RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase
small subunit [Candidatus Liberibacter asiaticus str. psy62]
(396 letters)
>gnl|CDD|30851 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino
acid transport and metabolism / Nucleotide transport and
metabolism].
Length = 368
Score = 481 bits (1239), Expect = e-136
Identities = 190/384 (49%), Positives = 240/384 (62%), Gaps = 17/384 (4%)
Query: 11 KPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIG 70
A LVL DG+V EG GA G+ E+ FNTS+TGYQEILTDPSY GQIV FT+P IG
Sbjct: 1 SMKAYLVLEDGTVFEGYSFGAEGTAVGEVVFNTSMTGYQEILTDPSYKGQIVTFTYPLIG 60
Query: 71 NVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRA 130
N GVN EDFES A GLV++ PSN+RA D +LK GI G++GIDTRA
Sbjct: 61 NYGVNDEDFESDRIH----AAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTRA 116
Query: 131 LTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIW 190
LT IR+ G VIA P+ D L ERA+ + G+ G +L K V+ + W
Sbjct: 117 LTRKIREKGAMKGVIATGPE--LDPAKLLERARAFPGILGTDLVKEVSTKEPYTWPG--- 171
Query: 191 KWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGV 250
+ HVV ID+G++ N+LR L GCR+T+V A+TS ++I++L PDG+
Sbjct: 172 -------LNGGGEPGKHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGI 224
Query: 251 LLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNH 310
LSNGPGDPA Y+ I +L+ + +P+FGICLGHQLL LALGA+T KM GH G NH
Sbjct: 225 FLSNGPGDPAPLD-YAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGHRGANH 283
Query: 311 PVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370
PVK++ G V I S NHG+A+D SL L+ TH++L D + G R D P FSVQYHPE
Sbjct: 284 PVKDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPE 343
Query: 371 SSPGPQDSYYLFSTFIDFMHKRKT 394
+SPGP D+ YLF FI+ M K
Sbjct: 344 ASPGPHDTRYLFDEFIELMEAAKK 367
>gnl|CDD|164573 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific
small subunit; Provisional.
Length = 382
Score = 332 bits (852), Expect = 1e-91
Identities = 160/388 (41%), Positives = 221/388 (56%), Gaps = 12/388 (3%)
Query: 8 TIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFP 67
K A+LVL DG+ G + E+ FNT +TGYQEI+TDPSY QIV FT+P
Sbjct: 1 MKKMIPAILVLEDGTYYRGWSFSNPITTIGEVVFNTGMTGYQEIITDPSYFEQIVTFTYP 60
Query: 68 HIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGID 127
IGN G+N ED ES+ + G++ K SN+R ++L+ I + GID
Sbjct: 61 EIGNTGINLEDIESVKIQ----VKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGID 116
Query: 128 TRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSE 187
TRALT +R +G N I++ +L L+ + K + ++L VT S +W E
Sbjct: 117 TRALTQHLRRFGTMNGCISNQ---NLNLSYLRAKIKESPHMPSSDLIPRVTTSSYYEWDE 173
Query: 188 K-IWKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQ 246
K + + S + ++ ID+G++ N+LR L S GC IT+V A + Y+DI+S Q
Sbjct: 174 KSHPSFYLADNKRPHSSYQLKIIVIDFGVKYNILRRLKSFGCSITVVPATSPYQDILSYQ 233
Query: 247 PDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHH 306
PDG+LLSNGPGDP+ Y + KL+ +P+FGIC+GHQ+L LAL A+T K+ GH
Sbjct: 234 PDGILLSNGPGDPSAIH-YGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLKFGHR 292
Query: 307 GVNHPVKNISNGTVEIVSMNHGFAIDASSL-PAGLEETHISLFDSSNCGFRLIDQPVFSV 365
G+NHP N VEI S NHGFA++ SL TH +L D + G +P FSV
Sbjct: 293 GLNHPSG--LNQQVEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKPYFSV 350
Query: 366 QYHPESSPGPQDSYYLFSTFIDFMHKRK 393
QYHPE+SPGP D+ YLF FI+ + K
Sbjct: 351 QYHPEASPGPHDADYLFEYFIEIIKHSK 378
>gnl|CDD|35591 KOG0370, KOG0370, KOG0370, Multifunctional pyrimidine synthesis
protein CAD (includes carbamoyl-phophate synthetase,
aspartate transcarbamylase, and glutamine
amidotransferase) [General function prediction only].
