HHsearch results for GI: 254780421 and protein with PDBid: 2vq2_A
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.85 E-value=1.1e-06 Score=58.35 Aligned_cols=131 Identities=17% Similarity=0.108 Sum_probs=84.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999984138766699999997312552069999999999995-11005778999999873126895789999999999
Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILV-AKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAAS 135 (218)
Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~-~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~ 135 (218)
+.-+......++++.|...+++.++..++.. .+...++..+. ..|+.++|+..++..+..+..+... .+.+.++.
T Consensus 46 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~--~~~~~lg~ 121 (225)
T 2vq2_A 46 LVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY--IANLNKGI 121 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHH--HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
T ss_conf 9999999987899999999999986298621--2356478999998175076656689999722363046--88752688
Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 630269989999997531146423568999999999998899899999999998355
Q gi|254780421|r 136 ILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN 192 (218)
Q Consensus 136 ~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~ 192 (218)
++...+++++|+..+.....-+ |-...+...+|.++...|++++|...|+++....
T Consensus 122 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 8888589999999999999868-9989999999999999499999999999998428