HHsearch alignment for GI: 254780420 and conserved domain: cd03130
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=95.37 E-value=0.11 Score=32.63 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=51.0
Q ss_pred ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCC------CHHHHHHHCCCCCCEEEEEC
Q ss_conf 679641023222220245413304657446441357889985888884101121------10122210257863478610
Q gi|254780420|r 212 DYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY------SSPIICKLVDSGMPMFGICL 285 (396)
Q Consensus 212 DfGiK~nIlr~L~~~g~~v~Vvp~~~~~~~i~~~~pdgi~lSnGPGdP~~~~~~------~~~~~~~~~~~~iPilGICl 285 (396)
T Consensus 10 ~FyY~en-l~~L~~~Gaelv~FSPl~--d~~lP-~~d~lylgG--GyPE~~a~~Ls~N~~~~~~ir~~~~~G~PiyAECG 83 (198)
T cd03130 10 NFYYPEN-LELLEAAGAELVPFSPLK--DEELP-DADGLYLGG--GYPELFAEELSANQSMRESIRAFAESGGPIYAECG 83 (198)
T ss_pred CEECHHH-HHHHHHCCCEEEEECCCC--CCCCC-CCCEEECCC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECH
T ss_conf 5557999-999998899789877767--88899-876898279--98758899997679999999999984997799820
Q ss_pred HHHHHHHHCC
Q ss_conf 0588787528
Q gi|254780420|r 286 GHQLLGLALG 295 (396)
Q Consensus 286 GhQ~l~~a~G 295 (396)
T Consensus 84 GlMyL~~~i~ 93 (198)
T cd03130 84 GLMYLGESLD 93 (198)
T ss_pred HHHHHHHHCC
T ss_conf 4888742205