Length = 1435
Score = 303 bits (776), Expect = 7e-83
Identities = 136/386 (35%), Positives = 200/386 (51%), Gaps = 36/386 (9%)
Query: 14 AVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG 73
+ LVL DGSV+ G GA S+ E+ F T + GY E LTDPSY GQI+ FT+P IGN G
Sbjct: 3 STLVLEDGSVLPGYSFGAPKSVAGELVFQTGMVGYPESLTDPSYKGQILVFTYPLIGNYG 62
Query: 74 VNSEDFESISRKNFKG----AVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTR 129
V + + K+F+ GLV+ E S++ A WL+ G+ G+ G+DTR
Sbjct: 63 VPPDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR 122
Query: 130 ALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKI 189
ALT +R+ G ++ + L V+ + + + +
Sbjct: 123 ALTKKLREQGSMLGKLSIEKSPVL-----------FVDPNKRNLVSQVSTKEPKVYGD-- 169
Query: 190 WKWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDG 249
++ ID G++ N +R L G +T+V I + DG
Sbjct: 170 -------------GKSLRILAIDCGLKYNQIRCLVKRGAEVTVVP---WDYPIAKEEYDG 213
Query: 250 VLLSNGPGDPAV-TSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGV 308
+ LSNGPGDP + + + + +L++S +P+FGICLGHQLL LA GA+T KM G+ G
Sbjct: 214 LFLSNGPGDPELCPLLVQN--VRELLESNVPVFGICLGHQLLALAAGAKTYKMKYGNRGH 271
Query: 309 NHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYH 368
N P + G I S NHG+A+D ++LPAG + ++ D SN G +P FSVQ+H
Sbjct: 272 NIPCTCRATGRCFITSQNHGYAVDPATLPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFH 331
Query: 369 PESSPGPQDSYYLFSTFIDFMHKRKT 394
PE++PGP D+ YLF FI+ + K K+
Sbjct: 332 PEATPGPHDTEYLFDVFIELVKKSKS 357
>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent
form of carbamoyl phosphate synthase, CPSase II. This
group of sequences represents the small chain of the
glutamine-dependent form of carbamoyl phosphate
synthase, CPSase II. CPSase II catalyzes the production
of carbomyl phosphate (CP) from bicarbonate, glutamine
and two molecules of MgATP. The reaction is believed to
proceed by a series of four biochemical reactions
involving a minimum of three discrete highly reactive
intermediates. The synthesis of CP is critical for the
initiation of two separate biosynthetic pathways. In one
CP is coupled to aspartate, its carbon and nitrogen
nuclei ultimately incorporated into the aromatic
moieties of pyrimidine nucleotides. In the second
pathway CP is condensed with ornithine at the start of
the urea cycle and is utilized for the detoxification of
ammonia and biosynthesis of arginine. CPSases may be
encoded by one or by several genes, depending on the
species. The E.coli enzyme is a heterodimer consisting
of two polypeptide chains referred to as the small and
large subunit. Ammonia an intermediate during the
biosynthesis of carbomyl phosphate produced by the
hydrolysis of glutamine in the small subunit of the
enzyme is delivered via a molecular tunnel between the
remotely located carboxyphosphate active site in the
large subunit. CPSase IIs belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site. This
group also contains the sequence from the mammalian urea
cycle form which has lost the active site Cys, resulting
in an ammonia-dependent form, CPSase I.
Length = 178
Score = 270 bits (692), Expect = 6e-73
Identities = 97/179 (54%), Positives = 124/179 (69%), Gaps = 1/179 (0%)
Query: 208 VVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSS 267
VV ID+G++ N+LR L GC +T+V T ++I+ L PDG+ LSNGPGDPA+
Sbjct: 1 VVVIDFGVKHNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDEAIK 60
Query: 268 PIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNH 327
+ KL+ +P+FGICLGHQLL LALGA+T KM GH G NHPVK++ G V I S NH
Sbjct: 61 TVR-KLLGKKIPIFGICLGHQLLALALGAKTYKMKFGHRGSNHPVKDLITGRVYITSQNH 119
Query: 328 GFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFI 386
G+A+D SLP GLE TH++L D + G R D PVFSVQ+HPE+SPGP D+ YLF F+
Sbjct: 120 GYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQFHPEASPGPHDTEYLFDEFL 178
>gnl|CDD|144543 pfam00988, CPSase_sm_chain, Carbamoyl-phosphate synthase small
chain, CPSase domain. The carbamoyl-phosphate synthase
domain is in the amino terminus of protein.
Carbamoyl-phosphate synthase catalyses the ATP-dependent
synthesis of carbamyl-phosphate from glutamine or
ammonia and bicarbonate. This important enzyme initiates
both the urea cycle and the biosynthesis of arginine
and/or pyrimidines. The carbamoyl-phosphate synthase
(CPS) enzyme in prokaryotes is a heterodimer of a small
and large chain. The small chain promotes the hydrolysis
of glutamine to ammonia, which is used by the large
chain to synthesize carbamoyl phosphate. See pfam00289.
The small chain has a GATase domain in the carboxyl
terminus. See pfam00117.
Length = 131
Score = 205 bits (524), Expect = 2e-53
Identities = 70/135 (51%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 12 PTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGN 71
A LVL DG+V EG GA G E+ FNT +TGYQEILTDPSY GQIV FT+P IGN
Sbjct: 1 MKAYLVLEDGTVFEGESFGAEGEAVGEVVFNTGMTGYQEILTDPSYAGQIVVFTYPLIGN 60
Query: 72 VGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRAL 131
G+N EDFES A GL+++ PSN+R+ D +LK GI G+SG+DTRAL
Sbjct: 61 YGINPEDFESDKPH----AKGLIVRELSDIPSNWRSEESLDEFLKEHGIPGISGVDTRAL 116
Query: 132 TVWIRDYGVSNSVIA 146
T +R+ G VI+
Sbjct: 117 TRKLREKGAMKGVIS 131
>gnl|CDD|143892 pfam00117, GATase, Glutamine amidotransferase class-I.
