RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase
small subunit [Candidatus Liberibacter asiaticus str. psy62]
         (396 letters)



>gnl|CDD|183597 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit;
           Reviewed.
          Length = 360

 Score =  551 bits (1424), Expect = e-158
 Identities = 195/379 (51%), Positives = 245/379 (64%), Gaps = 20/379 (5%)

Query: 11  KPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIG 70
              A LVL DG+V EG   GA G    E+ FNTS+TGYQEILTDPSY GQIV FT+P IG
Sbjct: 2   MMKAYLVLEDGTVFEGKAFGAEGETVGEVVFNTSMTGYQEILTDPSYAGQIVTFTYPLIG 61

Query: 71  NVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRA 130
           N GVN EDFES        A GL+++     PSN+R+ M  D +LK  GI G+SGIDTRA
Sbjct: 62  NYGVNREDFESDRPH----AKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTRA 117

Query: 131 LTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIW 190
           LT  +R+ G    VIA      FD E+L E+A+ + GL G +L K V+  +   W     
Sbjct: 118 LTRKLREKGAMKGVIAT---EDFDAEELLEKARAFPGLLGLDLVKEVSTKEPYPWPGP-- 172

Query: 191 KWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGV 250
                       + KY VV ID+G++ N+LR L+  GCR+T+V A T+ ++I++L PDGV
Sbjct: 173 ----------GGELKYKVVAIDFGVKRNILRELAERGCRVTVVPATTTAEEILALNPDGV 222

Query: 251 LLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNH 310
            LSNGPGDPA    Y+  +I +L++  +P+FGICLGHQLL LALGA+T KM  GH G NH
Sbjct: 223 FLSNGPGDPAAL-DYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGHRGANH 281

Query: 311 PVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370
           PVK++  G VEI S NHGFA+D  SLPA LE TH++L D +  G R  D P FSVQYHPE
Sbjct: 282 PVKDLETGKVEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPE 341

Query: 371 SSPGPQDSYYLFSTFIDFM 389
           +SPGP DS YLF  F++ M
Sbjct: 342 ASPGPHDSAYLFDEFVELM 360


>gnl|CDD|162320 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small
           subunit.  This model represents the whole of the small
           chain of the glutamine-dependent form (EC 6.3.5.5) of
           carbamoyl phosphate synthase, CPSase II. The C-terminal
           domain has glutamine amidotransferase activity. Note
           that the sequence from the mammalian urea cycle form has
           lost the active site Cys, resulting in an
           ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases
           of pyrimidine biosynthesis, arginine biosynthesis, and
           the urea cycle may be encoded by one or by several
           genes, depending on the species.
          Length = 358

 Score =  432 bits (1113), Expect = e-122
 Identities = 178/379 (46%), Positives = 226/379 (59%), Gaps = 22/379 (5%)

Query: 14  AVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG 73
           A LVL DG+V  G   GA G++  E+ FNT +TGYQEILTDPSY GQIV FT+P IGN G
Sbjct: 1   AYLVLEDGTVFRGYSFGAEGTVAGEVVFNTGMTGYQEILTDPSYKGQIVVFTYPLIGNYG 60

Query: 74  VNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTV 133
           VN ED ES          GLV++      SN+RA    D +LK  GI G+ G+DTRAL  
Sbjct: 61  VNDEDAESKGIH----VSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTRALVK 116

Query: 134 WIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKWG 193
            IR+ G    VI+       + E+L ++A     + G  L   V+         + + WG
Sbjct: 117 KIREKGTMKGVISTED---SNDEELVQKASVSPDIDGINLVAEVSTK-------EPYTWG 166

Query: 194 EETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLS 253
           +     K    K  VV ID+G++ N+LR L   GC +T+V  +T  ++I    PDG+ LS
Sbjct: 167 Q-----KRGGKKKRVVVIDFGVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLS 221

Query: 254 NGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK 313
           NGPGDPA        I  + +   +P+FGICLGHQLL LA GA+T KM  GH G NHPVK
Sbjct: 222 NGPGDPAAVEPAIETI--RKLLEKIPIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVK 279

Query: 314 NISNGTVEIVSMNHGFAIDASSLPAG-LEETHISLFDSSNCGFRLIDQPVFSVQYHPESS 372
           ++  G VEI S NHG+A+D  SLPAG LE TH++L D +  G R  D PVFSVQYHPE+S
Sbjct: 280 DLITGRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEAS 339

Query: 373 PGPQDSYYLFSTFIDFMHK 391
           PGP D+ YLF  FID + K
Sbjct: 340 PGPHDTEYLFDEFIDLIKK 358


>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit;
           Reviewed.
          Length = 354

 Score =  369 bits (949), Expect = e-103
 Identities = 154/382 (40%), Positives = 211/382 (55%), Gaps = 32/382 (8%)

Query: 14  AVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG 73
           A L+L DG+V EG   GA   +  EI FNT +TGYQE+LTDPSY GQIV FT+P IGN G
Sbjct: 3   AYLILEDGTVFEGELIGAPIDVTGEIVFNTGMTGYQEVLTDPSYKGQIVVFTYPLIGNYG 62

Query: 74  VNSEDFESISRKNFKGAVGLVIKAEI-TEPSNYRANMHFDAWLKSCGIIGLSGIDTRALT 132
           +N++D+ES      +  V  VI  E+  E S+YRA    D +LK   I G+SG+DTRAL 
Sbjct: 63  INADDYESK-----QPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTRALV 117

Query: 133 VWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKW 192
             IR+ G   + I    D     +           +    +   V+              
Sbjct: 118 KHIREKGTMKASITTTDDAHAFDQIKA-------LVLPKNVVAQVSTK------------ 158

Query: 193 GEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLL 252
             E     +     HV  ID+G + ++LR LS  GC++T++  +TS ++I +L PDG++L
Sbjct: 159 --EPYTYGNGG--KHVALIDFGYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVL 214

