HHsearch results for GI: 254780421 and protein with PDBid: 1qqe_A
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.89 E-value=0.0011 Score=39.82 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999999999999999999999984-138766699999997312----552069999999999995110057789999
Q gi|254780421|r 38 WFYLFDGSHEKKKNIVGENFAQALELF-NSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVAKGDTKNAAEIF 112 (218)
Q Consensus 38 ~~~~~~~~q~~~~~~as~~y~~al~~~-~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l 112 (218)
++.++......+.+.+.+.|..+...+ ..+++++|+..+.+-.+- ++..-...+...++.++...|++++|+..+
T Consensus 21 ~~~~~~~~~~~~ye~A~~~y~~aa~~f~~~k~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~~~~y~~~~~~~~A~~~~ 100 (292)
T 1qqe_A 21 FMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 88885389621199999999999999998789999999999999999886997999999999999998769879999999
Q ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCC----CC-CHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99873126--895789999999999630-26998999999753114----64-235689999999999988998999999
Q gi|254780421|r 113 LKVANDDL--APLAVRYAATLQAASILV-DTSSYEEISKILQKLSE----PS-NPMHQFANEILGISALKFGKVQKAKTI 184 (218)
Q Consensus 113 ~~i~~~~~--~~~~~~~lA~l~la~~~~-~~~~~d~a~~~l~~~~~----~~-~~~~~~a~ellg~~~~~~Gd~~~A~~~ 184 (218)
...++-.. ........+...++.++. ..+++++|+..+..... .+ ..........+|.++...|++++|.+.
T Consensus 101 ~~a~~~~~~~g~~~~a~~~~~~la~~~~~~~~~~~~A~~~y~kA~~~~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999877537416899999999899998721099999999999987553688898999999999999984369999999
Q ss_pred HHHHHHCCC
Q ss_conf 999983558
Q gi|254780421|r 185 FEELAKDNN 193 (218)
Q Consensus 185 y~~i~~~~~ 193 (218)
|++++....
T Consensus 181 y~~a~~~~~ 189 (292)
T 1qqe_A 181 YSKLIKSSM 189 (292)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
T ss_conf 999998734