RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter asiaticus str. psy62] (396 letters) >gnl|CDD|183597 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed. Length = 360 Score = 551 bits (1424), Expect = e-158 Identities = 195/379 (51%), Positives = 245/379 (64%), Gaps = 20/379 (5%) Query: 11 KPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIG 70 A LVL DG+V EG GA G E+ FNTS+TGYQEILTDPSY GQIV FT+P IG Sbjct: 2 MMKAYLVLEDGTVFEGKAFGAEGETVGEVVFNTSMTGYQEILTDPSYAGQIVTFTYPLIG 61 Query: 71 NVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRA 130 N GVN EDFES A GL+++ PSN+R+ M D +LK GI G+SGIDTRA Sbjct: 62 NYGVNREDFESDRPH----AKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTRA 117 Query: 131 LTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIW 190 LT +R+ G VIA FD E+L E+A+ + GL G +L K V+ + W Sbjct: 118 LTRKLREKGAMKGVIAT---EDFDAEELLEKARAFPGLLGLDLVKEVSTKEPYPWPGP-- 172 Query: 191 KWGEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGV 250 + KY VV ID+G++ N+LR L+ GCR+T+V A T+ ++I++L PDGV Sbjct: 173 ----------GGELKYKVVAIDFGVKRNILRELAERGCRVTVVPATTTAEEILALNPDGV 222 Query: 251 LLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNH 310 LSNGPGDPA Y+ +I +L++ +P+FGICLGHQLL LALGA+T KM GH G NH Sbjct: 223 FLSNGPGDPAAL-DYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGHRGANH 281 Query: 311 PVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370 PVK++ G VEI S NHGFA+D SLPA LE TH++L D + G R D P FSVQYHPE Sbjct: 282 PVKDLETGKVEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPE 341 Query: 371 SSPGPQDSYYLFSTFIDFM 389 +SPGP DS YLF F++ M Sbjct: 342 ASPGPHDSAYLFDEFVELM 360 >gnl|CDD|162320 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. Length = 358 Score = 432 bits (1113), Expect = e-122 Identities = 178/379 (46%), Positives = 226/379 (59%), Gaps = 22/379 (5%) Query: 14 AVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG 73 A LVL DG+V G GA G++ E+ FNT +TGYQEILTDPSY GQIV FT+P IGN G Sbjct: 1 AYLVLEDGTVFRGYSFGAEGTVAGEVVFNTGMTGYQEILTDPSYKGQIVVFTYPLIGNYG 60 Query: 74 VNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTV 133 VN ED ES GLV++ SN+RA D +LK GI G+ G+DTRAL Sbjct: 61 VNDEDAESKGIH----VSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTRALVK 116 Query: 134 WIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKWG 193 IR+ G VI+ + E+L ++A + G L V+ + + WG Sbjct: 117 KIREKGTMKGVISTED---SNDEELVQKASVSPDIDGINLVAEVSTK-------EPYTWG 166 Query: 194 EETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLS 253 + K K VV ID+G++ N+LR L GC +T+V +T ++I PDG+ LS Sbjct: 167 Q-----KRGGKKKRVVVIDFGVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLS 221 Query: 254 NGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK 313 NGPGDPA I + + +P+FGICLGHQLL LA GA+T KM GH G NHPVK Sbjct: 222 NGPGDPAAVEPAIETI--RKLLEKIPIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVK 279 Query: 314 NISNGTVEIVSMNHGFAIDASSLPAG-LEETHISLFDSSNCGFRLIDQPVFSVQYHPESS 372 ++ G VEI S NHG+A+D SLPAG LE TH++L D + G R D PVFSVQYHPE+S Sbjct: 280 DLITGRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEAS 339 Query: 373 PGPQDSYYLFSTFIDFMHK 391 PGP D+ YLF FID + K Sbjct: 340 PGPHDTEYLFDEFIDLIKK 358 >gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed. Length = 354 Score = 369 bits (949), Expect = e-103 Identities = 154/382 (40%), Positives = 211/382 (55%), Gaps = 32/382 (8%) Query: 14 AVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFTFPHIGNVG 73 A L+L DG+V EG GA + EI FNT +TGYQE+LTDPSY GQIV FT+P IGN G Sbjct: 3 AYLILEDGTVFEGELIGAPIDVTGEIVFNTGMTGYQEVLTDPSYKGQIVVFTYPLIGNYG 62 Query: 74 VNSEDFESISRKNFKGAVGLVIKAEI-TEPSNYRANMHFDAWLKSCGIIGLSGIDTRALT 132 +N++D+ES + V VI E+ E S+YRA D +LK I G+SG+DTRAL Sbjct: 63 INADDYESK-----QPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTRALV 117 Query: 133 VWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDWSEKIWKW 192 IR+ G + I D + + + V+ Sbjct: 118 KHIREKGTMKASITTTDDAHAFDQIKA-------LVLPKNVVAQVSTK------------ 158 Query: 193 GEETSFLKSSDAKYHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLL 252 E + HV ID+G + ++LR LS GC++T++ +TS ++I +L PDG++L Sbjct: 159 --EPYTYGNGG--KHVALIDFGYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVL 214 Query: 253 SNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPV 312 SNGPGDP Y I K + S P+ GICLGHQL+ LALGA T K+ GH G NHPV Sbjct: 215 SNGPGDPKELQPYLPEI--KKLISSYPILGICLGHQLIALALGADTEKLPFGHRGANHPV 272 Query: 313 