HHsearch alignment for GI: 254780421 and conserved domain: TIGR03302

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.08  E-value=1.4e-08  Score=71.52  Aligned_cols=144  Identities=18%  Similarity=0.112  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             9999999999998413876669999999731255-206999999999999511005778999999873126895789999
Q gi|254780421|r   51 NIVGENFAQALELFNSNKLDDARSSFEKILSQDN-KLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAA  129 (218)
Q Consensus        51 ~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~-~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA  129 (218)
T Consensus        31 ~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~~~~y~~A~~~~~~Fi~~yP~~~-~~~ya  109 (235)
T TIGR03302        31 RPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP-DADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHH
T ss_conf             89999999999999878999999999999986899313799999999999976439999999999999887743-49999


Q ss_pred             HHHHHHHHHCCC--------CHHHHHHHHHHHCC--CCCHHHHHH--------------HHHHHHHHHHCCCHHHHHHHH
Q ss_conf             999999630269--------98999999753114--642356899--------------999999999889989999999
Q gi|254780421|r  130 TLQAASILVDTS--------SYEEISKILQKLSE--PSNPMHQFA--------------NEILGISALKFGKVQKAKTIF  185 (218)
Q Consensus       130 ~l~la~~~~~~~--------~~d~a~~~l~~~~~--~~~~~~~~a--------------~ellg~~~~~~Gd~~~A~~~y  185 (218)
T Consensus       110 ~y~~a~s~~~~~~~~~rDq~~~~~A~~~f~~~i~~yP~S~ya~dA~~~i~~l~~~LA~~e~~ia~~Y~k~~~y~aAi~r~  189 (235)
T TIGR03302       110 YYLRGLSNYKQIDDSDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99987998873665445808999999999999988899657999999999999999999999999999841709999999


Q ss_pred             HHHHHC-CCCC
Q ss_conf             999835-5899
Q gi|254780421|r  186 EELAKD-NNSP  195 (218)
Q Consensus       186 ~~i~~~-~~~p  195 (218)
T Consensus       190 ~~vl~~Yp~t~  200 (235)
T TIGR03302       190 ETVVENYPDTP  200 (235)
T ss_pred             HHHHHHCCCCC
T ss_conf             99998689985