6
Q ss_pred CEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCEEEE
Q ss_conf 66899728987999975676248888985378888760141614256173216897368458823420465333210236
Q gi|254780420|r 13 TAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAVG 92 (396)
Q Consensus 13 ~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~~~g 92 (396)
T Consensus 2 ka~L~LeDGt~f~G~~fG~~~~~~GEvVFnT~MtGYqE~lTDPSY~gQIv~~TyP~IGNyGvn~~d~ES----~~i~~~G 77 (356)
T PRK12838 2 KAYLILEDGTTFEGELFGAPIDVTGELVFNTGMTGYQEVLTDPSYKGQIIVFTYPLIGNYGINASDYES----KQPTVKG 77 (356)
T ss_pred CEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHCCC----CCCEEEE
T ss_conf 279996799999879707777688999996997876710158651234233166675343889157055----5750428
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 66404654434552417989999742783211257689999998539842366327654589789888774158874321
Q gi|254780420|r 93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAE 172 (396)
Q Consensus 93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~~~~~~~~d~~~~~~~~~~~~~~~~~d 172 (396)
T Consensus 78 ~Ivre~~~~~Sn~rs~~sL~~~L~~~~IpgI~gIDTRaLTr~IR~~G~m~g~I~~~~~~-~~~~~~~------~~~~~~~ 150 (356)
T PRK12838 78 VIVYEAAREGSHYRAKQSLDDYLKEKNIPGISGVDTRALVKHLREKGTMKASITTTDDE-HAFDQIQ------ALVLPFN 150 (356)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEEEECCCCC-CCHHHCC------CCCCCCC
T ss_conf 99513578888555647999999976985274464899999998658814899358876-6500101------4112456
Q ss_pred HHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEE
Q ss_conf 01101333321116865344543443467777714999967964102322222024541330465744644135788998
Q gi|254780420|r 173 LAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLL 252 (396)
Q Consensus 173 L~~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIvvIDfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~l 252 (396)
T Consensus 151 ~~~~vs~~~~~~~----------------~~~~~~V~viD~GvK~nIlr~L~~rg~~V~VvP~~~~~~~i~~~~pDGifl 214 (356)
T PRK12838 151 VQAVVSTKEPYAA----------------GNGGKHVALIDFGLKHSILRSLSKRGCNVTVLPYNASLEDIKNLNPDGIVL 214 (356)
T ss_pred CCEEEECCCCEEC----------------CCCCEEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCEEEE
T ss_conf 6348955764887----------------999757999958836999999997898899989988754023249748994
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEE
Q ss_conf 58888841011211012221025786347861005887875285446677675210112347789709996145761570
Q gi|254780420|r 253 SNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAID 332 (396)
Q Consensus 253 SnGPGdP~~~~~~~~~~~~~~~~~~iPilGIClGhQ~l~~a~G~~~~kl~~GhrG~N~Pv~~~~t~kv~iTsqNHg~~v~ 332 (396)
T Consensus 215 SNGPGDP~~~~~-~i~~vr~l~-~~~PifGICLGHQllalA~Gakt~KmkfGHrG~NhPV~~~~tgkv~ITSQNHGyaVd 292 (356)
T PRK12838 215 SNGPGDPKELQP-YLPTIKDLA-SSYPILGICLGHQLIALALGAETYKLPFGHRGANHPVIDLATGRVWMTSQNHGYVVD 292 (356)
T ss_pred CCCCCCHHHHHH-HHHHHHHHH-CCCCEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCCEECCCCCEEEEECCCCCEEC
T ss_conf 389989688788-999999997-498889974889999997097486415566887826477689948997268761677
Q ss_pred HHHCCC-CCEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 343699-82899998899808726867997789834878877670016899999999997357
Q gi|254780420|r 333 ASSLPA-GLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFIDFMHKRKT 394 (396)
Q Consensus 333 ~~slp~-~~~v~~~~~nD~tiegi~~~~~~~~~vQfHPEa~PGP~D~~~~F~~F~~~i~~~k~ 394 (396)
T Consensus 293 ~~sl~~~~~~vt~~nlnD~tveGi~~~~~p~fsVQfHPEa~PGP~D~~~lF~~F~~~~~~~k~ 355 (356)
T PRK12838 293 EDSIDEKQLSVTFFNLNDGSIEGLRHKKLPVLSVQFHPEAHPGPHDAEYIFDEFLEMMGEARR 355 (356)
T ss_pred CCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 676898865999990899966107988998688712889998987438899999999998736