Length = 187
Score = 180 bits (460), Expect = 5e-46
Identities = 70/185 (37%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 211 IDYG--IRSNLLRVLSSLGCRITIVGAETSYKDIMSL-QPDGVLLSNGPGDPAVTSVYSS 267
ID G NL R L LG + +V +T ++I+ L PDG+++S GPG P + +
Sbjct: 3 IDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELLNPDGIIISPGPGSPG-DAGGAI 61
Query: 268 PIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNIS-----NGTVEI 322
I +L ++ +P+ GICLGHQLL LA G + +K + HHG N PV + V I
Sbjct: 62 EAIKELRENKIPILGICLGHQLLALAFGGKVIKAKEPHHGKNSPVGHDKGLFYGLPNVFI 121
Query: 323 VSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPESSPGPQDSYYLF 382
V H +A+D +LP GLE T S R + P+F VQ+HPESS P LF
Sbjct: 122 VRRYHSYAVDPDTLPDGLEVTAASDNGGEIMAIRHKENPIFGVQFHPESSLTPGGPELLF 181
Query: 383 STFID 387
+ I
Sbjct: 182 NFLIK 186
>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine
amidotransferase (GATase1) domain found in Anthranilate
synthase. Type 1 glutamine amidotransferase (GATase1)
domain found in Anthranilate synthase (ASase). This
group contains proteins similar to para-aminobenzoate
(PABA) synthase and ASase. These enzymes catalyze
similar reactions and produce similar products, PABA and
ortho-aminobenzoate (anthranilate). Each enzyme is
composed of non-identical subunits: a glutamine
amidotransferase subunit (component II) and a subunit
that produces an aminobenzoate products (component I).
ASase catalyses the synthesis of anthranilate from
chorismate and glutamine and is a tetrameric protein
comprising two copies each of components I and II.
Component II of ASase belongs to the family of triad
GTases which hydrolyze glutamine and transfer nascent
ammonia between the active sites. In some bacteria, such
as Escherichia coli, component II can be much larger
than in other organisms, due to the presence of
phosphoribosyl-anthranilate transferase (PRTase)
activity. PRTase catalyses the second step in tryptophan
biosynthesis and results in the addition of
5-phosphoribosyl-1-pyrophosphate to anthranilate to
create N-5'-phosphoribosyl-anthranilate. In E.coli, the
first step in the conversion of chorismate to PABA
involves two proteins: PabA and PabB which co-operate to
transfer the amide nitrogen of glutamine to chorismate
forming 4-amino-4 deoxychorismate (ADC). PabA acts as a
glutamine amidotransferase, supplying an amino group to
PabB, which carries out the amination reaction. A third
protein PabC then mediates elimination of pyruvate and
aromatization to give PABA. Several organisms have
bipartite proteins containing fused domains homologous
to PabA and PabB commonly called PABA synthases. These
hybrid PABA synthases may produce ADC and not PABA.
Length = 184
Score = 101 bits (254), Expect = 4e-22
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 218 NLLRVLSSLGCRITIVGA-ETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL++ L LG + +V E + +++ L PD +++S GPG P + S I + +
Sbjct: 13 NLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGI--SLEIIRALAG 70
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMN------HGFA 330
+P+ G+CLGHQ + A G + V+ + HG + + +G + + H
Sbjct: 71 KVPILGVCLGHQAIAEAFGGKVVRAPEPMHGKTSEIHHDGSGLFKGLPQPFTVGRYHSLV 130
Query: 331 IDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
+D LP L E S D R D P++ VQ+HPES
Sbjct: 131 VDPDPLPDLL-EVTASTEDGVIMALRHRDLPIYGVQFHPES 170
>gnl|CDD|30858 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component
II [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 191
Score = 92.1 bits (229), Expect = 2e-19
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL++ L LG +T+V + S + I +L+PD +++S GPG P + S +I +
Sbjct: 16 NLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGI-SLELIRRFAGR 74
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMN--------HG 328
+P+ G+CLGHQ + A G + V+ + HG + + +G+ + H
Sbjct: 75 -IPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITH--DGSGLFAGLPNPFTVTRYHS 131
Query: 329 FAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
+D +LP LE T S R P++ VQ+HPES
Sbjct: 132 LVVDPETLPEELEVTAESEDGGVIMAVRHKKLPIYGVQFHPES 174
>gnl|CDD|30864 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 72.2 bits (177), Expect = 2e-13
Identities = 48/166 (28%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 221 RVLSSLGCRIT-IVGAETSYKDIMSLQPDGVLLSNGPG---DPAVTSVYSSPIICKLVDS 276
R L LG + IV +++ PDG+++S GP D +I
Sbjct: 19 RRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVP 78
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTV---------EIVSMNH 327
G P+ GICLGHQLL ALG + + + G PV+ V M+H
Sbjct: 79 GKPVLGICLGHQLLAKALGGKVERGPKREIGW-TPVELTEGDDPLFAGLPDLFTTVFMSH 137
Query: 328 GFAIDASSLPAGLEETHISLFDSSNC---GFRLIDQPVFSVQYHPE 370
G + LP G L S C FR + + VQ+HPE
Sbjct: 138 GDTVVE--LPEGAV----VLASSETCPNQAFR-YGKRAYGVQFHPE 176
>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in GMP synthetase. Type 1
glutamine amidotransferase (GATase1) domain found in GMP
synthetase. GMP synthetase is a glutamine
amidotransferase from the de novo purine biosynthetic
pathway. Glutamine amidotransferase (GATase) activity
catalyse the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. GMP
synthetase catalyses the amination of the nucleotide
precursor xanthosine 5'-monophospahte to form GMP. GMP
synthetase belongs to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 181
Score = 69.5 bits (171), Expect = 1e-12
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 41/171 (23%)
Query: 221 RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYS--SPIICK-LVDSG 277
R + LG I+ T ++I P G++LS GP +SVY +P + + + G
Sbjct: 16 RRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGP-----SSVYEEDAPRVDPEIFELG 70
Query: 278 MPMFGICLGHQLLGLALGAQTVKMYQGHHG--------VNHP---VKNISNGTVEIVSMN 326
+P+ GIC G QL+ ALG + + G ++ + + + V M+
Sbjct: 71 VPVLGICYGMQLIAKALGGKVER---GDKREYGKAEIEIDDSSPLFEGLPDEQT--VWMS 125
Query: 327 HGFAIDASSLPAGLEETHISLFD----SSNCGFRLI---DQPVFSVQYHPE 370
HG + LP G F S NC I ++ ++ VQ+HPE
Sbjct: 126 HGDEVVK--LPEG--------FKVIASSDNCPVAAIANEEKKIYGVQFHPE 166
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 188
Score = 66.5 bits (163), Expect = 1e-11
Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 26/182 (14%)
Query: 207 HVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYS 266
H G+ +LLR + I +V DG+++ GP Y
Sbjct: 7 HDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMS-VDEDDY- 64
Query: 267 SPI-------ICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGT 319
P I + + +G P+ GICLGHQLL ALG + + +G PV G
Sbjct: 65 -PWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGK 123
Query: 320 VEIVSMNHGFAIDA--------SSLPAGLEETHISLFDSSNC---GFRLIDQPVFSVQYH 368
+ + LP G + L S C FR +Q+H
Sbjct: 124 ADPLFAGLPDEFPVFHWHGDTVVELPPG----AVLLASSEACPNQAFR-YGDRALGLQFH 178
Query: 369 PE 370
PE
Sbjct: 179 PE 180
>gnl|CDD|35249 KOG0026, KOG0026, KOG0026, Anthranilate synthase, beta chain [Amino
acid transport and metabolism].
