HHsearch alignment for GI: 254780421 and conserved domain: PRK02603
>PRK02603 photosystem I assembly protein Ycf3; Provisional.
Probab=98.17 E-value=0.00016 Score=46.33 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 87666999999973125520699999999999951100577899999987312689578999999999963026998999
Q gi|254780421|r 67 NKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEI 146 (218)
Q Consensus 67 ~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a 146 (218)
T Consensus 13 k~ftv~ad~~~k~~p~~~~~k~A~~Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le-~dp~D~s~ilyNiGlIY~~~G~~~kA 91 (172)
T PRK02603 13 KSFTVMADLILKILPINKKAKEAFVYYRDGMSAQNDGDYAEALENYEEALKLE-EDPNDRSYILYNMAIIYASNGEHDKA 91 (172)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 24899999999981588633689999972257774579999999999987277-89620899997799999986998899
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHC
Q ss_conf 9997531146423568999999999998899--------------89999999999835
Q gi|254780421|r 147 SKILQKLSEPSNPMHQFANEILGISALKFGK--------------VQKAKTIFEELAKD 191 (218)
Q Consensus 147 ~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd--------------~~~A~~~y~~i~~~ 191 (218)
T Consensus 92 ie~Y~kALeiN-P~~~~AlNNlgvIY~k~G~~a~~~~~~~~~~~~fdkAa~yw~kAI~l 149 (172)
T PRK02603 92 LETYHQALELN-PKQPSALNNIAVIYHKRGRKAEEAGDQDEAEAWFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999868-99789999999999998599998458778999999999999998850