HHsearch alignment for GI: 254780421 and conserved domain: COG3063

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].

Probab=97.13  E-value=0.012  Score=34.74  Aligned_cols=124  Identities=19%  Similarity=0.162  Sum_probs=74.4

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             13876669999999731255206999999999999511005778999999873126895789999999999630269989
Q gi|254780421|r   65 NSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYE  144 (218)
Q Consensus        65 ~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d  144 (218)
T Consensus        81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY--G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~--eN~G~Cal~~gq~~  156 (250)
T COG3063          81 KLGENDLADESYRKALSLAPNNGDVLNNY--GAFLCAQGRPEEAMQQFERALADPAYGEPSDTL--ENLGLCALKAGQFD  156 (250)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHH--HHHHHHHHHCCCCH
T ss_conf             90775567999999985298864055210--699970898689999999987188877753045--44578886437704


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             9999975311464235689999999999988998999999999983558
Q gi|254780421|r  145 EISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNN  193 (218)
Q Consensus       145 ~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~  193 (218)
T Consensus       157 ~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~  204 (250)
T COG3063         157 QAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf             4799999998837-57876789987988753130189999999970256