HHsearch results for GI: 254780421 and protein with PDBid: 3mkr_A

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.31  E-value=7.8e-05  Score=46.98  Aligned_cols=141  Identities=11%  Similarity=0.080  Sum_probs=89.3

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             99984138766699999997312552069999999999995110057789999998731268957899999999996302
Q gi|254780421|r   60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD  139 (218)
Q Consensus        60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~  139 (218)
                      +......+++++|+..+.+.    .+   .......+.++...|+.+.|...++.+++-.+.+.  .....+..+.+...
T Consensus       108 a~~~~~~~~~~~Al~~~~~~----~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~~~  178 (291)
T 3mkr_A          108 ASIYFYDQNPDAALRTLHQG----DS---LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT--LTQLATAWVSLAAG  178 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHTTC----CS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHCC----CC---CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCC
T ss_conf             99999879999999987453----66---55589999999986998889999999998642577--99999835777505


Q ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf             6998999999753114642356899999999999889989999999999835-58998999999999995003
Q gi|254780421|r  140 TSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQMILANIIA  211 (218)
Q Consensus       140 ~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~~~l~~l~~  211 (218)
                      .+++++|+..+....... |.....+..+|.++...|++++|++.|++++.. ++.|..+...+ .....++.
T Consensus       179 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~g~  249 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV-VLSQHLGK  249 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHCCC
T ss_conf             423999999888888750-146999988999999819889999999999986899999999999-99998699