HHsearch alignment for GI: 254780421 and conserved domain: TIGR02795

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.68  E-value=2.1e-07  Score=64.18  Aligned_cols=102  Identities=22%  Similarity=0.288  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999998413876669999999731255-206999999999999511005778999999873126895789999999
Q gi|254780421|r   54 GENFAQALELFNSNKLDDARSSFEKILSQDN-KLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQ  132 (218)
Q Consensus        54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~-~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~  132 (218)
T Consensus         3 ~~~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp-~s~KaPdALLK   81 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYP-KSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHH
T ss_conf             67899999998538878999999999886879876710547999999997339999999999986458-99860689999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             999630269989999997531146
Q gi|254780421|r  133 AASILVDTSSYEEISKILQKLSEP  156 (218)
Q Consensus       133 la~~~~~~~~~d~a~~~l~~~~~~  156 (218)
T Consensus        82 lg~~~~~~g~~~~A~~~l~~V~~~  105 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             999998728988999999999856