KNISNGTVEIVSMNHGFAIDASSL-PAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371 +++ G V + S NHG+ +D SL L ++ D S G R +PV SVQ+HPE+ Sbjct: 273 IDLTTGRVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEA 332 Query: 372 SPGPQDSYYLFSTFIDFMHKRK 393 PGP D+ Y+F F++ M K + Sbjct: 333 HPGPHDAEYIFDEFLEMMEKAR 354 >gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing). Length = 415 Score = 304 bits (779), Expect = 4e-83 Identities = 168/375 (44%), Positives = 228/375 (60%), Gaps = 16/375 (4%) Query: 6 PWTIKKPTAVLVLADGSVIEGMGCGATGSIQAEICFNTSLTGYQEILTDPSYLGQIVNFT 65 PW K A LVL DGSV + GA G+ E+ FNTSLTGYQEILTDPSY GQ V T Sbjct: 51 PW--KTSDARLVLEDGSVWKAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMT 108 Query: 66 FPHIGNVGVNSEDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLKSCGIIGLSG 125 PHIGN GVN +D ES R+ F GLVI++ SN+R +L I+G+ Sbjct: 109 NPHIGNTGVNFDDEES--RQCF--LAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYD 164 Query: 126 IDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKERAKNWSGLKGAELAKHVTVSQRRDW 185 +DTRA+T +R+ G V++ D + D E+L + +++W + G +L V+ +W Sbjct: 165 VDTRAITRRLREDGSLIGVLSTE-DSKTD-EELLKMSRSWD-IVGIDLISGVSCKSPYEW 221 Query: 186 SEKIWKWGEETSFLKSSDAK--YHVVCIDYGIRSNLLRVLSSLGCRITIVGAETSYKDIM 243 +K E F +S YHV+ D+GI+ N+LR L+S GC+IT+V + + + Sbjct: 222 VDKT---NPEWDFNTNSRDGESYHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEAL 278 Query: 244 SLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQ 303 ++PDGVL SNGPGDP+ Y+ + +L+ +P+FGIC+GHQLLG ALG +T KM Sbjct: 279 KMKPDGVLFSNGPGDPSAVP-YAVETVKELLGK-VPVFGICMGHQLLGQALGGKTFKMKF 336 Query: 304 GHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVF 363 GHHG NHPV+N G VEI + NH +A+D +SLP G+E TH++L D S G V Sbjct: 337 GHHGGNHPVRNNRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVM 396 Query: 364 SVQYHPESSPGPQDS 378 S+QYHPE+SPGP DS Sbjct: 397 SLQYHPEASPGPHDS 411 >gnl|CDD|180190 PRK05670, PRK05670, anthranilate synthase component II; Provisional. Length = 189 Score = 80.6 bits (200), Expect = 7e-16 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%) Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276 NL++ L LG + + E + ++I +L PD ++LS GPG PA S + + Sbjct: 14 NLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPA--EAGISLELIREFAG 71 Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPV--------KNISNGTVEIVSMNHG 328 +P+ G+CLGHQ +G A G + V+ + HG P+ + N V+ H Sbjct: 72 KVPILGVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGSGIFAGLPNPFT--VTRYHS 129 Query: 329 FAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371 +D SLP LE T + D G R + P++ VQ+HPES Sbjct: 130 LVVDRESLPDCLEVTAWT-DDGEIMGVRHKELPIYGVQFHPES 171 >gnl|CDD|184763 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional. Length = 534 Score = 73.6 bits (181), Expect = 9e-14 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 218 NLLRVLSSLGC-RITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVD 275 N+ + + LG I +V E + ++I +L P +++S GPG P + S +I Sbjct: 14 NIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGI-SVEVIRHFSG 72 Query: 276 SGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMN------HGF 329 +P+ G+CLGHQ +G A G + V + HG P+ + G + H Sbjct: 73 K-VPILGVCLGHQAIGYAFGGKIVHAKRILHGKTSPIDHNGKGLFRGIPNPTVATRYHSL 131 Query: 330 AIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371 ++ +SLP LE T S D G R + P+F VQ+HPES Sbjct: 132 VVEEASLPECLEVTAKSD-DGEIMGIRHKEHPIFGVQFHPES 172 >gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional. Length = 191 Score = 72.2 bits (177), Expect = 2e-13 Identities = 52/164 (31%), Positives = 70/164 (42%), Gaps = 12/164 (7%) Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276 NL + LG + + E DI L P +++S GP P + S +I D Sbjct: 14 NLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGI-SLAVIRHFADK 72 Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330 +P+ G+CLGHQ LG A GA+ V+ Q HG + + G V+ H Sbjct: 73 -LPILGVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQPLTVTRYHSLV 131 Query: 331 IDASSLPAGLEETHISLFDSSN---CGFRLIDQPVFSVQYHPES 371 I A SLP E T S G R P+ VQ+HPES Sbjct: 132 IAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPES 175 >gnl|CDD|161933 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase. Length = 188 Score = 71.0 bits (174), Expect = 5e-13 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 9/161 (5%) Query: 218 NLLRVLSSLGCRITIVGAETSY-KDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276 