HHsearch alignment for GI: 254780421 and conserved domain: TIGR02521
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=97.53 E-value=0.0042 Score=37.59 Aligned_cols=131 Identities=20% Similarity=0.236 Sum_probs=95.4
Q ss_pred HHHCC--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 84138--766699999997312552069999999999995110--05778999999873126895789999999999630
Q gi|254780421|r 63 LFNSN--KLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKG--DTKNAAEIFLKVANDDLAPLAVRYAATLQAASILV 138 (218)
Q Consensus 63 ~~~~~--~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g--~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~ 138 (218)
T Consensus 81 Yq~~grP~~~~A~~~f~~Al~~~p~~g~~~NNY--G~FLC~~g~~~~~~A~~~F~~A~~~p~Y~~~~~--~~eN~G~C~~ 156 (247)
T TIGR02521 81 YQQLGRPELEKAEQSFRKALTLKPNNGDVLNNY--GTFLCQQGNDKYEQAEQQFEAAIEDPLYPQPAR--SYENAGLCAL 156 (247)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCCEECHH--HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHH
T ss_conf 987179955789999999862489985232014--577640489706899999999986688973302--4554999998
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCHHH
Q ss_conf 26998999999753114642356899999999999889989999999999835----5899899
Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD----NNSPFGI 198 (218)
Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~----~~~p~~~ 198 (218)
T Consensus 157 ~~g~~~~A~~~l~~Al~~d-p~~p~~lleLa~l~~~~g~~~~A~~~l~ry~~~~G~~~~~a~sL 219 (247)
T TIGR02521 157 KAGDTEKAEKYLTRALKID-PQRPESLLELAELYYERGQYAQARALLERYQQTVGVKNQTAESL 219 (247)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 6178688999999999858-78885579999998750772899999999998736788887347