HHsearch alignment for GI: 254780420 and conserved domain: cd03128
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=96.86 E-value=0.0012 Score=46.33 Aligned_cols=73 Identities=30% Similarity=0.538 Sum_probs=50.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCHH--HHHHCCCCEEEECCCCCCCCCCC--CCCHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf 02322222024541330465744--64413578899858888841011--211012221025786347861005887
Q gi|254780420|r 218 NLLRVLSSLGCRITIVGAETSYK--DIMSLQPDGVLLSNGPGDPAVTS--VYSSPIICKLVDSGMPMFGICLGHQLL 290 (396)
Q Consensus 218 nIlr~L~~~g~~v~Vvp~~~~~~--~i~~~~pdgi~lSnGPGdP~~~~--~~~~~~~~~~~~~~iPilGIClGhQ~l 290 (396)
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vii~gg~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~G~~~l 92 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCEEEECCCCCCCCCCHHCHHHHHHHHHHHHCCCEEEEECCHHHHC
T ss_conf 99999997799799995389964453686458899978998664210109899999999998799799999047539