Query: 253 SNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPV 312
           SNGPGDP     Y   I  K + S  P+ GICLGHQL+ LALGA T K+  GH G NHPV
Sbjct: 215 SNGPGDPKELQPYLPEI--KKLISSYPILGICLGHQLIALALGADTEKLPFGHRGANHPV 272

Query: 313 KNISNGTVEIVSMNHGFAIDASSL-PAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
            +++ G V + S NHG+ +D  SL    L     ++ D S  G R   +PV SVQ+HPE+
Sbjct: 273 IDLTTGRVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEA 332

Query: 372 SPGPQDSYYLFSTFIDFMHKRK 393
            PGP D+ Y+F  F++ M K +
Sbjct: 333 HPGPHDAEYIFDEFLEMMEKAR 354


>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase
           (glutamine-hydrolyzing).
          Length = 415

 Score =  304 bits (779), Expect = 4e-83
 Identities = 168/375 (44%), Positives = 228/375 (60%), Gaps = 16/375 (4%)

Query: 6   PWTIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFT 65
           PW  K   A LVL DGSV +    GA G+   E+ FNTSLTGYQEILTDPSY GQ V  T
Sbjct: 51  PW--KTSDARLVLEDGSVWKAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMT 108

Query: 66  FPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSG 125
            PHIGN GVN +D ES  R+ F    GLVI++     SN+R       +L    I+G+  
Sbjct: 109 NPHIGNTGVNFDDEES--RQCF--LAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYD 164

Query: 126 IDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDW 185
           +DTRA+T  +R+ G    V++   D + D E+L + +++W  + G +L   V+     +W
Sbjct: 165 VDTRAITRRLREDGSLIGVLSTE-DSKTD-EELLKMSRSWD-IVGIDLISGVSCKSPYEW 221

Query: 186 SEKIWKWGEETSFLKSSDAK--YHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIM 243
            +K      E  F  +S     YHV+  D+GI+ N+LR L+S GC+IT+V +     + +
Sbjct: 222 VDKT---NPEWDFNTNSRDGESYHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEAL 278

Query: 244 SLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQ 303
            ++PDGVL SNGPGDP+    Y+   + +L+   +P+FGIC+GHQLLG ALG +T KM  
Sbjct: 279 KMKPDGVLFSNGPGDPSAVP-YAVETVKELLGK-VPVFGICMGHQLLGQALGGKTFKMKF 336

Query: 304 GHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVF 363
           GHHG NHPV+N   G VEI + NH +A+D +SLP G+E TH++L D S  G       V 
Sbjct: 337 GHHGGNHPVRNNRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVM 396

Query: 364 SVQYHPESSPGPQDS 378
           S+QYHPE+SPGP DS
Sbjct: 397 SLQYHPEASPGPHDS 411


>gnl|CDD|180190 PRK05670, PRK05670, anthranilate synthase component II;
           Provisional.
          Length = 189

 Score = 80.6 bits (200), Expect = 7e-16
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
           NL++ L  LG  + +    E + ++I +L PD ++LS GPG PA      S  + +    
Sbjct: 14  NLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPA--EAGISLELIREFAG 71

Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPV--------KNISNGTVEIVSMNHG 328
            +P+ G+CLGHQ +G A G + V+  +  HG   P+          + N     V+  H 
Sbjct: 72  KVPILGVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGSGIFAGLPNPFT--VTRYHS 129

Query: 329 FAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
             +D  SLP  LE T  +  D    G R  + P++ VQ+HPES
Sbjct: 130 LVVDRESLPDCLEVTAWT-DDGEIMGVRHKELPIYGVQFHPES 171


>gnl|CDD|184763 PRK14607, PRK14607, bifunctional glutamine
           amidotransferase/anthranilate phosphoribosyltransferase;
           Provisional.
          Length = 534

 Score = 73.6 bits (181), Expect = 9e-14
 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 11/162 (6%)

Query: 218 NLLRVLSSLGC-RITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVD 275
           N+ + +  LG   I +V   E + ++I +L P  +++S GPG P    + S  +I     
Sbjct: 14  NIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGI-SVEVIRHFSG 72

Query: 276 SGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMN------HGF 329
             +P+ G+CLGHQ +G A G + V   +  HG   P+ +   G    +         H  
Sbjct: 73  K-VPILGVCLGHQAIGYAFGGKIVHAKRILHGKTSPIDHNGKGLFRGIPNPTVATRYHSL 131

Query: 330 AIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
            ++ +SLP  LE T  S  D    G R  + P+F VQ+HPES
Sbjct: 132 VVEEASLPECLEVTAKSD-DGEIMGIRHKEHPIFGVQFHPES 172


>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II;
           Provisional.
          Length = 191

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 52/164 (31%), Positives = 70/164 (42%), Gaps = 12/164 (7%)

Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
           NL +    LG  + +    E    DI  L P  +++S GP  P    + S  +I    D 
Sbjct: 14  NLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGI-SLAVIRHFADK 72

Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330
            +P+ G+CLGHQ LG A GA+ V+  Q  HG    + +   G          V+  H   
Sbjct: 73  -LPILGVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQPLTVTRYHSLV 131

Query: 331 IDASSLPAGLEETHISLFDSSN---CGFRLIDQPVFSVQYHPES 371
           I A SLP   E T  S          G R    P+  VQ+HPES
Sbjct: 132 IAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPES 175


>gnl|CDD|161933 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate
           synthase or aminodeoxychorismate synthase.  This model
           describes the glutamine amidotransferase domain or
           peptide of the tryptophan-biosynthetic pathway enzyme
           anthranilate synthase or of the folate biosynthetic
           pathway enzyme para-aminobenzoate synthase. In at least
           one case, a single polypeptide from Bacillus subtilis
           was shown to have both functions. This model covers a
           subset of the sequences described by the pfam model
           GATase.
          Length = 188

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 218 NLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
           NL++    LG  + +   ++   ++I +L P  +++S GP  P    +    I  +    
Sbjct: 14  NLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAI--RHFAG 71

Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330
            +P+ G+CLGHQ +G A G   V+     HG    +++   G           +  H   
Sbjct: 72  KLPILGVCLGHQAMGQAFGGDVVRANTVMHGKTSEIEHNGAGIFRGLFNPLTATRYHSLV 131

Query: 331 IDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
           ++  +LP     T     +      R  D P+  VQ+HPES
Sbjct: 132 VEPETLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPES 172


>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing),
           N-terminal domain or A subunit.  separate polypeptide
           chains in most of the Archaea. This N-terminal region
           would be the smaller subunit.
          Length = 188

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 23/176 (13%)

Query: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY 265
           ++ +D+G +   L  R L  LG    +V   T  ++I    P G++LS GP      SVY
Sbjct: 1   ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPS-----SVY 55

Query: 266 S--SP-IICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG------VNHPV--KN 314
           +  +P    K+ + G+P+ GIC G QL+   LG +  +  +  +G      ++     + 
Sbjct: 56  AENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRG 115

Query: 315 ISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370
           + +     V M+HG  +    LP G +    S  +         ++P++ VQ+HPE
Sbjct: 116 LPD--ESTVWMSHGDKVKE--LPEGFKVLATSD-NCPVAAMAHEEKPIYGVQFHPE 166


>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II;
           Provisional.
          Length = 214

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 248 DGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG 307
           DGVLLS GPG P      S  ++     +G P+ G+CLGHQ +G+A GA   +  +  HG
Sbjct: 48  DGVLLSPGPGTPERAGA-SIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELLHG 106

Query: 308 VNHPVKNISNGTVE------IVSMNHGFAIDASSLPAGLEETHISLFDSSNC-GFRLIDQ 360
               V +   G +         +  H   I   +LPA LE T  +  DS      R  + 
Sbjct: 107 KTSSVHHTGVGVLAGLPDPFTATRYHSLTILPETLPAELEVTART--DSGVIMAVRHREL 164

Query: 361 PVFSVQYHPES 371
           P+  VQ+HPES
Sbjct: 165 PIHGVQFHPES 175


>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II;
           Provisional.
          Length = 193

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 14/180 (7%)

Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
           NL +    LG ++ +V   E     I +L P  +++S GP  P    +    I  +    
Sbjct: 14  NLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAI--EHFAG 71

Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330
            +P+ G+CLGHQ +    G Q V+  Q  HG   P+++      +       V+  H   
Sbjct: 72  KLPILGVCLGHQAIAQVFGGQVVRARQVMHGKTSPIRHTGRSVFKGLNNPLTVTRYHSLV 131

Query: 331 IDASSLPAGLEETHISLFDSSN----CGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFI 386
           +   +LP   E T  +  +  +     GF+    P+ +VQ+HPES    Q  + L + F+
Sbjct: 132 VKNDTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQ-GHQLLANFL 190


>gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II;
           Provisional.
          Length = 187

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
           NL +    LG  + +      +  DI +L+P  +++S GP  P    +  S  + +    
Sbjct: 14  NLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI--SLDVIRHYAG 71

Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330
            +P+ G+CLGHQ +  A G + V+  +  HG   P+ +   G          V+  H   
Sbjct: 72  RLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLANPLTVTRYHSLV 131

Query: 331 IDASSLPAGLEETHISLFDSSNC-GFRLIDQPVFSVQYHPES 371
           ++  SLPA  E T  S  ++    G R     +  VQ+HPES
Sbjct: 132 VEPDSLPACFEVTAWS--ETREIMGIRHRQWDLEGVQFHPES 171


>gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed.
          Length = 511

 Score = 61.2 bits (150), Expect = 5e-10
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 27/153 (17%)

Query: 232 IVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYS--SPIICKLV-DSGMPMFGICLGHQ 288
           IV  + S ++I +  P G++LS GP      SVY   +P     + + G+P+ GIC G Q
Sbjct: 32  IVPYDISAEEIRAFNPKGIILSGGP-----ASVYEEGAPRADPEIFELGVPVLGICYGMQ 86

Query: 289 LLGLALGAQTVKMYQGHHG--------VNHP---VKNISNGTVEIVSMNHGFAIDASSLP 337
           L+   LG +  +               V++     K +     + V M+HG  +    LP
Sbjct: 87  LMAHQLGGKVER---AGKREYGRAELEVDNDSPLFKGLPEE--QDVWMSHGDKVTE--LP 139

Query: 338 AGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370
            G +    +  +         ++  + VQ+HPE
Sbjct: 140 EGFKVIASTE-NCPIAAIANEERKFYGVQFHPE 171


>gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional.
          Length = 720

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 244 SLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQ 303
            + PD V+LS GPG P+     ++  I   +   +P+FG+CLG Q +  A G +  ++  
Sbjct: 567 RVNPDLVVLSPGPGRPSDFDCKAT--IDAALARNLPIFGVCLGLQAIVEAFGGELGQLAY 624

Query: 304 GHHGVNHPVKNISNGTV------EI-VSMNHGFAIDASSLPAGLEETHISLFDSSNCGFR 356
             HG    ++    G +      E  V   H    D  +LP  L  T  +  D       
Sbjct: 625 PMHGKPSRIRVRGPGRLFSGLPEEFTVGRYHSLFADPETLPDELLVTAETE-DGVIMAIE 683

Query: 357 LIDQPVFSVQYHPES 371
               PV +VQ+HPES
Sbjct: 684 HKTLPVAAVQFHPES 698


>gnl|CDD|116336 pfam07722, Peptidase_C26, Peptidase C26.  These peptidases have
           gamma-glutamyl hydrolase activity; that is they catalyse
           the cleavage of the gamma-glutamyl bond in
           poly-gamma-glutamyl substrates. They are structurally
           related to pfam00117, but contain extensions in four
           loops and at the C terminus.
          Length = 219

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 58/186 (31%)

