HHsearch alignment for GI: 254780421 and conserved domain: TIGR02521
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=98.74 E-value=1.2e-06 Score=59.58 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHCCCCHH
Q ss_conf 999999999999999984138766699999997312552069999999999995110--057789999998731268957
Q gi|254780421|r 47 EKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKG--DTKNAAEIFLKVANDDLAPLA 124 (218)
Q Consensus 47 ~~~~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g--~~~~A~~~l~~i~~~~~~~~~ 124 (218)
T Consensus 31 ~~~~~~a~~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~--~a~~~lA~~Yq~~grP~~~~A~~~f~~Al~~~p~~g~ 108 (247)
T TIGR02521 31 TDREKAAKIRVQLALGYLEQGDLEKAKENLDKALEHDPDDY--DAYLALALYYQQLGRPELEKAEQSFRKALTLKPNNGD 108 (247)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 02799999999999999860787899999999987376661--2899999999871799557899999998624899852
Q ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHH
Q ss_conf 89999999999630269--98999999753114642-35689999999999988998999999999983-5589989999
Q gi|254780421|r 125 VRYAATLQAASILVDTS--SYEEISKILQKLSEPSN-PMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGIST 200 (218)
Q Consensus 125 ~~~lA~l~la~~~~~~~--~~d~a~~~l~~~~~~~~-~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ 200 (218)
T Consensus 109 ----~~NNYG~FLC~~g~~~~~~A~~~F~~A~~~p~Y~~~~~~~eN~G~C~~~~g~~~~A~~~l~~Al~~dp~~p~~lle 184 (247)
T TIGR02521 109 ----VLNNYGTFLCQQGNDKYEQAEQQFEAAIEDPLYPQPARSYENAGLCALKAGDTEKAEKYLTRALKIDPQRPESLLE 184 (247)
T ss_pred ----EECHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf ----3201457764048970689999999998668897330245549999986178688999999999858788855799
Q ss_pred HHHHHHHH
Q ss_conf 99999995
Q gi|254780421|r 201 RSQMILAN 208 (218)
Q Consensus 201 ra~~~l~~ 208 (218)
T Consensus 185 La~l~~~~ 192 (247)
T TIGR02521 185 LAELYYER 192 (247)
T ss_pred HHHHHHHC
T ss_conf 99998750