Length = 223
Score = 58.5 bits (141), Expect = 3e-09
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 21/188 (11%)
Query: 201 SSDAKYHVVCIDY--GIRSNLLRVLS-SLGCRITIV-GAETSYKDIMSLQPDGVLLSNGP 256
SS ++ ID NL + L LGC + E + +++ P G+L+S GP
Sbjct: 14 SSKQNGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGP 73
Query: 257 GDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQG-HHGVNHPV--- 312
G P + + + + +P+FG+C+G Q +G A G + V+ G HG + V
Sbjct: 74 GTPQDSGISLQTV--LELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYD 131
Query: 313 --------KNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLID-QPVF 363
+SN IV H I+ S P+ E D R + +
Sbjct: 132 EKGEEGLFSGLSNPF--IVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQ 189
Query: 364 SVQYHPES 371
VQ+HPES
Sbjct: 190 GVQFHPES 197
>gnl|CDD|164502 CHL00101, trpG, anthranilate synthase component 2.
Length = 190
Score = 55.9 bits (135), Expect = 2e-08
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 218 NLLRVLSSLGCR-ITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
NL++ L L + E I +L +++S GPG P + + S +I
Sbjct: 14 NLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGI-SLDVISSYAPY 72
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPV--------KNISNGTVEIVSMNHG 328
+P+ G+CLGHQ +G G + +K + HG + + + N + H
Sbjct: 73 -IPILGVCLGHQSIGYLFGGKIIKAPKPMHGKTSKIYHNHDDLFQGLPNPF--TATRYHS 129
Query: 329 FAIDASSLPAGLEETHISLFDSSNCGFRLIDQP-VFSVQYHPES 371
ID +LP+ LE T + D R + +Q+HPES
Sbjct: 130 LIIDPLNLPSPLEITAWT-EDGLIMACRHKKYKMLRGIQFHPES 172
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 55.3 bits (133), Expect = 3e-08
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 218 NLLRVLSSLGCRITIVGAE--TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPI--ICKL 273
+ L L G + +V + D+ DG++L GPG P + + + + +
Sbjct: 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75
Query: 274 VDSGMPMFGICLGHQLLGLALGAQ 297
+G P+ GICLG QL L LG Q
Sbjct: 76 AAAGKPILGICLGAQL--LVLGVQ 97
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to be
a serine peptidase having a Ser-His-Glu catalytic triad
which differs from the Cys-His-Glu catalytic triad of
typical GATase1 domains, by having a Ser in place of the
reactive Cys at the nucleophile elbow. The E. coli HP-II
C-terminal domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 55.3 bits (133), Expect = 3e-08
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 218 NLLRVLSSLGCRITIVGAETSYK--DIMSLQPDGVLLSNGPGDPAVTSVYSSPI--ICKL 273
+ L L G + +V + D+ DG++L GPG P + + + + +
Sbjct: 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREA 75
Query: 274 VDSGMPMFGICLGHQLL 290
+G P+ GICLG QLL
Sbjct: 76 AAAGKPVLGICLGAQLL 92
>gnl|CDD|36438 KOG1224, KOG1224, KOG1224, Para-aminobenzoate (PABA) synthase ABZ1
[Translation, ribosomal structure and biogenesis].
Length = 767
Score = 54.7 bits (131), Expect = 4e-08
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 25/216 (11%)
Query: 194 EETSFLKSSDAKYHVVCIDY--GIRSNLLRVLSSLG--CRITIVGAET----SYKDIMSL 245
E+ S +K S + + ID N+ ++LS++ + IV E +Y +
Sbjct: 3 EDLSVVKKSLPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQD 62
Query: 246 QP-DGVLLSNGPGDPAVTSVYSSPIICKLVD--SGMPMFGICLGHQLLGLALGAQTV--- 299
D +++ GPG P + I +L+ +P+ GICLG Q LGL GA V
Sbjct: 63 VAFDAIVVGPGPGSPMCAA--DIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVHAN 120
Query: 300 -----KMYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNC- 353
++ H N I +G + ++ +SLP L +++D +
Sbjct: 121 EPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHI 180
Query: 354 --GFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFID 387
P F +QYHPES LF F+D
Sbjct: 181 LMSIMHSSFPHFGLQYHPESI-ASTYGSQLFKNFLD 215
>gnl|CDD|36835 KOG1622, KOG1622, KOG1622, GMP synthase [Nucleotide transport and
metabolism].