Query: 232 IVGAETSYKDIMSLQPDGVLLSNGPGD---------PAVTSVYSSP--------IICKLV 274
           I+      + ++ L  DG+LL+ G  +         P+ +  Y  P        +I   +
Sbjct: 45  ILEDPEDLEALLDLV-DGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAAL 103

Query: 275 DSGMPMFGICLGHQLLGLALG---AQTVKMYQGHHGVNHPVKNISNGTVEI--------- 322
           + G P+ GIC G QLL +ALG    Q +  + G+   +H +      +  +         
Sbjct: 104 ERGKPILGICRGMQLLNVALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPGSLLA 163

Query: 323 ---------VSMNHGFAIDASSLPAGLE-ETH--------ISLFDSSNCGFRLIDQPVFS 364
                    V+  H  AI    L  GL  E          I   ++           V  
Sbjct: 164 RLLGAEEILVNSLHHQAIKR--LAPGLRVEATAPDGTIEAIESPNA--------PYFVLG 213

Query: 365 VQYHPE 370
           VQ+HPE
Sbjct: 214 VQWHPE 219


>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase
           glutamine amidotransferase component II; Validated.
          Length = 195

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
           NL++ L  LG  + +    E +  DI +++PD +++S GP  P    +    I  +    
Sbjct: 14  NLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVI--RYFAG 71

Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHG----VNHPVKNISNGTVE--IVSMNHGFA 330
            +P+FG+CLGHQ +    G + V+  +  HG    ++H  K I +        +  H   
Sbjct: 72  KIPIFGVCLGHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKTIFSDIPNPFTATRYHSLI 131

Query: 331 IDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES---SPGPQDSYYLFSTFID 387
           +   +LP  LE T     +      R    P+  VQ+HPES   S G +    L   FI 
Sbjct: 132 VKKETLPDCLEVTS-WTEEGEIMAIRHKTLPIEGVQFHPESIMTSHGKE----LLQNFIR 186

Query: 388 FMHKRKTMC 396
                 T C
Sbjct: 187 KYSPSVTSC 195


>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
           proteobacterial clade.  This model represents a small
           clade of anthranilate synthases from alpha
           proteobacteria and Nostoc (a cyanobacterium). This
           enzyme is the first step in the pathway for the
           biosynthesis of tryprophan from chorismate.
          Length = 717

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 207 HVVCIDY--GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264
            ++ +D+       L   L   G  +T +    +       +PD V+LS GPG PA   V
Sbjct: 518 RILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADFDV 577

Query: 265 YSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTV---- 320
             +  I   +  G+P+FG+CLG Q +  A G     + +  HG    ++ +    +    
Sbjct: 578 AGT--IDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGL 635

Query: 321 ---EIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
                V   H        LPA L  T  S  D           P+ +VQ+HPES
Sbjct: 636 PERLTVGRYHSLFARRDRLPAELTVTAESA-DGLIMAIEHRRLPLAAVQFHPES 688


>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated.
          Length = 184

 Score = 57.2 bits (139), Expect = 7e-09
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 39/168 (23%)

Query: 221 RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPM 280
           R L  LG    I+   T  ++I +   DG++LS GP    +    + P    L +  +P+
Sbjct: 17  RTLRYLGVDAKIIPNTTPVEEIKA-FEDGLILSGGP---DIERAGNCPEY--LKELDVPI 70

Query: 281 FGICLGHQLLGLALGAQTVKMYQGHHGV--------NHPVKNISNGTV-------EIVSM 325
            GICLGHQL+  A G +  +   G + +        +  +K +            E+  +
Sbjct: 71  LGICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDILKGLPPEIRVWASHADEVKEL 130

Query: 326 NHGFAIDASSLPAGLEETHISLFDSSNCG---FRLIDQPVFSVQYHPE 370
             GF I A                S  C     +  ++P++ VQ+HPE
Sbjct: 131 PDGFEILAR---------------SDICEVEAMKHKEKPIYGVQFHPE 163


>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase.
          Length = 222

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 14/166 (8%)

Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276
           NL + +  LGC   +    E + +++    P GVL+S GPG P  + +  S      +  
Sbjct: 33  NLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGI--SLQTVLELGP 90

Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQG-HHGVNHPVKNISNGTVEIVS---------MN 326
            +P+FG+C+G Q +G A G + V+   G  HG + PV     G   + S           
Sbjct: 91  LVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRY 150

Query: 327 HGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQP-VFSVQYHPES 371
           H   I+  + P+   E      D      R      +  VQ+HPES
Sbjct: 151 HSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPES 196


>gnl|CDD|162548 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal
           clade.  This model represents the fungal clade of a
           para-aminobenzoate synthesis enzyme,
           aminodeoxychorismate synthase, which acts on chorismate
           in a pathway that yields PABA, a precursor of folate.
          Length = 742

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 29/206 (14%)

Query: 204 AKYHVVCID-YGIRS-NLLRVL---SSLGCRITIVGAETSYKDIMSLQP--DGVLLSNGP 256
            + HV+ ID Y   + N++R+L   + +   +T V ++T    ++ L P  D +++  GP
Sbjct: 4   QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGP 63

Query: 257 GDPAVTSVYSSPI--ICKLVDSGM-PMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK 313
           G+P         I  + +L +    P+ GICLG Q L LA GA   ++    HG  + + 
Sbjct: 64  GNPNNAQ-DMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYEMH 122

Query: 314 ----NISNGTVEIVSMNHGFAIDASSLPAGLE--ETHISLF----DSSNC--GFRLIDQP 361
                I  G   + S  +       SL A  E  +T + L     +        +   +P
Sbjct: 123 TNDAAIFCGLFSVKSTRY------HSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKP 176

Query: 362 VFSVQYHPESSPGPQDSYYLFSTFID 387
            F VQYHPES      S  L S F+ 
Sbjct: 177 WFGVQYHPESCCSELGSGKLVSNFLK 202


>gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase.
          Length = 536

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 31/189 (16%)

