HHsearch results for GI: 254780421 and protein with PDBid: 3mkr_A
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.31 E-value=7.8e-05 Score=46.98 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=89.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99984138766699999997312552069999999999995110057789999998731268957899999999996302
Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD 139 (218)
Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~ 139 (218)
+......+++++|+..+.+. .+ .......+.++...|+.+.|...++.+++-.+.+. .....+..+.+...
T Consensus 108 a~~~~~~~~~~~Al~~~~~~----~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~~~ 178 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQG----DS---LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT--LTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTTC----CS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHCC----CC---CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCC
T ss_conf 99999879999999987453----66---55589999999986998889999999998642577--99999835777505
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf 6998999999753114642356899999999999889989999999999835-58998999999999995003
Q gi|254780421|r 140 TSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQMILANIIA 211 (218)
Q Consensus 140 ~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~~~l~~l~~ 211 (218)
.+++++|+..+....... |.....+..+|.++...|++++|++.|++++.. ++.|..+...+ .....++.
T Consensus 179 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~g~ 249 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV-VLSQHLGK 249 (291)
T ss_dssp TTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHCCC
T ss_conf 423999999888888750-146999988999999819889999999999986899999999999-99998699