Length = 552
Score = 50.7 bits (121), Expect = 7e-07
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY 265
++ +D+G + + R + L + I+ T K I P G+++S GP SVY
Sbjct: 19 ILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGP-----NSVY 73
Query: 266 S--SPII-CKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVN--------HPVKN 314
+ +P + + G+P+ GIC G QL+ G VK G +
Sbjct: 74 AEDAPSFDPAIFELGVPVLGICYGMQLINKLNGGTVVKGMVREDGEDEIEVDDSVDLFSG 133
Query: 315 ISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370
+ V + HG ++ +P G + S + G + ++ +Q+HPE
Sbjct: 134 LHKTEFMTVLLTHGDSLSK--VPEGFKVVAFSG-NKPVAGILNELKKIYGLQFHPE 186
>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 189
Score = 50.3 bits (121), Expect = 1e-06
Identities = 40/164 (24%), Positives = 57/164 (34%), Gaps = 48/164 (29%)
Query: 228 CRITIVGAETSYKDIMSLQPDGVLLSNGP--------GDPAVTS--------VYSSPIIC 271
+ V E + + L DG+LL+ G +P + ++
Sbjct: 36 VLLPPVDDEEDLEQYLEL-LDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLR 94
Query: 272 KLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAI 331
++ G P+ GIC G QLL +ALG +YQ VN S+ H AI
Sbjct: 95 AALERGKPILGICRGMQLLNVALGG---TLYQ-DIRVN--------------SL-HHQAI 135
Query: 332 DASSLPAGLEETHISLFDSSNCG----FRLID-QPVFSVQYHPE 370
L GL + G D V VQ+HPE
Sbjct: 136 KR--LADGLRVEA-----RAPDGVIEAIESPDRPFVLGVQWHPE 172
>gnl|CDD|32254 COG2071, COG2071, Predicted glutamine amidotransferases [General
function prediction only].
Length = 243
Score = 49.9 bits (119), Expect = 1e-06
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 25/151 (16%)
Query: 265 YSSPIICKLVDSGMPMFGICLGHQLLGLALGA---QTVKMYQGH---------HGVNHPV 312
+ +I ++ G+P+ GIC G QLL +ALG Q + GH H +H V
Sbjct: 95 FELALIRAALERGIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEV 154
Query: 313 K--------NISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQP-VF 363
I + +V+ H AI L GL + D + + + V
Sbjct: 155 HIEPGSKLAKILGESEFMVNSFHHQAIKK--LAPGLVVEARAP-DGTVEAVEVKNDAFVL 211
Query: 364 SVQYHPESSPGPQD-SYYLFSTFIDFMHKRK 393
VQ+HPE S LF F++ K
Sbjct: 212 GVQWHPEYLVDTNPLSLALFEAFVNACKKHA 242
>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). IGPS incorporates ammonia derived from
glutamine into
N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to form
5'-(5-aminoimidazole-4-carboxamide) ribonucleotide
(AICAR) and imidazole glycerol phosphate (IGP). The
glutamine amidotransferase domain generates the ammonia
nucleophile which is channeled from the glutaminase
active site to the PRFAR active site. IGPS belong to the
triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 198
Score = 46.0 bits (110), Expect = 2e-05
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Query: 208 VVCIDYG---IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPG----DPA 260
+ IDYG +RS + L LG + I ++I+S D ++L PG A
Sbjct: 1 IAIIDYGMGNLRS-VANALERLGAEVIITSDP---EEILSA--DKLIL---PGVGAFGDA 51
Query: 261 VTSVYSSPI---ICKLVDSGMPMFGICLGHQLL 290
+ ++ + + + + SG P GICLG QLL
Sbjct: 52 MANLRERGLIEALKEAIASGKPFLGICLGMQLL 84
>gnl|CDD|30467 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and
metabolism].
Length = 204
Score = 38.6 bits (90), Expect = 0.003
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 19/94 (20%)
Query: 208 VVCIDYG---IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264
V IDYG +RS + + L LG + + ++I L+ D ++L PG A +
Sbjct: 4 VAIIDYGSGNLRS-VKKALERLGAEVVVSR---DPEEI--LKADKLIL---PGVGAFGAA 54
Query: 265 YSS-------PIICKLVDSGMPMFGICLGHQLLG 291
++ I + V+SG P GICLG QLL
Sbjct: 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF 88
>gnl|CDD|153218 cd01747, GATase1_Glutamyl_Hydrolase, Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase
catalyzes the cleavage of the gamma-glutamyl chain of
folylpoly-gamma-glutamyl substrates and is a central
enzyme in folyl and antifolyl poly-gamma-glutamate
metabolism. GATase activity involves the removal of the
ammonia group from a glutamate molecule and its
subsequent transfer to a specific substrate, thus
creating a new carbon-nitrogen group on the substrate.
gamma-Glutamyl hydrolases belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 273
Score = 38.5 bits (90), Expect = 0.003
Identities = 42/198 (21%), Positives = 66/198 (33%), Gaps = 57/198 (28%)
Query: 223 LSSLGCRIT--IVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYS--SPIICKLV---- 274
L S G R+ + Y D + +G+L G D TS Y+ + II L
Sbjct: 29 LESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVD-IDTSGYARTAKIIYNLALERN 87
Query: 275 DSG--MPMFGICLGHQLLG-LALGAQTVKMYQGHHGVNHPVKNISN-------------- 317
D+G P++G CLG +LL L G + P+ +
Sbjct: 88 DAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDL 147
Query: 318 ----GTVEIVSMNHGFAIDASSL------------------PAGLEETHISLFDSSNCGF 355
T + NH + I + G+E IS ++
Sbjct: 148 LKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVE--FISTVEA----- 200
Query: 356 RLIDQPVFSVQYHPESSP 373
P++ VQ+HPE +
Sbjct: 201 --YKYPIYGVQWHPEKNA 216
>gnl|CDD|38389 KOG3179, KOG3179, KOG3179, Predicted glutamine synthetase
[Nucleotide transport and metabolism].
