HHsearch alignment for GI: 254780421 and conserved domain: TIGR02795
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.68 E-value=2.1e-07 Score=64.18 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999998413876669999999731255-206999999999999511005778999999873126895789999999
Q gi|254780421|r 54 GENFAQALELFNSNKLDDARSSFEKILSQDN-KLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQ 132 (218)
Q Consensus 54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~-~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~ 132 (218)
T Consensus 3 ~~~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp-~s~KaPdALLK 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYP-KSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHH
T ss_conf 67899999998538878999999999886879876710547999999997339999999999986458-99860689999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 999630269989999997531146
Q gi|254780421|r 133 AASILVDTSSYEEISKILQKLSEP 156 (218)
Q Consensus 133 la~~~~~~~~~d~a~~~l~~~~~~ 156 (218)
T Consensus 82 lg~~~~~~g~~~~A~~~l~~V~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999998728988999999999856