HHsearch alignment for GI: 254780421 and conserved domain: TIGR03302
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.08 E-value=1.4e-08 Score=71.52 Aligned_cols=144 Identities=18% Similarity=0.112 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999999998413876669999999731255-206999999999999511005778999999873126895789999
Q gi|254780421|r 51 NIVGENFAQALELFNSNKLDDARSSFEKILSQDN-KLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAA 129 (218)
Q Consensus 51 ~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~-~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA 129 (218)
T Consensus 31 ~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~~~~y~~A~~~~~~Fi~~yP~~~-~~~ya 109 (235)
T TIGR03302 31 RPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP-DADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHH
T ss_conf 89999999999999878999999999999986899313799999999999976439999999999999887743-49999
Q ss_pred HHHHHHHHHCCC--------CHHHHHHHHHHHCC--CCCHHHHHH--------------HHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999630269--------98999999753114--642356899--------------999999999889989999999
Q gi|254780421|r 130 TLQAASILVDTS--------SYEEISKILQKLSE--PSNPMHQFA--------------NEILGISALKFGKVQKAKTIF 185 (218)
Q Consensus 130 ~l~la~~~~~~~--------~~d~a~~~l~~~~~--~~~~~~~~a--------------~ellg~~~~~~Gd~~~A~~~y 185 (218)
T Consensus 110 ~y~~a~s~~~~~~~~~rDq~~~~~A~~~f~~~i~~yP~S~ya~dA~~~i~~l~~~LA~~e~~ia~~Y~k~~~y~aAi~r~ 189 (235)
T TIGR03302 110 YYLRGLSNYKQIDDSDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99987998873665445808999999999999988899657999999999999999999999999999841709999999
Q ss_pred HHHHHC-CCCC
Q ss_conf 999835-5899
Q gi|254780421|r 186 EELAKD-NNSP 195 (218)
Q Consensus 186 ~~i~~~-~~~p 195 (218)
T Consensus 190 ~~vl~~Yp~t~ 200 (235)
T TIGR03302 190 ETVVENYPDTP 200 (235)
T ss_pred HHHHHHCCCCC
T ss_conf 99998689985