HHsearch alignment for GI: 254780421 and conserved domain: PRK10049
>PRK10049 pgaA outer membrane protein PgaA; Provisional.
Probab=97.17 E-value=0.017 Score=33.85 Aligned_cols=141 Identities=9% Similarity=0.017 Sum_probs=82.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHH---HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC------------CHHHHHH
Q ss_conf 413876669999999731255206999---9999999995110057789999998731268------------9578999
Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPL---SNMYIASILVAKGDTKNAAEIFLKVANDDLA------------PLAVRYA 128 (218)
Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~l---A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~------------~~~~~~l 128 (218)
T Consensus 335 L~~~qP~kA~~iy~~l~~~~~~~~~~~~~e~~~~LfYA~~e~e~~~eA~~l~~~~~~~~p~~~~~~g~~~~~PNddy~-~ 413 (818)
T PRK10049 335 LDRRQPEKAAPILTELFYHPETIAPDLSDEELADLFYSLLESEQYPGALQVAVHTIETTPYFVRLYGLPTSIPNDDWL-Q 413 (818)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH-H
T ss_conf 863996899999999973485457653567887789998611118999999998653289604306888898882799-9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999996302699899999975311464235689999999999988998999999999983558998999999999995
Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILAN 208 (218)
Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~ 208 (218)
T Consensus 414 ~~~l~a~~~~~~ndL~~Ae~~le~l~~~-APgN~~L~~~~A~v~r~Rg~pr~Ae~~~~~a~~--l~P~~~~~~~~qa~~a 490 (818)
T PRK10049 414 GQSLLVQSLKASNDLPQAEKRLEELAYT-APGNQGLRIDYASVYQARGWPRAAENELKAAES--LEPRSLNLEVAQAWTA 490 (818)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_conf 9999999999757849999999999863-999879999999999854995999999999870--0864279998899998