HHsearch alignment for GI: 254780421 and conserved domain: TIGR02521

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=98.74  E-value=1.2e-06  Score=59.58  Aligned_cols=156  Identities=19%  Similarity=0.236  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHCCCCHH
Q ss_conf             999999999999999984138766699999997312552069999999999995110--057789999998731268957
Q gi|254780421|r   47 EKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKG--DTKNAAEIFLKVANDDLAPLA  124 (218)
Q Consensus        47 ~~~~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g--~~~~A~~~l~~i~~~~~~~~~  124 (218)
T Consensus        31 ~~~~~~a~~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~--~a~~~lA~~Yq~~grP~~~~A~~~f~~Al~~~p~~g~  108 (247)
T TIGR02521        31 TDREKAAKIRVQLALGYLEQGDLEKAKENLDKALEHDPDDY--DAYLALALYYQQLGRPELEKAEQSFRKALTLKPNNGD  108 (247)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             02799999999999999860787899999999987376661--2899999999871799557899999998624899852


Q ss_pred             HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHH
Q ss_conf             89999999999630269--98999999753114642-35689999999999988998999999999983-5589989999
Q gi|254780421|r  125 VRYAATLQAASILVDTS--SYEEISKILQKLSEPSN-PMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGIST  200 (218)
Q Consensus       125 ~~~lA~l~la~~~~~~~--~~d~a~~~l~~~~~~~~-~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~  200 (218)
T Consensus       109 ----~~NNYG~FLC~~g~~~~~~A~~~F~~A~~~p~Y~~~~~~~eN~G~C~~~~g~~~~A~~~l~~Al~~dp~~p~~lle  184 (247)
T TIGR02521       109 ----VLNNYGTFLCQQGNDKYEQAEQQFEAAIEDPLYPQPARSYENAGLCALKAGDTEKAEKYLTRALKIDPQRPESLLE  184 (247)
T ss_pred             ----EECHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             ----3201457764048970689999999998668897330245549999986178688999999999858788855799


Q ss_pred             HHHHHHHH
Q ss_conf             99999995
Q gi|254780421|r  201 RSQMILAN  208 (218)
Q Consensus       201 ra~~~l~~  208 (218)
T Consensus       185 La~l~~~~  192 (247)
T TIGR02521       185 LAELYYER  192 (247)
T ss_pred             HHHHHHHC
T ss_conf             99998750