HHsearch alignment for GI: 254780420 and conserved domain: pfam00988
>pfam00988 CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain. The carbamoyl-phosphate synthase domain is in the amino terminus of protein. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00289. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=100.00 E-value=0 Score=433.86 Aligned_cols=130 Identities=54% Similarity=0.843 Sum_probs=127.6
Q ss_pred CEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCEEEE
Q ss_conf 66899728987999975676248888985378888760141614256173216897368458823420465333210236
Q gi|254780420|r 13 TAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAVG 92 (396)
Q Consensus 13 ~A~L~LedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQIlvfT~P~IGNyGvn~~d~ES~~~~~~~~~~g 92 (396)
T Consensus 2 ka~L~LedG~~f~G~~fG~~~~~~GEvvFnT~mtGYqE~lTDPSY~gQIl~fT~P~IGNyGin~~d~ES----~~~~~~G 77 (131)
T pfam00988 2 KAYLVLEDGTVFEGESFGAEGEAVGEVVFNTGMTGYQEILTDPSYAGQIVVFTYPLIGNYGINPEDFES----DKPHAKG 77 (131)
T ss_pred CEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC----CCCCCCE
T ss_conf 379995799999879737776577799997887654403258765774899746640441779743200----4764057
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 664046544345524179899997427832112576899999985398423663
Q gi|254780420|r 93 LVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIA 146 (396)
Q Consensus 93 ~Iv~~~~~~~Sn~rs~~sL~~wL~~~~IpgI~GIDTRaLTk~IRe~G~~~a~I~ 146 (396)
T Consensus 78 ~iv~~~~~~~S~~~s~~sL~~~L~~~~IpgI~gIDTRaLt~~iR~~G~~~~~I~ 131 (131)
T pfam00988 78 LIVRELSDIPSNWRSEESLDEFLKEHGIPGISGVDTRALTRKLREKGAMKGVIS 131 (131)
T ss_pred EEECCCCCCCCCHHHHCCHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCEEEC
T ss_conf 985356657665323359999999779722706618999999986698516849