HHsearch alignment for GI: 254780421 and conserved domain: cd00189

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C.
Probab=98.25  E-value=2.7e-05  Score=51.13  Aligned_cols=97  Identities=23%  Similarity=0.229  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             99999999951100577899999987312689578999999999963026998999999753114642356899999999
Q gi|254780421|r   91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI  170 (218)
Q Consensus        91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~  170 (218)
T Consensus         2 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   76 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGL   76 (100)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf             899999999984999999999999998599989----999999999998598589999999999869-898999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCC
Q ss_conf             9998899899999999998355
Q gi|254780421|r  171 SALKFGKVQKAKTIFEELAKDN  192 (218)
Q Consensus       171 ~~~~~Gd~~~A~~~y~~i~~~~  192 (218)
T Consensus        77 ~~~~~~~~~~A~~~~~~al~~~   98 (100)
T cd00189          77 AYYKLGKYEEALEAYEKALELD   98 (100)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHC
T ss_conf             9999499999999999999749