NL++ LG + + ++ ++I +L P +++S GP P + I + Sbjct: 14 NLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAI--RHFAG 71 Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330 +P+ G+CLGHQ +G A G V+ HG +++ G + H Sbjct: 72 KLPILGVCLGHQAMGQAFGGDVVRANTVMHGKTSEIEHNGAGIFRGLFNPLTATRYHSLV 131 Query: 331 IDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371 ++ +LP T + R D P+ VQ+HPES Sbjct: 132 VEPETLPTCFPVTAWEEENIEIMAIRHRDLPLEGVQFHPES 172 >gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. Length = 188 Score = 69.3 bits (170), Expect = 2e-12 Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 23/176 (13%) Query: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY 265 ++ +D+G + L R L LG +V T ++I P G++LS GP SVY Sbjct: 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPS-----SVY 55 Query: 266 S--SP-IICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG------VNHPV--KN 314 + +P K+ + G+P+ GIC G QL+ LG + + + +G ++ + Sbjct: 56 AENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRG 115 Query: 315 ISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370 + + V M+HG + LP G + S + ++P++ VQ+HPE Sbjct: 116 LPD--ESTVWMSHGDKVKE--LPEGFKVLATSD-NCPVAAMAHEEKPIYGVQFHPE 166 >gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional. Length = 214 Score = 69.3 bits (170), Expect = 2e-12 Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 248 DGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG 307 DGVLLS GPG P S ++ +G P+ G+CLGHQ +G+A GA + + HG Sbjct: 48 DGVLLSPGPGTPERAGA-SIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELLHG 106 Query: 308 VNHPVKNISNGTVE------IVSMNHGFAIDASSLPAGLEETHISLFDSSNC-GFRLIDQ 360 V + G + + H I +LPA LE T + DS R + Sbjct: 107 KTSSVHHTGVGVLAGLPDPFTATRYHSLTILPETLPAELEVTART--DSGVIMAVRHREL 164 Query: 361 PVFSVQYHPES 371 P+ VQ+HPES Sbjct: 165 PIHGVQFHPES 175 >gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional. Length = 193 Score = 66.4 bits (162), Expect = 1e-11 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 14/180 (7%) Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276 NL + LG ++ +V E I +L P +++S GP P + I + Sbjct: 14 NLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAI--EHFAG 71 Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330 +P+ G+CLGHQ + G Q V+ Q HG P+++ + V+ H Sbjct: 72 KLPILGVCLGHQAIAQVFGGQVVRARQVMHGKTSPIRHTGRSVFKGLNNPLTVTRYHSLV 131 Query: 331 IDASSLPAGLEETHISLFDSSN----CGFRLIDQPVFSVQYHPESSPGPQDSYYLFSTFI 386 + +LP E T + + + GF+ P+ +VQ+HPES Q + L + F+ Sbjct: 132 VKNDTLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQ-GHQLLANFL 190 >gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional. Length = 187 Score = 64.2 bits (156), Expect = 6e-11 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276 NL + LG + + + DI +L+P +++S GP P + S + + Sbjct: 14 NLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI--SLDVIRHYAG 71 Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVE------IVSMNHGFA 330 +P+ G+CLGHQ + A G + V+ + HG P+ + G V+ H Sbjct: 72 RLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLANPLTVTRYHSLV 131 Query: 331 IDASSLPAGLEETHISLFDSSNC-GFRLIDQPVFSVQYHPES 371 ++ SLPA E T S ++ G R + VQ+HPES Sbjct: 132 VEPDSLPACFEVTAWS--ETREIMGIRHRQWDLEGVQFHPES 171 >gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed. Length = 511 Score = 61.2 bits (150), Expect = 5e-10 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 27/153 (17%) Query: 232 IVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYS--SPIICKLV-DSGMPMFGICLGHQ 288 IV + S ++I + P G++LS GP SVY +P + + G+P+ GIC G Q Sbjct: 32 IVPYDISAEEIRAFNPKGIILSGGP-----ASVYEEGAPRADPEIFELGVPVLGICYGMQ 86 Query: 289 LLGLALGAQTVKMYQGHHG--------VNHP---VKNISNGTVEIVSMNHGFAIDASSLP 337 L+ LG + + V++ K + + V M+HG + LP Sbjct: 87 LMAHQLGGKVER---AGKREYGRAELEVDNDSPLFKGLPEE--QDVWMSHGDKVTE--LP 139 Query: 338 AGLEETHISLFDSSNCGFRLIDQPVFSVQYHPE 370 G + + + ++ + VQ+HPE Sbjct: 140 EGFKVIASTE-NCPIAAIANEERKFYGVQFHPE 171 >gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional. Length = 720 Score = 59.2 bits (144), Expect = 2e-09 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 10/135 (7%) Query: 244 SLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQ 303 + PD V+LS GPG P+ ++ I + +P+FG+CLG Q + A G + ++ Sbjct: 567 RVNPDLVVLSPGPGRPSDFDCKAT--IDAALARNLPIFGVCLGLQAIVEAFGGELGQLAY 624 Query: 304 GHHGVNHPVKNISNGTV------EI-VSMNHGFAIDASSLPAGLEETHISLFDSSNCGFR 356 HG ++ G + E V H D +LP L T + D Sbjct: 625 PMHGKPSRIRVRGPGRLFSGLPEEFTVGRYHSLFADPETLPDELLVTAETE-DGVIMAIE 683 Query: 357 LIDQPVFSVQYHPES 371 PV +VQ+HPES Sbjct: 684 HKTLPVAAVQFHPES 698 >gnl|CDD|116336 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219 Score = 58.8 bits (143), Expect = 2e-09 Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 58/186 (31%) Query: 232 IVGAETSYKDIMSLQPDGVLLSNGPGD---------PAVTSVYSSP--------IICKLV 274 I+ + ++ L DG+LL+ G + P+ + Y P +I + Sbjct: 45 ILEDPEDLEALLDLV-DGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAAL 103 Query: 275 DSGMPMFGICLGHQLLGLALG---AQTVKMYQGHHGVNHPVKNISNGTVEI--------- 322 + G P+ GIC G QLL +ALG Q + + G+ +H + + + Sbjct: 104 ERGKPILGICRGMQLLNVALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPGSLLA 163 Query: 323 ---------VSMNHGFAIDASSLPAGLE-ETH--------ISLFDSSNCGFRLIDQPVFS 364 V+ H AI L GL E I ++ V Sbjct: 164 RLLGAEEILVNSLHHQAIKR--LAPGLRVEATAPDGTIEAIESPNA--------PYFVLG 213 Query: 365 VQYHPE 370 VQ+HPE Sbjct: 214 VQWHPE 219 >gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated. Length = 195 Score = 57.9 bits (140), Expect = 4e-09 Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276 NL++ L LG + + E + DI +++PD +++S GP P + I + Sbjct: 14 NLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVI--RYFAG 71 Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQGHHG----VNHPVKNISNGTVE--IVSMNHGFA 330 +P+FG+CLGHQ + G + V+ + HG ++H K I + + H Sbjct: 72 KIPIFGVCLGHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKTIFSDIPNPFTATRYHSLI 131 Query: 331 IDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES---SPGPQDSYYLFSTFID 387 + +LP LE T + R P+ VQ+HPES S G + L FI Sbjct: 132 VKKETLPDCLEVTS-WTEEGEIMAIRHKTLPIEGVQFHPESIMTSHGKE----LLQNFIR 186 Query: 388 FMHKRKTMC 396 T C Sbjct: 187 KYSPSVTSC 195 >gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. Length = 717 Score = 58.0 bits (140), Expect = 5e-09 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 12/174 (6%) Query: 207 HVVCIDY--GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264 ++ +D+ L L G +T + + +PD V+LS GPG PA V Sbjct: 518 RILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADFDV 577 Query: 265 YSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTV---- 320 + I + G+P+FG+CLG Q + A G + + HG ++ + + Sbjct: 578 AGT--IDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGL 635 Query: 321 ---EIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371 V H LPA L T S D P+ +VQ+HPES Sbjct: 636 PERLTVGRYHSLFARRDRLPAELTVTAESA-DGLIMAIEHRRLPLAAVQFHPES 688 >gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated. Length = 184 Score = 57.2 bits (139), Expect = 7e-09 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 39/168 (23%) Query: 221 RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPM 280 R L LG I+ T ++I + DG++LS GP + + P L + +P+ Sbjct: 17 RTLRYLGVDAKIIPNTTPVEEIKA-FEDGLILSGGP---DIERAGNCPEY--LKELDVPI 70 Query: 281 FGICLGHQLLGLALGAQTVKMYQGHHGV--------NHPVKNISNGTV-------EIVSM 325 GICLGHQL+ A G + + G + + + +K + E+ + Sbjct: 71 LGICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDILKGLPPEIRVWASHADEVKEL 130 Query: 326 NHGFAIDASSLPAGLEETHISLFDSSNCG---FRLIDQPVFSVQYHPE 370 GF I A S C + ++P++ VQ+HPE Sbjct: 131 PDGFEILAR---------------SDICEVEAMKHKEKPIYGVQFHPE 163 >gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase. Length = 222 Score = 55.6 bits (134), Expect = 2e-08 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 14/166 (8%) Query: 218 NLLRVLSSLGCRITIV-GAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKLVDS 276 NL + + LGC + E + +++ P GVL+S GPG P + + S + Sbjct: 33 NLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGI--SLQTVLELGP 90 Query: 277 GMPMFGICLGHQLLGLALGAQTVKMYQG-HHGVNHPVKNISNGTVEIVS---------MN 326 +P+FG+C+G Q +G A G + V+ G HG + PV G + S Sbjct: 91 LVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRY 150 Query: 327 HGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQP-VFSVQYHPES 371 H I+ + P+ E D R + VQ+HPES Sbjct: 151 HSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPES 196 >gnl|CDD|162548 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742 Score = 54.5 bits (131), Expect = 5e-08 Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 29/206 (14%) Query: 204 AKYHVVCID-YGIRS-NLLRVL---SSLGCRITIVGAETSYKDIMSLQP--DGVLLSNGP 256 + HV+ ID Y + N++R+L + + +T V ++T ++ L P D +++ GP Sbjct: 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGP 63 Query: 257 GDPAVTSVYSSPI--ICKLVDSGM-PMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK 313 G+P I + +L + P+ GICLG Q L LA GA ++ HG + + Sbjct: 64 GNPNNAQ-DMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYEMH 122 Query: 314 ----NISNGTVEIVSMNHGFAIDASSLPAGLE--ETHISLF----DSSNC--GFRLIDQP 361 I G + S + SL A E +T + L + + +P Sbjct: 123 TNDAAIFCGLFSVKSTRY------HSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKP 176 Query: 362 VFSVQYHPESSPGPQDSYYLFSTFID 387 F VQYHPES S L S F+ Sbjct: 177 WFGVQYHPESCCSELGSGKLVSNFLK 202 >gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase. Length = 536 Score = 51.6 bits (124), Expect = 3e-07 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 31/189 (16%) Query: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGP------GDP 259 V+ +DYG + L R + LG ++ S I SL P V+LS GP G P Sbjct: 13 VLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAP 72 Query: 260 AVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVK------ 313 V + C+ + G+P+ GIC G QL+ LG + + +G ++ Sbjct: 73 TVPEGFFD--YCR--ERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYG-RMEIRVVCGSQ 127 Query: 314 ---NISNGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQP---VFSVQY 367 ++ +G + V M+HG +A LP G E + S I+ ++ +QY Sbjct: 128 LFGDLPSGETQTVWMSHG--DEAVKLPEGFE----VVAKSVQGAVVAIENRERRIYGLQY 181 Query: 368 HPESSPGPQ 376 HPE + P+ Sbjct: 182 HPEVTHSPK 190 >gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional. Length = 237 Score = 50.3 bits (121), Expect = 7e-07 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 9/56 (16%) Query: 248 DGVLLSNGPGDPA-VT-----SVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQ 297 GV+++ G A VT S ++ + + +GMP+ GIC GHQLL ALG + Sbjct: 56 AGVIIT---GSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGE 108 >gnl|CDD|168720 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional. Length = 190 Score = 47.8 bits (114), Expect = 4e-06 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 10/100 (10%) Query: 280 MFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNG--------TVEIVSMNHGFAI 331 + G+CLGHQ L G + + HG P+K SN I + H +A+ Sbjct: 75 ILGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGLPEEFNI-GLYHSWAV 133 Query: 332 DASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371 + P LE T + ++ + P++ VQ+HPES Sbjct: 134 SEENFPTPLEITAVC-DENVVMAMQHKTLPIYGVQFHPES 172 >gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional. Length = 208 Score = 46.0 bits (109), Expect = 2e-05 Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 34/198 (17%) Query: 207 HVVCIDY--GIRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264 HVV ID NL+ + G + T+ ++I++ PD + LS GPG P Sbjct: 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPR---- 58 Query: 265 YSSPIICKLVDSGM---PMFGICLGHQLLGLALGAQ----------TVKMYQGHHGVNHP 311 + + L+D + P+ GICLG Q L G + T M GV P Sbjct: 59 -DAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEPCGPVHGTTDNMILTDAGVQSP 117 Query: 312 V---------KNISNGTVEIVSMNHGFAIDASSLPAGLEE--THISLFDSSNCGFRLIDQ 360 V + V + ++ P G+E T S D Sbjct: 118 VFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTDG 177 Query: 361 PVFSVQYHPES--SP-GP 375 +Q+HPES SP GP Sbjct: 178 KAIGLQFHPESVLSPTGP 195 >gnl|CDD|178477 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase. Length = 918 Score = 45.2 bits (107), Expect = 3e-05 Identities = 45/147 (30%), Positives = 61/147 (41%), Gaps = 12/147 (8%) Query: 248 DGVLLSNGPGDPAVTSVYSSPIICKLVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG 307 D +++S GPG P + + L +P+ G+CLGHQ LG GA+ V + HG Sbjct: 133 DNIVISPGPGSPTCPADIGICLRLLLECRDIPILGVCLGHQALGYVHGARIVHAPEPVHG 192 Query: 308 ----VNHP----VKNISNGTVE--IVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRL 357 + H +I +G V H IDA SLP E I+ SS+ L Sbjct: 193 RLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPK--ELVPIAWTSSSDTLSFL 250 Query: 358 IDQPVFSVQYHPESSPGPQDSYYLFST 384 Q V ES G S FS+ Sbjct: 251 ESQKSGLVPDAYESQIGQSGSSDPFSS 277 >gnl|CDD|183868 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 205 Score = 44.7 bits (107), Expect = 4e-05 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 19/90 (21%) Query: 211 IDYG---IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPG----DPAVTS 263 IDYG +RS + + L LG I ++I L DGV+L PG A+ + Sbjct: 5 IDYGMGNLRS-VEKALERLGAEAVITS---DPEEI--LAADGVIL---PGVGAFPDAMAN 55 Query: 264 VYSS---PIICKLVDSGMPMFGICLGHQLL 