Query: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGP------GDP 259
           V+ +DYG +   L  R +  LG    ++    S   I SL P  V+LS GP      G P
Sbjct: 13  VLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAP 72

Query: 260 AVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK------ 313
            V   +     C+  + G+P+ GIC G QL+   LG +     +  +G    ++      
Sbjct: 73  TVPEGFFD--YCR--ERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYG-RMEIRVVCGSQ 127

Query: 314 ---NISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQP---VFSVQY 367
              ++ +G  + V M+HG   +A  LP G E     +  S       I+     ++ +QY
Sbjct: 128 LFGDLPSGETQTVWMSHG--DEAVKLPEGFE----VVAKSVQGAVVAIENRERRIYGLQY 181

Query: 368 HPESSPGPQ 376
           HPE +  P+
Sbjct: 182 HPEVTHSPK 190


>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional.
          Length = 237

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 9/56 (16%)

Query: 248 DGVLLSNGPGDPA-VT-----SVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQ 297
            GV+++   G  A VT     S  ++  + +   +GMP+ GIC GHQLL  ALG +
Sbjct: 56  AGVIIT---GSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGE 108


>gnl|CDD|168720 PRK06895, PRK06895, putative anthranilate synthase component II;
           Provisional.
          Length = 190

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 280 MFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNG--------TVEIVSMNHGFAI 331
           + G+CLGHQ L    G +   +    HG   P+K  SN            I  + H +A+
Sbjct: 75  ILGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGLPEEFNI-GLYHSWAV 133

Query: 332 DASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
              + P  LE T +   ++     +    P++ VQ+HPES
Sbjct: 134 SEENFPTPLEITAVC-DENVVMAMQHKTLPIYGVQFHPES 172


>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II;
           Provisional.
          Length = 208

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 34/198 (17%)

Query: 207 HVVCIDY--GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264
           HVV ID       NL+   +  G + T+       ++I++  PD + LS GPG P     
Sbjct: 3   HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPR---- 58

Query: 265 YSSPIICKLVDSGM---PMFGICLGHQLLGLALGAQ----------TVKMYQGHHGVNHP 311
             +  +  L+D  +   P+ GICLG Q L    G +          T  M     GV  P
Sbjct: 59  -DAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEPCGPVHGTTDNMILTDAGVQSP 117

Query: 312 V---------KNISNGTVEIVSMNHGFAIDASSLPAGLEE--THISLFDSSNCGFRLIDQ 360
           V          +        V +    ++     P G+E   T  S            D 
Sbjct: 118 VFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTDG 177

Query: 361 PVFSVQYHPES--SP-GP 375
               +Q+HPES  SP GP
Sbjct: 178 KAIGLQFHPESVLSPTGP 195


>gnl|CDD|178477 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase.
          Length = 918

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 45/147 (30%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 248 DGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG 307
           D +++S GPG P   +     +   L    +P+ G+CLGHQ LG   GA+ V   +  HG
Sbjct: 133 DNIVISPGPGSPTCPADIGICLRLLLECRDIPILGVCLGHQALGYVHGARIVHAPEPVHG 192

Query: 308 ----VNHP----VKNISNGTVE--IVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRL 357
               + H       +I +G      V   H   IDA SLP   E   I+   SS+    L
Sbjct: 193 RLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPK--ELVPIAWTSSSDTLSFL 250

Query: 358 IDQPVFSVQYHPESSPGPQDSYYLFST 384
             Q    V    ES  G   S   FS+
Sbjct: 251 ESQKSGLVPDAYESQIGQSGSSDPFSS 277


>gnl|CDD|183868 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 205

 Score = 44.7 bits (107), Expect = 4e-05
 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 19/90 (21%)

Query: 211 IDYG---IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPG----DPAVTS 263
           IDYG   +RS + + L  LG    I       ++I  L  DGV+L   PG      A+ +
Sbjct: 5   IDYGMGNLRS-VEKALERLGAEAVITS---DPEEI--LAADGVIL---PGVGAFPDAMAN 55

Query: 264 VYSS---PIICKLVDSGMPMFGICLGHQLL 290
           +       +I + V SG P+ GICLG QLL
Sbjct: 56  LRERGLDEVIKEAVASGKPLLGICLGMQLL 85


>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine
           amidotransferase/anthranilate phosphoribosyltransferase;
           Provisional.
          Length = 531

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 218 NLLRVLSSLGCRITI----VGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKL 273
           NL   L S G  + I    + A+T  + + ++    ++LS GPG P+       P +   
Sbjct: 16  NLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCM--PELLTR 73

Query: 274 VDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG----VNHPVKNISNGTVEIVSMNHGF 329
           +   +P+ GICLGHQ +  A G    +  +  HG    + H  + +  G    + +    
Sbjct: 74  LRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNPLPVARYH 133

Query: 330 AIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371
           ++  S++PAGL  T  + F+      R     V   Q+HPES
Sbjct: 134 SLVGSNIPAGL--TINAHFNGMVMAVRHDADRVCGFQFHPES 173


>gnl|CDD|183869 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 200

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 17/91 (18%)

Query: 208 VVCIDYGIRSNLLRVLSSL---GCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264
           +V IDYG+  NL  V  +L   G  + I       ++I+    DG++L   PG  A  + 
Sbjct: 3   IVIIDYGV-GNLRSVSKALERAGAEVVITS---DPEEILDA--DGIVL---PGVGAFGAA 53

Query: 265 YS--SP---IICKLVDSGMPMFGICLGHQLL 290
               SP   +I +   SG P  GICLG QLL
Sbjct: 54  MENLSPLRDVILEAARSGKPFLGICLGMQLL 84


>gnl|CDD|180812 PRK07053, PRK07053, glutamine amidotransferase; Provisional.
          Length = 234

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 29/115 (25%)

