HHsearch alignment for GI: 254780420 and conserved domain: cd01750
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=97.91 E-value=0.00018 Score=52.09 Aligned_cols=66 Identities=26% Similarity=0.429 Sum_probs=42.1
Q ss_pred HHHH-HHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCC-------CHHHHHHHCCCCCCEEEEECHHHHHHH
Q ss_conf 2222-20245413304657446441357889985888884101121-------101222102578634786100588787
Q gi|254780420|r 221 RVLS-SLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY-------SSPIICKLVDSGMPMFGICLGHQLLGL 292 (396)
Q Consensus 221 r~L~-~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~-------~~~~~~~~~~~~iPilGIClGhQ~l~~ 292 (396)
T Consensus 16 ~~l~~~~~v~v~~v~~~---~~l--~~~D~iIl---PGsK~t~~DL~~l~~~Gl~~~i~~~~~~g~~vlgICGGyQmLG~ 87 (194)
T cd01750 16 DPLAREPGVDVRYVEVP---EGL--GDADLIIL---PGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGK 87 (194)
T ss_pred HHHHCCCCCEEEEECCC---CCC--CCCCEEEE---CCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECHHHHHHHC
T ss_conf 77600699389996797---764--66999998---99883899999998749799999999759978997365673000
Q ss_pred HC
Q ss_conf 52
Q gi|254780420|r 293 AL 294 (396)
Q Consensus 293 a~ 294 (396)
T Consensus 88 ~i 89 (194)
T cd01750 88 YI 89 (194)
T ss_pred EE
T ss_conf 35