290 + +I + V SG P+ GICLG QLL Sbjct: 56 LRERGLDEVIKEAVASGKPLLGICLGMQLL 85 >gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional. Length = 531 Score = 44.6 bits (105), Expect = 4e-05 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 218 NLLRVLSSLGCRITI----VGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVYSSPIICKL 273 NL L S G + I + A+T + + ++ ++LS GPG P+ P + Sbjct: 16 NLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCM--PELLTR 73 Query: 274 VDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHG----VNHPVKNISNGTVEIVSMNHGF 329 + +P+ GICLGHQ + A G + + HG + H + + G + + Sbjct: 74 LRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNPLPVARYH 133 Query: 330 AIDASSLPAGLEETHISLFDSSNCGFRLIDQPVFSVQYHPES 371 ++ S++PAGL T + F+ R V Q+HPES Sbjct: 134 SLVGSNIPAGL--TINAHFNGMVMAVRHDADRVCGFQFHPES 173 >gnl|CDD|183869 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 200 Score = 42.5 bits (101), Expect = 2e-04 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 17/91 (18%) Query: 208 VVCIDYGIRSNLLRVLSSL---GCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSV 264 +V IDYG+ NL V +L G + I ++I+ DG++L PG A + Sbjct: 3 IVIIDYGV-GNLRSVSKALERAGAEVVITS---DPEEILDA--DGIVL---PGVGAFGAA 53 Query: 265 YS--SP---IICKLVDSGMPMFGICLGHQLL 290 SP +I + SG P GICLG QLL Sbjct: 54 MENLSPLRDVILEAARSGKPFLGICLGMQLL 84 >gnl|CDD|180812 PRK07053, PRK07053, glutamine amidotransferase; Provisional. Length = 234 Score = 40.3 bits (95), Expect = 9e-04 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 29/115 (25%) Query: 275 DSGMPMFGICLGHQLLGLALGAQTVKMYQGH-------------HGVNHPVKNISNGTVE 321 +G+P GICLG QL+ ALGA ++Y G G P++++ GT Sbjct: 81 AAGLPTLGICLGAQLIARALGA---RVYPGGQKEIGWAPLTLTDAGRASPLRHLGAGTP- 136 Query: 322 IVSMNHGFAIDASSLPAG---LEETHISLFDSSNCGFRLIDQPVFSVQYHPESSP 373 V HG D LP G L T + F + V ++Q+HPE+ Sbjct: 137 -VLHWHG---DTFDLPEGATLLASTPA----CRHQAFAWGNH-VLALQFHPEARE 182 >gnl|CDD|168162 PRK05665, PRK05665, amidotransferase; Provisional. Length = 240 Score = 37.5 bits (87), Expect = 0.006 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 272 KLVDSGMPMFGICLGHQLLGLALGAQTVKMYQG 304 KL + G + G+C GHQLL L LG + + QG Sbjct: 86 KLYERGDKLLGVCFGHQLLALLLGGKAERASQG 118 >gnl|CDD|181323 PRK08250, PRK08250, glutamine amidotransferase; Provisional. Length = 235 Score = 36.9 bits (86), Expect = 0.009 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%) Query: 255 GPGDPAVT----SVYSSP----IICKLVDSGMPMFGICLGHQLLGLALGAQ 297 GP P T + S +I + + +G + G+CLG QL+G ALGA+ Sbjct: 54 GPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAK 104 >gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 199 Score = 34.5 bits (80), Expect = 0.049 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 19/93 (20%) Query: 208 VVCIDYG---IRSNLLRVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPG----DPA 260 + IDYG +RS + L LG + +S + ++ D V+L PG A Sbjct: 2 IAIIDYGAGNLRS-VANALKRLGVEAVV----SSDPEEIAGA-DKVIL---PGVGAFGQA 52 Query: 261 VTSVYSS---PIICKLVDSGMPMFGICLGHQLL 290 + S+ S + + V+ P+ GICLG QLL Sbjct: 53 MRSLRESGLDEALKEHVEKKQPVLGICLGMQLL 85 >gnl|CDD|162563 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. Length = 196 Score = 33.8 bits (78), Expect = 0.087 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 21/95 (22%) Query: 208 VVCIDYGIRSNLLRVLSSLGCRITIVGAET----SYKDIMSLQPDGVLLSNGPGDPAVTS 263 +V IDYG+ NL V +L VGAE K+ D ++L PG A + Sbjct: 1 IVIIDYGV-GNLGSVKRAL----KRVGAEPVVVKDSKEAE--LADKLIL---PGVGAFGA 50 Query: 264 VYS-------SPIICKLVDSGMPMFGICLGHQLLG 291 + + +V G P+ GICLG QLL Sbjct: 51 AMARLRENGLDLFVELVVRLGKPVLGICLGMQLLF 85 >gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 209 Score = 32.1 bits (74), Expect = 0.29 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 26/98 (26%) Query: 208 VVCIDYG---IRS---NLLRVLSSLGCRITIVGAETS-YKDIMSLQPDGVLLSNGPGDPA 260 V IDYG +RS L R G + + T+ + + D V+L PG A Sbjct: 4 VAIIDYGSGNLRSAAKALERA--GAGADVVV----TADPDAVAA--ADRVVL---PGVGA 52 Query: 261 --------VTSVYSSPIICKLVDSGMPMFGICLGHQLL 290 +I ++ +G P GIC+G QLL Sbjct: 53 FADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLL 90 >gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 210 Score = 31.0 bits (70), Expect = 0.51 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Query: 237 TSYKDIMSLQPDGVLLSNGPGDPAVTSVYSS---PIICKLVDSGMPMFGICLGHQLL 290 TS + + +L +G D A+ ++ S+ I K V+SG P+FGIC+G Q+L Sbjct: 29 TSDPETIENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQIL 85 >gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional. Length = 239 Score = 30.7 bits (70), Expect = 0.64 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 14/44 (31%) Query: 279 PMFGICLGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEI 322 P GICLG Q+L LGA+ H +G VEI Sbjct: 88 PFLGICLGAQMLARHLGARV----APHP----------DGRVEI 117 >gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional. Length = 1485 Score = 30.6 bits (70), Expect = 0.78 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%) Query: 44 SLTGYQEILTDPSYLGQIVNFTFPHIGNVGVNSE------DFE 80 S+ G++E+ T+PS LG+I + P I V VN+ DFE Sbjct: 115 SVVGWREVPTNPSVLGEIALSSLPRIEQVFVNAPAGWRERDFE 157 >gnl|CDD|181035 PRK07567, PRK07567, glutamine amidotransferase; Provisional. Length = 242 Score = 30.3 bits (69), Expect = 0.92 Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 52/157 (33%) Query: 248 DGVLLSNGPG---DPAVTSVYS----------SPIICKLVDSGMPMFGICLGHQLLGLAL 294 GV++ P DPA + S S ++ ++V P G C G LG Sbjct: 53 SGVIVGGSPFNVSDPAES--KSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQ 110 Query: 295 GAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFA----------IDA--------SSL 336 G + Y PV G V + + G A A S+L Sbjct: 111 GGVVDRTY------GEPV-----GAVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSAL 159 Query: 337 PAGLEETHISLFDSSNC---GFRLIDQPVFSVQYHPE 370 P G + L S C FR + + V++ Q+HPE Sbjct: 160 PPG----AVLLATSPTCPVQMFR-VGENVYATQFHPE 191 >gnl|CDD|116299 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase domain. Length = 158 Score = 29.5 bits (67), Expect = 1.4 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 10/70 (14%) Query: 272 KLVDSGMPMFGICLGHQLLGLAL-----GAQTVKMYQG-----HHGVNHPVKNISNGTVE 321 + ++G P+ GIC G+Q+LG + G + +G V K + E Sbjct: 37 EHAEAGGPILGICGGYQMLGETIIDGIEGTAGGERVEGLGLLDIETVFQKEKTLGYVEGE 96 Query: 322 IVSMNHGFAI 331 + N G + Sbjct: 97 SLLFNKGEEV 106 >gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF. Length = 538 Score = 29.7 bits (67), Expect = 1.5 Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 270 ICKLVDSGMPMFGICLGHQLL 290 + + + + P GICLG QLL Sbjct: 72 LREYIQNDRPFLGICLGLQLL 92 >gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 196 Score = 29.4 bits (67), Expect = 1.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Query: 279 PMFGICLGHQLLG 291 P+ GICLG QLLG Sbjct: 72 PVLGICLGMQLLG 84 >gnl|CDD|162104 TIGR00915, 2A0602, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873. Length = 1044 Score = 29.3 bits (66), Expect = 1.9 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%) Query: 42 NTSLTGYQEILTDPSYLGQIV--------NFTFPHIGNVGVNSEDFESISRKNFKGAVGL 93 N ++ Q L P I+ + V + E++ +R N K A GL Sbjct: 231 NATIIA-QTRLQTPEQFEDILLKVNTDGSQVRLKDVARVELGGENYSISARFNGKPASGL 289 Query: 94 VIK 96 IK Sbjct: 290 AIK 292 >gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. Length = 929 Score = 29.1 bits (65), Expect = 2.0 Identities = 12/45 (26%), Positives = 19/45 (42%) Query: 48 YQEILTDPSYLGQIVNFTFPHIGNVGVNSEDFESISRKNFKGAVG 92 Y++ LTDP + TF + G + F S +R F+ Sbjct: 14 YEDYLTDPDSVDASWRSTFDQLPGPGPAPDQFHSPTRSYFRRLAK 58 >gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional. Length = 488 Score = 28.9 bits (66), Expect = 2.2 Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 270 ICKLVDSGMPMFGICLGHQLLG 291 I G P+ GIC G+Q+LG Sbjct: 318 IRAHARRGGPVLGICGGYQMLG 339 >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional. Length = 210 Score = 28.8 bits (64), Expect = 2.4 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Query: 77 EDFESISRKNFKGAVGLVIKAEITEPSNYRANMHFDAWLK 116 E F SI+R ++GA G ++ +IT + H +WL+ Sbjct: 66 ESFRSITRSYYRGAAGALLVYDITRRETFN---HLASWLE 102 >gnl|CDD|179238 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I; Provisional. Length = 261 Score = 28.2 bits (63), Expect = 4.1 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Query: 270 ICKLVDSGMPMFGICLGHQLLGLALGA 296 I + +D G P+ GIC G Q+L + LG Sbjct: 82 IEEFIDEGYPIIGICNGFQVL-VELGL 107 >gnl|CDD|180047 PRK05380, pyrG, CTP synthetase; Validated. Length = 533 Score = 28.1 bits (64), Expect = 4.2 Identities = 8/13 (61%), Positives = 9/13 (69%) Query: 277 GMPMFGICLGHQL 289 +P GICLG QL Sbjct: 372 NIPFLGICLGMQL 384 >gnl|CDD|130550 TIGR01486, HAD-SF-IIB-MPGP, mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obtain MPG. Length = 256 Score = 28.1 bits (63), Expect = 4.2 Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 25/121 (20%) Query: 159 KERAKNWSGLKG--AELAKHVTVSQRRDWSEKIWKWGEE--TSFLKSSDAK--------- 205 +GL A LA QRR++SE I W EE F ++ Sbjct: 114 DAEIAELTGLSRELAALA------QRREYSETIL-WSEERRERFTEALVELGLEVTHGNR 166 Query: 206 -YHVVCI--DYGIRSNLLRVLSSL-GCRITIVGAETSYKDI-MSLQPDGVLLSNGPGDPA 260 YHV+ D G +N L+ + G I +VG S D+ + D ++ GP P Sbjct: 167 FYHVLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPN 226 Query: 261 V 261 V Sbjct: 227 V 227 >gnl|CDD|150429 pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits. Length = 177 Score = 28.0 bits (63), Expect = 4.3 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 25/97 (25%) Query: 93 LVIKAEITEPSNYRANMHFDA---WLKSCG---IIGLSGIDTRALTVWIRDYGVSNS--V 144 LV++ EP R +A + G +I L G+ G + S + Sbjct: 70 LVLQGRSPEP-PGRWYEFAEAILDLAEELGVSEVITLGGLPAGVPHTRPPVTGAATSPEL 128 Query: 145 IAHHPDG----------------QFDLEDLKERAKNW 165 I D + L++L+E A N Sbjct: 129 IEELEDPKAALALLEALSKLLGLEVPLDELEEEADNI 165 >gnl|CDD|114645 pfam05934, MCLC, Mid-1-related chloride channel (MCLC). This family consists of several mid-1-related chloride channels. mid-1-related chloride channel (MCLC) proteins function as a chloride channel when incorporated in the planar lipid bilayer. Length = 577 Score = 27.8 bits (61), Expect = 5.3 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%) Query: 171 AELAK----HVTVSQRRDWSEKIWKW 192 AELAK +++ DWSE I+ W Sbjct: 262 AELAKLEDFDKVCAKKIDWSESIFDW 287 >gnl|CDD|165993 PLN02352, PLN02352, phospholipase D epsilon. Length = 758 Score = 27.6 bits (61), Expect = 5.6 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 285 LGHQLLGLALGAQTVKMYQGHHGVNHPVKNISNGTVEIVSMNHGFAIDASSLPAG 339 +G Q+ + G + V M +G H VN+P+ +G VE ++ G D + G Sbjct: 693 IGEQMWEIYSGEEVVDM-EGVHLVNYPISVTKDGAVEDLADGDGNFPDTKTPVKG 746 >gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit; Reviewed. Length = 561 Score = 27.4 bits (61), Expect = 6.0 Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 171 AELAKHVTVSQRRDWSEKIWKWGEE 195 L K+V R++W +KI +W +E Sbjct: 330 KSLIKYVQYCDRKEWLDKINQWKKE 354 >gnl|CDD|162798 TIGR02291, rimK_rel_E_lig, alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown. Length = 317 Score = 27.5 bits (61), Expect = 6.0 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%) Query: 100 TEPSNYRANMHFDAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLK 159 T S+ +AN+H A GI +G RA VW N I HHPD DL L+ Sbjct: 177 TRASDGKANLHQGA--VGVGIDLATGKTIRA--VWF------NQPITHHPDTGKDLSGLQ 226 Query: 160 ERAKNWSGL 168 +W L Sbjct: 227 --VPHWERL 233 >gnl|CDD|179609 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I; Provisional. Length = 219 Score = 27.4 bits (62), Expect = 7.5 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%) Query: 267 SPI---ICKLVDSGMPMFGICLGHQLL---GLALGA 296 SPI + + + G P+ GIC G Q+L GL GA Sbjct: 66 SPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGA 101 >gnl|CDD|163512 TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase. Length = 184 Score = 27.0 bits (60), Expect = 8.0 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 272 KLVDSGMPMFGICLGHQLL 290 + SG+P+FG C G +L Sbjct: 65 NFILSGLPVFGTCAGLIML 83 >gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase. Length = 606 Score = 27.2 bits (60), Expect = 8.2 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 112 DAWLKSCGIIGLSGIDTRALTVWIRDYGVSNSVIAHHPDGQFDLEDLKER---AKNWSGL 168 D W + C S I T ++ WI D N+V + +L DL E K+W G+ Sbjct: 233 DHWKELC-----SNIRTGCVSDWITDPSCRNAVSSILSKPNSELADLIESECSGKSWEGI 287 >gnl|CDD|161825 TIGR00337, PyrG, CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). Length = 525 Score = 26.9 bits (60), Expect = 9.3 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 355 FRLIDQPVF-SVQYHPESSPGPQDSYYLFSTFI 386 L D P F + Q+HPE + P + LF F+ Sbjct: 491 IELPDHPFFVACQFHPEFTSRPNRPHPLFLGFV 523 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.136 0.417 Gapped Lambda K H 0.267 0.0671 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,490,931 Number of extensions: 412534 Number of successful extensions: 876 Number of sequences better than 10.0: 1 Number of HSP's gapped: 825 Number of HSP's successfully gapped: 63 Length of query: 396 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 301 Effective length of database: 3,941,713 Effective search space: 1186455613 Effective search space used: 1186455613 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.2 bits)