Query: 275 DSGMPMFGICLGHQLLGLALGAQTVKMYQGH-------------HGVNHPVKNISNGTVE 321
            +G+P  GICLG QL+  ALGA   ++Y G               G   P++++  GT  
Sbjct: 81  AAGLPTLGICLGAQLIARALGA---RVYPGGQKEIGWAPLTLTDAGRASPLRHLGAGTP- 136

Query: 322 IVSMNHGFAIDASSLPAG---LEETHISLFDSSNCGFRLIDQPVFSVQYHPESSP 373
            V   HG   D   LP G   L  T        +  F   +  V ++Q+HPE+  
Sbjct: 137 -VLHWHG---DTFDLPEGATLLASTPA----CRHQAFAWGNH-VLALQFHPEARE 182


>gnl|CDD|168162 PRK05665, PRK05665, amidotransferase; Provisional.
          Length = 240

 Score = 37.5 bits (87), Expect = 0.006
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 272 KLVDSGMPMFGICLGHQLLGLALGAQTVKMYQG 304
           KL + G  + G+C GHQLL L LG +  +  QG
Sbjct: 86  KLYERGDKLLGVCFGHQLLALLLGGKAERASQG 118


>gnl|CDD|181323 PRK08250, PRK08250, glutamine amidotransferase; Provisional.
          Length = 235

 Score = 36.9 bits (86), Expect = 0.009
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)

Query: 255 GPGDPAVT----SVYSSP----IICKLVDSGMPMFGICLGHQLLGLALGAQ 297
           GP  P  T      + S     +I + + +G  + G+CLG QL+G ALGA+
Sbjct: 54  GPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAK 104


>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 199

 Score = 34.5 bits (80), Expect = 0.049
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 19/93 (20%)

Query: 208 VVCIDYG---IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPG----DPA 260
           +  IDYG   +RS +   L  LG    +    +S  + ++   D V+L   PG      A
Sbjct: 2   IAIIDYGAGNLRS-VANALKRLGVEAVV----SSDPEEIAGA-DKVIL---PGVGAFGQA 52

Query: 261 VTSVYSS---PIICKLVDSGMPMFGICLGHQLL 290
           + S+  S     + + V+   P+ GICLG QLL
Sbjct: 53  MRSLRESGLDEALKEHVEKKQPVLGICLGMQLL 85


>gnl|CDD|162563 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
           glutamine amidotransferase subunit.  This model
           represents the glutamine amidotransferase subunit (or
           domain, in eukaryotic systems) of imidazole glycerol
           phosphate synthase. This subunit catalyzes step 5 of
           histidine biosynthesis from PRPP. The other subunit, the
           cyclase, catalyzes step 6.
          Length = 196

 Score = 33.8 bits (78), Expect = 0.087
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 21/95 (22%)

Query: 208 VVCIDYGIRSNLLRVLSSLGCRITIVGAET----SYKDIMSLQPDGVLLSNGPGDPAVTS 263
           +V IDYG+  NL  V  +L      VGAE       K+      D ++L   PG  A  +
Sbjct: 1   IVIIDYGV-GNLGSVKRAL----KRVGAEPVVVKDSKEAE--LADKLIL---PGVGAFGA 50

Query: 264 VYS-------SPIICKLVDSGMPMFGICLGHQLLG 291
             +          +  +V  G P+ GICLG QLL 
Sbjct: 51  AMARLRENGLDLFVELVVRLGKPVLGICLGMQLLF 85


>gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 209

 Score = 32.1 bits (74), Expect = 0.29
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 26/98 (26%)

Query: 208 VVCIDYG---IRS---NLLRVLSSLGCRITIVGAETS-YKDIMSLQPDGVLLSNGPGDPA 260
           V  IDYG   +RS    L R     G  + +    T+    + +   D V+L   PG  A
Sbjct: 4   VAIIDYGSGNLRSAAKALERA--GAGADVVV----TADPDAVAA--ADRVVL---PGVGA 52

Query: 261 --------VTSVYSSPIICKLVDSGMPMFGICLGHQLL 290
                           +I  ++ +G P  GIC+G QLL
Sbjct: 53  FADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLL 90


>gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 210

 Score = 31.0 bits (70), Expect = 0.51
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 237 TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSS---PIICKLVDSGMPMFGICLGHQLL 290
           TS  + +      +L  +G  D A+ ++ S+     I K V+SG P+FGIC+G Q+L
Sbjct: 29  TSDPETIENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQIL 85


>gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional.
          Length = 239

 Score = 30.7 bits (70), Expect = 0.64
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 14/44 (31%)

Query: 279 PMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEI 322
           P  GICLG Q+L   LGA+       H           +G VEI
Sbjct: 88  PFLGICLGAQMLARHLGARV----APHP----------DGRVEI 117


>gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
          Length = 1485

 Score = 30.6 bits (70), Expect = 0.78
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%)

Query: 44  SLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSE------DFE 80
           S+ G++E+ T+PS LG+I   + P I  V VN+       DFE
Sbjct: 115 SVVGWREVPTNPSVLGEIALSSLPRIEQVFVNAPAGWRERDFE 157


>gnl|CDD|181035 PRK07567, PRK07567, glutamine amidotransferase; Provisional.
          Length = 242

 Score = 30.3 bits (69), Expect = 0.92
 Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 52/157 (33%)

Query: 248 DGVLLSNGPG---DPAVTSVYS----------SPIICKLVDSGMPMFGICLGHQLLGLAL 294
            GV++   P    DPA +   S          S ++ ++V    P  G C G   LG   
Sbjct: 53  SGVIVGGSPFNVSDPAES--KSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQ 110

Query: 295 GAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFA----------IDA--------SSL 336
           G    + Y        PV     G V +   + G A            A        S+L
Sbjct: 111 GGVVDRTY------GEPV-----GAVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSAL 159

Query: 337 PAGLEETHISLFDSSNC---GFRLIDQPVFSVQYHPE 370
           P G     + L  S  C    FR + + V++ Q+HPE
Sbjct: 160 PPG----AVLLATSPTCPVQMFR-VGENVYATQFHPE 191


