HHsearch alignment for GI: 254780421 and conserved domain: TIGR02795
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.49 E-value=2.1e-06 Score=58.08 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114--6423568999999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE--PSNPMHQFANEIL 168 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~--~~~~~~~~a~ell 168 (218)
T Consensus 4 ~~y~aa~~~lk~gdY~~A~~~F~~F~~~YP-~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKl 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 789999999853887899999999988687-9876710547999999997339999999999986458998606899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCC-CCCHHH
Q ss_conf 999998899899999999998355-899899
Q gi|254780421|r 169 GISALKFGKVQKAKTIFEELAKDN-NSPFGI 198 (218)
Q Consensus 169 g~~~~~~Gd~~~A~~~y~~i~~~~-~~p~~~ 198 (218)
T Consensus 83 g~~~~~~g~~~~A~~~l~~V~~~YP~s~aA~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999872898899999999985669987889