Length = 245
Score = 33.8 bits (77), Expect = 0.098
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 21/116 (18%)
Query: 269 IICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHH---GVNHPVKNISNG------- 318
+ KL + GIC GHQ++ A G + + +G G VK+
Sbjct: 85 FVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEI 144
Query: 319 --TVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQP--VFSVQYHPE 370
++ I+ + ++ L E L S C + + Q HPE
Sbjct: 145 PKSLNIIKCHQDEVLE-------LPEGAELLASSEKCEVEMFSIEDHLLCFQGHPE 193
>gnl|CDD|163621 cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related
proteins, metallophosphatase domain. Acid phosphatase 5
(ACP5) removes the mannose 6-phosphate recognition
marker from lysosomal proteins. The exact site of
dephosphorylation is not clear. Evidence suggests
dephosphorylation may take place in a prelysosomal
compartment as well as in the lysosome. ACP5 belongs to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 277
Score = 31.5 bits (72), Expect = 0.46
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 185 WSEKIWKWGEETSFLKSSDAKYHVVCIDYGIRSN 218
+E+ W E+T L +S A + +V + I S+
Sbjct: 149 LAEEQLAWLEKT--LAASTADWKIVVGHHPIYSS 180
>gnl|CDD|35320 KOG0097, KOG0097, KOG0097, GTPase Rab14, small G protein
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 215
Score = 31.2 bits (70), Expect = 0.56
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 77 EDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALT 132
E F +++R ++GA G ++ +IT S Y H +WL D R LT
Sbjct: 71 ERFRAVTRSYYRGAAGALMVYDITRRSTYN---HLSSWLT----------DARNLT 113
>gnl|CDD|146348 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76. Family of
alpha-1,6-mannanases.
Length = 367
Score = 30.0 bits (68), Expect = 1.0
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 170 GAELAKHVTVSQRRDWSEKIWKWGEETSFLKSSDAKYHV 208
A LA++ +W+EK+W W + + + D + V
Sbjct: 163 AARLARYTGNDTYLEWAEKVWDWSVDVGLIDTDD--WLV 199
>gnl|CDD|32416 COG2235, ArcA, Arginine deiminase [Amino acid transport and
metabolism].
Length = 409
Score = 30.2 bits (68), Expect = 1.1
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 23/167 (13%)
Query: 79 FESISRKNFKGAVGL--VIKAEITEPSNYRANMHFDAWLKSCG----IIGLSGIDTRALT 132
E++++ FK VG VI EI RA MH D + ++ L
Sbjct: 241 VEALAKLLFKDDVGFKRVIAIEI---PKNRAFMHLDTVFTMVDRDKFTVHPEVLEAGTLE 297
Query: 133 VWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKW 192
V+ G + +E+L + + + G + + + + + +W
Sbjct: 298 VYSLTPG---------GNKLIIIEELGDLLEYLAEALGIDKVRLIETGGGDVIAAEREQW 348
Query: 193 GEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCR-ITIVGAETS 238
+ T+ L + VV D I +N L L G + ITI G+E
Sbjct: 349 DDGTNTLTIAPGV--VVAYDRNIYTNNL--LREAGIKVITIPGSELG 391
>gnl|CDD|153221 cd01750, GATase1_CobQ, Type 1 glutamine amidotransferase (GATase1)
domain found in Cobyric Acid Synthase (CobQ). Type 1
glutamine amidotransferase (GATase1) domain found in
Cobyric Acid Synthase (CobQ). CobQ plays a role in
cobalamin biosythesis. CobQ catalyses amidations at
positions B, D, E, and G on adenosylcobyrinic
A,C-diamide in the biosynthesis of cobalamin. CobQ
belongs to the triad family of amidotransferases. Two
of the three residues of the catalytic triad that are
involved in glutamine binding, hydrolysis and transfer
of the resulting ammonia to the acceptor substrate in
other triad aminodotransferases are conserved in CobQ.
Length = 194
Score = 29.9 bits (68), Expect = 1.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 272 KLVDSGMPMFGICLGHQLLG 291
+G P+ GIC G+Q+LG
Sbjct: 67 NYARAGGPVLGICGGYQMLG 86
>gnl|CDD|36918 KOG1706, KOG1706, KOG1706, Argininosuccinate synthase [Amino acid
transport and metabolism].
Length = 412
Score = 30.0 bits (67), Expect = 1.3
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 115 LKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPD-GQF-DLEDLKERAKNWSGLKGAE 172
KS + G+DT + W+++ G VIA+ + GQ D E+ +++A SG K
Sbjct: 5 KKSVVLAYSGGLDTSCILAWLKEQGY--EVIAYLANVGQKEDFEEARKKALK-SGAK--- 58
Query: 173 LAKHVTVSQRRDWSEK-IWK 191
K V R ++ E IW
Sbjct: 59 --KVVVEDVREEFVEDFIWP 76
>gnl|CDD|133269 cd01866, Rab2, Rab2 subfamily. Rab2 is localized on cis-Golgi
membranes and interacts with Golgi matrix proteins. Rab2
is also implicated in the maturation of vesicular
tubular clusters (VTCs), which are
microtubule-associated intermediates in transport
between the ER and Golgi apparatus. In plants, Rab2
regulates vesicle trafficking between the ER and the
Golgi bodies and is important to pollen tube growth.
GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs) interact
with GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 168
Score = 29.7 bits (67), Expect = 1.4
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 76 SEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSC 118
E F SI+R ++GA G ++ +IT + H +WL+
Sbjct: 63 QESFRSITRSYYRGAAGALLVYDITRRETFN---HLTSWLEDA 102
>gnl|CDD|35842 KOG0623, KOG0623, KOG0623, Glutamine amidotransferase/cyclase
[Amino acid transport and metabolism].
Length = 541
Score = 29.6 bits (66), Expect = 1.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 270 ICKLVDSGMPMFGICLGHQLL 290
+ K ++SG P GIC+G Q L
Sbjct: 67 LRKYIESGKPFMGICVGLQAL 87
>gnl|CDD|133630 CHL00188, hisH, imidazole glycerol phosphate synthase subunit hisH;
Provisional.
Length = 210
Score = 29.1 bits (65), Expect = 2.3
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 26/121 (21%)
Query: 211 IDYGIRSNLLRV---LSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSS 267
IDY + NL V + G + I+ +E+ + +L GV G D A+ +
Sbjct: 7 IDYSM-GNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGV----GSFDLAMKKLEKK 61
Query: 268 PI---ICKLVDSGMPMFGICLGHQLL----------GLALGAQTVKMYQGHHGVNHPVKN 314
+ I K + G P GICLG LL GL + VK + + PVK
Sbjct: 62 GLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLK-----HSPVKV 116
Query: 315 I 315
I
Sbjct: 117 I 117
>gnl|CDD|133322 cd04122, Rab14, Rab14 subfamily. Rab14 GTPases are localized to
biosynthetic compartments, including the rough ER, the
Golgi complex, and the trans-Golgi network, and to
endosomal compartments, including early endosomal
vacuoles and associated vesicles. Rab14 is believed to
function in both the biosynthetic and recycling pathways
between the Golgi and endosomal compartments. Rab14 has
also been identified on GLUT4 vesicles, and has been
suggested to help regulate GLUT4 translocation. In
addition, Rab14 is believed to play a role in the
regulation of phagocytosis. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Due to the presence of truncated sequences in this CD,
the lipid modification site is not available for
annotation.
Length = 166
Score = 29.0 bits (65), Expect = 2.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 77 EDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALT 132
E F +++R ++GA G ++ +IT S Y H +WL D R LT
Sbjct: 62 ERFRAVTRSYYRGAAGALMVYDITRRSTYN---HLSSWLT----------DARNLT 104
>gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily. Rab4 has been implicated in
numerous functions within the cell. It helps regulate
endocytosis through the sorting, recycling, and
degradation of early endosomes. Mammalian Rab4 is
involved in the regulation of many surface proteins
including G-protein-coupled receptors, transferrin
receptor, integrins, and surfactant protein A.
Experimental data implicate Rab4 in regulation of the
recycling of internalized receptors back to the plasma
membrane. It is also believed to influence
receptor-mediated antigen processing in B-lymphocytes,
in calcium-dependent exocytosis in platelets, in
alpha-amylase secretion in pancreatic cells, and in
insulin-induced translocation of Glut4 from internal
vesicles to the cell surface. Rab4 is known to share
effector proteins with Rab5 and Rab11. GTPase
activating proteins (GAPs) interact with GTP-bound Rab
and accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the GTP-bound
state. Rabs are further regulated by guanine nucleotide
dissociation inhibitors (GDIs), which facilitate Rab
recycling by masking C-terminal lipid binding and
promoting cytosolic localization. Most Rab GTPases
contain a lipid modification site at the C-terminus,
with sequence motifs CC, CXC, or CCX. Lipid binding is
essential for membrane attachment, a key feature of most
Rab proteins. Due to the presence of truncated
sequences in this CD, the lipid modification site is not
available for annotation.
Length = 161
Score = 28.8 bits (65), Expect = 2.9
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 77 EDFESISRKNFKGAVGLVIKAEITEPSNYRA 107
E F S++R ++GA G ++ +IT +++ A
Sbjct: 60 ERFRSVTRSYYRGAAGALLVYDITNRTSFEA 90
>gnl|CDD|30850 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide
transport and metabolism].
Length = 533
Score = 28.5 bits (64), Expect = 3.1
Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 42/152 (27%)
Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHG-----VNHPVKNISNGTVEIVSM------ 325
+P GICLG QL + + + + +PV ++ ++V +
Sbjct: 372 NIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRL 431
Query: 326 -NHGFAIDASSLPAGL------EETHISLFDSSN--------CGFR-------------- 356
+ + +L A L E H ++ +N G
Sbjct: 432 GAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIV 491
Query: 357 -LIDQPVF-SVQYHPESSPGPQDSYYLFSTFI 386
L D P F + Q+HPE P + LF F+
Sbjct: 492 ELPDHPFFVATQFHPEFKSRPLRPHPLFVGFV 523
>gnl|CDD|146223 pfam03468, XS, XS domain. The XS (rice gene X and SGS3) domain is
found in a family of plant proteins including gene X and
SGS3. SGS3 is thought to be involved in
post-transcriptional gene silencing (PTGS). This domain
contains a conserved aspartate residue that may be
functionally important. The XS domain has recently been
predicted to possess an RRM-like RNA-binding domain by
fold recognition.