>gnl|CDD|116299 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase
           domain. 
          Length = 158

 Score = 29.5 bits (67), Expect = 1.4
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 272 KLVDSGMPMFGICLGHQLLGLAL-----GAQTVKMYQG-----HHGVNHPVKNISNGTVE 321
           +  ++G P+ GIC G+Q+LG  +     G    +  +G        V    K +     E
Sbjct: 37  EHAEAGGPILGICGGYQMLGETIIDGIEGTAGGERVEGLGLLDIETVFQKEKTLGYVEGE 96

Query: 322 IVSMNHGFAI 331
            +  N G  +
Sbjct: 97  SLLFNKGEEV 106


>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
          Length = 538

 Score = 29.7 bits (67), Expect = 1.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 270 ICKLVDSGMPMFGICLGHQLL 290
           + + + +  P  GICLG QLL
Sbjct: 72  LREYIQNDRPFLGICLGLQLL 92


>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 196

 Score = 29.4 bits (67), Expect = 1.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)

Query: 279 PMFGICLGHQLLG 291
           P+ GICLG QLLG
Sbjct: 72  PVLGICLGMQLLG 84


>gnl|CDD|162104 TIGR00915, 2A0602, The (Largely Gram-negative Bacterial)
           Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.  This
           family is one of several subfamilies within the scope of
           pfam model pfam00873.
          Length = 1044

 Score = 29.3 bits (66), Expect = 1.9
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 42  NTSLTGYQEILTDPSYLGQIV--------NFTFPHIGNVGVNSEDFESISRKNFKGAVGL 93
           N ++   Q  L  P     I+              +  V +  E++   +R N K A GL
Sbjct: 231 NATIIA-QTRLQTPEQFEDILLKVNTDGSQVRLKDVARVELGGENYSISARFNGKPASGL 289

Query: 94  VIK 96
            IK
Sbjct: 290 AIK 292


>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1
          component.  The E1 ortholog from Corynebacterium
          glutamicum is unusual in having an N-terminal extension
          that resembles the dihydrolipoamide succinyltransferase
          (E2) component of 2-oxoglutarate dehydrogenase.
          Length = 929

 Score = 29.1 bits (65), Expect = 2.0
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 48 YQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAVG 92
          Y++ LTDP  +      TF  +   G   + F S +R  F+    
Sbjct: 14 YEDYLTDPDSVDASWRSTFDQLPGPGPAPDQFHSPTRSYFRRLAK 58


>gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional.
          Length = 488

 Score = 28.9 bits (66), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 270 ICKLVDSGMPMFGICLGHQLLG 291
           I      G P+ GIC G+Q+LG
Sbjct: 318 IRAHARRGGPVLGICGGYQMLG 339


>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional.
          Length = 210

 Score = 28.8 bits (64), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 77  EDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLK 116
           E F SI+R  ++GA G ++  +IT    +    H  +WL+
Sbjct: 66  ESFRSITRSYYRGAAGALLVYDITRRETFN---HLASWLE 102


>gnl|CDD|179238 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I;
           Provisional.
          Length = 261

 Score = 28.2 bits (63), Expect = 4.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 270 ICKLVDSGMPMFGICLGHQLLGLALGA 296
           I + +D G P+ GIC G Q+L + LG 
Sbjct: 82  IEEFIDEGYPIIGICNGFQVL-VELGL 107


>gnl|CDD|180047 PRK05380, pyrG, CTP synthetase; Validated.
          Length = 533

 Score = 28.1 bits (64), Expect = 4.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 277 GMPMFGICLGHQL 289
            +P  GICLG QL
Sbjct: 372 NIPFLGICLGMQL 384


>gnl|CDD|130550 TIGR01486, HAD-SF-IIB-MPGP, mannosyl-3-phosphoglycerate phosphatase
           family.  This small group of proteins is a member of the
           IIB subfamily (TIGR01484) of the Haloacid Dehalogenase
           (HAD) superfamily of aspartate-nucleophile hydrolases.
           Several members of this family from thermophiles (and
           from Dehalococcoides ethenogenes) are now known to act
           as mannosyl-3-phosphoglycerate (MPG) phosphatase. In
           these cases, the enzyme acts after MPG synthase to make
           the compatible solute mannosylglycerate. We propose that
           other mesophilic members of this family do not act as
           mannosyl-3-phosphoglycerate phosphatase. A member of
           this family is found in Escherichia coli, which appears
           to lack MPG synthase. Mannosylglycerate is imported in
           E. coli by phosphoenolpyruvate-dependent transporter
           (PubMed:14645248), but it appears the phosphorylation is
           not on the glycerate moiety, that the phosphorylated
           import is degraded by an alpha-mannosidase from an
           adjacent gene, and that E. coli would have no pathway to
           obtain MPG.
          Length = 256

 Score = 28.1 bits (63), Expect = 4.2
 Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 25/121 (20%)

Query: 159 KERAKNWSGLKG--AELAKHVTVSQRRDWSEKIWKWGEE--TSFLKSSDAK--------- 205
                  +GL    A LA      QRR++SE I  W EE    F ++             
Sbjct: 114 DAEIAELTGLSRELAALA------QRREYSETIL-WSEERRERFTEALVELGLEVTHGNR 166

Query: 206 -YHVVCI--DYGIRSNLLRVLSSL-GCRITIVGAETSYKDI-MSLQPDGVLLSNGPGDPA 260
            YHV+    D G  +N L+   +  G  I +VG   S  D+ +    D  ++  GP  P 
Sbjct: 167 FYHVLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPN 226

Query: 261 V 261
           V
Sbjct: 227 V 227


>gnl|CDD|150429 pfam09754, PAC2, PAC2 family.  This PAC2 (Proteasome assembly
           chaperone) family of proteins is found in bacteria,
           archaea and eukaryotes. Proteins in this family are
           typically between 247 and 307 amino acids in length.
           These proteins function as a chaperone for the 26S
           proteasome. The 26S proteasome mediates
           ubiquitin-dependent proteolysis in eukaryotic cells. A
           number of studies including very recent ones have
           revealed that assembly of its 20S catalytic core
           particle is an ordered process that involves several
           conserved proteasome assembly chaperones (PACs). Two
           heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4,
           promote the assembly of rings composed of seven alpha
           subunits.
          Length = 177

 Score = 28.0 bits (63), Expect = 4.3
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 25/97 (25%)

Query: 93  LVIKAEITEPSNYRANMHFDA---WLKSCG---IIGLSGIDTRALTVWIRDYGVSNS--V 144
           LV++    EP   R     +A     +  G   +I L G+            G + S  +
Sbjct: 70  LVLQGRSPEP-PGRWYEFAEAILDLAEELGVSEVITLGGLPAGVPHTRPPVTGAATSPEL 128

Query: 145 IAHHPDG----------------QFDLEDLKERAKNW 165
           I    D                 +  L++L+E A N 
Sbjct: 129 IEELEDPKAALALLEALSKLLGLEVPLDELEEEADNI 165


>gnl|CDD|114645 pfam05934, MCLC, Mid-1-related chloride channel (MCLC).  This
           family consists of several mid-1-related chloride
           channels. mid-1-related chloride channel (MCLC) proteins
           function as a chloride channel when incorporated in the
           planar lipid bilayer.
          Length = 577

 Score = 27.8 bits (61), Expect = 5.3
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)

Query: 171 AELAK----HVTVSQRRDWSEKIWKW 192
           AELAK        +++ DWSE I+ W
Sbjct: 262 AELAKLEDFDKVCAKKIDWSESIFDW 287


>gnl|CDD|165993 PLN02352, PLN02352, phospholipase D epsilon.
          Length = 758

 Score = 27.6 bits (61), Expect = 5.6
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAG 339
           +G Q+  +  G + V M +G H VN+P+    +G VE ++   G   D  +   G
Sbjct: 693 IGEQMWEIYSGEEVVDM-EGVHLVNYPISVTKDGAVEDLADGDGNFPDTKTPVKG 746


>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
           Reviewed.
          Length = 561

 Score = 27.4 bits (61), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 171 AELAKHVTVSQRRDWSEKIWKWGEE 195
             L K+V    R++W +KI +W +E
Sbjct: 330 KSLIKYVQYCDRKEWLDKINQWKKE 354


>gnl|CDD|162798 TIGR02291, rimK_rel_E_lig, alpha-L-glutamate ligase-related
           protein.  Members of this protein family contain a
           region of homology to the RimK family of
           alpha-L-glutamate ligases (TIGR00768), various members
           of which modify the Glu-Glu C-terminus of ribosomal
           protein S6, or tetrahydromethanopterin, or a form of
           coenzyme F420 derivative. Members of this family are
           found so far in various Vibrio and Pseudomonas species
           and some other gamma and beta Proteobacteria. The
           function is unknown.
          Length = 317

 Score = 27.5 bits (61), Expect = 6.0
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%)

Query: 100 TEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLK 159
           T  S+ +AN+H  A     GI   +G   RA  VW       N  I HHPD   DL  L+
Sbjct: 177 TRASDGKANLHQGA--VGVGIDLATGKTIRA--VWF------NQPITHHPDTGKDLSGLQ 226

Query: 160 ERAKNWSGL 168
               +W  L
Sbjct: 227 --VPHWERL 233


>gnl|CDD|179609 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I;
           Provisional.
          Length = 219

 Score = 27.4 bits (62), Expect = 7.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)

Query: 267 SPI---ICKLVDSGMPMFGICLGHQLL---GLALGA 296
           SPI   + +  + G P+ GIC G Q+L   GL  GA
Sbjct: 66  SPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGA 101


>gnl|CDD|163512 TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate synthase,
           glutaminase subunit Pdx2.  Pyridoxal 5'-phosphate (PLP)
           is synthesized by the PdxA/PdxJ pathway in some species
           (mostly within the gamma subdivision of the
           proteobacteria) and by the Pdx1/Pdx2 pathway in most
           other organisms. This family describes Pdx2, the
           glutaminase subunit of the PLP synthase.
          Length = 184

 Score = 27.0 bits (60), Expect = 8.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 272 KLVDSGMPMFGICLGHQLL 290
             + SG+P+FG C G  +L
Sbjct: 65  NFILSGLPVFGTCAGLIML 83


>gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase.
          Length = 606

 Score = 27.2 bits (60), Expect = 8.2
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 112 DAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKER---AKNWSGL 168
           D W + C     S I T  ++ WI D    N+V +       +L DL E     K+W G+
Sbjct: 233 DHWKELC-----SNIRTGCVSDWITDPSCRNAVSSILSKPNSELADLIESECSGKSWEGI 287


>gnl|CDD|161825 TIGR00337, PyrG, CTP synthase.  CTP synthase is involved in
           pyrimidine ribonucleotide/ribonucleoside metabolism. The
           enzyme catalyzes the reaction L-glutamine + H2O + UTP +
           ATP = CTP + phosphate + ADP + L-glutamate. The enzyme
           exists as a dimer of identical chains that aggregates as
           a tetramer. This gene has been found circa 500 bp 5'
           upstream of enolase in both beta (Nitrosomonas europaea)
           and gamma (E.coli) subdivisions of proteobacterium (FEMS
           Microbiol Lett 1998 Aug 1;165(1):153-7).
          Length = 525

 Score = 26.9 bits (60), Expect = 9.3
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 355 FRLIDQPVF-SVQYHPESSPGPQDSYYLFSTFI 386
             L D P F + Q+HPE +  P   + LF  F+
Sbjct: 491 IELPDHPFFVACQFHPEFTSRPNRPHPLFLGFV 523


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,490,931
Number of extensions: 412534
Number of successful extensions: 876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 63
Length of query: 396
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 301
Effective length of database: 3,941,713
Effective search space: 1186455613
Effective search space used: 1186455613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)