Length = 118
Score = 28.5 bits (64), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 162 AKNWSGLKGA-ELAKHVTVSQ--RRDW 185
AK+WSG K A KH ++DW
Sbjct: 66 AKDWSGFKNALAFEKHFEKDGHGKKDW 92
>gnl|CDD|133307 cd04107, Rab32_Rab38, Rab38/Rab32 subfamily. Rab32 and Rab38 are
members of the Rab family of small GTPases. Human Rab32
was first identified in platelets but it is expressed in
a variety of cell types, where it functions as an
A-kinase anchoring protein (AKAP). Rab38 has been shown
to be melanocyte-specific. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Length = 201
Score = 28.0 bits (63), Expect = 4.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 77 EDFESISRKNFKGAVGLVIKAEITEPSNYRA 107
E F ++R ++GAVG +I ++T PS + A
Sbjct: 61 ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEA 91
>gnl|CDD|37598 KOG2387, KOG2387, KOG2387, CTP synthase (UTP-ammonia lyase)
[Nucleotide transport and metabolism].
Length = 585
Score = 27.9 bits (62), Expect = 4.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 248 DGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQL 289
DG+L+ G GD V + + ++ +P GICLG QL
Sbjct: 365 DGILVPGGFGDRGVEGKILAAKWAR--ENKIPFLGICLGMQL 404
>gnl|CDD|112781 pfam03982, DAGAT, Diacylglycerol acyltransferase. The terminal
step of triacylglycerol (TAG) formation is catalysed by
the enzyme diacylglycerol acyltransferase (DAGAT).
Length = 297
Score = 28.2 bits (63), Expect = 4.8
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 34 SIQAEICFNTSLTGYQEILTD-PSYLGQIV-NFTFP-------HIGNVGVNSEDFESISR 84
S+ A F+T+ TG+ + + + F P +G + V+ E E +
Sbjct: 76 SVGAFSNFSTNATGFMDKFPGIRPNICTLAGQFYTPFRREILLSLGLIEVSRESIEYVLD 135
Query: 85 KNFKG-AVGLVI 95
K KG AV LV+
Sbjct: 136 KCGKGRAVVLVV 147
>gnl|CDD|34648 COG5043, MRS6, Vacuolar protein sorting-associated protein
[Intracellular trafficking and secretion].
Length = 2552
Score = 27.7 bits (61), Expect = 6.0
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 262 TSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK--NISNGT 319
T+V I +L C+ L + G +K K +I N
Sbjct: 2413 TTVLDYHDIPRLRLPRYVWDDGCVAPYDLRESQGQYWLKTLDAGKYPLDEYKFHDIINNV 2472
Query: 320 VEIVSMNHGFAIDASSL 336
I+S + + + L
Sbjct: 2473 AVIISRDIHAIVTSKIL 2489
>gnl|CDD|35309 KOG0086, KOG0086, KOG0086, GTPase Rab4, small G protein superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 214
Score = 27.7 bits (61), Expect = 6.3
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 77 EDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWL 115
E F S++R ++GA G ++ +IT ++ A WL
Sbjct: 69 ERFRSVTRSYYRGAAGALLVYDITSRDSFNA---LTNWL 104
>gnl|CDD|30949 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only].
Length = 326
Score = 27.7 bits (61), Expect = 6.4
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 194 EETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITI--VGAETSYKDIMSLQPDGVL 251
E+ LK A + + + + + G + + VG +T + +L P G L
Sbjct: 178 EKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRL 237
Query: 252 LSNG-PGDPAVTSVYSSPIICKLV 274
+S G + P++ K +
Sbjct: 238 VSIGALSGGPPVPLNLLPLLGKRL 261
>gnl|CDD|33246 COG3442, COG3442, Predicted glutamine amidotransferase [General
function prediction only].
Length = 250
Score = 27.6 bits (61), Expect = 6.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 274 VDSGMPMFGICLGHQLLG 291
+++G P+ IC G+QLLG
Sbjct: 84 IENGKPVLAICGGYQLLG 101
>gnl|CDD|33564 COG3769, COG3769, Predicted hydrolase (HAD superfamily) [General
function prediction only].
Length = 274
Score = 27.3 bits (60), Expect = 7.8
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 159 KERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKWGEE 195
E W+GL + A ++ R++SE I +
Sbjct: 127 DEEIAEWTGLPREQAA----LAMLREYSETIIWRSSD 159
>gnl|CDD|144346 pfam00708, Acylphosphatase, Acylphosphatase.
Length = 90
Score = 27.2 bits (61), Expect = 8.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 306 HGVNHPVKNISNGTVEIV 323
G+ V+N+ +GTVEIV
Sbjct: 29 LGLKGYVRNLPDGTVEIV 46
>gnl|CDD|144950 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40. This
family includes a range of zinc metallopeptidases
belonging to several families in the peptidase
classification. Family M20 are Glutamate
carboxypeptidases. Peptidase family M25 contains X-His
dipeptidases.
Length = 310
Score = 27.1 bits (60), Expect = 8.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 138 YGVSNSVIAHHPDGQFDLEDLKERAK 163
+G + +AH P+ DL+DL++ AK
Sbjct: 277 FGPGDGALAHSPNEYVDLDDLEKGAK 302
>gnl|CDD|35314 KOG0091, KOG0091, KOG0091, GTPase Rab39, small G protein
superfamily [General function prediction only].
Length = 213
Score = 26.9 bits (59), Expect = 9.8
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 77 EDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLK 116
E F SI++ ++ +VG+++ +IT N + H + W+K
Sbjct: 69 ERFRSITKSYYRNSVGVLLVYDIT---NRESFEHVENWVK 105
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,886,595
Number of extensions: 257434
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 54
Length of query: 396
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 300
Effective length of database: 4,189,273
Effective search space: 1256781900
Effective search space used: 1256781900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)